AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene95836

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene95836.t1 MTR_8g105780 97.844 371 4 1 1 367 1 371 0.0 747
MS.gene95836.t1 MTR_5g029680 46.125 271 128 6 18 272 32 300 3.79e-67 220
MS.gene95836.t1 MTR_4g077970 43.284 268 144 3 18 278 12 278 1.42e-66 218
MS.gene95836.t1 MTR_1g102860 50.000 198 89 4 18 215 40 227 8.23e-56 186
MS.gene95836.t1 MTR_7g095680 48.454 194 96 2 18 211 49 238 1.77e-53 181
MS.gene95836.t1 MTR_8g087540 45.771 201 98 3 9 207 3 194 3.28e-50 173
MS.gene95836.t1 MTR_3g104550 45.876 194 98 2 18 211 46 232 5.79e-50 172
MS.gene95836.t1 MTR_6g043060 46.860 207 95 7 4 210 10 201 1.59e-48 167
MS.gene95836.t1 MTR_1g061170 41.739 230 124 4 16 244 47 267 6.22e-48 168
MS.gene95836.t1 MTR_1g071360 45.699 186 83 3 18 203 32 199 6.18e-47 163
MS.gene95836.t1 MTR_1g071360 45.699 186 83 3 18 203 29 196 1.05e-46 163
MS.gene95836.t1 MTR_6g086805 46.193 197 95 4 16 212 9 194 2.48e-45 159
MS.gene95836.t1 MTR_2g100680 44.554 202 99 5 7 206 18 208 5.97e-45 160
MS.gene95836.t1 MTR_2g017890 45.226 199 95 4 9 201 4 194 1.08e-44 158
MS.gene95836.t1 MTR_8g083100 47.917 192 87 6 19 210 23 201 1.17e-44 160
MS.gene95836.t1 MTR_2g100670 44.500 200 98 5 4 203 21 207 2.06e-44 155
MS.gene95836.t1 MTR_2g100670 44.500 200 98 5 4 203 129 315 1.93e-43 155
MS.gene95836.t1 MTR_5g017470 42.373 177 74 2 17 166 8 183 1.11e-33 126
MS.gene95836.t1 MTR_5g089170 60.417 96 37 1 17 112 24 118 2.67e-33 124
MS.gene95836.t1 MTR_3g101870 62.766 94 34 1 17 110 23 115 3.26e-33 127
MS.gene95836.t1 MTR_5g010680 59.574 94 37 1 17 110 23 115 4.84e-33 126
MS.gene95836.t1 MTR_0020s0020 60.638 94 36 1 17 110 32 124 4.81e-32 123
MS.gene95836.t1 MTR_7g091370 51.961 102 48 1 9 110 13 113 1.10e-30 117
MS.gene95836.t1 MTR_1g100777 57.447 94 39 1 17 110 17 109 2.45e-30 118
MS.gene95836.t1 MTR_4g088900 40.645 155 82 5 17 162 32 185 1.71e-26 105
MS.gene95836.t1 MTR_5g047190 53.684 95 36 3 26 113 1 94 1.66e-21 88.6
MS.gene95836.t1 MTR_1g061170 35.928 167 98 3 79 244 14 172 5.77e-21 93.2
MS.gene95836.t1 MTR_4g045757 57.377 61 25 1 16 76 12 71 4.27e-14 67.4
MS.gene95836.t1 MTR_6g044340 32.857 140 82 4 71 210 14 141 1.06e-11 65.1
MS.gene95836.t1 MTR_2g043940 29.677 155 86 2 71 215 14 155 2.69e-11 64.7
