AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050654


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050654.t1 MTR_7g117420 96.965 626 18 1 1 626 1 625 0.0 1236
MS.gene050654.t1 MTR_7g117420 96.965 626 18 1 1 626 1 625 0.0 1236
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050654.t1 AT3G61800 51.529 654 257 12 13 626 8 641 0.0 611
MS.gene050654.t1 AT3G61800 51.529 654 257 12 13 626 8 641 0.0 611

Find 125 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTATCACTACTCATATTT+TGG 0.084349 7.3:-886089 None:intergenic
TGAAGAGTTCGTCAATTATT+TGG 0.177904 7.3:-885204 None:intergenic
ACTTGCTTCTCAAACCTTAA+TGG 0.182401 7.3:+884698 MS.gene050654:CDS
GCTTGAGGACTTTCGCTCTT+TGG 0.264270 7.3:+885675 MS.gene050654:CDS
TCAAGAATGGGTTTCTGTTC+TGG 0.266520 7.3:+885828 MS.gene050654:CDS
GACTCTCATTGTTGAGAGTT+TGG 0.271333 7.3:+885246 MS.gene050654:CDS
ACTTCAAGATCAGCCGCTTT+TGG 0.271514 7.3:+886726 MS.gene050654:CDS
ATGAAAATTTGTCCATTTCA+TGG 0.272246 7.3:+886456 MS.gene050654:CDS
ACGCTTCATGAGATCCATTA+AGG 0.280350 7.3:-884712 None:intergenic
TAACTGATTTAACACGGTTT+TGG 0.295994 7.3:-885912 None:intergenic
GGGGTTCTCACTTGGATACT+TGG 0.305283 7.3:+886232 MS.gene050654:CDS
GTGCAAAACTTGCTAAAATT+CGG 0.324391 7.3:+886661 MS.gene050654:CDS
TGTCCTTGAGTGTTGGGTTT+CGG 0.338318 7.3:+885278 MS.gene050654:CDS
GAAAAGAGAAATTGATAAAC+AGG 0.344103 7.3:+886629 MS.gene050654:CDS
ATTCAGAGATTCTACTTTGA+AGG 0.352140 7.3:+885876 MS.gene050654:CDS
TGAGCTTTAGTGTATTCTTC+AGG 0.353508 7.3:-885429 None:intergenic
TCCACATTAGCTTGTATGTT+AGG 0.356001 7.3:-885457 None:intergenic
GATGCAACAGACGGAGGGGC+AGG 0.359769 7.3:-885316 None:intergenic
GGTGGTTCGTTACTCCGATT+TGG 0.367502 7.3:+884668 MS.gene050654:CDS
GAGAAGTGGAATGTTTCGTT+TGG 0.373506 7.3:+885370 MS.gene050654:CDS
TCATCATCTCGAGGAATAAT+AGG 0.380344 7.3:-886480 None:intergenic
CAATGGCCTTTGTACGCAAA+AGG 0.381816 7.3:-885339 None:intergenic
AGTTAATGTCCTTGAGTGTT+GGG 0.381948 7.3:+885272 MS.gene050654:CDS
TGCAAAACTTGCTAAAATTC+GGG 0.384462 7.3:+886662 MS.gene050654:CDS
GCGGGAGCTATACAAACTTC+TGG 0.386282 7.3:+885783 MS.gene050654:CDS
AGAAGTGGAATGTTTCGTTT+GGG 0.387150 7.3:+885371 MS.gene050654:CDS
AATTTCTGAATTGAGTGTTC+CGG 0.389243 7.3:+886350 MS.gene050654:CDS
GGGTTCTCACTTGGATACTT+GGG 0.398806 7.3:+886233 MS.gene050654:CDS
CATTACAGACAGCTTAGATT+AGG 0.400928 7.3:+885397 MS.gene050654:CDS
GATTGGATCTTGAAAGTCAT+TGG 0.404975 7.3:+886289 MS.gene050654:CDS
CCATCTTACCACAGGAGCTT+TGG 0.407101 7.3:-886211 None:intergenic
GCCGTGCTCCTTTGAGAAAA+GGG 0.408275 7.3:+886412 MS.gene050654:CDS
ACAGACGGAGGGGCAGGGAG+CGG 0.413891 7.3:-885310 None:intergenic
TGCCGTGCTCCTTTGAGAAA+AGG 0.415320 7.3:+886411 MS.gene050654:CDS
CTTGGTTTCCATTCAAGAAT+GGG 0.416261 7.3:+885816 MS.gene050654:CDS
AAGCTAATGTGGAGAGGATT+CGG 0.418840 7.3:+885467 MS.gene050654:CDS
AACACTGACAGCCTACTTCA+TGG 0.429399 7.3:+886144 MS.gene050654:CDS
CCAAAGCTCCTGTGGTAAGA+TGG 0.429788 7.3:+886211 MS.gene050654:CDS
TAAACTCATCAAAACTTGAC+GGG 0.431421 7.3:+885968 MS.gene050654:CDS
ACTTGGTTTCCATTCAAGAA+TGG 0.435377 7.3:+885815 MS.gene050654:CDS
TATGGCCAACCAGCGGGGAT+TGG 0.436674 7.3:+886272 MS.gene050654:CDS
ATTGGATCTTGAAAGTCATT+GGG 0.440525 7.3:+886290 MS.gene050654:CDS
TGGGAAGTTGATGCCACGTC+AGG 0.445034 7.3:-886069 None:intergenic
ATGGAAAAGGAGCGAAGGTT+AGG 0.446317 7.3:+884574 MS.gene050654:CDS
CTAAACTCATCAAAACTTGA+CGG 0.453308 7.3:+885967 MS.gene050654:CDS
