Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95334.t1 | BBG98627.1 | 71.1 | 439 | 70 | 2 | 1 | 382 | 1 | 439 | 3.50E-169 | 604.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95334.t1 | P10978 | 30.5 | 501 | 267 | 11 | 7 | 442 | 5 | 489 | 1.8e-52 | 208.4 |
| MS.gene95334.t1 | P10978 | 35.6 | 216 | 110 | 5 | 264 | 459 | 935 | 1141 | 1.0e-23 | 112.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95334.t1 | A0A4Y1R3K4 | 71.1 | 439 | 70 | 2 | 1 | 382 | 1 | 439 | 2.6e-169 | 604.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052736 | MS.gene95334 | 0.802868 | 4.57E-49 | -1.69E-46 |
| MS.gene058292 | MS.gene95334 | 0.826759 | 2.27E-54 | -1.69E-46 |
| MS.gene060933 | MS.gene95334 | 0.817192 | 3.75E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95334.t1 | MTR_2g039140 | 40.217 | 184 | 77 | 2 | 1 | 183 | 120 | 271 | 4.39e-32 | 124 |
| MS.gene95334.t1 | MTR_4g036430 | 89.744 | 39 | 4 | 0 | 1 | 39 | 31 | 69 | 1.19e-18 | 80.5 |
| MS.gene95334.t1 | MTR_1g027280 | 32.667 | 150 | 95 | 2 | 225 | 368 | 103 | 252 | 1.51e-17 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95334.t1 | AT3G29785 | 57.778 | 90 | 37 | 1 | 11 | 100 | 7 | 95 | 5.30e-30 | 113 |
Find 108 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGATACCAATTGAACTTAAT+TGG | 0.076810 | 1.3:+18017167 | None:intergenic |
| AATTCTTGAAGAATTCTTTA+TGG | 0.165694 | 1.3:+18016657 | None:intergenic |
| CCGTCTGAGGTGATTGTTCT+TGG | 0.171668 | 1.3:+18015535 | None:intergenic |
| TCATCATCCTTCATCGATTC+TGG | 0.247368 | 1.3:+18017427 | None:intergenic |
| TTCGCCTCTTGATTCTTTGC+TGG | 0.253882 | 1.3:+18016794 | None:intergenic |
| TGACGCATTGATATGTTCTT+TGG | 0.284379 | 1.3:-18016735 | MS.gene95334:CDS |
| CAACGACGTGCTAACCGTTT+TGG | 0.291938 | 1.3:+18015578 | None:intergenic |
| ATTCCATATGCTTCAGCAAT+TGG | 0.349893 | 1.3:-18015486 | MS.gene95334:CDS |
| ATTCTTGAAGAATTCTTTAT+GGG | 0.356648 | 1.3:+18016658 | None:intergenic |
| CTTCCAATTGCTGAAGCATA+TGG | 0.367733 | 1.3:+18015483 | None:intergenic |
| TCGCCTCTTGATTCTTTGCT+GGG | 0.374564 | 1.3:+18016795 | None:intergenic |
| ATGGTGCGGACTTTGGCTTT+TGG | 0.377376 | 1.3:-18017513 | MS.gene95334:CDS |
| AATCTCTTGTGCCATAGATT+AGG | 0.388549 | 1.3:+18016323 | None:intergenic |
| GATACCAATTGAACTTAATT+GGG | 0.389115 | 1.3:+18017168 | None:intergenic |
| CAAATGAAAATCCTAATCTA+TGG | 0.391111 | 1.3:-18016334 | MS.gene95334:CDS |
| GTAAACTTTACCAAGGTTAC+CGG | 0.407938 | 1.3:+18016628 | None:intergenic |
| ACAACCCAATTAAGTTCAAT+TGG | 0.412295 | 1.3:-18017172 | MS.gene95334:CDS |
| ACAGTAGCACTCCAACTATC+TGG | 0.413891 | 1.3:+18017100 | None:intergenic |
| TGGAAATGAACAATCTTGTA+AGG | 0.417574 | 1.3:-18016603 | MS.gene95334:CDS |
| TGCTGAAGCATATGGAATCT+TGG | 0.418789 | 1.3:+18015491 | None:intergenic |
| TGTCTTCCCTACCAGATAGT+TGG | 0.424640 | 1.3:-18017111 | MS.gene95334:CDS |
| CCCACTGCATGGCCAATGTC+TGG | 0.427278 | 1.3:+18015432 | None:intergenic |
| CTCTGGTCTCTTACTCTAGC+AGG | 0.428476 | 1.3:+18015358 | None:intergenic |
| TTAAGTTGAATGGGTCTGTA+TGG | 0.429127 | 1.3:-18016556 | MS.gene95334:CDS |
| ATTTGACGATGTTCGTGATC+TGG | 0.433721 | 1.3:-18017038 | MS.gene95334:CDS |
| TGAACAATCTTGTAAGGTTG+TGG | 0.438789 | 1.3:-18016597 | MS.gene95334:CDS |