MS.gene95836.t1 MTR_4g077970 33.333 105 63 2 156 253 2 106 7.38e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene95836.t1 AT1G67970 43.978 357 159 6 16 356 17 348 5.80e-90 275
MS.gene95836.t1 AT1G32330 46.400 250 122 4 13 251 32 280 3.51e-63 209
MS.gene95836.t1 AT1G32330 46.400 250 122 4 13 251 32 280 3.80e-63 209
MS.gene95836.t1 AT5G16820 46.281 242 120 4 15 248 24 263 7.20e-60 201
MS.gene95836.t1 AT5G16820 46.281 242 120 4 15 248 24 263 7.20e-60 201
MS.gene95836.t1 AT4G17750 46.748 246 111 5 18 244 52 296 2.13e-59 200
MS.gene95836.t1 AT3G22830 48.768 203 102 2 18 219 61 262 9.31e-56 188
MS.gene95836.t1 AT2G26150 49.206 189 89 2 18 206 44 225 9.93e-56 186
MS.gene95836.t1 AT2G26150 49.206 189 89 2 18 206 44 225 9.93e-56 186
MS.gene95836.t1 AT3G02990 48.387 217 108 3 4 219 9 222 1.66e-55 189
MS.gene95836.t1 AT3G51910 43.814 194 87 4 18 211 29 200 8.12e-50 168
MS.gene95836.t1 AT5G03720 43.455 191 99 3 16 206 53 234 3.26e-47 166
MS.gene95836.t1 AT5G03720 43.455 191 99 3 16 206 53 234 3.26e-47 166
MS.gene95836.t1 AT5G43840 44.211 190 85 2 17 206 18 186 2.18e-46 160
MS.gene95836.t1 AT3G24520 43.939 198 81 3 16 213 15 182 3.15e-46 160
MS.gene95836.t1 AT4G13980 45.000 200 99 4 4 203 9 197 3.10e-44 159
MS.gene95836.t1 AT5G45710 41.981 212 108 3 11 218 6 206 3.53e-44 156
MS.gene95836.t1 AT5G45710 41.981 212 108 3 11 218 6 206 3.53e-44 156
MS.gene95836.t1 AT3G63350 40.284 211 111 4 17 227 27 222 8.63e-43 150
MS.gene95836.t1 AT5G54070 40.404 198 102 2 14 211 67 248 1.77e-42 151
MS.gene95836.t1 AT4G18880 45.685 197 97 4 12 206 9 197 1.46e-39 145
MS.gene95836.t1 AT1G46264 55.263 114 50 1 9 122 25 137 5.03e-36 134
MS.gene95836.t1 AT4G11660 59.574 94 37 1 17 110 58 150 4.96e-32 124
MS.gene95836.t1 AT5G62020 53.636 110 49 2 2 110 6 114 2.97e-31 120
MS.gene95836.t1 AT4G36990 57.447 94 39 1 17 110 13 105 3.23e-31 120
MS.gene95836.t1 AT2G41690 53.211 109 44 2 11 113 27 134 4.92e-31 118
MS.gene95836.t1 AT2G26150 42.308 130 69 1 77 206 47 170 3.96e-23 98.2
MS.gene95836.t1 AT2G26150 42.308 130 69 1 77 206 47 170 3.96e-23 98.2
MS.gene95836.t1 AT4G18870 49.000 100 49 2 7 106 2 99 6.31e-21 92.0
MS.gene95836.t1 AT4G18870 42.276 123 61 3 15 135 143 257 3.50e-20 90.1
MS.gene95836.t1 AT4G19630 36.842 95 56 2 15 106 8 101 1.19e-12 65.1
MS.gene95836.t1 AT1G77570 39.583 96 54 3 14 106 22 116 9.86e-12 62.8