CACACCAGATGGGGTTTCAA+TGG 0.456189 7.3:-886025 None:intergenic
GGAATAATAGGTCCATGAAA+TGG 0.457015 7.3:-886468 None:intergenic
GAAGAAGGCGAAAGAGAAGA+AGG 0.458533 7.3:+884549 MS.gene050654:CDS
CAGTTAATGTCCTTGAGTGT+TGG 0.460515 7.3:+885271 MS.gene050654:CDS
ATGCAACAGACGGAGGGGCA+GGG 0.465331 7.3:-885315 None:intergenic
CAAAGCTCCTGTGGTAAGAT+GGG 0.471408 7.3:+886212 MS.gene050654:CDS
TCAAAGGAGCACGGCATGGT+TGG 0.482748 7.3:-886404 None:intergenic
AAAGGGATGCAACAGACGGA+GGG 0.483326 7.3:-885321 None:intergenic
AATTCAGAAATTATATCTGA+TGG 0.490481 7.3:-886339 None:intergenic
ACACTGACAGCCTACTTCAT+GGG 0.496310 7.3:+886145 MS.gene050654:CDS
AGAGAAGAAGGGAATGGAAA+AGG 0.500826 7.3:+884561 MS.gene050654:CDS
GGCGAAAGAGAAGAAGGGAA+TGG 0.503524 7.3:+884555 MS.gene050654:CDS
AACAGAAACCCATTCTTGAA+TGG 0.505019 7.3:-885824 None:intergenic
CGTCGTGAAGCATTGAATGA+AGG 0.506233 7.3:+885712 MS.gene050654:CDS
AGCAAGTCGGAGCTCCAAAT+CGG 0.507757 7.3:-884682 None:intergenic
AATGGCCTTTGTACGCAAAA+GGG 0.509485 7.3:-885338 None:intergenic
ATTATTCCTCGAGATGATGA+AGG 0.512319 7.3:+886483 MS.gene050654:CDS
AGAGGATTCGGCAAGAGAGA+AGG 0.518182 7.3:+885479 MS.gene050654:CDS
GGTAAGATGGGGTTCTCACT+TGG 0.521435 7.3:+886224 MS.gene050654:CDS
GTCAAAAGTTTACTCCTCAG+AGG 0.527239 7.3:-886189 None:intergenic
CGTCAATTATTTGGAGTGCA+AGG 0.528658 7.3:-885195 None:intergenic
TCTACGATGGAGGAGATTGA+TGG 0.530605 7.3:+885589 MS.gene050654:CDS
TATTATCAGGCACACCAGAT+GGG 0.532703 7.3:-886035 None:intergenic
ACTTCTGGTGACAAAGCACT+TGG 0.540008 7.3:+885798 MS.gene050654:CDS
AGGAGGCGGTGATCGACATC+CGG 0.540708 7.3:-884630 None:intergenic
CTCATCATCTTCTCCAAAAG+CGG 0.546653 7.3:-886739 None:intergenic
GAGGATTCGGCAAGAGAGAA+GGG 0.547375 7.3:+885480 MS.gene050654:CDS
GTCGTGAAGCATTGAATGAA+GGG 0.550115 7.3:+885713 MS.gene050654:CDS
TTAACATTCATGTCTTCTGA+AGG 0.550553 7.3:-886525 None:intergenic
TTATTATCAGGCACACCAGA+TGG 0.551120 7.3:-886036 None:intergenic
AAGAAGGCGAAAGAGAAGAA+GGG 0.554761 7.3:+884550 MS.gene050654:CDS
AGAGAAGGGAGAGGGAGATG+AGG 0.558791 7.3:+885494 MS.gene050654:CDS
AAAAGGGATGCAACAGACGG+AGG 0.562638 7.3:-885322 None:intergenic
GGTTCTCACTTGGATACTTG+GGG 0.562903 7.3:+886234 MS.gene050654:CDS
CTTAGACGATGAAGAGCTTG+AGG 0.566022 7.3:+885660 MS.gene050654:CDS
TCAAAAGTTTACTCCTCAGA+GGG 0.569727 7.3:-886188 None:intergenic
CACTGACAGCCTACTTCATG+GGG 0.569874 7.3:+886146 MS.gene050654:CDS
GTATCCATTGAAACCCCATC+TGG 0.569924 7.3:+886021 MS.gene050654:CDS
GGCAACAAATTCCACCGCAC+CGG 0.571423 7.3:+884611 MS.gene050654:CDS
GTGATCGACATCCGGTGCGG+TGG 0.573761 7.3:-884622 None:intergenic
ATCTTGAAAGTCATTGGGGT+AGG 0.574477 7.3:+886295 MS.gene050654:CDS
TTCGGCAAGAGAGAAGGGAG+AGG 0.578002 7.3:+885485 MS.gene050654:CDS
TTTCAAGATCCAATCCCCGC+TGG 0.583117 7.3:-886281 None:intergenic
AAGATCCAATCCCCGCTGGT+TGG 0.583660 7.3:-886277 None:intergenic
GGATACTTGGGGTTCAAACA+AGG 0.586225 7.3:+886245 MS.gene050654:CDS
TCGCCGAAACCCAACACTCA+AGG 0.592782 7.3:-885281 None:intergenic
CGCAAAAGGGATGCAACAGA+CGG 0.595656 7.3:-885325 None:intergenic
AGGGAATGGAAAAGGAGCGA+AGG 0.595700 7.3:+884569 MS.gene050654:CDS
TCCTAACATACAAGCTAATG+TGG 0.595760 7.3:+885456 MS.gene050654:CDS
TTATGAAAGCAGTGATAACA+AGG 0.597508 7.3:+885744 MS.gene050654:CDS
TCTTGAAAGTCATTGGGGTA+GGG 0.598282 7.3:+886296 MS.gene050654:CDS
GATTGGATAGGTATGGAAGA+AGG 0.598556 7.3:+884534 None:intergenic
