Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95441.t1 | AAT45084.1 | 99.2 | 491 | 4 | 0 | 1 | 491 | 1 | 491 | 3.70E-278 | 966.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95441.t1 | P92983 | 55.7 | 499 | 211 | 6 | 1 | 490 | 1 | 498 | 7.3e-150 | 531.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95441.t1 | Q6JA03 | 99.2 | 491 | 4 | 0 | 1 | 491 | 1 | 491 | 2.7e-278 | 966.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene72354 | MS.gene95441 | PPI |
| MS.gene011574 | MS.gene95441 | PPI |
| MS.gene004578 | MS.gene95441 | PPI |
| MS.gene041559 | MS.gene95441 | PPI |
| MS.gene52423 | MS.gene95441 | PPI |
| MS.gene95441 | MS.gene71995 | PPI |
| MS.gene073368 | MS.gene95441 | PPI |
| MS.gene61281 | MS.gene95441 | PPI |
| MS.gene95441 | MS.gene036485 | PPI |
| MS.gene95441 | MS.gene035333 | PPI |
| MS.gene00318 | MS.gene95441 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95441.t1 | MTR_7g020820 | 95.927 | 491 | 20 | 0 | 1 | 491 | 1 | 491 | 0.0 | 987 |
| MS.gene95441.t1 | MTR_6g016635 | 72.709 | 491 | 132 | 2 | 1 | 491 | 1 | 489 | 0.0 | 755 |
| MS.gene95441.t1 | MTR_6g016640 | 72.301 | 491 | 134 | 2 | 1 | 491 | 1 | 489 | 0.0 | 754 |
| MS.gene95441.t1 | MTR_6g016650 | 72.301 | 491 | 134 | 2 | 1 | 491 | 1 | 489 | 0.0 | 753 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95441.t1 | AT5G38710 | 55.193 | 491 | 201 | 8 | 1 | 488 | 1 | 475 | 0.0 | 548 |
| MS.gene95441.t1 | AT5G38710 | 54.772 | 482 | 199 | 8 | 1 | 479 | 1 | 466 | 0.0 | 536 |
| MS.gene95441.t1 | AT3G30775 | 55.711 | 499 | 211 | 6 | 1 | 490 | 1 | 498 | 0.0 | 526 |
| MS.gene95441.t1 | AT3G30775 | 55.711 | 499 | 211 | 6 | 1 | 490 | 1 | 498 | 0.0 | 526 |
Find 130 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTCTTCTTCTGCAGTTAA+TGG | 0.184815 | 7.4:+80763316 | None:intergenic |
| GCAAGCCAATATTCCATTAT+TGG | 0.192056 | 7.4:-80763242 | MS.gene95441:CDS |
| TCCAATTCATAACACTATTA+AGG | 0.221251 | 7.4:-80762969 | MS.gene95441:CDS |
| ATCAAAGGCTGCTGAGAAAA+TGG | 0.229693 | 7.4:-80763074 | MS.gene95441:CDS |
| AAGAAAATTGGCTGCTGATT+TGG | 0.237034 | 7.4:-80763002 | MS.gene95441:CDS |
| GCTGCAAAAGCACATGAATT+AGG | 0.242107 | 7.4:-80762746 | MS.gene95441:CDS |
| CGGAGTTTCCTTAGAATTCT+TGG | 0.272400 | 7.4:+80764585 | None:intergenic |
| ATGGAATTTGCACAACTATA+TGG | 0.300041 | 7.4:-80762701 | MS.gene95441:CDS |
| ATCAACCAATAATGGAATAT+TGG | 0.323034 | 7.4:+80763237 | None:intergenic |
| GGCAGTTGATTTGAGAAGTT+TGG | 0.328394 | 7.4:+80764392 | None:intergenic |
| CGACGCCGAGCTCAACTTCC+AGG | 0.345795 | 7.4:-80764448 | MS.gene95441:CDS |
| AGAAAATTGGCTGCTGATTT+GGG | 0.348106 | 7.4:-80763001 | MS.gene95441:CDS |
| GGACTTGACTCAGAGAAAAT+TGG | 0.349772 | 7.4:+80763367 | None:intergenic |
| TCCTTTGGTTTGAGCAATGC+AGG | 0.358077 | 7.4:-80762662 | MS.gene95441:CDS |
| GTTGTGCAAATTCCATCTTA+TGG | 0.359595 | 7.4:+80762708 | None:intergenic |
| TGTTCAGCATCAACCAATAA+TGG | 0.365065 | 7.4:+80763229 | None:intergenic |
| TATGTCTAGTGAAAGAAAAT+TGG | 0.367109 | 7.4:-80763014 | MS.gene95441:CDS |
| ATGGGATTTAAGTTGGTTAG+AGG | 0.368900 | 7.4:-80763043 | MS.gene95441:CDS |
| GGTGAAAACCCTATTGTGTT+TGG | 0.368909 | 7.4:-80763145 | MS.gene95441:CDS |
| TCCTTAATAGTGTTATGAAT+TGG | 0.371148 | 7.4:+80762968 | None:intergenic |
| TGAATGGTTCCAAACACAAT+AGG | 0.377372 | 7.4:+80763136 | None:intergenic |
| ATGTCTGAGGCTCTATCCTT+TGG | 0.383483 | 7.4:-80762677 | MS.gene95441:CDS |
| AATGTTACGTAAAGGATTAT+TGG | 0.386279 | 7.4:+80764296 | None:intergenic |
| AACCAGCATTCCACGTAAAC+CGG | 0.387024 | 7.4:+80764179 | None:intergenic |
| ATTCTTTCAAGCAAACTCAT+TGG | 0.393905 | 7.4:+80763457 | None:intergenic |
| CGAGGTGAGGGCGGGTTGGA+AGG | 0.397110 | 7.4:+80764542 | None:intergenic |