| TGTAGCCTTCGTCAGCCAAC+TGG | 0.439978 | 1.3:+18016477 | None:intergenic |
| CGTCTGAGGTGATTGTTCTT+GGG | 0.440972 | 1.3:+18015536 | None:intergenic |
| GAGATCCGACGGAGAGAGTT+GGG | 0.442215 | 1.3:-18017004 | MS.gene95334:CDS |
| GCAAATGTTGCTTCCACCTC+AGG | 0.445655 | 1.3:-18016764 | MS.gene95334:CDS |
| GAAGTTAAGATTAAGTTGAA+TGG | 0.447006 | 1.3:-18016566 | MS.gene95334:CDS |
| GGAGAGCAAGGAAGAGTCTT+GGG | 0.448480 | 1.3:-18016714 | MS.gene95334:CDS |
| CAGTCTTCCACGGTGATGAT+TGG | 0.449152 | 1.3:-18016451 | MS.gene95334:CDS |
| AAGTTCGATGGTGCGGACTT+TGG | 0.452497 | 1.3:-18017520 | MS.gene95334:CDS |
| CACAGCTGTGAGTGGCTCCT+CGG | 0.454182 | 1.3:-18017077 | MS.gene95334:CDS |
| AATCTATGGCACAAGAGATT+AGG | 0.468903 | 1.3:-18016320 | MS.gene95334:CDS |
| ACAGCTGTGAGTGGCTCCTC+GGG | 0.470989 | 1.3:-18017076 | MS.gene95334:CDS |
| TTAGGCCATATGAGTGAAAA+GGG | 0.472747 | 1.3:-18016302 | MS.gene95334:CDS |
| TGAACTTTATTTGATGCTGA+AGG | 0.474628 | 1.3:+18017274 | None:intergenic |
| AAGTTAAGATTAAGTTGAAT+GGG | 0.477594 | 1.3:-18016565 | MS.gene95334:CDS |
| TTGTTGTAACTGCAATCAAA+TGG | 0.485950 | 1.3:+18016354 | None:intergenic |
| TACAAGATTGTTCATTTCCA+AGG | 0.487050 | 1.3:+18016606 | None:intergenic |
| AACCTTGGTAAAGTTTACCT+TGG | 0.487612 | 1.3:-18016623 | MS.gene95334:CDS |
| ATTAGGCCATATGAGTGAAA+AGG | 0.493480 | 1.3:-18016303 | MS.gene95334:CDS |
| GAACAATCTTGTAAGGTTGT+GGG | 0.497160 | 1.3:-18016596 | MS.gene95334:CDS |
| TGGAGAGCAAGGAAGAGTCT+TGG | 0.501744 | 1.3:-18016715 | MS.gene95334:CDS |
| AATTATATCCCCGGTAACCT+TGG | 0.501940 | 1.3:-18016638 | MS.gene95334:CDS |
| TGAGGCGGTTGTTTACGCTT+CGG | 0.506448 | 1.3:-18017246 | MS.gene95334:CDS |
| GATGATTGGAAGATTTCAAA+AGG | 0.514140 | 1.3:-18016437 | MS.gene95334:CDS |
| GAGTCTTGGGTGTTAGACTC+TGG | 0.518950 | 1.3:-18016701 | MS.gene95334:CDS |
| CAACATGGGCGATGCCAAAA+CGG | 0.525887 | 1.3:-18015592 | MS.gene95334:CDS |
| GAGGTGATTGTTCTTGGGAT+AGG | 0.529200 | 1.3:+18015541 | None:intergenic |
| TATGAGTGAAAAGGGGATGA+AGG | 0.531430 | 1.3:-18016294 | MS.gene95334:intron |
| TTCGTCAGCCAACTGGCCTA+CGG | 0.532309 | 1.3:+18016484 | None:intergenic |
| CTTAATCTCCGTAGGCCAGT+TGG | 0.533019 | 1.3:-18016492 | MS.gene95334:CDS |
| CTTTGTATGCAATACTGAAG+AGG | 0.534584 | 1.3:+18016970 | None:intergenic |
| AAAGAAACCAGAATCGATGA+AGG | 0.539324 | 1.3:-18017434 | MS.gene95334:CDS |
| TGCGTCACCTCCTCCTGAGG+TGG | 0.540756 | 1.3:+18016751 | None:intergenic |
| TAAACTTTACCAAGGTTACC+GGG | 0.543499 | 1.3:+18016629 | None:intergenic |
| AGAGATCCGACGGAGAGAGT+TGG | 0.549236 | 1.3:-18017005 | MS.gene95334:CDS |
| GGTACTCTTTACAAGACAGC+TGG | 0.550162 | 1.3:-18016383 | MS.gene95334:CDS |
| CAAATAAAGTTCATTTGATG+AGG | 0.550433 | 1.3:-18017264 | MS.gene95334:CDS |
| TCTTGTAAGGTTGTGGGCAA+AGG | 0.550702 | 1.3:-18016590 | MS.gene95334:CDS |
| GCCAGACATTGGCCATGCAG+TGG | 0.553894 | 1.3:-18015433 | MS.gene95334:CDS |
| CCAGACATTGGCCATGCAGT+GGG | 0.555550 | 1.3:-18015432 | MS.gene95334:CDS |
| AACCACCGCTGGTCTTATGA+AGG | 0.557775 | 1.3:-18017320 | MS.gene95334:CDS |
| TAGCACTCCAACTATCTGGT+AGG | 0.558134 | 1.3:+18017104 | None:intergenic |
| TAAGTTGAATGGGTCTGTAT+GGG | 0.558149 | 1.3:-18016555 | MS.gene95334:CDS |
| TTTACGCTTCGGATGACAGA+AGG | 0.562705 | 1.3:-18017235 | MS.gene95334:CDS |