Find 79 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATTGTGTTTGAAATAAT+TGG 0.094053 4.3:+1298604 None:intergenic
GTTGAATTTATCAGGGTTTC+AGG 0.157083 4.3:-1297763 MS.gene95836:intron
AGGTTCTGGTTGCTTATTAA+AGG 0.234573 4.3:+1297208 None:intergenic
TTGCAAATGAAAACTTCATT+AGG 0.259058 4.3:-1297715 MS.gene95836:CDS
GGTTCATCGCGATTGTCTTT+TGG 0.270022 4.3:+1297614 None:intergenic
TGCAAATGAAAACTTCATTA+GGG 0.270385 4.3:-1297714 MS.gene95836:CDS
CTTGAATAAATGTTACGATA+TGG 0.302015 4.3:-1298726 MS.gene95836:CDS
CGTGCAATGCCCTGGATTCT+TGG 0.305963 4.3:-1297396 MS.gene95836:CDS
TTATTGTGTTTGAAATAATT+GGG 0.306935 4.3:+1298605 None:intergenic
GCAGCAGATGCTCTCATTCT+TGG 0.308364 4.3:-1297426 MS.gene95836:CDS
TTCACCCTAAGGAAAATAAT+TGG 0.343688 4.3:-1297364 MS.gene95836:CDS
GTTTCTTGTACCTGATTTAC+CGG 0.350562 4.3:-1297087 MS.gene95836:CDS
AACGGAGAATGATTATCTAA+TGG 0.359885 4.3:+1297107 None:intergenic
GCGAGCGAGAAGGGTGGTTC+TGG 0.371236 4.3:-1298764 MS.gene95836:CDS
TGAAGCGATGATTATGGAAA+TGG 0.375364 4.3:-1296919 MS.gene95836:CDS
CAACCGATTCCATCATCTCT+TGG 0.401097 4.3:-1298691 MS.gene95836:CDS
CTACTGAGTGATCGCCTTGA+AGG 0.403981 4.3:-1297464 MS.gene95836:CDS
GATGCTTCTCCATTCCTTCA+AGG 0.410224 4.3:+1297450 None:intergenic
TGATTTACTGCTTCTTGTGA+TGG 0.416635 4.3:+1297593 None:intergenic
GGAAAATTGATGCAGATCAC+TGG 0.420160 4.3:-1297742 MS.gene95836:CDS
TGCTGAAGAATATACGTAGA+AGG 0.420862 4.3:-1297679 MS.gene95836:CDS
GTCTGTCATCTTGGTTACCT+TGG 0.422781 4.3:+1297312 None:intergenic
GAACCGTCATCCGGTAAATC+AGG 0.426775 4.3:+1297077 None:intergenic
ACGGAGAATGATTATCTAAT+GGG 0.429612 4.3:+1297108 None:intergenic
GCAGGAGATCGTGGAACAAC+AGG 0.434299 4.3:+1297230 None:intergenic
TCTGTAGAAACCTCAGGTTC+TGG 0.439677 4.3:+1297194 None:intergenic
AAGCAGTAAATCATGGCCTT+TGG 0.439818 4.3:-1297583 MS.gene95836:CDS
ATCATCCCATCAGAAGAAAC+TGG 0.445617 4.3:+1297290 None:intergenic
AAGAAACTGGTCTGTCATCT+TGG 0.448044 4.3:+1297303 None:intergenic
AGAAGTTGAGAATCTAAAAT+CGG 0.450572 4.3:-1297558 MS.gene95836:CDS
GAACCTGAGGTTTCTACAGA+TGG 0.463364 4.3:-1297191 MS.gene95836:CDS
AATTGGCGTTTCTCTGAAGC+AGG 0.464691 4.3:-1297347 MS.gene95836:CDS
CGAGAAGGGTGGTTCTGGTT+CGG 0.469624 4.3:-1298759 MS.gene95836:CDS
GCAGCAACAGCGAGCGAGAA+GGG 0.473861 4.3:-1298773 MS.gene95836:CDS
AACCCATCTGTAGAAACCTC+AGG 0.474952 4.3:+1297188 None:intergenic