| TAATCCCACCAAGAATTCTA+AGG | 0.403070 | 7.4:-80764593 | MS.gene95441:CDS |
| TCTGCTATTATGCATAATAA+AGG | 0.408933 | 7.4:-80763166 | MS.gene95441:CDS |
| CTGCAAAAGCACATGAATTA+GGG | 0.409429 | 7.4:-80762745 | MS.gene95441:CDS |
| TCTTCTGCAGTTAATGGCTC+TGG | 0.411211 | 7.4:+80763322 | None:intergenic |
| GCTCTGGTCTCTTCCTTGTA+TGG | 0.417428 | 7.4:+80763338 | None:intergenic |
| TTACGTGGAATGCTGGTTTA+CGG | 0.420959 | 7.4:-80764174 | MS.gene95441:CDS |
| GCAACTCATAACATTGAATC+AGG | 0.421031 | 7.4:-80762869 | MS.gene95441:intron |
| GTTAGCAAGTATATGCCATT+TGG | 0.425364 | 7.4:-80762632 | MS.gene95441:CDS |
| ATTTGAGAAGTTTGGTGGTT+GGG | 0.430666 | 7.4:+80764400 | None:intergenic |
| TCAAAGGCTGCTGAGAAAAT+GGG | 0.431171 | 7.4:-80763073 | MS.gene95441:CDS |
| AGAGGAGTGTTGGCTGCATC+AGG | 0.432114 | 7.4:-80762560 | MS.gene95441:CDS |
| GAATGGTTCCAAACACAATA+GGG | 0.432754 | 7.4:+80763137 | None:intergenic |
| TTCCATGGTAAAACAAAAGA+AGG | 0.432804 | 7.4:+80763403 | None:intergenic |
| GATACCAATGGGATTTAAGT+TGG | 0.434398 | 7.4:-80763050 | MS.gene95441:CDS |
| AGCGAGAGCGGGCGAGGTGA+GGG | 0.443290 | 7.4:+80764530 | None:intergenic |
| ATGCTTGAGAAGATTGCTAA+TGG | 0.443947 | 7.4:-80762911 | MS.gene95441:CDS |
| GAGGTGAGGGCGGGTTGGAA+GGG | 0.450540 | 7.4:+80764543 | None:intergenic |
| GCTCGGCGTCGGGAGGGAGG+AGG | 0.454095 | 7.4:+80764460 | None:intergenic |
| TGGAAGTTGAGCTCGGCGTC+GGG | 0.458380 | 7.4:+80764450 | None:intergenic |
| GGAGAAGATGCTACCACTGC+TGG | 0.458795 | 7.4:-80764228 | MS.gene95441:CDS |
| GGCAATGAATCTTGCTTCCA+TGG | 0.463585 | 7.4:+80763388 | None:intergenic |
| CGGGCGAGGTGAGGGCGGGT+TGG | 0.468628 | 7.4:+80764538 | None:intergenic |
| GAGAATGTTGTTGGCATCAA+AGG | 0.469497 | 7.4:-80763089 | MS.gene95441:CDS |
| TGGTCTAAAATATTAGATGT+AGG | 0.469789 | 7.4:+80764507 | None:intergenic |
| GTAACAGGAAGGAGTTGGTC+AGG | 0.476336 | 7.4:-80762413 | MS.gene95441:intron |
| AGGAGGGTTGTTGTCGATGA+TGG | 0.476808 | 7.4:+80764477 | None:intergenic |
| AGCCGGTTTACGTGGAATGC+TGG | 0.481169 | 7.4:-80764181 | MS.gene95441:CDS |
| TGCTAAGGAGAGAATGTTGT+TGG | 0.483046 | 7.4:-80763098 | MS.gene95441:CDS |
| GACTTATTTGAAAGATGCTA+AGG | 0.483282 | 7.4:-80763113 | MS.gene95441:CDS |
| TGTAGGAGCGAGAGCGGGCG+AGG | 0.484035 | 7.4:+80764524 | None:intergenic |
| GAGAAAATGGGGATACCAAT+GGG | 0.487127 | 7.4:-80763061 | MS.gene95441:CDS |
| TGGCTGCATCAGGCTTTGAC+AGG | 0.489064 | 7.4:-80762550 | MS.gene95441:CDS |
| ATCTTTCAAATAAGTCTGAA+TGG | 0.490946 | 7.4:+80763120 | None:intergenic |
| CAAGTCCTTTGTACCATACA+AGG | 0.491199 | 7.4:-80763351 | MS.gene95441:CDS |
| AATTCTTGGTGGGATTACTC+TGG | 0.492199 | 7.4:+80764599 | None:intergenic |
| CTCGGCGTCGGGAGGGAGGA+GGG | 0.497150 | 7.4:+80764461 | None:intergenic |
| CTGGAAGTTGAGCTCGGCGT+CGG | 0.500549 | 7.4:+80764449 | None:intergenic |
| AAAGAAGAGATTACCGAAGA+TGG | 0.501243 | 7.4:+80764066 | None:intergenic |
| CAGATCGCTTCCTCCATCTT+CGG | 0.508348 | 7.4:-80764079 | MS.gene95441:intron |
| AAAGCACATGAATTAGGGAT+TGG | 0.508788 | 7.4:-80762740 | MS.gene95441:CDS |
| AGAAGGGCTGAGGAGAATAG+AGG | 0.509588 | 7.4:-80762578 | MS.gene95441:CDS |
| ACAGTCTCCACAGGACCAAA+TGG | 0.512639 | 7.4:+80762617 | None:intergenic |
| TCCTTTACGTAACATTGCTA+TGG | 0.513932 | 7.4:-80764289 | MS.gene95441:CDS |
| TGCTACCGCGGTCGAGCCAA+TGG | 0.518289 | 7.4:-80764361 | MS.gene95441:CDS |
| TGGAAAGGTGAACCATAAGA+TGG | 0.519633 | 7.4:-80762720 | MS.gene95441:CDS |
| CAATGGTCGACCTTGGTACA+TGG | 0.523076 | 7.4:-80764344 | MS.gene95441:CDS |
| AGTTGAGCTCGGCGTCGGGA+GGG | 0.523522 | 7.4:+80764454 | None:intergenic |
| GACGTCCTGGAAGTTGAGCT+CGG | 0.525511 | 7.4:+80764443 | None:intergenic |
