Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95367.t1 | XP_013466649.1 | 89.1 | 211 | 23 | 0 | 1 | 211 | 1 | 211 | 4.50E-100 | 374 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95367.t1 | Q67ZF6 | 50.0 | 202 | 100 | 1 | 9 | 210 | 20 | 220 | 2.2e-55 | 216.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95367.t1 | A0A072VRC8 | 89.1 | 211 | 23 | 0 | 1 | 211 | 1 | 211 | 3.3e-100 | 374.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene78729 | MS.gene95367 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95367.t1 | MTR_1g033390 | 89.100 | 211 | 23 | 0 | 1 | 211 | 1 | 211 | 2.23e-135 | 378 |
| MS.gene95367.t1 | MTR_1g033360 | 43.216 | 199 | 112 | 1 | 10 | 208 | 16 | 213 | 6.68e-56 | 177 |
| MS.gene95367.t1 | MTR_1g100643 | 39.048 | 210 | 125 | 1 | 1 | 207 | 5 | 214 | 6.52e-55 | 175 |
| MS.gene95367.t1 | MTR_6g017105 | 37.436 | 195 | 118 | 1 | 14 | 204 | 19 | 213 | 3.25e-42 | 142 |
| MS.gene95367.t1 | MTR_1g100643 | 39.130 | 161 | 95 | 1 | 50 | 207 | 1 | 161 | 1.40e-39 | 134 |
| MS.gene95367.t1 | MTR_5g053250 | 35.762 | 151 | 92 | 2 | 45 | 191 | 56 | 205 | 8.85e-28 | 105 |
| MS.gene95367.t1 | MTR_5g053250 | 35.616 | 146 | 89 | 2 | 50 | 191 | 1 | 145 | 9.76e-26 | 99.0 |
| MS.gene95367.t1 | MTR_5g053250 | 29.032 | 217 | 118 | 5 | 10 | 191 | 17 | 232 | 5.67e-22 | 90.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95367.t1 | AT1G14730 | 50.000 | 202 | 100 | 1 | 9 | 210 | 20 | 220 | 2.66e-73 | 221 |
| MS.gene95367.t1 | AT4G25570 | 36.449 | 214 | 133 | 1 | 1 | 211 | 5 | 218 | 4.47e-53 | 171 |
| MS.gene95367.t1 | AT4G25570 | 36.449 | 214 | 133 | 1 | 1 | 211 | 46 | 259 | 3.56e-52 | 169 |
| MS.gene95367.t1 | AT5G38630 | 37.811 | 201 | 118 | 2 | 15 | 208 | 17 | 217 | 3.50e-45 | 150 |
| MS.gene95367.t1 | AT1G26100 | 33.523 | 176 | 105 | 4 | 10 | 183 | 15 | 180 | 9.58e-25 | 97.4 |
Find 46 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTGCTTGTTTGGTTTGC+AGG | 0.165329 | 1.3:-18508390 | MS.gene95367:intron |
| TTAAAATTTAACAGCTATTA+TGG | 0.166099 | 1.3:-18508582 | MS.gene95367:intron |
| CCGCATCTTTACAGTCTTCA+TGG | 0.276421 | 1.3:-18508431 | MS.gene95367:CDS |
| TTGGTTACATTCTTGGTTCC+TGG | 0.284163 | 1.3:-18507986 | MS.gene95367:CDS |
| GCAATATGTGCTGCATTAAC+AGG | 0.288180 | 1.3:-18507893 | MS.gene95367:CDS |
| GGTCTTTCAATTCTATTGTT+TGG | 0.306287 | 1.3:-18507800 | MS.gene95367:CDS |
| CTTCACCAGCAAGGAAAATA+AGG | 0.306596 | 1.3:+18509615 | None:intergenic |