TGTTCCCACGAACCGTCATC+CGG 0.475845 4.3:+1297068 None:intergenic
GGTTCAGCTGCTTCACCCTA+AGG 0.476383 4.3:-1297375 MS.gene95836:CDS
TCGTAACATTTATTCAAGAA+AGG 0.477793 4.3:+1298731 None:intergenic
GCTTACTCTCAGAAGATTCA+AGG 0.482301 4.3:+1297492 None:intergenic
AGCAGCTGAACCAAGAATCC+AGG 0.483387 4.3:+1297386 None:intergenic
ATTTACCGGATGACGGTTCG+TGG 0.488372 4.3:-1297073 MS.gene95836:CDS
GAGTGATCGCCTTGAAGGAA+TGG 0.496645 4.3:-1297459 MS.gene95836:CDS
TCTGGTTGCTTATTAAAGGC+AGG 0.497515 4.3:+1297212 None:intergenic
GTCATGGTCGTGCAATGCCC+TGG 0.501216 4.3:-1297404 MS.gene95836:CDS
GACAGACCAGTTTCTTCTGA+TGG 0.504911 4.3:-1297296 MS.gene95836:CDS
TCTCTGAAGCAGGGAATATG+TGG 0.508698 4.3:-1297337 MS.gene95836:CDS
GATTCTCAACTTCTCTCCAA+AGG 0.510423 4.3:+1297567 None:intergenic
TATTGTGTTTGAAATAATTG+GGG 0.510469 4.3:+1298606 None:intergenic
GATGCTCTCATTCTTGGTCA+TGG 0.526629 4.3:-1297420 MS.gene95836:CDS
GTTGAGTTGTCTGACGAAGC+TGG 0.529603 4.3:+1298577 None:intergenic
GAGATGATGGAATCGGTTGA+AGG 0.531686 4.3:+1298695 None:intergenic
ATCATCTCTTGGTCCGCTGA+TGG 0.533246 4.3:-1298680 MS.gene95836:CDS
ATCAGCGGACCAAGAGATGA+TGG 0.535757 4.3:+1298682 None:intergenic
GGTAAATCAGGTACAAGAAA+CGG 0.535891 4.3:+1297089 None:intergenic
GAGTGAGAATTGATCAGCGT+TGG 0.547894 4.3:+1298637 None:intergenic
GTACCTGATTTACCGGATGA+CGG 0.554758 4.3:-1297080 MS.gene95836:CDS
AACTGTTAGTGACATGGAGA+TGG 0.556871 4.3:-1296982 MS.gene95836:CDS
ACAGACCAGTTTCTTCTGAT+GGG 0.557728 4.3:-1297295 MS.gene95836:CDS
GTTTGACCAACTCCTGCGTG+AGG 0.558206 4.3:+1297525 None:intergenic
GGACCAAGAGATGATGGAAT+CGG 0.561010 4.3:+1298688 None:intergenic
TTTACCGGATGACGGTTCGT+GGG 0.565563 4.3:-1297072 MS.gene95836:CDS
AGCAGCAACAGCGAGCGAGA+AGG 0.566061 4.3:-1298774 MS.gene95836:CDS
TCACAAGAAGCAGTAAATCA+TGG 0.568437 4.3:-1297590 MS.gene95836:CDS
TGCTGATCTGCAGCAACATG+TGG 0.573167 4.3:+1297650 None:intergenic
AACCTGAGGTTTCTACAGAT+GGG 0.578276 4.3:-1297190 MS.gene95836:CDS
TTTGACCAACTCCTGCGTGA+GGG 0.583918 4.3:+1297526 None:intergenic
GAAAATTGATGCAGATCACT+GGG 0.584009 4.3:-1297741 MS.gene95836:CDS
GCAAATGAAAACTTCATTAG+GGG 0.585563 4.3:-1297713 MS.gene95836:CDS
GAAGGGTGGTTCTGGTTCGG+TGG 0.586874 4.3:-1298756 MS.gene95836:CDS
TAATAAGCAACCAGAACCTG+AGG 0.601561 4.3:-1297204 MS.gene95836:CDS
GCAGCTGAACCAAGAATCCA+GGG 0.614903 4.3:+1297387 None:intergenic