ATTATCAGGCACACCAGATG+GGG 0.602798 7.3:-886034 None:intergenic
CATGAAGCGTGATCACTCCC+AGG 0.603510 7.3:+884725 MS.gene050654:CDS
CCTCCTCAAAGCAATCAAAA+CGG 0.603835 7.3:+884647 MS.gene050654:CDS
TTTCTCAAAGGAGCACGGCA+TGG 0.606475 7.3:-886408 None:intergenic
TGTTCGTGAAACAGACAAGA+AGG 0.608437 7.3:+886599 MS.gene050654:CDS
CCGTGCTCCTTTGAGAAAAG+GGG 0.616217 7.3:+886413 MS.gene050654:CDS
AGCTTCCCTTCATCATCTCG+AGG 0.617559 7.3:-886489 None:intergenic
TTATTCCTCGAGATGATGAA+GGG 0.619534 7.3:+886484 MS.gene050654:CDS
GAAGTGGAATGTTTCGTTTG+GGG 0.626587 7.3:+885372 MS.gene050654:CDS
TGAGAACCCCATCTTACCAC+AGG 0.626927 7.3:-886219 None:intergenic
AGAGATACTGTCTACGATGG+AGG 0.627724 7.3:+885579 MS.gene050654:CDS
TCGGCAAGAGAGAAGGGAGA+GGG 0.636680 7.3:+885486 MS.gene050654:CDS
GGGAGAGATACTGTCTACGA+TGG 0.642323 7.3:+885576 MS.gene050654:CDS
CGTGCTCCTTTGAGAAAAGG+GGG 0.646992 7.3:+886414 MS.gene050654:CDS
CTACGATGGAGGAGATTGAT+GGG 0.647781 7.3:+885590 MS.gene050654:CDS
TTAAGGTTTGAGAAGCAAGT+CGG 0.651226 7.3:-884695 None:intergenic
TCGTGAAGCATTGAATGAAG+GGG 0.651545 7.3:+885714 MS.gene050654:CDS
AAAGCTCCTGTGGTAAGATG+GGG 0.652782 7.3:+886213 MS.gene050654:CDS
AAGGGATGCAACAGACGGAG+GGG 0.656411 7.3:-885320 None:intergenic
AATCAGAGTCAAACCCTCTG+AGG 0.661720 7.3:+886175 MS.gene050654:CDS
AATATGAGTAGTGATAAACT+TGG 0.665201 7.3:+886093 MS.gene050654:CDS
ACATACAAGCTAATGTGGAG+AGG 0.665961 7.3:+885461 MS.gene050654:CDS
TTGGATCTTGAAAGTCATTG+GGG 0.668632 7.3:+886291 MS.gene050654:CDS
AAACTCATCAAAACTTGACG+GGG 0.674187 7.3:+885969 MS.gene050654:CDS
CCTCAAAGCAATCAAAACGG+TGG 0.690187 7.3:+884650 MS.gene050654:CDS
GCGGTGATCGACATCCGGTG+CGG 0.720821 7.3:-884625 None:intergenic
TCGTGAAACAGACAAGAAGG+TGG 0.730580 7.3:+886602 MS.gene050654:CDS
ACTGACAGCCTACTTCATGG+GGG 0.785079 7.3:+886147 MS.gene050654:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTAACTGATTTAACA+CGG - chr7.3:885921-885940 None:intergenic 15.0%
!! AAAACTATATCAAAGGTAAT+AGG + chr7.3:885035-885054 MS.gene050654:intron 20.0%
!! AATTCAGAAATTATATCTGA+TGG - chr7.3:886342-886361 None:intergenic 20.0%
!! AGGAATTAAATAAAATACCT+GGG - chr7.3:884745-884764 None:intergenic 20.0%
!! AGTTGATTATATCTACAATA+AGG - chr7.3:885088-885107 None:intergenic 20.0%
!!! AGAGAAATTTTCTTCAATAA+AGG + chr7.3:885555-885574 MS.gene050654:CDS 20.0%
!!! ATCAAAAAATTGCTTTTGTT+AGG + chr7.3:884891-884910 MS.gene050654:intron 20.0%
!!! GAGAAATTTTCTTCAATAAA+GGG + chr7.3:885556-885575 MS.gene050654:CDS 20.0%
!!! TTTATCAATTTCTCTTTTCT+TGG - chr7.3:886628-886647 None:intergenic 20.0%
!!! TTTATCACTACTCATATTTT+GGG - chr7.3:886091-886110 None:intergenic 20.0%
! AATATGAGTAGTGATAAACT+TGG + chr7.3:886093-886112 MS.gene050654:CDS 25.0%
! ATCAGTTAAAAAAAGATGTG+AGG + chr7.3:885927-885946 MS.gene050654:CDS 25.0%
! ATGAAAATTTGTCCATTTCA+TGG + chr7.3:886456-886475 MS.gene050654:CDS 25.0%
! GAAAAGAGAAATTGATAAAC+AGG + chr7.3:886629-886648 MS.gene050654:CDS 25.0%
! GAGGAATTAAATAAAATACC+TGG - chr7.3:884746-884765 None:intergenic 25.0%
! TCTAAGGAAAACTATATCAA+AGG + chr7.3:885028-885047 MS.gene050654:intron 25.0%
! TTTGATTCTTATAATTGCCA+CGG + chr7.3:884795-884814 MS.gene050654:intron 25.0%
!! GTTGAATTCTTTGGATATTT+TGG + chr7.3:884823-884842 MS.gene050654:intron 25.0%
!! GTTTATCACTACTCATATTT+TGG - chr7.3:886092-886111 None:intergenic 25.0%
!! TACCAAAGGAAATTTTATGA+TGG - chr7.3:884922-884941 None:intergenic 25.0%