| CCTTCATACTCATACTTGTT+TGG | 0.309677 | 1.3:-18509825 | MS.gene95367:CDS |
| AGGCTCAGGAACATCATTAA+AGG | 0.317240 | 1.3:+18509635 | None:intergenic |
| TCAGGTTTGGCTCACTTGTT+TGG | 0.328846 | 1.3:-18509856 | MS.gene95367:CDS |
| ATTGTCACCTTCTGCTTGTT+TGG | 0.329434 | 1.3:-18508398 | MS.gene95367:CDS |
| CTTGTTGCTTCTTGTGCTCC+AGG | 0.336655 | 1.3:+18507968 | None:intergenic |
| GTCTTTGTGCGGGTACCGTT+TGG | 0.366595 | 1.3:+18508555 | None:intergenic |
| ACATCAGACAGAAACTAATT+TGG | 0.367590 | 1.3:-18507834 | MS.gene95367:CDS |
| ACTAATTTGGTCACCTTCAC+TGG | 0.396568 | 1.3:-18507821 | MS.gene95367:CDS |
| TATCAGGAAGCTTGTTCATA+TGG | 0.419940 | 1.3:-18508531 | MS.gene95367:CDS |
| TACAGTCTTCATGGATGGAT+TGG | 0.420550 | 1.3:-18508422 | MS.gene95367:CDS |
| TGCCATTGTAATGTCAGGTT+TGG | 0.435462 | 1.3:-18509869 | MS.gene95367:CDS |
| TGCTGCATTAACAGGGTTGA+TGG | 0.454100 | 1.3:-18507885 | MS.gene95367:CDS |
| TACCCGCACAAAGACATATC+AGG | 0.463004 | 1.3:-18508547 | MS.gene95367:CDS |
| GGCTCAGGAACATCATTAAA+GGG | 0.463466 | 1.3:+18509636 | None:intergenic |
| ATTGACTATGCTTCCGTGGA+TGG | 0.467721 | 1.3:-18509781 | MS.gene95367:CDS |
| GCGGAATATTTAGCATATCA+TGG | 0.474457 | 1.3:+18508450 | None:intergenic |
| ATGAGTGCCATTGTAATGTC+AGG | 0.479739 | 1.3:-18509874 | MS.gene95367:CDS |
| ATCTTTACAGTCTTCATGGA+TGG | 0.510201 | 1.3:-18508427 | MS.gene95367:CDS |
| CAAGAGCTAGAGTGCTTCCA+TGG | 0.524373 | 1.3:-18507949 | MS.gene95367:CDS |
| AGCTATTATGGCATTCCAAA+CGG | 0.526255 | 1.3:-18508570 | MS.gene95367:CDS |
| CTTCCTGATATGTCTTTGTG+CGG | 0.537316 | 1.3:+18508544 | None:intergenic |
| CAGCAAGGAAAATAAGGCTC+AGG | 0.541270 | 1.3:+18509621 | None:intergenic |
| GGCTGGTTTCTTGAAACTGA+GGG | 0.543574 | 1.3:-18507858 | MS.gene95367:CDS |
| CCAAACAAGTATGAGTATGA+AGG | 0.550105 | 1.3:+18509825 | None:intergenic |
| ACAGGGTTGATGGAGAAGGC+TGG | 0.560279 | 1.3:-18507875 | MS.gene95367:CDS |
| GTGCTTCCATGGCACAAAGT+TGG | 0.562421 | 1.3:-18507938 | MS.gene95367:CDS |
| TTACCACCAACTTTGTGCCA+TGG | 0.569979 | 1.3:+18507932 | None:intergenic |
| TTCCTGATATGTCTTTGTGC+GGG | 0.571362 | 1.3:+18508545 | None:intergenic |
| CTTCCATGGCACAAAGTTGG+TGG | 0.575822 | 1.3:-18507935 | MS.gene95367:CDS |
| TAGAATTGAAAGACCAGTGA+AGG | 0.581454 | 1.3:+18507808 | None:intergenic |
| TGCATATACCTTCACCAGCA+AGG | 0.583434 | 1.3:+18509606 | None:intergenic |
| ATTAACAGGGTTGATGGAGA+AGG | 0.597536 | 1.3:-18507879 | MS.gene95367:CDS |
| AGGCTGGTTTCTTGAAACTG+AGG | 0.602429 | 1.3:-18507859 | MS.gene95367:CDS |