TTATTAAAGGCAGGAGATCG+TGG 0.635093 4.3:+1297221 None:intergenic
CTCTGAAGCAGGGAATATGT+GGG 0.641241 4.3:-1297336 MS.gene95836:CDS
ATTGGCGTTTCTCTGAAGCA+GGG 0.648668 4.3:-1297346 MS.gene95836:CDS
GGAGCAAACTGTTAGTGACA+TGG 0.649582 4.3:-1296988 MS.gene95836:CDS
GCAGGGAATATGTGGGACCA+AGG 0.652641 4.3:-1297329 MS.gene95836:CDS
GCAACAGCGAGCGAGAAGGG+TGG 0.652707 4.3:-1298770 MS.gene95836:CDS
GAAACTATTGTTACCATCAG+CGG 0.656676 4.3:+1298667 None:intergenic
AGATACTGATCGTGAAAACG+AGG 0.683103 4.3:-1297009 MS.gene95836:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATATGAATTAATAATTGA+AGG + chr4.3:1297159-1297178 None:intergenic 15.0%
!! CATATGAATTAATAATTGAA+GGG + chr4.3:1297158-1297177 None:intergenic 15.0%
!! TAGATAAACAAAATTATTGT+AGG + chr4.3:1297835-1297854 None:intergenic 15.0%
!!! ATTATATTATTAATGGGTAA+AGG - chr4.3:1297258-1297277 MS.gene95836:CDS 15.0%
!!! ATTATTGTGTTTGAAATAAT+TGG + chr4.3:1297083-1297102 None:intergenic 15.0%
!!! TACAATAATTTTGTTTATCT+AGG - chr4.3:1297834-1297853 MS.gene95836:intron 15.0%
!!! TTATTGTGTTTGAAATAATT+GGG + chr4.3:1297082-1297101 None:intergenic 15.0%
!! ACATAGTACTATATAAATCA+AGG + chr4.3:1297294-1297313 None:intergenic 20.0%
!! ATTTAAACACAAACTGATAT+AGG + chr4.3:1297228-1297247 None:intergenic 20.0%
!! TGATTTATATAGTACTATGT+AGG - chr4.3:1297294-1297313 MS.gene95836:CDS 20.0%
!! TTTAAACACAAACTGATATA+GGG + chr4.3:1297227-1297246 None:intergenic 20.0%
!!! ATAAAATAGTCAAAGTGTTT+TGG + chr4.3:1297613-1297632 None:intergenic 20.0%
!!! TATTGTGTTTGAAATAATTG+GGG + chr4.3:1297081-1297100 None:intergenic 20.0%
! AAAATCCATTAGTAGTACTT+AGG - chr4.3:1297320-1297339 MS.gene95836:CDS 25.0%
! AAATCCATTAGTAGTACTTA+GGG - chr4.3:1297321-1297340 MS.gene95836:CDS 25.0%
! CTTGAATAAATGTTACGATA+TGG - chr4.3:1296958-1296977 MS.gene95836:CDS 25.0%
! TATGGATAAACAAGTTAATC+AGG + chr4.3:1297698-1297717 None:intergenic 25.0%
! TCGTAACATTTATTCAAGAA+AGG + chr4.3:1296956-1296975 None:intergenic 25.0%
! TGCAAATGAAAACTTCATTA+GGG - chr4.3:1297970-1297989 MS.gene95836:intron 25.0%
! TTGCAAATGAAAACTTCATT+AGG - chr4.3:1297969-1297988 MS.gene95836:intron 25.0%
!! AGAAGTTGAGAATCTAAAAT+CGG - chr4.3:1298126-1298145 MS.gene95836:intron 25.0%
!!! CAGTATCTTCAACATTTTTT+AGG + chr4.3:1298663-1298682 None:intergenic 25.0%
!!! TCTTCAACATTTTTTAGGAT+AGG + chr4.3:1298658-1298677 None:intergenic 25.0%