!!! GGATGTTTGTTTTTATTATC+AGG - chr7.3:886051-886070 None:intergenic 25.0%
!!! TCAATTTGCTTTTCTTCATA+AGG - chr7.3:886381-886400 None:intergenic 25.0%
AATTTCTGAATTGAGTGTTC+CGG + chr7.3:886350-886369 MS.gene050654:CDS 30.0%
AGTTAAAAAAAGATGTGAGG+AGG + chr7.3:885930-885949 MS.gene050654:CDS 30.0%
ATATCAATCCATGTCAACAA+GGG - chr7.3:885158-885177 None:intergenic 30.0%
ATCATGAAACTATACAAGAG+AGG + chr7.3:884864-884883 MS.gene050654:intron 30.0%
ATTCAGAGATTCTACTTTGA+AGG + chr7.3:885876-885895 MS.gene050654:CDS 30.0%
ATTGGATCTTGAAAGTCATT+GGG + chr7.3:886290-886309 MS.gene050654:CDS 30.0%
CTAAAAGCGATTTCAACAAT+AGG + chr7.3:884942-884961 MS.gene050654:intron 30.0%
CTAAACTCATCAAAACTTGA+CGG + chr7.3:885967-885986 MS.gene050654:CDS 30.0%
TAAACTCATCAAAACTTGAC+GGG + chr7.3:885968-885987 MS.gene050654:CDS 30.0%
TAGGATGAGAGAATAAATGA+TGG + chr7.3:885054-885073 MS.gene050654:intron 30.0%
TCAATTTAGACGACTATCTA+AGG + chr7.3:885012-885031 MS.gene050654:intron 30.0%
TCATGAAACTATACAAGAGA+GGG + chr7.3:884865-884884 MS.gene050654:intron 30.0%
TGAAGAGTTCGTCAATTATT+TGG - chr7.3:885207-885226 None:intergenic 30.0%
TGCCATCATAAAATTTCCTT+TGG + chr7.3:884917-884936 MS.gene050654:intron 30.0%
TTAACATTCATGTCTTCTGA+AGG - chr7.3:886528-886547 None:intergenic 30.0%
TTATGAAAGCAGTGATAACA+AGG + chr7.3:885744-885763 MS.gene050654:CDS 30.0%
! AACACAATGATGCAGTTTTA+CGG + chr7.3:886685-886704 MS.gene050654:CDS 30.0%
! AGACATTTTGCATTCAAAAC+AGG + chr7.3:885618-885637 MS.gene050654:CDS 30.0%
! TACAAAGGCCATTGAATTTT+TGG + chr7.3:885348-885367 MS.gene050654:CDS 30.0%
!! ATTGATATGTGTTTCAGGTT+AGG + chr7.3:885170-885189 MS.gene050654:intron 30.0%
!! GGTTAGGTTTTTGATTGAAA+AGG + chr7.3:884590-884609 MS.gene050654:CDS 30.0%
!! GTGCAAAACTTGCTAAAATT+CGG + chr7.3:886661-886680 MS.gene050654:CDS 30.0%
!! TAACTGATTTAACACGGTTT+TGG - chr7.3:885915-885934 None:intergenic 30.0%
!! TGCAAAACTTGCTAAAATTC+GGG + chr7.3:886662-886681 MS.gene050654:CDS 30.0%
AAACTCATCAAAACTTGACG+GGG + chr7.3:885969-885988 MS.gene050654:CDS 35.0%
AACAGAAACCCATTCTTGAA+TGG - chr7.3:885827-885846 None:intergenic 35.0%
ACTTGCTTCTCAAACCTTAA+TGG + chr7.3:884698-884717 MS.gene050654:CDS 35.0%
ACTTGGTTTCCATTCAAGAA+TGG + chr7.3:885815-885834 MS.gene050654:CDS 35.0%
AGAAGTGGAATGTTTCGTTT+GGG + chr7.3:885371-885390 MS.gene050654:CDS 35.0%
AGTTAATGTCCTTGAGTGTT+GGG + chr7.3:885272-885291 MS.gene050654:CDS 35.0%
ATTATTCCTCGAGATGATGA+AGG + chr7.3:886483-886502 MS.gene050654:CDS 35.0%
CATATCAATCCATGTCAACA+AGG - chr7.3:885159-885178 None:intergenic 35.0%
CATTACAGACAGCTTAGATT+AGG + chr7.3:885397-885416 MS.gene050654:CDS 35.0%
CCACTTCTCCAAAAATTCAA+TGG - chr7.3:885359-885378 None:intergenic 35.0%
CTTGGTTTCCATTCAAGAAT+GGG + chr7.3:885816-885835 MS.gene050654:CDS 35.0%
GATTGGATCTTGAAAGTCAT+TGG + chr7.3:886289-886308 MS.gene050654:CDS 35.0%
GGAATAATAGGTCCATGAAA+TGG - chr7.3:886471-886490 None:intergenic 35.0%
TAAAAACAAACATCCTGACG+TGG + chr7.3:886056-886075 MS.gene050654:CDS 35.0%
TATCAATCCATGTCAACAAG+GGG - chr7.3:885157-885176 None:intergenic 35.0%
TCAAAAGTTTACTCCTCAGA+GGG - chr7.3:886191-886210 None:intergenic 35.0%
TCATCATCTCGAGGAATAAT+AGG - chr7.3:886483-886502 None:intergenic 35.0%
TCCTAACATACAAGCTAATG+TGG + chr7.3:885456-885475 MS.gene050654:CDS 35.0%
TTAAGGTTTGAGAAGCAAGT+CGG - chr7.3:884698-884717 None:intergenic 35.0%