| GTGAAAATTGAAAAGTTCGA+TGG | 0.563926 | 1.3:-18017532 | MS.gene95334:CDS |
| GTTGCTTCCACCTCAGGAGG+AGG | 0.568689 | 1.3:-18016758 | MS.gene95334:CDS |
| GTCTGTACGAGGCCAGACAT+TGG | 0.576943 | 1.3:-18015444 | MS.gene95334:CDS |
| TGCTAACAACTCCCACTGCA+TGG | 0.579223 | 1.3:+18015421 | None:intergenic |
| TTCTTCAAGAATTATATCCC+CGG | 0.581954 | 1.3:-18016647 | MS.gene95334:CDS |
| GATATGTTCTTTGGAGAGCA+AGG | 0.586306 | 1.3:-18016726 | MS.gene95334:CDS |
| GATGACAGAAGGCGCATCAG+TGG | 0.593273 | 1.3:-18017224 | MS.gene95334:CDS |
| GCTACTGTCACAGCTGTGAG+TGG | 0.594785 | 1.3:-18017085 | MS.gene95334:CDS |
| TTCTCAGTGAAGAGATCCGA+CGG | 0.596721 | 1.3:-18017015 | MS.gene95334:CDS |
| AGCACTCCAACTATCTGGTA+GGG | 0.597976 | 1.3:+18017105 | None:intergenic |
| ATAAAGTTCATTTGATGAGG+CGG | 0.598437 | 1.3:-18017261 | MS.gene95334:CDS |
| CCAAGAACAATCACCTCAGA+CGG | 0.601832 | 1.3:-18015535 | MS.gene95334:CDS |
| CTTCTCGATAGACAAGCACT+TGG | 0.601850 | 1.3:-18017397 | MS.gene95334:CDS |
| TGGAAGTTTGATGTACGCAA+TGG | 0.603643 | 1.3:-18015466 | MS.gene95334:CDS |
| AATGTTGCTTCCACCTCAGG+AGG | 0.603928 | 1.3:-18016761 | MS.gene95334:CDS |
| AATCGATGAAGGATGATGAG+TGG | 0.606445 | 1.3:-18017423 | MS.gene95334:CDS |
| AATTGAAAAGTTCGATGGTG+CGG | 0.608192 | 1.3:-18017527 | MS.gene95334:CDS |
| GGCTACACAACAGTCTTCCA+CGG | 0.609498 | 1.3:-18016461 | MS.gene95334:CDS |
| CAAGTGCTTGTCTATCGAGA+AGG | 0.612004 | 1.3:+18017398 | None:intergenic |
| TATGGCTGCAGACGAAGGAA+AGG | 0.614378 | 1.3:-18017554 | MS.gene95334:CDS |
| TTCCAAGGTAAACTTTACCA+AGG | 0.615217 | 1.3:+18016621 | None:intergenic |
| GGAGTTATGGCTGCAGACGA+AGG | 0.617375 | 1.3:-18017559 | None:intergenic |
| ATTCACCCAACTCTCTCCGT+CGG | 0.618585 | 1.3:+18016999 | None:intergenic |
| AGCCTTCATAAGACCAGCGG+TGG | 0.620835 | 1.3:+18017318 | None:intergenic |
| GAATCAAGAGGCGAAAGATG+AGG | 0.623736 | 1.3:-18016786 | MS.gene95334:CDS |
| GCAAAAGAGAAAACCACCGC+TGG | 0.626545 | 1.3:-18017331 | MS.gene95334:CDS |
| CAATGCGTCACCTCCTCCTG+AGG | 0.628987 | 1.3:+18016748 | None:intergenic |
| TGGTATCGAATTTGACGATG+AGG | 0.629176 | 1.3:-18017152 | MS.gene95334:CDS |
| AGAACAATCACCTCAGACGG+AGG | 0.642335 | 1.3:-18015532 | MS.gene95334:CDS |
| ATAGCTCGCGGTAGAAAGAG+TGG | 0.649534 | 1.3:-18016404 | MS.gene95334:CDS |
| GTAGGCCAGTTGGCTGACGA+AGG | 0.651906 | 1.3:-18016482 | MS.gene95334:CDS |
| CAAAACGGTTAGCACGTCGT+TGG | 0.663704 | 1.3:-18015577 | MS.gene95334:CDS |
| GCTCCCAGCAAAGAATCAAG+AGG | 0.671318 | 1.3:-18016798 | MS.gene95334:CDS |
| AAATCTTCCAATCATCACCG+TGG | 0.678539 | 1.3:+18016444 | None:intergenic |
| TAGGCCATATGAGTGAAAAG+GGG | 0.691407 | 1.3:-18016301 | MS.gene95334:CDS |
| AAACTTTACCAAGGTTACCG+GGG | 0.698437 | 1.3:+18016630 | None:intergenic |
| TGTACGCAATGGTCTGTACG+AGG | 0.702527 | 1.3:-18015455 | MS.gene95334:CDS |
| AAGAGCCTTCATAAGACCAG+CGG | 0.707222 | 1.3:+18017315 | None:intergenic |
| GGTGCAATGACGATAGCTCG+CGG | 0.741901 | 1.3:-18016416 | MS.gene95334:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTCTTGAAGAATTCTTTA+TGG | + | chr1.3:18016267-18016286 | None:intergenic | 20.0% |
| !! | ATTCTTGAAGAATTCTTTAT+GGG | + | chr1.3:18016266-18016285 | None:intergenic | 20.0% |
| !!! | AAGTTAAGATTAAGTTGAAT+GGG | - | chr1.3:18016356-18016375 | MS.gene95334:CDS | 20.0% |