| GAGAAGATTGCTAATGGTCC+TGG | 0.526190 | 7.4:-80762905 | MS.gene95441:CDS |
| AGAGCGGGCGAGGTGAGGGC+GGG | 0.530587 | 7.4:+80764534 | None:intergenic |
| TTGAATGAAGCCGGTTTACG+TGG | 0.536980 | 7.4:-80764189 | MS.gene95441:CDS |
| TATGTAAAGTAATCAATAGC+AGG | 0.537525 | 7.4:+80763193 | None:intergenic |
| AAGTTGAGCTCGGCGTCGGG+AGG | 0.542028 | 7.4:+80764453 | None:intergenic |
| TCTTGGTGGGATTACTCTGG+TGG | 0.544261 | 7.4:+80764602 | None:intergenic |
| TGAGCTCGGCGTCGGGAGGG+AGG | 0.546223 | 7.4:+80764457 | None:intergenic |
| TGAGGAGAATAGAGGAGTGT+TGG | 0.546299 | 7.4:-80762570 | MS.gene95441:CDS |
| TTGGCTCGACCGCGGTAGCA+TGG | 0.546822 | 7.4:+80764364 | None:intergenic |
| AGTTGATTTGAGAAGTTTGG+TGG | 0.547853 | 7.4:+80764395 | None:intergenic |
| GAGCGAGAGCGGGCGAGGTG+AGG | 0.548525 | 7.4:+80764529 | None:intergenic |
| CCTTTGGTTTGAGCAATGCA+GGG | 0.548586 | 7.4:-80762661 | MS.gene95441:CDS |
| AGCAGTGGTAGCATCTTCTC+CGG | 0.551973 | 7.4:+80764230 | None:intergenic |
| GAGAGCGGGCGAGGTGAGGG+CGG | 0.552198 | 7.4:+80764533 | None:intergenic |
| CTCTTCCTTGTATGGTACAA+AGG | 0.552313 | 7.4:+80763346 | None:intergenic |
| TCAGCCCTTCTCAAGAGGTA+TGG | 0.555676 | 7.4:+80762590 | None:intergenic |
| CTAACCAACTTAAATCCCAT+TGG | 0.556156 | 7.4:+80763046 | None:intergenic |
| GGCTGTGATCGCAATCTCAA+AGG | 0.556621 | 7.4:-80764126 | MS.gene95441:CDS |
| GCCATAGCAATGTTACGTAA+AGG | 0.557815 | 7.4:+80764288 | None:intergenic |
| TTAGATGTAGGAGCGAGAGC+GGG | 0.558178 | 7.4:+80764519 | None:intergenic |
| GAATGAGTGATTTGCTGAGA+TGG | 0.558930 | 7.4:-80763438 | MS.gene95441:CDS |
| GTCGAGCCAATGGTCGACCT+TGG | 0.559131 | 7.4:-80764351 | MS.gene95441:CDS |
| CATGTACCAAGGTCGACCAT+TGG | 0.559276 | 7.4:+80764345 | None:intergenic |
| TGAGAAAATGGGGATACCAA+TGG | 0.562625 | 7.4:-80763062 | MS.gene95441:CDS |
| ATACCTCTTGAGAAGGGCTG+AGG | 0.568530 | 7.4:-80762588 | MS.gene95441:CDS |
| ATTGCCGGGTTGAATGAAGC+CGG | 0.569365 | 7.4:-80764198 | MS.gene95441:CDS |
| ACCTTGGTACATGGATGTTG+AGG | 0.575805 | 7.4:-80764335 | MS.gene95441:CDS |
| TTATGCCATACCTCTTGAGA+AGG | 0.578455 | 7.4:-80762595 | MS.gene95441:CDS |
| ATTAGATGTAGGAGCGAGAG+CGG | 0.579230 | 7.4:+80764518 | None:intergenic |
| CCCTGCATTGCTCAAACCAA+AGG | 0.579950 | 7.4:+80762661 | None:intergenic |
| TGTTTGTAACAGGAAGGAGT+TGG | 0.581168 | 7.4:-80762418 | MS.gene95441:intron |
| GTTTCCTTAGAATTCTTGGT+GGG | 0.589566 | 7.4:+80764589 | None:intergenic |
| TCTCCTCAGCCCTTCTCAAG+AGG | 0.589935 | 7.4:+80762585 | None:intergenic |
| GTATATGCCATTTGGTCCTG+TGG | 0.591190 | 7.4:-80762624 | MS.gene95441:CDS |
| GATTTGAGAAGTTTGGTGGT+TGG | 0.596318 | 7.4:+80764399 | None:intergenic |
| CACATTTCTGACAAAGCTCA+AGG | 0.598840 | 7.4:+80763266 | None:intergenic |
| CAAAGGCTGCTGAGAAAATG+GGG | 0.601355 | 7.4:-80763072 | MS.gene95441:CDS |
| AGGGTTGTTGTCGATGATGG+CGG | 0.601939 | 7.4:+80764480 | None:intergenic |
| GACCGCGGTAGCATGGAGGA+TGG | 0.611857 | 7.4:+80764371 | None:intergenic |
| TGCCATCCTCCATGCTACCG+CGG | 0.616863 | 7.4:-80764373 | MS.gene95441:CDS |
| AGTTTCCTTAGAATTCTTGG+TGG | 0.617238 | 7.4:+80764588 | None:intergenic |
| AAGCGATCTGCTGACATCAA+CGG | 0.628709 | 7.4:+80764092 | None:intergenic |
| GTCGACCATTGGCTCGACCG+CGG | 0.630982 | 7.4:+80764356 | None:intergenic |
| GAAGAGATTACCGAAGATGG+AGG | 0.632295 | 7.4:+80764069 | None:intergenic |
| GCTTTGACAGGCAACTGATG+AGG | 0.640989 | 7.4:-80762538 | MS.gene95441:intron |
| TCCATGGTAAAACAAAAGAA+GGG | 0.643486 | 7.4:+80763404 | None:intergenic |
| TATGCCATACCTCTTGAGAA+GGG | 0.652837 | 7.4:-80762594 | MS.gene95441:CDS |
| TATGGCATAACAGTCTCCAC+AGG | 0.658251 | 7.4:+80762608 | None:intergenic |
| ACATGAATTAGGGATTGGAA+AGG | 0.662252 | 7.4:-80762735 | MS.gene95441:CDS |