| AGGGATTGACTATGCTTCCG+TGG | 0.627678 | 1.3:-18509785 | MS.gene95367:CDS |
| CTGCAAACCAAACAAGCAGA+AGG | 0.637468 | 1.3:+18508391 | None:intergenic |
| CCATGAAGACTGTAAAGATG+CGG | 0.657005 | 1.3:+18508431 | None:intergenic |
| AGCCAAACCTGACATTACAA+TGG | 0.673290 | 1.3:+18509867 | None:intergenic |
| CAATATGTGCTGCATTAACA+GGG | 0.682347 | 1.3:-18507892 | MS.gene95367:CDS |
| GAAGACGCGAAATCCATCCA+CGG | 0.694348 | 1.3:+18509768 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGAAAAACAATTTAATTAA+GGG | + | chr1.3:18508293-18508312 | None:intergenic | 10.0% |
| !!! | TCATATATAAATGTTTTTTT+AGG | - | chr1.3:18509288-18509307 | MS.gene95367:intron | 10.0% |
| !! | ATATATCTCAATTTATTCAT+TGG | - | chr1.3:18509025-18509044 | MS.gene95367:intron | 15.0% |
| !! | CTAGAAAAACAATTTAATTA+AGG | + | chr1.3:18508294-18508313 | None:intergenic | 15.0% |
| !! | TAAAATATTAGAGATGTTAT+GGG | + | chr1.3:18508830-18508849 | None:intergenic | 15.0% |
| !! | TTAAAATTTAACAGCTATTA+TGG | - | chr1.3:18509058-18509077 | MS.gene95367:intron | 15.0% |
| !!! | AAAAACAATCAAATAGTTTT+AGG | - | chr1.3:18509487-18509506 | MS.gene95367:intron | 15.0% |
| !!! | CGAATTTTAGAATTTAAATA+GGG | + | chr1.3:18509363-18509382 | None:intergenic | 15.0% |
| !!! | TCGAATTTTAGAATTTAAAT+AGG | + | chr1.3:18509364-18509383 | None:intergenic | 15.0% |
| !!! | TTTTTTAGGTAAAAATAGTT+TGG | - | chr1.3:18509302-18509321 | MS.gene95367:intron | 15.0% |
| !! | CTAAAATATTAGAGATGTTA+TGG | + | chr1.3:18508831-18508850 | None:intergenic | 20.0% |
| !! | CTTATACCTATTATTAAAGT+CGG | + | chr1.3:18509599-18509618 | None:intergenic | 20.0% |
| !! | TAAATTTCATTTGCATATAG+AGG | + | chr1.3:18508435-18508454 | None:intergenic | 20.0% |
| !! | TTTAACATACATGATCATAT+GGG | + | chr1.3:18508622-18508641 | None:intergenic | 20.0% |
| !!! | AAATAGTTTTAGGATATGTT+CGG | - | chr1.3:18509497-18509516 | MS.gene95367:intron | 20.0% |
| !!! | ATGATTTTGACCATAAAAAA+AGG | - | chr1.3:18508802-18508821 | MS.gene95367:intron | 20.0% |
| !!! | ATTTCAATGTGTTTTTTTTG+AGG | - | chr1.3:18509387-18509406 | MS.gene95367:intron | 20.0% |
| !!! | GTTTTTTTTGAGGTTTTATA+GGG | - | chr1.3:18509397-18509416 | MS.gene95367:intron | 20.0% |
| !!! | TGGTAAAGTACTATTTTTTA+TGG | - | chr1.3:18509725-18509744 | MS.gene95367:intron | 20.0% |
| !!! | TGTTTTTTTTGAGGTTTTAT+AGG | - | chr1.3:18509396-18509415 | MS.gene95367:intron | 20.0% |
| !!! | TTGTTTTCTAGAAAGAAAAA+GGG | + | chr1.3:18508243-18508262 | None:intergenic | 20.0% |