| ! | ATATGTGAAGACTATATACT+TGG | - | chr1.3:18016700-18016719 | MS.gene95334:CDS | 25.0% |
| ! | CAAATAAAGTTCATTTGATG+AGG | - | chr1.3:18015657-18015676 | MS.gene95334:intron | 25.0% |
| ! | CAAATGAAAATCCTAATCTA+TGG | - | chr1.3:18016587-18016606 | MS.gene95334:CDS | 25.0% |
| ! | GATACCAATTGAACTTAATT+GGG | + | chr1.3:18015756-18015775 | None:intergenic | 25.0% |
| !!! | GAAGTTAAGATTAAGTTGAA+TGG | - | chr1.3:18016355-18016374 | MS.gene95334:CDS | 25.0% |
| ACAACCCAATTAAGTTCAAT+TGG | - | chr1.3:18015749-18015768 | MS.gene95334:intron | 30.0% | |
| ATAAAGTTCATTTGATGAGG+CGG | - | chr1.3:18015660-18015679 | MS.gene95334:intron | 30.0% | |
| CGATACCAATTGAACTTAAT+TGG | + | chr1.3:18015757-18015776 | None:intergenic | 30.0% | |
| GATGATTGGAAGATTTCAAA+AGG | - | chr1.3:18016484-18016503 | MS.gene95334:CDS | 30.0% | |
| GTATTGCATACAAAGTAAAG+AGG | - | chr1.3:18015959-18015978 | MS.gene95334:intron | 30.0% | |
| GTGAAAATTGAAAAGTTCGA+TGG | - | chr1.3:18015389-18015408 | MS.gene95334:CDS | 30.0% | |
| TACAAGATTGTTCATTTCCA+AGG | + | chr1.3:18016318-18016337 | None:intergenic | 30.0% | |
| TGGAAATGAACAATCTTGTA+AGG | - | chr1.3:18016318-18016337 | MS.gene95334:CDS | 30.0% | |
| TTCTTCAAGAATTATATCCC+CGG | - | chr1.3:18016274-18016293 | MS.gene95334:intron | 30.0% | |
| TTGTTGTAACTGCAATCAAA+TGG | + | chr1.3:18016570-18016589 | None:intergenic | 30.0% | |
| ! | GTTTTGCAAAGATTCAACAT+GGG | - | chr1.3:18017315-18017334 | MS.gene95334:CDS | 30.0% |
| ! | TGAACTTTATTTGATGCTGA+AGG | + | chr1.3:18015650-18015669 | None:intergenic | 30.0% |
| ! | TGTTTTGCAAAGATTCAACA+TGG | - | chr1.3:18017314-18017333 | MS.gene95334:CDS | 30.0% |
| AAAGAAACCAGAATCGATGA+AGG | - | chr1.3:18015487-18015506 | MS.gene95334:CDS | 35.0% | |
| AAATGGACGTGGTAAATCAA+AGG | - | chr1.3:18016000-18016019 | MS.gene95334:intron | 35.0% | |
| AACCTTGGTAAAGTTTACCT+TGG | - | chr1.3:18016298-18016317 | MS.gene95334:CDS | 35.0% | |
| AAGGAAAACTACCAAGTCTT+CGG | - | chr1.3:18016662-18016681 | MS.gene95334:CDS | 35.0% | |
| AATCTATGGCACAAGAGATT+AGG | - | chr1.3:18016601-18016620 | MS.gene95334:CDS | 35.0% | |
| AATCTCTTGTGCCATAGATT+AGG | + | chr1.3:18016601-18016620 | None:intergenic | 35.0% | |
| AATTGAAAAGTTCGATGGTG+CGG | - | chr1.3:18015394-18015413 | MS.gene95334:CDS | 35.0% | |
| ACGAAAAACTTAATCTCCGT+AGG | - | chr1.3:18016421-18016440 | MS.gene95334:CDS | 35.0% | |
| ACTCAAAATCTATCGAGTGT+TGG | - | chr1.3:18016062-18016081 | MS.gene95334:intron | 35.0% | |
| AGAAATTCAACCAGAGGAAA+TGG | - | chr1.3:18015983-18016002 | MS.gene95334:intron | 35.0% | |
| ATAGTCAGCTTTCAGATAAG+TGG | - | chr1.3:18016733-18016752 | MS.gene95334:CDS | 35.0% | |
| ATATACATGCACCAATCAGA+AGG | - | chr1.3:18016920-18016939 | MS.gene95334:intron | 35.0% | |
| ATCACGAGAGATAAGCAAAA+AGG | - | chr1.3:18017255-18017274 | MS.gene95334:CDS | 35.0% | |
| ATCTCTTGAAGAAGCAACAA+TGG | + | chr1.3:18017083-18017102 | None:intergenic | 35.0% | |
| ATGAAGGTTATGCACTCAAA+AGG | - | chr1.3:18016643-18016662 | MS.gene95334:CDS | 35.0% | |
| ATTAGGCCATATGAGTGAAA+AGG | - | chr1.3:18016618-18016637 | MS.gene95334:CDS | 35.0% | |
| ATTCCATATGCTTCAGCAAT+TGG | - | chr1.3:18017435-18017454 | MS.gene95334:CDS | 35.0% | |
| ATTTCTATTGACCGAAGACT+TGG | + | chr1.3:18016676-18016695 | None:intergenic | 35.0% | |