TTATTCCTCGAGATGATGAA+GGG + chr7.3:886484-886503 MS.gene050654:CDS 35.0%
TTGGATCTTGAAAGTCATTG+GGG + chr7.3:886291-886310 MS.gene050654:CDS 35.0%
! ACACAATGATGCAGTTTTAC+GGG + chr7.3:886686-886705 MS.gene050654:CDS 35.0%
! AGGTAGTTTTTGATGCATTG+CGG + chr7.3:885764-885783 MS.gene050654:CDS 35.0%
! CATGGATTGATATGTGTTTC+AGG + chr7.3:885165-885184 MS.gene050654:intron 35.0%
! GGGTTCAAACAAGGTTTTTA+TGG + chr7.3:886254-886273 MS.gene050654:CDS 35.0%
! TCATGCGATCAAAGCTTTTT+AGG + chr7.3:885224-885243 MS.gene050654:CDS 35.0%
! TGAGCTTTAGTGTATTCTTC+AGG - chr7.3:885432-885451 None:intergenic 35.0%
!! CCATTGAATTTTTGGAGAAG+TGG + chr7.3:885356-885375 MS.gene050654:CDS 35.0%
!! GAAATCGCTTTTAGTACCAA+AGG - chr7.3:884936-884955 None:intergenic 35.0%
!! TCAACAAGGGGGTTTTATAT+TGG - chr7.3:885145-885164 None:intergenic 35.0%
!! TCCACATTAGCTTGTATGTT+AGG - chr7.3:885460-885479 None:intergenic 35.0%
!!! CGTTACTTTCTTTTTCAGCA+TGG - chr7.3:886799-886818 None:intergenic 35.0%
!!! TTTTCTTCATAAGGCATTGC+CGG - chr7.3:886372-886391 None:intergenic 35.0%
AAAAAAAGATGTGAGGAGGC+AGG + chr7.3:885934-885953 MS.gene050654:CDS 40.0%
AAAGAATTCAACATCGACCG+TGG - chr7.3:884815-884834 None:intergenic 40.0%
AAGAAGGCGAAAGAGAAGAA+GGG + chr7.3:884550-884569 MS.gene050654:CDS 40.0%
AAGCTAATGTGGAGAGGATT+CGG + chr7.3:885467-885486 MS.gene050654:CDS 40.0%
AATGGCCTTTGTACGCAAAA+GGG - chr7.3:885341-885360 None:intergenic 40.0%
ACATACAAGCTAATGTGGAG+AGG + chr7.3:885461-885480 MS.gene050654:CDS 40.0%
ACGCTTCATGAGATCCATTA+AGG - chr7.3:884715-884734 None:intergenic 40.0%
ACGGTCGATGTTGAATTCTT+TGG + chr7.3:884814-884833 MS.gene050654:intron 40.0%
AGAGAAGAAGGGAATGGAAA+AGG + chr7.3:884561-884580 MS.gene050654:CDS 40.0%
ATAAAACCCCCTTGTTGACA+TGG + chr7.3:885147-885166 MS.gene050654:intron 40.0%
ATCAATCCATGTCAACAAGG+GGG - chr7.3:885156-885175 None:intergenic 40.0%
ATCTTGAAAGTCATTGGGGT+AGG + chr7.3:886295-886314 MS.gene050654:CDS 40.0%
ATTCCTCTCGCTCTCTAATT+AGG + chr7.3:884759-884778 MS.gene050654:intron 40.0%
CAGTTAATGTCCTTGAGTGT+TGG + chr7.3:885271-885290 MS.gene050654:CDS 40.0%
CCTCCTCAAAGCAATCAAAA+CGG + chr7.3:884647-884666 MS.gene050654:CDS 40.0%
CTCATCATCTTCTCCAAAAG+CGG - chr7.3:886742-886761 None:intergenic 40.0%
GAAGTGGAATGTTTCGTTTG+GGG + chr7.3:885372-885391 MS.gene050654:CDS 40.0%
GACTCTCATTGTTGAGAGTT+TGG + chr7.3:885246-885265 MS.gene050654:CDS 40.0%
GAGAAGTGGAATGTTTCGTT+TGG + chr7.3:885370-885389 MS.gene050654:CDS 40.0%
GTCAAAAGTTTACTCCTCAG+AGG - chr7.3:886192-886211 None:intergenic 40.0%
TATTATCAGGCACACCAGAT+GGG - chr7.3:886038-886057 None:intergenic 40.0%
TCTTGAAAGTCATTGGGGTA+GGG + chr7.3:886296-886315 MS.gene050654:CDS 40.0%
TGTTCGTGAAACAGACAAGA+AGG + chr7.3:886599-886618 MS.gene050654:CDS 40.0%
TTATTATCAGGCACACCAGA+TGG - chr7.3:886039-886058 None:intergenic 40.0%
TTCCTCTCGCTCTCTAATTA+GGG + chr7.3:884760-884779 MS.gene050654:intron 40.0%
! ATTGATTTCCCCCATGAAGT+AGG - chr7.3:886158-886177 None:intergenic 40.0%
! CGTCAATTATTTGGAGTGCA+AGG - chr7.3:885198-885217 None:intergenic 40.0%
! GGTAGTTTTTGATGCATTGC+GGG + chr7.3:885765-885784 MS.gene050654:CDS 40.0%
! TCAAGAATGGGTTTCTGTTC+TGG + chr7.3:885828-885847 MS.gene050654:CDS 40.0%
! TGACGGGGAAGAAGATTTTT+GGG + chr7.3:885984-886003 MS.gene050654:CDS 40.0%
! TTGACGGGGAAGAAGATTTT+TGG + chr7.3:885983-886002 MS.gene050654:CDS 40.0%
!! AAGAAGATTTTTGGGAGGAG+GGG + chr7.3:885992-886011 MS.gene050654:CDS 40.0%