AAACTGATATAGGGTTAATG+AGG + chr4.3:1297218-1297237 None:intergenic 30.0%
AACGGAGAATGATTATCTAA+TGG + chr4.3:1298580-1298599 None:intergenic 30.0%
AATCCATTAGTAGTACTTAG+GGG - chr4.3:1297322-1297341 MS.gene95836:CDS 30.0%
ACACTTTAAACAAATCGAGA+CGG + chr4.3:1297872-1297891 None:intergenic 30.0%
ACGGAGAATGATTATCTAAT+GGG + chr4.3:1298579-1298598 None:intergenic 30.0%
GATGACTGTTGAATTTATCA+GGG - chr4.3:1297914-1297933 MS.gene95836:intron 30.0%
GCAAATGAAAACTTCATTAG+GGG - chr4.3:1297971-1297990 MS.gene95836:intron 30.0%
TGATGACTGTTGAATTTATC+AGG - chr4.3:1297913-1297932 MS.gene95836:intron 30.0%
TGTAGTAAAGGTTTCTCAAA+AGG + chr4.3:1297778-1297797 None:intergenic 30.0%
TTCACCCTAAGGAAAATAAT+TGG - chr4.3:1298320-1298339 MS.gene95836:intron 30.0%
! AAACGCCAATTATTTTCCTT+AGG + chr4.3:1298328-1298347 None:intergenic 30.0%
! AACGCCAATTATTTTCCTTA+GGG + chr4.3:1298327-1298346 None:intergenic 30.0%
!!! TGATTTTGAAGCGATGATTA+TGG - chr4.3:1298759-1298778 MS.gene95836:CDS 30.0%
!!! TTACTTCTACGACACTTTTT+TGG - chr4.3:1297352-1297371 MS.gene95836:CDS 30.0%
AACAGTGGTCTGTTCAAATT+CGG + chr4.3:1297438-1297457 None:intergenic 35.0%
GAAAATTGATGCAGATCACT+GGG - chr4.3:1297943-1297962 MS.gene95836:intron 35.0%
GAAACTATTGTTACCATCAG+CGG + chr4.3:1297020-1297039 None:intergenic 35.0%
GGTAAATCAGGTACAAGAAA+CGG + chr4.3:1298598-1298617 None:intergenic 35.0%
GTTGAATTTATCAGGGTTTC+AGG - chr4.3:1297921-1297940 MS.gene95836:intron 35.0%
GTTTCTTGTACCTGATTTAC+CGG - chr4.3:1298597-1298616 MS.gene95836:CDS 35.0%
TCACAAGAAGCAGTAAATCA+TGG - chr4.3:1298094-1298113 MS.gene95836:intron 35.0%
TGAAGCGATGATTATGGAAA+TGG - chr4.3:1298765-1298784 MS.gene95836:CDS 35.0%
TGATATAGGGTTAATGAGGT+CGG + chr4.3:1297214-1297233 None:intergenic 35.0%
TGATTTACTGCTTCTTGTGA+TGG + chr4.3:1298094-1298113 None:intergenic 35.0%
TGCTGAAGAATATACGTAGA+AGG - chr4.3:1298005-1298024 MS.gene95836:intron 35.0%
TTTCAATTCAGCAGCATCAA+AGG + chr4.3:1297733-1297752 None:intergenic 35.0%
! AGGTTCTGGTTGCTTATTAA+AGG + chr4.3:1298479-1298498 None:intergenic 35.0%
!! ACTATTTCTAGAAGCTATCC+TGG + chr4.3:1297578-1297597 None:intergenic 35.0%
!! TCGTGGGAACAACTATTTTT+AGG - chr4.3:1298628-1298647 MS.gene95836:CDS 35.0%
!!! GGTTTTAGTTTTTCAGCAAC+AGG + chr4.3:1298436-1298455 None:intergenic 35.0%