| GAAGATGCTCATGATAACGC+TGG | 0.669461 | 7.4:-80764147 | MS.gene95441:CDS |
| AAGATTGCTAATGGTCCTGG+TGG | 0.669644 | 7.4:-80762902 | MS.gene95441:CDS |
| GTTGCAAGAACAACTCCACC+AGG | 0.681012 | 7.4:+80762887 | None:intergenic |
| ACCTCAACATCCATGTACCA+AGG | 0.686030 | 7.4:+80764334 | None:intergenic |
| ACAACTATATGGAATGTCTG+AGG | 0.687877 | 7.4:-80762690 | MS.gene95441:CDS |
| GCTCGACCGCGGTAGCATGG+AGG | 0.710481 | 7.4:+80764367 | None:intergenic |
| TAAACCGGCTTCATTCAACC+CGG | 0.724383 | 7.4:+80764194 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATGATATTATGATTTATA+AGG | - | chr7.4:80764157-80764176 | MS.gene95441:CDS | 10.0% |
| !!! | TTATTAATATTGTTTTGTAT+AGG | - | chr7.4:80764216-80764235 | MS.gene95441:CDS | 10.0% |
| !! | AAATTAATGTATGTAATTGA+GGG | - | chr7.4:80764180-80764199 | MS.gene95441:CDS | 15.0% |
| !! | AAAAATAGGTTATGAATTTG+AGG | - | chr7.4:80763396-80763415 | MS.gene95441:CDS | 20.0% |
| !! | AAAATAGGTTATGAATTTGA+GGG | - | chr7.4:80763397-80763416 | MS.gene95441:CDS | 20.0% |
| !! | AATTAATGTATGTAATTGAG+GGG | - | chr7.4:80764181-80764200 | MS.gene95441:CDS | 20.0% |
| !! | ACACAGAAAAAAGTTTAATT+TGG | + | chr7.4:80763478-80763497 | None:intergenic | 20.0% |
| !! | GAAATTAATGTATGTAATTG+AGG | - | chr7.4:80764179-80764198 | MS.gene95441:CDS | 20.0% |
| !! | TAACAAGAGTAAAAATGAAA+TGG | + | chr7.4:80764507-80764526 | None:intergenic | 20.0% |
| !! | TTAATTGTTTACGTAACATT+TGG | - | chr7.4:80764524-80764543 | MS.gene95441:CDS | 20.0% |
| !!! | AACAAACAAACAATTGTTTT+TGG | - | chr7.4:80763284-80763303 | MS.gene95441:CDS | 20.0% |
| !!! | ATTGTTTTGTATAGGAAAAT+TGG | - | chr7.4:80764224-80764243 | MS.gene95441:CDS | 20.0% |
| !!! | GTTTTCTTTTTTTGCTTTTT+TGG | - | chr7.4:80762981-80763000 | MS.gene95441:CDS | 20.0% |
| !!! | TTAAACTTTTTTCTGTGTAT+AGG | - | chr7.4:80763480-80763499 | MS.gene95441:CDS | 20.0% |
| ! | AAATAGGTTATGAATTTGAG+GGG | - | chr7.4:80763398-80763417 | MS.gene95441:CDS | 25.0% |
| ! | AATGAAAAGAAAACTAAGCA+TGG | - | chr7.4:80763186-80763205 | MS.gene95441:CDS | 25.0% |
| ! | AATGTTACGTAAAGGATTAT+TGG | + | chr7.4:80762702-80762721 | None:intergenic | 25.0% |
| ! | ACAAAAATGATCGAAAAAAG+TGG | + | chr7.4:80762744-80762763 | None:intergenic | 25.0% |
| ! | ATCTTTCAAATAAGTCTGAA+TGG | + | chr7.4:80763878-80763897 | None:intergenic | 25.0% |
| ! | TATGTAAAGTAATCAATAGC+AGG | + | chr7.4:80763805-80763824 | None:intergenic | 25.0% |
| ! | TATGTCTAGTGAAAGAAAAT+TGG | - | chr7.4:80763981-80764000 | MS.gene95441:intron | 25.0% |
| ! | TCCAATTCATAACACTATTA+AGG | - | chr7.4:80764026-80764045 | MS.gene95441:intron | 25.0% |
| ! | TCCTTAATAGTGTTATGAAT+TGG | + | chr7.4:80764030-80764049 | None:intergenic | 25.0% |
| ! | TCTGCTATTATGCATAATAA+AGG | - | chr7.4:80763829-80763848 | MS.gene95441:intron | 25.0% |
| !! | ATCAACCAATAATGGAATAT+TGG | + | chr7.4:80763761-80763780 | None:intergenic | 25.0% |
| !! | TGGTCTAAAATATTAGATGT+AGG | + | chr7.4:80762491-80762510 | None:intergenic | 25.0% |
| !!! | CTTTTTTTGCTTTTTTGGTT+CGG | - | chr7.4:80762986-80763005 | MS.gene95441:CDS | 25.0% |
| !!! | GATTTTGTTTTGTTTGTAAC+AGG | - | chr7.4:80764567-80764586 | MS.gene95441:CDS | 25.0% |
| AAATCAATCAAAGCATGGAT+TGG | - | chr7.4:80763236-80763255 | MS.gene95441:CDS | 30.0% | |
| ATGGAATTTGCACAACTATA+TGG | - | chr7.4:80764294-80764313 | MS.gene95441:CDS | 30.0% | |
| ATTCTTTCAAGCAAACTCAT+TGG | + | chr7.4:80763541-80763560 | None:intergenic | 30.0% | |
| CGGTTATTCTCAATTGAATT+TGG | + | chr7.4:80763057-80763076 | None:intergenic | 30.0% | |
| GACTTATTTGAAAGATGCTA+AGG | - | chr7.4:80763882-80763901 | MS.gene95441:intron | 30.0% | |
| TCATGAAATCAATCAAAGCA+TGG | - | chr7.4:80763231-80763250 | MS.gene95441:CDS | 30.0% | |