| CAGAAGAAGTGAAGAGAATA+TGG | - | chr1.3:18016948-18016967 | MS.gene95334:intron | 35.0% | |
| CTTTGTATGCAATACTGAAG+AGG | + | chr1.3:18015954-18015973 | None:intergenic | 35.0% | |
| GAACAATCTTGTAAGGTTGT+GGG | - | chr1.3:18016325-18016344 | MS.gene95334:CDS | 35.0% | |
| GACACTTCAAAAATCAGTGT+AGG | - | chr1.3:18016101-18016120 | MS.gene95334:intron | 35.0% | |
| GAGTTTGACATGAAGGATTT+AGG | - | chr1.3:18017204-18017223 | MS.gene95334:CDS | 35.0% | |
| GTAAACTTTACCAAGGTTAC+CGG | + | chr1.3:18016296-18016315 | None:intergenic | 35.0% | |
| GTCAAAAGAGTTTGACATGA+AGG | - | chr1.3:18017197-18017216 | MS.gene95334:CDS | 35.0% | |
| TAAACTTTACCAAGGTTACC+GGG | + | chr1.3:18016295-18016314 | None:intergenic | 35.0% | |
| TGAACAATCTTGTAAGGTTG+TGG | - | chr1.3:18016324-18016343 | MS.gene95334:CDS | 35.0% | |
| TTAGGCCATATGAGTGAAAA+GGG | - | chr1.3:18016619-18016638 | MS.gene95334:CDS | 35.0% | |
| TTCCAAGGTAAACTTTACCA+AGG | + | chr1.3:18016303-18016322 | None:intergenic | 35.0% | |
| ! | ACTACGATGATTTCTGGATT+TGG | + | chr1.3:18016035-18016054 | None:intergenic | 35.0% |
| ! | ATTAAGTTTTTCGTGAGGTC+GGG | + | chr1.3:18016415-18016434 | None:intergenic | 35.0% |
| ! | GATTAAGTTTTTCGTGAGGT+CGG | + | chr1.3:18016416-18016435 | None:intergenic | 35.0% |
| ! | TAAGTTGAATGGGTCTGTAT+GGG | - | chr1.3:18016366-18016385 | MS.gene95334:CDS | 35.0% |
| ! | TGACGCATTGATATGTTCTT+TGG | - | chr1.3:18016186-18016205 | MS.gene95334:intron | 35.0% |
| !! | GTTGATGATATGTTAGTAGC+AGG | - | chr1.3:18017135-18017154 | MS.gene95334:CDS | 35.0% |
| !! | TTAAGTTGAATGGGTCTGTA+TGG | - | chr1.3:18016365-18016384 | MS.gene95334:CDS | 35.0% |
| AAACTTTACCAAGGTTACCG+GGG | + | chr1.3:18016294-18016313 | None:intergenic | 40.0% | |
| AAATCTTCCAATCATCACCG+TGG | + | chr1.3:18016480-18016499 | None:intergenic | 40.0% | |
| AACTTCATATACCACTGCCT+TGG | + | chr1.3:18017015-18017034 | None:intergenic | 40.0% | |
| AATCGATGAAGGATGATGAG+TGG | - | chr1.3:18015498-18015517 | MS.gene95334:CDS | 40.0% | |
| AATTATATCCCCGGTAACCT+TGG | - | chr1.3:18016283-18016302 | MS.gene95334:intron | 40.0% | |
| AGAGGAAGAAATTCAACCAG+AGG | - | chr1.3:18015977-18015996 | MS.gene95334:intron | 40.0% | |
| AGGCTAAAGAAGAGCTTGTA+TGG | - | chr1.3:18016976-18016995 | MS.gene95334:CDS | 40.0% | |
| ATTTGACGATGTTCGTGATC+TGG | - | chr1.3:18015883-18015902 | MS.gene95334:intron | 40.0% | |
| CTGAGAACTACGATGATTTC+TGG | + | chr1.3:18016041-18016060 | None:intergenic | 40.0% | |
| CTTCCAATTGCTGAAGCATA+TGG | + | chr1.3:18017441-18017460 | None:intergenic | 40.0% | |
| CTTGAAGAAGCAACAATGGT+CGG | + | chr1.3:18017079-18017098 | None:intergenic | 40.0% | |
| GGAGGAAGAAAAAGAACTCA+TGG | - | chr1.3:18017407-18017426 | MS.gene95334:CDS | 40.0% | |
| GGTACAAGTATACATGTGTG+TGG | - | chr1.3:18016873-18016892 | MS.gene95334:intron | 40.0% | |
| GGTCAGGCAAAGAAAATTCT+TGG | - | chr1.3:18017225-18017244 | MS.gene95334:CDS | 40.0% | |
| GTTTGAAAGCTTCATGCACA+AGG | - | chr1.3:18017032-18017051 | MS.gene95334:CDS | 40.0% | |
| TAGGCCATATGAGTGAAAAG+GGG | - | chr1.3:18016620-18016639 | MS.gene95334:CDS | 40.0% | |
| TATGAGTGAAAAGGGGATGA+AGG | - | chr1.3:18016627-18016646 | MS.gene95334:CDS | 40.0% | |
| TGACATGAAGGATTTAGGTC+AGG | - | chr1.3:18017209-18017228 | MS.gene95334:CDS | 40.0% | |