!! AGGGGGTTTTATATTGGACA+TGG - chr7.3:885139-885158 None:intergenic 40.0%
!! GAAGAAGATTTTTGGGAGGA+GGG + chr7.3:885991-886010 MS.gene050654:CDS 40.0%
!! GTCGTGAAGCATTGAATGAA+GGG + chr7.3:885713-885732 MS.gene050654:CDS 40.0%
!! TCGTGAAGCATTGAATGAAG+GGG + chr7.3:885714-885733 MS.gene050654:CDS 40.0%
!!! CTCAGAAGCTTTTGAGTTCA+CGG + chr7.3:886835-886854 MS.gene050654:CDS 40.0%
!!! TCAGAAGCTTTTGAGTTCAC+GGG + chr7.3:886836-886855 MS.gene050654:CDS 40.0%
!!! TTTTGATTGCTTTGAGGAGG+CGG - chr7.3:884647-884666 None:intergenic 40.0%
AAAGCTCCTGTGGTAAGATG+GGG + chr7.3:886213-886232 MS.gene050654:CDS 45.0%
AACACTGACAGCCTACTTCA+TGG + chr7.3:886144-886163 MS.gene050654:CDS 45.0%
AACCCTAATTAGAGAGCGAG+AGG - chr7.3:884765-884784 None:intergenic 45.0%
AATCAGAGTCAAACCCTCTG+AGG + chr7.3:886175-886194 MS.gene050654:CDS 45.0%
ACACTGACAGCCTACTTCAT+GGG + chr7.3:886145-886164 MS.gene050654:CDS 45.0%
AGAGATACTGTCTACGATGG+AGG + chr7.3:885579-885598 MS.gene050654:CDS 45.0%
ATGGAAAAGGAGCGAAGGTT+AGG + chr7.3:884574-884593 MS.gene050654:CDS 45.0%
ATTATCAGGCACACCAGATG+GGG - chr7.3:886037-886056 None:intergenic 45.0%
CAAAGCTCCTGTGGTAAGAT+GGG + chr7.3:886212-886231 MS.gene050654:CDS 45.0%
CAATGGCCTTTGTACGCAAA+AGG - chr7.3:885342-885361 None:intergenic 45.0%
CCTCAAAGCAATCAAAACGG+TGG + chr7.3:884650-884669 MS.gene050654:CDS 45.0%
CTACGATGGAGGAGATTGAT+GGG + chr7.3:885590-885609 MS.gene050654:CDS 45.0%
CTTAGACGATGAAGAGCTTG+AGG + chr7.3:885660-885679 MS.gene050654:CDS 45.0%
GAAGAAGGCGAAAGAGAAGA+AGG + chr7.3:884549-884568 MS.gene050654:CDS 45.0%
GGATACTTGGGGTTCAAACA+AGG + chr7.3:886245-886264 MS.gene050654:CDS 45.0%
GGGTTCTCACTTGGATACTT+GGG + chr7.3:886233-886252 MS.gene050654:CDS 45.0%
GGTTCTCACTTGGATACTTG+GGG + chr7.3:886234-886253 MS.gene050654:CDS 45.0%
GTATCCATTGAAACCCCATC+TGG + chr7.3:886021-886040 MS.gene050654:CDS 45.0%
TCGTGAAACAGACAAGAAGG+TGG + chr7.3:886602-886621 MS.gene050654:CDS 45.0%
TCTACGATGGAGGAGATTGA+TGG + chr7.3:885589-885608 MS.gene050654:CDS 45.0%
! ACTTCTGGTGACAAAGCACT+TGG + chr7.3:885798-885817 MS.gene050654:CDS 45.0%
! ACTTTTGACCAAAGCTCCTG+TGG + chr7.3:886203-886222 MS.gene050654:CDS 45.0%
! AGGTTTTTATGGCCAACCAG+CGG + chr7.3:886265-886284 MS.gene050654:CDS 45.0%
! AGTTTTACGGGATGCTGCAT+TGG + chr7.3:886698-886717 MS.gene050654:CDS 45.0%
! TGCATCCCTTTTGCGTACAA+AGG + chr7.3:885333-885352 MS.gene050654:CDS 45.0%
!! ACTTCAAGATCAGCCGCTTT+TGG + chr7.3:886726-886745 MS.gene050654:CDS 45.0%
!! CGCTTTTGGAGAAGATGATG+AGG + chr7.3:886740-886759 MS.gene050654:CDS 45.0%
!! CGTCGTGAAGCATTGAATGA+AGG + chr7.3:885712-885731 MS.gene050654:CDS 45.0%
!! GGAAGAAGATTTTTGGGAGG+AGG + chr7.3:885990-886009 MS.gene050654:CDS 45.0%
!! TGTCCTTGAGTGTTGGGTTT+CGG + chr7.3:885278-885297 MS.gene050654:CDS 45.0%
!!! CCACCGTTTTGATTGCTTTG+AGG - chr7.3:884653-884672 None:intergenic 45.0%
!!! CCGTTTTGATTGCTTTGAGG+AGG - chr7.3:884650-884669 None:intergenic 45.0%
AAAAGGGATGCAACAGACGG+AGG - chr7.3:885325-885344 None:intergenic 50.0%
AAAGGGATGCAACAGACGGA+GGG - chr7.3:885324-885343 None:intergenic 50.0%
ACTGACAGCCTACTTCATGG+GGG + chr7.3:886147-886166 MS.gene050654:CDS 50.0%
AGAGGATTCGGCAAGAGAGA+AGG + chr7.3:885479-885498 MS.gene050654:CDS 50.0%
AGCAAGTCGGAGCTCCAAAT+CGG - chr7.3:884685-884704 None:intergenic 50.0%
AGCTTCCCTTCATCATCTCG+AGG - chr7.3:886492-886511 None:intergenic 50.0%