| TCCATGGTAAAACAAAAGAA+GGG | + | chr7.4:80763594-80763613 | None:intergenic | 30.0% | |
| TTCCATGGTAAAACAAAAGA+AGG | + | chr7.4:80763595-80763614 | None:intergenic | 30.0% | |
| ! | ATTGAGAATAACCGTTTTCA+TGG | - | chr7.4:80763063-80763082 | MS.gene95441:CDS | 30.0% |
| ! | TAGTTTTCTTTTCATTCCTC+AGG | + | chr7.4:80763182-80763201 | None:intergenic | 30.0% |
| !! | TTTTTCGATCATTTTTGTGC+CGG | - | chr7.4:80762746-80762765 | MS.gene95441:CDS | 30.0% |
| !!! | TTGTTTTGTTTGTAACAGGA+AGG | - | chr7.4:80764571-80764590 | MS.gene95441:CDS | 30.0% |
| AAAGAAGAGATTACCGAAGA+TGG | + | chr7.4:80762932-80762951 | None:intergenic | 35.0% | |
| AAAGCACATGAATTAGGGAT+TGG | - | chr7.4:80764255-80764274 | MS.gene95441:CDS | 35.0% | |
| AACCGCAATTTAATAGACGT+TGG | - | chr7.4:80763111-80763130 | MS.gene95441:CDS | 35.0% | |
| ACAACTATATGGAATGTCTG+AGG | - | chr7.4:80764305-80764324 | MS.gene95441:CDS | 35.0% | |
| ACATGAATTAGGGATTGGAA+AGG | - | chr7.4:80764260-80764279 | MS.gene95441:CDS | 35.0% | |
| AGAGATGCAATCTGCTTTAA+TGG | - | chr7.4:80763029-80763048 | MS.gene95441:CDS | 35.0% | |
| AGTTTCCTTAGAATTCTTGG+TGG | + | chr7.4:80762410-80762429 | None:intergenic | 35.0% | |
| ATGCTTGAGAAGATTGCTAA+TGG | - | chr7.4:80764084-80764103 | MS.gene95441:CDS | 35.0% | |
| CAATGGAAATGGAATGGAAT+TGG | - | chr7.4:80763261-80763280 | MS.gene95441:CDS | 35.0% | |
| CACCAACGTCTATTAAATTG+CGG | + | chr7.4:80763116-80763135 | None:intergenic | 35.0% | |
| CAGAAAAAAACTGTGGTTGA+TGG | - | chr7.4:80763337-80763356 | MS.gene95441:CDS | 35.0% | |
| CTAACCAACTTAAATCCCAT+TGG | + | chr7.4:80763952-80763971 | None:intergenic | 35.0% | |
| GAAAACTAAGCATGGAACAA+TGG | - | chr7.4:80763194-80763213 | MS.gene95441:CDS | 35.0% | |
| GAATGGTTCCAAACACAATA+GGG | + | chr7.4:80763861-80763880 | None:intergenic | 35.0% | |
| GATACCAATGGGATTTAAGT+TGG | - | chr7.4:80763945-80763964 | MS.gene95441:intron | 35.0% | |
| GCAACTCATAACATTGAATC+AGG | - | chr7.4:80764126-80764145 | MS.gene95441:CDS | 35.0% | |
| GCAAGCCAATATTCCATTAT+TGG | - | chr7.4:80763753-80763772 | MS.gene95441:intron | 35.0% | |
| GTTAGCAAGTATATGCCATT+TGG | - | chr7.4:80764363-80764382 | MS.gene95441:CDS | 35.0% | |
| GTTGTGCAAATTCCATCTTA+TGG | + | chr7.4:80764290-80764309 | None:intergenic | 35.0% | |
| GTTTCCTTAGAATTCTTGGT+GGG | + | chr7.4:80762409-80762428 | None:intergenic | 35.0% | |
| TAAGCATGGAACAATGGAAT+TGG | - | chr7.4:80763200-80763219 | MS.gene95441:CDS | 35.0% | |
| TAATCCCACCAAGAATTCTA+AGG | - | chr7.4:80762402-80762421 | MS.gene95441:CDS | 35.0% | |
| TCCTTTACGTAACATTGCTA+TGG | - | chr7.4:80762706-80762725 | MS.gene95441:CDS | 35.0% | |
| TGAATGGTTCCAAACACAAT+AGG | + | chr7.4:80763862-80763881 | None:intergenic | 35.0% | |
| TGTTCAGCATCAACCAATAA+TGG | + | chr7.4:80763769-80763788 | None:intergenic | 35.0% | |
| TTGGAACAATGGAAATGGAA+TGG | - | chr7.4:80763255-80763274 | MS.gene95441:CDS | 35.0% | |
| ! | AAGAAAATTGGCTGCTGATT+TGG | - | chr7.4:80763993-80764012 | MS.gene95441:intron | 35.0% |
| ! | ATTTGAGAAGTTTGGTGGTT+GGG | + | chr7.4:80762598-80762617 | None:intergenic | 35.0% |
| ! | CTGCAAAAGCACATGAATTA+GGG | - | chr7.4:80764250-80764269 | MS.gene95441:CDS | 35.0% |
| !! | AGAAAATTGGCTGCTGATTT+GGG | - | chr7.4:80763994-80764013 | MS.gene95441:intron | 35.0% |
| !! | AGTTGATTTGAGAAGTTTGG+TGG | + | chr7.4:80762603-80762622 | None:intergenic | 35.0% |
| !! | ATGGATTGGAACAATGGAAA+TGG | - | chr7.4:80763250-80763269 | MS.gene95441:CDS | 35.0% |
| !! | ATGGGATTTAAGTTGGTTAG+AGG | - | chr7.4:80763952-80763971 | MS.gene95441:intron | 35.0% |
| !!! | AACCACAGTTTTTTTCTGTG+TGG | + | chr7.4:80763335-80763354 | None:intergenic | 35.0% |
| !!! | ACCCTTCTTTTGTTTTACCA+TGG | - | chr7.4:80763590-80763609 | MS.gene95441:intron | 35.0% |