| TGCATGTATATCTCCTCAAG+CGG | + | chr1.3:18016911-18016930 | None:intergenic | 40.0% | |
| TGCTGAAGCATATGGAATCT+TGG | + | chr1.3:18017433-18017452 | None:intergenic | 40.0% | |
| TGGAAGTTTGATGTACGCAA+TGG | - | chr1.3:18017455-18017474 | MS.gene95334:CDS | 40.0% | |
| TGTTGGAATTGTGGAAAGAC+AGG | - | chr1.3:18016079-18016098 | MS.gene95334:intron | 40.0% | |
| ! | CGGAGATTAAGTTTTTCGTG+AGG | + | chr1.3:18016420-18016439 | None:intergenic | 40.0% |
| ! | CTTCTGAGAATCCTTCTGAT+TGG | + | chr1.3:18016934-18016953 | None:intergenic | 40.0% |
| ! | GATATGTTCTTTGGAGAGCA+AGG | - | chr1.3:18016195-18016214 | MS.gene95334:intron | 40.0% |
| ! | TCATCCCCTTTTCACTCATA+TGG | + | chr1.3:18016627-18016646 | None:intergenic | 40.0% |
| ! | TGGTATCGAATTTGACGATG+AGG | - | chr1.3:18015769-18015788 | MS.gene95334:intron | 40.0% |
| ! | TTTCATCTTTTTGCTTCCCG+AGG | + | chr1.3:18015864-18015883 | None:intergenic | 40.0% |
| !! | TCATCATCCTTCATCGATTC+TGG | + | chr1.3:18015497-18015516 | None:intergenic | 40.0% |
| !! | TCTATCGAGTGTTGGAATTG+TGG | - | chr1.3:18016070-18016089 | MS.gene95334:intron | 40.0% |
| !! | TCTGGTTTCTTTTCTGTGAG+AGG | + | chr1.3:18015479-18015498 | None:intergenic | 40.0% |
| AAACCACGACTCTCCTTCTT+TGG | + | chr1.3:18016766-18016785 | None:intergenic | 45.0% | |
| AACCACGACTCTCCTTCTTT+GGG | + | chr1.3:18016765-18016784 | None:intergenic | 45.0% | |
| AAGAGCCTTCATAAGACCAG+CGG | + | chr1.3:18015609-18015628 | None:intergenic | 45.0% | |
| AAGTGGAAGAACCCCAAAGA+AGG | - | chr1.3:18016750-18016769 | MS.gene95334:CDS | 45.0% | |
| ACAGTAGCACTCCAACTATC+TGG | + | chr1.3:18015824-18015843 | None:intergenic | 45.0% | |
| AGCACTCCAACTATCTGGTA+GGG | + | chr1.3:18015819-18015838 | None:intergenic | 45.0% | |
| CAAGTGCTTGTCTATCGAGA+AGG | + | chr1.3:18015526-18015545 | None:intergenic | 45.0% | |
| CCAAGAACAATCACCTCAGA+CGG | - | chr1.3:18017386-18017405 | MS.gene95334:CDS | 45.0% | |
| CTTCTCGATAGACAAGCACT+TGG | - | chr1.3:18015524-18015543 | MS.gene95334:CDS | 45.0% | |
| GAAAGCTTCATGCACAAGGA+AGG | - | chr1.3:18017036-18017055 | MS.gene95334:CDS | 45.0% | |
| GAATCAAGAGGCGAAAGATG+AGG | - | chr1.3:18016135-18016154 | MS.gene95334:intron | 45.0% | |
| GAGGTGATTGTTCTTGGGAT+AGG | + | chr1.3:18017383-18017402 | None:intergenic | 45.0% | |
| GGTACTCTTTACAAGACAGC+TGG | - | chr1.3:18016538-18016557 | MS.gene95334:CDS | 45.0% | |
| GTGAAGAGAATATGGTGTGC+AGG | - | chr1.3:18016956-18016975 | MS.gene95334:intron | 45.0% | |
| TAGCACTCCAACTATCTGGT+AGG | + | chr1.3:18015820-18015839 | None:intergenic | 45.0% | |
| TCGCCTCTTGATTCTTTGCT+GGG | + | chr1.3:18016129-18016148 | None:intergenic | 45.0% | |
| TCTTGTAAGGTTGTGGGCAA+AGG | - | chr1.3:18016331-18016350 | MS.gene95334:CDS | 45.0% | |
| TGTCTTCCCTACCAGATAGT+TGG | - | chr1.3:18015810-18015829 | MS.gene95334:intron | 45.0% | |
| TTCGCCTCTTGATTCTTTGC+TGG | + | chr1.3:18016130-18016149 | None:intergenic | 45.0% | |
| TTCTCAGTGAAGAGATCCGA+CGG | - | chr1.3:18015906-18015925 | MS.gene95334:intron | 45.0% | |
| TTTACCACGTCCATTTCCTC+TGG | + | chr1.3:18015996-18016015 | None:intergenic | 45.0% | |
| TTTACGCTTCGGATGACAGA+AGG | - | chr1.3:18015686-18015705 | MS.gene95334:intron | 45.0% | |
| ! | CGTCTGAGGTGATTGTTCTT+GGG | + | chr1.3:18017388-18017407 | None:intergenic | 45.0% |