AGGGAATGGAAAAGGAGCGA+AGG + chr7.3:884569-884588 MS.gene050654:CDS 50.0%
CACACCAGATGGGGTTTCAA+TGG - chr7.3:886028-886047 None:intergenic 50.0%
CACTGACAGCCTACTTCATG+GGG + chr7.3:886146-886165 MS.gene050654:CDS 50.0%
CCAAAGCTCCTGTGGTAAGA+TGG + chr7.3:886211-886230 MS.gene050654:CDS 50.0%
CCATCTTACCACAGGAGCTT+TGG - chr7.3:886214-886233 None:intergenic 50.0%
CGCAAAAGGGATGCAACAGA+CGG - chr7.3:885328-885347 None:intergenic 50.0%
GAGGATTCGGCAAGAGAGAA+GGG + chr7.3:885480-885499 MS.gene050654:CDS 50.0%
GCGGGAGCTATACAAACTTC+TGG + chr7.3:885783-885802 MS.gene050654:CDS 50.0%
GCTTGAGGACTTTCGCTCTT+TGG + chr7.3:885675-885694 MS.gene050654:CDS 50.0%
GGCGAAAGAGAAGAAGGGAA+TGG + chr7.3:884555-884574 MS.gene050654:CDS 50.0%
GGGAGAGATACTGTCTACGA+TGG + chr7.3:885576-885595 MS.gene050654:CDS 50.0%
GGGGTTCTCACTTGGATACT+TGG + chr7.3:886232-886251 MS.gene050654:CDS 50.0%
GGTAAGATGGGGTTCTCACT+TGG + chr7.3:886224-886243 MS.gene050654:CDS 50.0%
GGTGGTTCGTTACTCCGATT+TGG + chr7.3:884668-884687 MS.gene050654:CDS 50.0%
TGAGAAAAGGGGGACTCTGT+CGG + chr7.3:886424-886443 MS.gene050654:CDS 50.0%
TGAGAACCCCATCTTACCAC+AGG - chr7.3:886222-886241 None:intergenic 50.0%
TTTCAAGATCCAATCCCCGC+TGG - chr7.3:886284-886303 None:intergenic 50.0%
! CAGAGTCCCCCTTTTCTCAA+AGG - chr7.3:886423-886442 None:intergenic 50.0%
! CCCCTTTTCTCAAAGGAGCA+CGG - chr7.3:886416-886435 None:intergenic 50.0%
! CCGTGCTCCTTTGAGAAAAG+GGG + chr7.3:886413-886432 MS.gene050654:CDS 50.0%
! CGTGCTCCTTTGAGAAAAGG+GGG + chr7.3:886414-886433 MS.gene050654:CDS 50.0%
! GCCGTGCTCCTTTGAGAAAA+GGG + chr7.3:886412-886431 MS.gene050654:CDS 50.0%
! GGTTTTTATGGCCAACCAGC+GGG + chr7.3:886266-886285 MS.gene050654:CDS 50.0%
! GTTTTTATGGCCAACCAGCG+GGG + chr7.3:886267-886286 MS.gene050654:CDS 50.0%
! TGCCGTGCTCCTTTGAGAAA+AGG + chr7.3:886411-886430 MS.gene050654:CDS 50.0%
! TTTCTCAAAGGAGCACGGCA+TGG - chr7.3:886411-886430 None:intergenic 50.0%
!! CGGGGAAGAAGATTTTTGGG+AGG + chr7.3:885987-886006 MS.gene050654:CDS 50.0%
AAGATCCAATCCCCGCTGGT+TGG - chr7.3:886280-886299 None:intergenic 55.0%
AAGGGATGCAACAGACGGAG+GGG - chr7.3:885323-885342 None:intergenic 55.0%
AGAGAAGGGAGAGGGAGATG+AGG + chr7.3:885494-885513 MS.gene050654:CDS 55.0%
CATGAAGCGTGATCACTCCC+AGG + chr7.3:884725-884744 MS.gene050654:CDS 55.0%
GGCAACAAATTCCACCGCAC+CGG + chr7.3:884611-884630 MS.gene050654:CDS 55.0%
TCGCCGAAACCCAACACTCA+AGG - chr7.3:885284-885303 None:intergenic 55.0%
TCGGCAAGAGAGAAGGGAGA+GGG + chr7.3:885486-885505 MS.gene050654:CDS 55.0%
TTCGGCAAGAGAGAAGGGAG+AGG + chr7.3:885485-885504 MS.gene050654:CDS 55.0%
! TCAAAGGAGCACGGCATGGT+TGG - chr7.3:886407-886426 None:intergenic 55.0%
!! TGGGAAGTTGATGCCACGTC+AGG - chr7.3:886072-886091 None:intergenic 55.0%
AGGAGGCGGTGATCGACATC+CGG - chr7.3:884633-884652 None:intergenic 60.0%
ATGCAACAGACGGAGGGGCA+GGG - chr7.3:885318-885337 None:intergenic 60.0%
TATGGCCAACCAGCGGGGAT+TGG + chr7.3:886272-886291 MS.gene050654:CDS 60.0%
GATGCAACAGACGGAGGGGC+AGG - chr7.3:885319-885338 None:intergenic 65.0%
GCGGTGATCGACATCCGGTG+CGG - chr7.3:884628-884647 None:intergenic 65.0%
GTGATCGACATCCGGTGCGG+TGG - chr7.3:884625-884644 None:intergenic 65.0%
ACAGACGGAGGGGCAGGGAG+CGG - chr7.3:885313-885332 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 884546 886866 884546 ID=MS.gene050654
chr7.3 mRNA 884546 886866 884546 ID=MS.gene050654.t1;Parent=MS.gene050654