| AATTCTTGGTGGGATTACTC+TGG | + | chr7.4:80762399-80762418 | None:intergenic | 40.0% | |
| AGCCACACAGAAAAAAACTG+TGG | - | chr7.4:80763330-80763349 | MS.gene95441:CDS | 40.0% | |
| ATCAAAGGCTGCTGAGAAAA+TGG | - | chr7.4:80763921-80763940 | MS.gene95441:intron | 40.0% | |
| CAAGTCCTTTGTACCATACA+AGG | - | chr7.4:80763644-80763663 | MS.gene95441:intron | 40.0% | |
| CACATTTCTGACAAAGCTCA+AGG | + | chr7.4:80763732-80763751 | None:intergenic | 40.0% | |
| CGGAGTTTCCTTAGAATTCT+TGG | + | chr7.4:80762413-80762432 | None:intergenic | 40.0% | |
| CTCTCTTCTTCTGCAGTTAA+TGG | + | chr7.4:80763682-80763701 | None:intergenic | 40.0% | |
| CTCTTCCTTGTATGGTACAA+AGG | + | chr7.4:80763652-80763671 | None:intergenic | 40.0% | |
| GAGAAAATGGGGATACCAAT+GGG | - | chr7.4:80763934-80763953 | MS.gene95441:intron | 40.0% | |
| GAGAATGTTGTTGGCATCAA+AGG | - | chr7.4:80763906-80763925 | MS.gene95441:intron | 40.0% | |
| GCCATAGCAATGTTACGTAA+AGG | + | chr7.4:80762710-80762729 | None:intergenic | 40.0% | |
| GGACTTGACTCAGAGAAAAT+TGG | + | chr7.4:80763631-80763650 | None:intergenic | 40.0% | |
| GGTGAAAACCCTATTGTGTT+TGG | - | chr7.4:80763850-80763869 | MS.gene95441:intron | 40.0% | |
| TATGCCATACCTCTTGAGAA+GGG | - | chr7.4:80764401-80764420 | MS.gene95441:CDS | 40.0% | |
| TCAAAGGCTGCTGAGAAAAT+GGG | - | chr7.4:80763922-80763941 | MS.gene95441:intron | 40.0% | |
| TGAGAAAATGGGGATACCAA+TGG | - | chr7.4:80763933-80763952 | MS.gene95441:intron | 40.0% | |
| TGCTAAGGAGAGAATGTTGT+TGG | - | chr7.4:80763897-80763916 | MS.gene95441:intron | 40.0% | |
| TGGAAAGGTGAACCATAAGA+TGG | - | chr7.4:80764275-80764294 | MS.gene95441:CDS | 40.0% | |
| TGTTTGTAACAGGAAGGAGT+TGG | - | chr7.4:80764577-80764596 | MS.gene95441:CDS | 40.0% | |
| TTATGCCATACCTCTTGAGA+AGG | - | chr7.4:80764400-80764419 | MS.gene95441:CDS | 40.0% | |
| ! | GATTTGAGAAGTTTGGTGGT+TGG | + | chr7.4:80762599-80762618 | None:intergenic | 40.0% |
| ! | GCTGCAAAAGCACATGAATT+AGG | - | chr7.4:80764249-80764268 | MS.gene95441:CDS | 40.0% |
| !! | AAAAGAGTTTTTCGACGTCC+TGG | + | chr7.4:80762568-80762587 | None:intergenic | 40.0% |
| !! | ACTGCTGGAAAAAGTATTGC+CGG | - | chr7.4:80762782-80762801 | MS.gene95441:intron | 40.0% |
| !! | CAAAGCATGGATTGGAACAA+TGG | - | chr7.4:80763244-80763263 | MS.gene95441:CDS | 40.0% |
| !! | GAATGAGTGATTTGCTGAGA+TGG | - | chr7.4:80763557-80763576 | MS.gene95441:intron | 40.0% |
| !! | GGCAGTTGATTTGAGAAGTT+TGG | + | chr7.4:80762606-80762625 | None:intergenic | 40.0% |
| !! | TTACGTGGAATGCTGGTTTA+CGG | - | chr7.4:80762821-80762840 | MS.gene95441:intron | 40.0% |
| AACCAGCATTCCACGTAAAC+CGG | + | chr7.4:80762819-80762838 | None:intergenic | 45.0% | |
| AAGATTGCTAATGGTCCTGG+TGG | - | chr7.4:80764093-80764112 | MS.gene95441:CDS | 45.0% | |
| AAGCGATCTGCTGACATCAA+CGG | + | chr7.4:80762906-80762925 | None:intergenic | 45.0% | |
| ACCTCAACATCCATGTACCA+AGG | + | chr7.4:80762664-80762683 | None:intergenic | 45.0% | |
| ACCTTGGTACATGGATGTTG+AGG | - | chr7.4:80762660-80762679 | MS.gene95441:CDS | 45.0% | |
| ATTAGATGTAGGAGCGAGAG+CGG | + | chr7.4:80762480-80762499 | None:intergenic | 45.0% | |
| CAAAGGCTGCTGAGAAAATG+GGG | - | chr7.4:80763923-80763942 | MS.gene95441:intron | 45.0% | |
| GAAGAGATTACCGAAGATGG+AGG | + | chr7.4:80762929-80762948 | None:intergenic | 45.0% | |
| GAGAAGATTGCTAATGGTCC+TGG | - | chr7.4:80764090-80764109 | MS.gene95441:CDS | 45.0% | |
| GGAACTCAGCACCATGAAAA+CGG | + | chr7.4:80763077-80763096 | None:intergenic | 45.0% | |
| GGCAATGAATCTTGCTTCCA+TGG | + | chr7.4:80763610-80763629 | None:intergenic | 45.0% | |
| TATGGCATAACAGTCTCCAC+AGG | + | chr7.4:80764390-80764409 | None:intergenic | 45.0% | |