| ! | CTTTAACATACATGATCATA+TGG | + | chr1.3:18508623-18508642 | None:intergenic | 25.0% |
| ! | CTTTAATGTTTATTGTTTGC+AGG | - | chr1.3:18507977-18507996 | MS.gene95367:CDS | 25.0% |
| !! | AAAGTTGATCATCACAATTT+CGG | - | chr1.3:18508875-18508894 | MS.gene95367:intron | 25.0% |
| !! | ATATTGTTGATTAATTGCAG+TGG | - | chr1.3:18509622-18509641 | MS.gene95367:CDS | 25.0% |
| !! | CAAAATCATCTCCTTTTAAT+GGG | + | chr1.3:18508791-18508810 | None:intergenic | 25.0% |
| !! | TATTGTTGATTAATTGCAGT+GGG | - | chr1.3:18509623-18509642 | MS.gene95367:CDS | 25.0% |
| !! | TCAAAATCATCTCCTTTTAA+TGG | + | chr1.3:18508792-18508811 | None:intergenic | 25.0% |
| !! | TCTCAATTTATTCATTGGTT+TGG | - | chr1.3:18509030-18509049 | MS.gene95367:intron | 25.0% |
| !!! | AGAAAGTGTTACAAAAGAAT+AGG | - | chr1.3:18508641-18508660 | MS.gene95367:intron | 25.0% |
| !!! | CTCTTTGAAACATACTTTAA+TGG | + | chr1.3:18508128-18508147 | None:intergenic | 25.0% |
| !!! | GATATACCGACTTTAATAAT+AGG | - | chr1.3:18509590-18509609 | MS.gene95367:intron | 25.0% |
| !!! | GTTGTTTTCTAGAAAGAAAA+AGG | + | chr1.3:18508244-18508263 | None:intergenic | 25.0% |
| AAACATACACTTAGTTGTCA+TGG | - | chr1.3:18508968-18508987 | MS.gene95367:intron | 30.0% | |
| AACTAAATGTGCCCATTAAA+AGG | - | chr1.3:18508777-18508796 | MS.gene95367:intron | 30.0% | |
| ACATCAGACAGAAACTAATT+TGG | - | chr1.3:18509806-18509825 | MS.gene95367:CDS | 30.0% | |
| ATTCTAAATCCAAACTGCAT+AGG | - | chr1.3:18509436-18509455 | MS.gene95367:intron | 30.0% | |
| ATTCTCATTTAAACATGCAC+CGG | + | chr1.3:18508498-18508517 | None:intergenic | 30.0% | |
| GGTCTTTCAATTCTATTGTT+TGG | - | chr1.3:18509840-18509859 | MS.gene95367:CDS | 30.0% | |
| GGTTGTTTACAGAAAATTGA+AGG | - | chr1.3:18509518-18509537 | MS.gene95367:intron | 30.0% | |
| TACATAACATGTGACAACAA+AGG | + | chr1.3:18507927-18507946 | None:intergenic | 30.0% | |
| TAGATTAACGATGACTTTGA+AGG | + | chr1.3:18508949-18508968 | None:intergenic | 30.0% | |
| TTCTAAATCCAAACTGCATA+GGG | - | chr1.3:18509437-18509456 | MS.gene95367:intron | 30.0% | |
| TTTGTCCCATTTAAACTAAC+CGG | - | chr1.3:18508476-18508495 | MS.gene95367:CDS | 30.0% | |
| ! | GAAGTGTCTATTAAATTCAG+AGG | + | chr1.3:18508673-18508692 | None:intergenic | 30.0% |
| ! | TGAATCCATCTCTTTTCATA+TGG | + | chr1.3:18508695-18508714 | None:intergenic | 30.0% |
| ! | TTTCTAGAAAGAAAAAGGGA+GGG | + | chr1.3:18508239-18508258 | None:intergenic | 30.0% |
| !! | ACAGAAAATTGAAGGTGTTT+AGG | - | chr1.3:18509526-18509545 | MS.gene95367:intron | 30.0% |