| ! | TCTTTTTCTTCCTCCGTCTG+AGG | + | chr1.3:18017402-18017421 | None:intergenic | 45.0% |
| AAGTTCGATGGTGCGGACTT+TGG | - | chr1.3:18015401-18015420 | MS.gene95334:CDS | 50.0% | |
| AATGGTCGGCATTGCACTTC+TGG | + | chr1.3:18017065-18017084 | None:intergenic | 50.0% | |
| ACCACGACTCTCCTTCTTTG+GGG | + | chr1.3:18016764-18016783 | None:intergenic | 50.0% | |
| AGAACAATCACCTCAGACGG+AGG | - | chr1.3:18017389-18017408 | MS.gene95334:CDS | 50.0% | |
| ATAGCTCGCGGTAGAAAGAG+TGG | - | chr1.3:18016517-18016536 | MS.gene95334:CDS | 50.0% | |
| ATGGCCTGAAACAAGCTCCA+AGG | - | chr1.3:18016995-18017014 | MS.gene95334:CDS | 50.0% | |
| ATTCACCCAACTCTCTCCGT+CGG | + | chr1.3:18015925-18015944 | None:intergenic | 50.0% | |
| CAAAACGGTTAGCACGTCGT+TGG | - | chr1.3:18017344-18017363 | MS.gene95334:CDS | 50.0% | |
| CAACATGGGCGATGCCAAAA+CGG | - | chr1.3:18017329-18017348 | MS.gene95334:CDS | 50.0% | |
| CAGTCTTCCACGGTGATGAT+TGG | - | chr1.3:18016470-18016489 | MS.gene95334:CDS | 50.0% | |
| CTTAATCTCCGTAGGCCAGT+TGG | - | chr1.3:18016429-18016448 | MS.gene95334:CDS | 50.0% | |
| GAGAGTCGTGGTTTGACGAA+AGG | - | chr1.3:18016772-18016791 | MS.gene95334:CDS | 50.0% | |
| GAGTCTTGGGTGTTAGACTC+TGG | - | chr1.3:18016220-18016239 | MS.gene95334:intron | 50.0% | |
| GATGAAAGAGCTTCCGCTTG+AGG | - | chr1.3:18016895-18016914 | MS.gene95334:intron | 50.0% | |
| GCAAAAGAGAAAACCACCGC+TGG | - | chr1.3:18015590-18015609 | MS.gene95334:CDS | 50.0% | |
| GCTCCCAGCAAAGAATCAAG+AGG | - | chr1.3:18016123-18016142 | MS.gene95334:intron | 50.0% | |
| GGAGAGCAAGGAAGAGTCTT+GGG | - | chr1.3:18016207-18016226 | MS.gene95334:intron | 50.0% | |
| GGCTACACAACAGTCTTCCA+CGG | - | chr1.3:18016460-18016479 | MS.gene95334:CDS | 50.0% | |
| GGTTTGACGAAAGGTTCGAC+CGG | - | chr1.3:18016781-18016800 | MS.gene95334:CDS | 50.0% | |
| TCAACCAGAGGAAATGGACG+TGG | - | chr1.3:18015989-18016008 | MS.gene95334:intron | 50.0% | |
| TCAGGAGGACTTTCGACACA+AGG | + | chr1.3:18016809-18016828 | None:intergenic | 50.0% | |
| TGAAACAAGCTCCAAGGCAG+TGG | - | chr1.3:18017001-18017020 | MS.gene95334:CDS | 50.0% | |
| TGAGGCGGTTGTTTACGCTT+CGG | - | chr1.3:18015675-18015694 | MS.gene95334:intron | 50.0% | |
| TGCTAACAACTCCCACTGCA+TGG | + | chr1.3:18017503-18017522 | None:intergenic | 50.0% | |
| TGGAGAGCAAGGAAGAGTCT+TGG | - | chr1.3:18016206-18016225 | MS.gene95334:intron | 50.0% | |
| TGTACGCAATGGTCTGTACG+AGG | - | chr1.3:18017466-18017485 | MS.gene95334:CDS | 50.0% | |
| TGTTCCGTTGAGTGCAGCAA+CGG | - | chr1.3:18016849-18016868 | MS.gene95334:intron | 50.0% | |
| ! | AATGTTGCTTCCACCTCAGG+AGG | - | chr1.3:18016160-18016179 | MS.gene95334:intron | 50.0% |
| ! | ACTGCCTTGGAGCTTGTTTC+AGG | + | chr1.3:18017002-18017021 | None:intergenic | 50.0% |
| ! | CAACGACGTGCTAACCGTTT+TGG | + | chr1.3:18017346-18017365 | None:intergenic | 50.0% |
| ! | CCGTCTGAGGTGATTGTTCT+TGG | + | chr1.3:18017389-18017408 | None:intergenic | 50.0% |
| ! | GCAAATGTTGCTTCCACCTC+AGG | - | chr1.3:18016157-18016176 | MS.gene95334:intron | 50.0% |
| !! | AACCACCGCTGGTCTTATGA+AGG | - | chr1.3:18015601-18015620 | MS.gene95334:CDS | 50.0% |
| !!! | ATGGTGCGGACTTTGGCTTT+TGG | - | chr1.3:18015408-18015427 | MS.gene95334:CDS | 50.0% |