| TCTTCTGCAGTTAATGGCTC+TGG | + | chr7.4:80763676-80763695 | None:intergenic | 45.0% | |
| ! | ATGTCTGAGGCTCTATCCTT+TGG | - | chr7.4:80764318-80764337 | MS.gene95441:CDS | 45.0% |
| ! | CTTTTCATTCCTCAGGAGCA+CGG | + | chr7.4:80763175-80763194 | None:intergenic | 45.0% |
| ! | GAAGATGCTCATGATAACGC+TGG | - | chr7.4:80762848-80762867 | MS.gene95441:intron | 45.0% |
| ! | GTATATGCCATTTGGTCCTG+TGG | - | chr7.4:80764371-80764390 | MS.gene95441:CDS | 45.0% |
| ! | TAAACCGGCTTCATTCAACC+CGG | + | chr7.4:80762804-80762823 | None:intergenic | 45.0% |
| ! | TGAGGAGAATAGAGGAGTGT+TGG | - | chr7.4:80764425-80764444 | MS.gene95441:CDS | 45.0% |
| ! | TTGAATGAAGCCGGTTTACG+TGG | - | chr7.4:80762806-80762825 | MS.gene95441:intron | 45.0% |
| !! | CCTTTGGTTTGAGCAATGCA+GGG | - | chr7.4:80764334-80764353 | MS.gene95441:CDS | 45.0% |
| !! | CTGCTGGAAAAAGTATTGCC+GGG | - | chr7.4:80762783-80762802 | MS.gene95441:intron | 45.0% |
| !! | TCCTTTGGTTTGAGCAATGC+AGG | - | chr7.4:80764333-80764352 | MS.gene95441:CDS | 45.0% |
| !!! | GGCAATACTTTTTCCAGCAG+TGG | + | chr7.4:80762783-80762802 | None:intergenic | 45.0% |
| !!! | GTTTTGTGGCGGTGTTGTAT+CGG | + | chr7.4:80762433-80762452 | None:intergenic | 45.0% |
| !!! | TTGTCGATGATGGCGGTTTT+TGG | + | chr7.4:80762511-80762530 | None:intergenic | 45.0% |
| !! | AAAATTATGTAAAAAAAAAT+AGG | - | chr7.4:80763382-80763401 | MS.gene95441:CDS | 5.0% |
| ACAGTCTCCACAGGACCAAA+TGG | + | chr7.4:80764381-80764400 | None:intergenic | 50.0% | |
| AGAAGGGCTGAGGAGAATAG+AGG | - | chr7.4:80764417-80764436 | MS.gene95441:CDS | 50.0% | |
| AGCAGTGGTAGCATCTTCTC+CGG | + | chr7.4:80762768-80762787 | None:intergenic | 50.0% | |
| AGGAGGGTTGTTGTCGATGA+TGG | + | chr7.4:80762521-80762540 | None:intergenic | 50.0% | |
| ATACCTCTTGAGAAGGGCTG+AGG | - | chr7.4:80764407-80764426 | MS.gene95441:CDS | 50.0% | |
| ATCGAAAAAAGTGGCGCGTG+TGG | + | chr7.4:80762735-80762754 | None:intergenic | 50.0% | |
| CAATGGTCGACCTTGGTACA+TGG | - | chr7.4:80762651-80762670 | MS.gene95441:CDS | 50.0% | |
| CAGATCGCTTCCTCCATCTT+CGG | - | chr7.4:80762916-80762935 | MS.gene95441:CDS | 50.0% | |
| CATGTACCAAGGTCGACCAT+TGG | + | chr7.4:80762653-80762672 | None:intergenic | 50.0% | |
| CCCTGCATTGCTCAAACCAA+AGG | + | chr7.4:80764337-80764356 | None:intergenic | 50.0% | |
| GCTCTGGTCTCTTCCTTGTA+TGG | + | chr7.4:80763660-80763679 | None:intergenic | 50.0% | |
| GCTTTGACAGGCAACTGATG+AGG | - | chr7.4:80764457-80764476 | MS.gene95441:CDS | 50.0% | |
| GGCTGTGATCGCAATCTCAA+AGG | - | chr7.4:80762869-80762888 | MS.gene95441:intron | 50.0% | |
| GTTGCAAGAACAACTCCACC+AGG | + | chr7.4:80764111-80764130 | None:intergenic | 50.0% | |
| TCAGCCCTTCTCAAGAGGTA+TGG | + | chr7.4:80764408-80764427 | None:intergenic | 50.0% | |
| TCTTGGTGGGATTACTCTGG+TGG | + | chr7.4:80762396-80762415 | None:intergenic | 50.0% | |
| TTAGATGTAGGAGCGAGAGC+GGG | + | chr7.4:80762479-80762498 | None:intergenic | 50.0% | |
| ! | AGGGTTGTTGTCGATGATGG+CGG | + | chr7.4:80762518-80762537 | None:intergenic | 50.0% |
| ! | ATTGCCGGGTTGAATGAAGC+CGG | - | chr7.4:80762797-80762816 | MS.gene95441:intron | 50.0% |
| ! | GTAACAGGAAGGAGTTGGTC+AGG | - | chr7.4:80764582-80764601 | MS.gene95441:CDS | 50.0% |
| GACGTCCTGGAAGTTGAGCT+CGG | + | chr7.4:80762555-80762574 | None:intergenic | 55.0% | |
| GGAGAAGATGCTACCACTGC+TGG | - | chr7.4:80762767-80762786 | MS.gene95441:intron | 55.0% | |
| TCTCCTCAGCCCTTCTCAAG+AGG | + | chr7.4:80764413-80764432 | None:intergenic | 55.0% | |
| TGCGGTTGCAGTCACGAATG+CGG | + | chr7.4:80763098-80763117 | None:intergenic | 55.0% | |
| TGCTGCTGACGTGACGTTTC+TGG | - | chr7.4:80763134-80763153 | MS.gene95441:CDS | 55.0% | |
| TGTCTGATTCCGTGCTCCTG+AGG | - | chr7.4:80763163-80763182 | MS.gene95441:CDS | 55.0% | |