| !! | CACTTGATTGCTATTGTTTT+TGG | - | chr1.3:18509137-18509156 | MS.gene95367:intron | 30.0% |
| !! | TTTTAATGGGCACATTTAGT+TGG | + | chr1.3:18508778-18508797 | None:intergenic | 30.0% |
| !! | TTTTCTAGAAAGAAAAAGGG+AGG | + | chr1.3:18508240-18508259 | None:intergenic | 30.0% |
| !!! | GTTATGGGTACCTTTTTTTA+TGG | + | chr1.3:18508815-18508834 | None:intergenic | 30.0% |
| AGCTATTATGGCATTCCAAA+CGG | - | chr1.3:18509070-18509089 | MS.gene95367:intron | 35.0% | |
| ATCTTTACAGTCTTCATGGA+TGG | - | chr1.3:18509213-18509232 | MS.gene95367:intron | 35.0% | |
| CAATATGTGCTGCATTAACA+GGG | - | chr1.3:18509748-18509767 | MS.gene95367:intron | 35.0% | |
| CACTTCCATATGAAAAGAGA+TGG | - | chr1.3:18508687-18508706 | MS.gene95367:intron | 35.0% | |
| CCAAACAAGTATGAGTATGA+AGG | + | chr1.3:18507818-18507837 | None:intergenic | 35.0% | |
| CCTTCATACTCATACTTGTT+TGG | - | chr1.3:18507815-18507834 | MS.gene95367:CDS | 35.0% | |
| GCGGAATATTTAGCATATCA+TGG | + | chr1.3:18509193-18509212 | None:intergenic | 35.0% | |
| TAGAATTGAAAGACCAGTGA+AGG | + | chr1.3:18509835-18509854 | None:intergenic | 35.0% | |
| ! | ACGATGACTTTGAAGGAAAT+AGG | + | chr1.3:18508942-18508961 | None:intergenic | 35.0% |
| ! | CGATGACTTTGAAGGAAATA+GGG | + | chr1.3:18508941-18508960 | None:intergenic | 35.0% |
| ! | TATAGGGTTTTCATGCAGTT+CGG | - | chr1.3:18509413-18509432 | MS.gene95367:intron | 35.0% |
| ! | TATCAGGAAGCTTGTTCATA+TGG | - | chr1.3:18509109-18509128 | MS.gene95367:intron | 35.0% |
| !! | ATGCACCGGTTAGTTTAAAT+GGG | + | chr1.3:18508484-18508503 | None:intergenic | 35.0% |
| !! | GATTAATTGCAGTGGGTTTT+TGG | - | chr1.3:18509630-18509649 | MS.gene95367:CDS | 35.0% |
| !!! | GCTATTGTTTTTGGCATAGT+TGG | - | chr1.3:18509146-18509165 | MS.gene95367:intron | 35.0% |
| !!! | TTTTGGCTTGGTTACATTCT+TGG | - | chr1.3:18509647-18509666 | MS.gene95367:intron | 35.0% |
| ACTAATTTGGTCACCTTCAC+TGG | - | chr1.3:18509819-18509838 | MS.gene95367:CDS | 40.0% | |
| AGCCAAACCTGACATTACAA+TGG | + | chr1.3:18507776-18507795 | None:intergenic | 40.0% | |
| AGGCTCAGGAACATCATTAA+AGG | + | chr1.3:18508008-18508027 | None:intergenic | 40.0% | |
| ATTGTCACCTTCTGCTTGTT+TGG | - | chr1.3:18509242-18509261 | MS.gene95367:intron | 40.0% | |
| CCATGAAGACTGTAAAGATG+CGG | + | chr1.3:18509212-18509231 | None:intergenic | 40.0% | |
| CTTCACCAGCAAGGAAAATA+AGG | + | chr1.3:18508028-18508047 | None:intergenic | 40.0% | |