chr7.3 exon 884546 884746 884546 ID=MS.gene050654.t1.exon1;Parent=MS.gene050654.t1
chr7.3 CDS 884546 884746 884546 ID=cds.MS.gene050654.t1;Parent=MS.gene050654.t1
chr7.3 exon 885187 886866 885187 ID=MS.gene050654.t1.exon2;Parent=MS.gene050654.t1
chr7.3 CDS 885187 886866 885187 ID=cds.MS.gene050654.t1;Parent=MS.gene050654.t1
Gene Sequence

>MS.gene050654

ATGGAAGAAGGCGAAAGAGAAGAAGGGAATGGAAAAGGAGCGAAGGTTAGGTTTTTGATTGAAAAGGCAACAAATTCCACCGCACCGGATGTCGATCACCGCCTCCTCAAAGCAATCAAAACGGTGGTTCGTTACTCCGATTTGGAGCTCCGACTTGCTTCTCAAACCTTAATGGATCTCATGAAGCGTGATCACTCCCAGGTATTTTATTTAATTCCTCTCGCTCTCTAATTAGGGTTAACTCAATTATTTGATTCTTATAATTGCCACGGTCGATGTTGAATTCTTTGGATATTTTGGAATGAATTCTCTGATTACATCATGAAACTATACAAGAGAGGGTCTATCAAAAAATTGCTTTTGTTAGGTTCTGCCATCATAAAATTTCCTTTGGTACTAAAAGCGATTTCAACAATAGGTTTGAGTTAAAAATCAATTCTAGAATCAAAAGCTTCTCAAGTTAGAATCAATTTAGACGACTATCTAAGGAAAACTATATCAAAGGTAATAGGATGAGAGAATAAATGATGGAGAATAATCCTTATTGTAGATATAATCAACTCAAGTTTTTTATATTCAGATTAGAGCTGCCATGTCCAATATAAAACCCCCTTGTTGACATGGATTGATATGTGTTTCAGGTTAGGTACCTTGCACTCCAAATAATTGACGAACTCTTCATGCGATCAAAGCTTTTTAGGACTCTCATTGTTGAGAGTTTGGAACAGTTAATGTCCTTGAGTGTTGGGTTTCGGCGAAATTTGCCGCTCCCTGCCCCTCCGTCTGTTGCATCCCTTTTGCGTACAAAGGCCATTGAATTTTTGGAGAAGTGGAATGTTTCGTTTGGGGTTCATTACAGACAGCTTAGATTAGGCTATGATTACCTGAAGAATACACTAAAGCTCAAGTTTCCTAACATACAAGCTAATGTGGAGAGGATTCGGCAAGAGAGAAGGGAGAGGGAGATGAGGTCGAAAGAGATTTTGTTGAACAAGTATGAATCTTTGAAAGAGAAATTTTCTTCAATAAAGGGAGAGATACTGTCTACGATGGAGGAGATTGATGGGTGTTTAGACATTTTGCATTCAAAACAGGAACTCGAGTCAGATGATATCTTAGACGATGAAGAGCTTGAGGACTTTCGCTCTTTGGAGCTGCAGCAGCTTCGTCGTGAAGCATTGAATGAAGGGGAGAAAGTTTATGAAAGCAGTGATAACAAGGTAGTTTTTGATGCATTGCGGGAGCTATACAAACTTCTGGTGACAAAGCACTTGGTTTCCATTCAAGAATGGGTTTCTGTTCTGGTAAGAGTTGAAGTAGCTGACAATAGATTCAGAGATTCTACTTTGAAGGAGTTCATTGATATCCAAAACCGTGTTAAATCAGTTAAAAAAAGATGTGAGGAGGCAGGTTGTTCTTTTCTAAACTCATCAAAACTTGACGGGGAAGAAGATTTTTGGGAGGAGGGGAATGTTGTATCCATTGAAACCCCATCTGGTGTGCCTGATAATAAAAACAAACATCCTGACGTGGCATCAACTTCCCAAAATATGAGTAGTGATAAACTTGGTTCATGTGCTAAAGAGTCTAAAAGCTCTAACACTGACAGCCTACTTCATGGGGGAAATCAATCAGAGTCAAACCCTCTGAGGAGTAAACTTTTGACCAAAGCTCCTGTGGTAAGATGGGGTTCTCACTTGGATACTTGGGGTTCAAACAAGGTTTTTATGGCCAACCAGCGGGGATTGGATCTTGAAAGTCATTGGGGTAGGGTAGATGATGATGCAGTTATTCCATCAGATATAATTTCTGAATTGAGTGTTCCGGCAATGCCTTATGAAGAAAAGCAAATTGAGATCCAACCATGCCGTGCTCCTTTGAGAAAAGGGGGACTCTGTCGGAGAAGAGATATGAAAATTTGTCCATTTCATGGACCTATTATTCCTCGAGATGATGAAGGGAAGCTGCTTAGTGCAAGTCCTTCAGAAGACATGAATGTTAACATAACAAAGACTGATTTAGCTGAGAAGTTAGCAAAACAAGCAGTAAAGAATGTTCGTGAAACAGACAAGAAGGTGGCCAAGAAAAGAGAAATTGATAAACAGGAATTGAAACGTGCAAAACTTGCTAAAATTCGGGAACACAATGATGCAGTTTTACGGGATGCTGCATTGGCTTCAACTTCAAGATCAGCCGCTTTTGGAGAAGATGATGAGGTAACTAACAGAGACAAGAAAGCAAGTCTCGCGTCCATGCTGAAAAAGAAAGTAACGTCAAAAGATAGAATAGCTCAGAAGCTTTTGAGTTCACGGGCAAAGTAG

Protein sequence

>MS.gene050654.t1

MEEGEREEGNGKGAKVRFLIEKATNSTAPDVDHRLLKAIKTVVRYSDLELRLASQTLMDLMKRDHSQVRYLALQIIDELFMRSKLFRTLIVESLEQLMSLSVGFRRNLPLPAPPSVASLLRTKAIEFLEKWNVSFGVHYRQLRLGYDYLKNTLKLKFPNIQANVERIRQERREREMRSKEILLNKYESLKEKFSSIKGEILSTMEEIDGCLDILHSKQELESDDILDDEELEDFRSLELQQLRREALNEGEKVYESSDNKVVFDALRELYKLLVTKHLVSIQEWVSVLVRVEVADNRFRDSTLKEFIDIQNRVKSVKKRCEEAGCSFLNSSKLDGEEDFWEEGNVVSIETPSGVPDNKNKHPDVASTSQNMSSDKLGSCAKESKSSNTDSLLHGGNQSESNPLRSKLLTKAPVVRWGSHLDTWGSNKVFMANQRGLDLESHWGRVDDDAVIPSDIISELSVPAMPYEEKQIEIQPCRAPLRKGGLCRRRDMKICPFHGPIIPRDDEGKLLSASPSEDMNVNITKTDLAEKLAKQAVKNVRETDKKVAKKREIDKQELKRAKLAKIREHNDAVLRDAALASTSRSAAFGEDDEVTNRDKKASLASMLKKKVTSKDRIAQKLLSSRAK