| ! | AGCCGGTTTACGTGGAATGC+TGG | - | chr7.4:80762814-80762833 | MS.gene95441:intron | 55.0% |
| ! | CAGGAGCACGGAATCAGACA+CGG | + | chr7.4:80763163-80763182 | None:intergenic | 55.0% |
| ! | TGGCTGCATCAGGCTTTGAC+AGG | - | chr7.4:80764445-80764464 | MS.gene95441:CDS | 55.0% |
| !! | AGAGGAGTGTTGGCTGCATC+AGG | - | chr7.4:80764435-80764454 | MS.gene95441:CDS | 55.0% |
| !! | GGGTTGGAAGGGTTTTGTGG+CGG | + | chr7.4:80762444-80762463 | None:intergenic | 55.0% |
| CTGGAAGTTGAGCTCGGCGT+CGG | + | chr7.4:80762549-80762568 | None:intergenic | 60.0% | |
| GTCGAGCCAATGGTCGACCT+TGG | - | chr7.4:80762644-80762663 | MS.gene95441:CDS | 60.0% | |
| TGCCATCCTCCATGCTACCG+CGG | - | chr7.4:80762622-80762641 | MS.gene95441:CDS | 60.0% | |
| TGGAAGTTGAGCTCGGCGTC+GGG | + | chr7.4:80762548-80762567 | None:intergenic | 60.0% | |
| !!! | GGCGGGTTGGAAGGGTTTTG+TGG | + | chr7.4:80762447-80762466 | None:intergenic | 60.0% |
| CGACGCCGAGCTCAACTTCC+AGG | - | chr7.4:80762547-80762566 | MS.gene95441:CDS | 65.0% | |
| GACCGCGGTAGCATGGAGGA+TGG | + | chr7.4:80762627-80762646 | None:intergenic | 65.0% | |
| TGCTACCGCGGTCGAGCCAA+TGG | - | chr7.4:80762634-80762653 | MS.gene95441:CDS | 65.0% | |
| ! | AAGTTGAGCTCGGCGTCGGG+AGG | + | chr7.4:80762545-80762564 | None:intergenic | 65.0% |
| ! | AGTTGAGCTCGGCGTCGGGA+GGG | + | chr7.4:80762544-80762563 | None:intergenic | 65.0% |
| ! | TTGGCTCGACCGCGGTAGCA+TGG | + | chr7.4:80762634-80762653 | None:intergenic | 65.0% |
| !! | GAGGTGAGGGCGGGTTGGAA+GGG | + | chr7.4:80762455-80762474 | None:intergenic | 65.0% |
| !! | GTCGACCATTGGCTCGACCG+CGG | + | chr7.4:80762642-80762661 | None:intergenic | 65.0% |
| AGCGAGAGCGGGCGAGGTGA+GGG | + | chr7.4:80762468-80762487 | None:intergenic | 70.0% | |
| GCTCGACCGCGGTAGCATGG+AGG | + | chr7.4:80762631-80762650 | None:intergenic | 70.0% | |
| TGTAGGAGCGAGAGCGGGCG+AGG | + | chr7.4:80762474-80762493 | None:intergenic | 70.0% | |
| !! | CGAGGTGAGGGCGGGTTGGA+AGG | + | chr7.4:80762456-80762475 | None:intergenic | 70.0% |
| AGAGCGGGCGAGGTGAGGGC+GGG | + | chr7.4:80762464-80762483 | None:intergenic | 75.0% | |
| GAGAGCGGGCGAGGTGAGGG+CGG | + | chr7.4:80762465-80762484 | None:intergenic | 75.0% | |
| GAGCGAGAGCGGGCGAGGTG+AGG | + | chr7.4:80762469-80762488 | None:intergenic | 75.0% | |
| ! | CTCGGCGTCGGGAGGGAGGA+GGG | + | chr7.4:80762537-80762556 | None:intergenic | 75.0% |
| ! | TGAGCTCGGCGTCGGGAGGG+AGG | + | chr7.4:80762541-80762560 | None:intergenic | 75.0% |
| ! | CGGGCGAGGTGAGGGCGGGT+TGG | + | chr7.4:80762460-80762479 | None:intergenic | 80.0% |
| !! | GCTCGGCGTCGGGAGGGAGG+AGG | + | chr7.4:80762538-80762557 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 80762389 | 80764628 | 80762389 | ID=MS.gene95441 |
| chr7.4 | mRNA | 80762389 | 80764628 | 80762389 | ID=MS.gene95441.t1;Parent=MS.gene95441 |
| chr7.4 | exon | 80764080 | 80764628 | 80764080 | ID=MS.gene95441.t1.exon1;Parent=MS.gene95441.t1 |
| chr7.4 | CDS | 80764080 | 80764628 | 80764080 | ID=cds.MS.gene95441.t1;Parent=MS.gene95441.t1 |
| chr7.4 | exon | 80762870 | 80763515 | 80762870 | ID=MS.gene95441.t1.exon2;Parent=MS.gene95441.t1 |
| chr7.4 | CDS | 80762870 | 80763515 | 80762870 | ID=cds.MS.gene95441.t1;Parent=MS.gene95441.t1 |
| chr7.4 | exon | 80762539 | 80762779 | 80762539 | ID=MS.gene95441.t1.exon3;Parent=MS.gene95441.t1 |
| chr7.4 | CDS | 80762539 | 80762779 | 80762539 | ID=cds.MS.gene95441.t1;Parent=MS.gene95441.t1 |
| chr7.4 | exon | 80762389 | 80762428 | 80762389 | ID=MS.gene95441.t1.exon4;Parent=MS.gene95441.t1 |
| chr7.4 | CDS | 80762389 | 80762428 | 80762389 | ID=cds.MS.gene95441.t1;Parent=MS.gene95441.t1 |
| Gene Sequence |
| Protein sequence |