| CTTCCTGATATGTCTTTGTG+CGG | + | chr1.3:18509099-18509118 | None:intergenic | 40.0% | |
| GCAATATGTGCTGCATTAAC+AGG | - | chr1.3:18509747-18509766 | MS.gene95367:intron | 40.0% | |
| GGCTCAGGAACATCATTAAA+GGG | + | chr1.3:18508007-18508026 | None:intergenic | 40.0% | |
| TACAGTCTTCATGGATGGAT+TGG | - | chr1.3:18509218-18509237 | MS.gene95367:intron | 40.0% | |
| TAGTAAGATATGACTCCGAG+AGG | + | chr1.3:18508071-18508090 | None:intergenic | 40.0% | |
| TGCCATTGTAATGTCAGGTT+TGG | - | chr1.3:18507771-18507790 | MS.gene95367:CDS | 40.0% | |
| TTCCTGATATGTCTTTGTGC+GGG | + | chr1.3:18509098-18509117 | None:intergenic | 40.0% | |
| TTGGTTACATTCTTGGTTCC+TGG | - | chr1.3:18509654-18509673 | MS.gene95367:intron | 40.0% | |
| ! | ATGAGTGCCATTGTAATGTC+AGG | - | chr1.3:18507766-18507785 | MS.gene95367:CDS | 40.0% |
| ! | GGTTGTTACATTTTCGCGAA+GGG | - | chr1.3:18507836-18507855 | MS.gene95367:CDS | 40.0% |
| ! | TGGTTGTTACATTTTCGCGA+AGG | - | chr1.3:18507835-18507854 | MS.gene95367:CDS | 40.0% |
| !! | ATTAACAGGGTTGATGGAGA+AGG | - | chr1.3:18509761-18509780 | MS.gene95367:intron | 40.0% |
| !! | CATGCACCGGTTAGTTTAAA+TGG | + | chr1.3:18508485-18508504 | None:intergenic | 40.0% |
| !! | CTTATTTTCCTTGCTGGTGA+AGG | - | chr1.3:18508026-18508045 | MS.gene95367:intron | 40.0% |
| ATTGACTATGCTTCCGTGGA+TGG | - | chr1.3:18507859-18507878 | MS.gene95367:CDS | 45.0% | |
| CAGCAAGGAAAATAAGGCTC+AGG | + | chr1.3:18508022-18508041 | None:intergenic | 45.0% | |
| CCGCATCTTTACAGTCTTCA+TGG | - | chr1.3:18509209-18509228 | MS.gene95367:intron | 45.0% | |
| CTGCAAACCAAACAAGCAGA+AGG | + | chr1.3:18509252-18509271 | None:intergenic | 45.0% | |
| TAAGATATGACTCCGAGAGG+AGG | + | chr1.3:18508068-18508087 | None:intergenic | 45.0% | |
| TACCCGCACAAAGACATATC+AGG | - | chr1.3:18509093-18509112 | MS.gene95367:intron | 45.0% | |
| TGCATATACCTTCACCAGCA+AGG | + | chr1.3:18508037-18508056 | None:intergenic | 45.0% | |
| TGCTGCATTAACAGGGTTGA+TGG | - | chr1.3:18509755-18509774 | MS.gene95367:intron | 45.0% | |
| TTACCACCAACTTTGTGCCA+TGG | + | chr1.3:18509711-18509730 | None:intergenic | 45.0% | |
| ! | TCAGGTTTGGCTCACTTGTT+TGG | - | chr1.3:18507784-18507803 | MS.gene95367:CDS | 45.0% |
| !! | AGGCTGGTTTCTTGAAACTG+AGG | - | chr1.3:18509781-18509800 | MS.gene95367:CDS | 45.0% |
| !! | CTTCTGCTTGTTTGGTTTGC+AGG | - | chr1.3:18509250-18509269 | MS.gene95367:intron | 45.0% |
| !! | GGCTGGTTTCTTGAAACTGA+GGG | - | chr1.3:18509782-18509801 | MS.gene95367:CDS | 45.0% |