| ACCCCAAAGAAGGAGAGTCG+TGG | - | chr1.3:18016760-18016779 | MS.gene95334:CDS | 55.0% | |
| AGAGATCCGACGGAGAGAGT+TGG | - | chr1.3:18015916-18015935 | MS.gene95334:intron | 55.0% | |
| AGCCTTCATAAGACCAGCGG+TGG | + | chr1.3:18015606-18015625 | None:intergenic | 55.0% | |
| CCAGACATTGGCCATGCAGT+GGG | - | chr1.3:18017489-18017508 | MS.gene95334:CDS | 55.0% | |
| CCTCCTGACCAAGTGTGTTC+AGG | - | chr1.3:18016821-18016840 | MS.gene95334:intron | 55.0% | |
| CCTGAACACACTTGGTCAGG+AGG | + | chr1.3:18016824-18016843 | None:intergenic | 55.0% | |
| CCTGACCAAGTGTGTTCAGG+CGG | - | chr1.3:18016824-18016843 | MS.gene95334:intron | 55.0% | |
| GAGATCCGACGGAGAGAGTT+GGG | - | chr1.3:18015917-18015936 | MS.gene95334:intron | 55.0% | |
| GCTACTGTCACAGCTGTGAG+TGG | - | chr1.3:18015836-18015855 | MS.gene95334:intron | 55.0% | |
| GGACTTTCGACACAAGGAGC+CGG | + | chr1.3:18016803-18016822 | None:intergenic | 55.0% | |
| GGTGCAATGACGATAGCTCG+CGG | - | chr1.3:18016505-18016524 | MS.gene95334:CDS | 55.0% | |
| GTCTGTACGAGGCCAGACAT+TGG | - | chr1.3:18017477-18017496 | MS.gene95334:CDS | 55.0% | |
| TGTAGCCTTCGTCAGCCAAC+TGG | + | chr1.3:18016447-18016466 | None:intergenic | 55.0% | |
| ! | GATGACAGAAGGCGCATCAG+TGG | - | chr1.3:18015697-18015716 | MS.gene95334:intron | 55.0% |
| ! | TTCGTCAGCCAACTGGCCTA+CGG | + | chr1.3:18016440-18016459 | None:intergenic | 55.0% |
| ACACGCCGCCTGAACACACT+TGG | + | chr1.3:18016832-18016851 | None:intergenic | 60.0% | |
| ACAGCTGTGAGTGGCTCCTC+GGG | - | chr1.3:18015845-18015864 | MS.gene95334:intron | 60.0% | |
| ACCGCCGTTGCTGCACTCAA+CGG | + | chr1.3:18016856-18016875 | None:intergenic | 60.0% | |
| CAATGCGTCACCTCCTCCTG+AGG | + | chr1.3:18016176-18016195 | None:intergenic | 60.0% | |
| CACAGCTGTGAGTGGCTCCT+CGG | - | chr1.3:18015844-18015863 | MS.gene95334:intron | 60.0% | |
| CCCACTGCATGGCCAATGTC+TGG | + | chr1.3:18017492-18017511 | None:intergenic | 60.0% | |
| CCGCCTGAACACACTTGGTC+AGG | + | chr1.3:18016827-18016846 | None:intergenic | 60.0% | |
| GCCAGACATTGGCCATGCAG+TGG | - | chr1.3:18017488-18017507 | MS.gene95334:CDS | 60.0% | |
| GTAGGCCAGTTGGCTGACGA+AGG | - | chr1.3:18016439-18016458 | MS.gene95334:CDS | 60.0% | |
| GTTGCTTCCACCTCAGGAGG+AGG | - | chr1.3:18016163-18016182 | MS.gene95334:intron | 60.0% | |
| TCCGTTGAGTGCAGCAACGG+CGG | - | chr1.3:18016852-18016871 | MS.gene95334:intron | 60.0% | |
| TGCGTCACCTCCTCCTGAGG+TGG | + | chr1.3:18016173-18016192 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 18015368 | 18017575 | 18015368 | ID=MS.gene95334 |
| chr1.3 | mRNA | 18015368 | 18017575 | 18015368 | ID=MS.gene95334.t1;Parent=MS.gene95334 |
| chr1.3 | exon | 18016971 | 18017575 | 18016971 | ID=MS.gene95334.t1.exon1;Parent=MS.gene95334.t1 |
| chr1.3 | CDS | 18016971 | 18017575 | 18016971 | ID=cds.MS.gene95334.t1;Parent=MS.gene95334.t1 |
| chr1.3 | exon | 18016295 | 18016820 | 18016295 | ID=MS.gene95334.t1.exon2;Parent=MS.gene95334.t1 |
| chr1.3 | CDS | 18016295 | 18016820 | 18016295 | ID=cds.MS.gene95334.t1;Parent=MS.gene95334.t1 |
| chr1.3 | exon | 18015368 | 18015655 | 18015368 | ID=MS.gene95334.t1.exon3;Parent=MS.gene95334.t1 |
| chr1.3 | CDS | 18015368 | 18015655 | 18015368 | ID=cds.MS.gene95334.t1;Parent=MS.gene95334.t1 |
| Gene Sequence |
| Protein sequence |