| !!! | ATTGCAGTGGGTTTTTGGCT+TGG | - | chr1.3:18509635-18509654 | MS.gene95367:CDS | 45.0% |
| !!! | CTGAGCCTTATTTTCCTTGC+TGG | - | chr1.3:18508020-18508039 | MS.gene95367:intron | 45.0% |
| AGGGATTGACTATGCTTCCG+TGG | - | chr1.3:18507855-18507874 | MS.gene95367:CDS | 50.0% | |
| AGGGCACGCGAGAAACTTAT+AGG | + | chr1.3:18509344-18509363 | None:intergenic | 50.0% | |
| CTTCCATGGCACAAAGTTGG+TGG | - | chr1.3:18509705-18509724 | MS.gene95367:intron | 50.0% | |
| GAAGACGCGAAATCCATCCA+CGG | + | chr1.3:18507875-18507894 | None:intergenic | 50.0% | |
| GCGTGAGAAGCTCATATGGT+AGG | - | chr1.3:18509461-18509480 | MS.gene95367:intron | 50.0% | |
| GGGCACGCGAGAAACTTATA+GGG | + | chr1.3:18509343-18509362 | None:intergenic | 50.0% | |
| GTGCTTCCATGGCACAAAGT+TGG | - | chr1.3:18509702-18509721 | MS.gene95367:intron | 50.0% | |
| ! | CAAGAGCTAGAGTGCTTCCA+TGG | - | chr1.3:18509691-18509710 | MS.gene95367:intron | 50.0% |
| ! | CTTGTTGCTTCTTGTGCTCC+AGG | + | chr1.3:18509675-18509694 | None:intergenic | 50.0% |
| TGCACTGCACTTCCTCCTCT+CGG | - | chr1.3:18508053-18508072 | MS.gene95367:intron | 55.0% | |
| ! | GTCTTTGTGCGGGTACCGTT+TGG | + | chr1.3:18509088-18509107 | None:intergenic | 55.0% |
| !! | ACAGGGTTGATGGAGAAGGC+TGG | - | chr1.3:18509765-18509784 | MS.gene95367:CDS | 55.0% |
| CTCACGCGCCCTATGCAGTT+TGG | + | chr1.3:18509448-18509467 | None:intergenic | 60.0% | |
| GGGCGCGTGAGAAGCTCATA+TGG | - | chr1.3:18509457-18509476 | MS.gene95367:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 18507766 | 18509896 | 18507766 | ID=MS.gene95367 |
| chr1.3 | mRNA | 18507766 | 18509896 | 18507766 | ID=MS.gene95367.t1;Parent=MS.gene95367 |
| chr1.3 | exon | 18509765 | 18509896 | 18509765 | ID=MS.gene95367.t1.exon1;Parent=MS.gene95367.t1 |
| chr1.3 | CDS | 18509765 | 18509896 | 18509765 | ID=cds.MS.gene95367.t1;Parent=MS.gene95367.t1 |
| chr1.3 | exon | 18509615 | 18509663 | 18509615 | ID=MS.gene95367.t1.exon2;Parent=MS.gene95367.t1 |
| chr1.3 | CDS | 18509615 | 18509663 | 18509615 | ID=cds.MS.gene95367.t1;Parent=MS.gene95367.t1 |
| chr1.3 | exon | 18508391 | 18508590 | 18508391 | ID=MS.gene95367.t1.exon3;Parent=MS.gene95367.t1 |
| chr1.3 | CDS | 18508391 | 18508590 | 18508391 | ID=cds.MS.gene95367.t1;Parent=MS.gene95367.t1 |
| chr1.3 | exon | 18507766 | 18508020 | 18507766 | ID=MS.gene95367.t1.exon4;Parent=MS.gene95367.t1 |
| chr1.3 | CDS | 18507766 | 18508020 | 18507766 | ID=cds.MS.gene95367.t1;Parent=MS.gene95367.t1 |
| Gene Sequence |
| Protein sequence |