!!! TTTAGTTTTTCAGCAACAGG+TGG + chr4.3:1298433-1298452 None:intergenic 35.0%
AACCTGAGGTTTCTACAGAT+GGG - chr4.3:1298494-1298513 MS.gene95836:intron 40.0%
AACTGTTAGTGACATGGAGA+TGG - chr4.3:1298702-1298721 MS.gene95836:CDS 40.0%
AAGCAGTAAATCATGGCCTT+TGG - chr4.3:1298101-1298120 MS.gene95836:intron 40.0%
AATCGAGACGGTAAAAATGC+AGG + chr4.3:1297860-1297879 None:intergenic 40.0%
ACAGACCAGTTTCTTCTGAT+GGG - chr4.3:1298389-1298408 MS.gene95836:intron 40.0%
AGATACTGATCGTGAAAACG+AGG - chr4.3:1298675-1298694 MS.gene95836:CDS 40.0%
ATCATCCCATCAGAAGAAAC+TGG + chr4.3:1298397-1298416 None:intergenic 40.0%
CAAAGGATTACGGTTCTCTA+TGG + chr4.3:1297716-1297735 None:intergenic 40.0%
CAACCCCTAAGTACTACTAA+TGG + chr4.3:1297328-1297347 None:intergenic 40.0%
CTTACAGTCATTGACAATCG+CGG + chr4.3:1297532-1297551 None:intergenic 40.0%
GATTCTCAACTTCTCTCCAA+AGG + chr4.3:1298120-1298139 None:intergenic 40.0%
GCTTACTCTCAGAAGATTCA+AGG + chr4.3:1298195-1298214 None:intergenic 40.0%
GGAAAATTGATGCAGATCAC+TGG - chr4.3:1297942-1297961 MS.gene95836:intron 40.0%
GGTTAATGAGGTCGGTAATT+GGG + chr4.3:1297206-1297225 None:intergenic 40.0%
GTTAATGAGGTCGGTAATTG+GGG + chr4.3:1297205-1297224 None:intergenic 40.0%
GTTGCATGTTGCTGTAGTAA+AGG + chr4.3:1297790-1297809 None:intergenic 40.0%
TAATAAGCAACCAGAACCTG+AGG - chr4.3:1298480-1298499 MS.gene95836:intron 40.0%
TCAGCAGCATCAAAGGATTA+CGG + chr4.3:1297726-1297745 None:intergenic 40.0%
TCATTGACAATCGCGGAAAA+TGG + chr4.3:1297525-1297544 None:intergenic 40.0%
TCTAGAAGCTATCCTGGTTA+CGG + chr4.3:1297572-1297591 None:intergenic 40.0%
TCTGGTTGCTTATTAAAGGC+AGG + chr4.3:1298475-1298494 None:intergenic 40.0%
TGTAGGTTCTTCTACTGAGT+GGG + chr4.3:1297818-1297837 None:intergenic 40.0%
TTAATGAGGTCGGTAATTGG+GGG + chr4.3:1297204-1297223 None:intergenic 40.0%
TTATTAAAGGCAGGAGATCG+TGG + chr4.3:1298466-1298485 None:intergenic 40.0%
TTGTAGGTTCTTCTACTGAG+TGG + chr4.3:1297819-1297838 None:intergenic 40.0%
! AAGAAACTGGTCTGTCATCT+TGG + chr4.3:1298384-1298403 None:intergenic 40.0%
AACCCATCTGTAGAAACCTC+AGG + chr4.3:1298499-1298518 None:intergenic 45.0%
AGTGTATCGCAGAACAACAG+TGG + chr4.3:1297453-1297472 None:intergenic 45.0%
GAACCTGAGGTTTCTACAGA+TGG - chr4.3:1298493-1298512 MS.gene95836:intron 45.0%
GACAGACCAGTTTCTTCTGA+TGG - chr4.3:1298388-1298407 MS.gene95836:intron 45.0%
GAGTGAGAATTGATCAGCGT+TGG + chr4.3:1297050-1297069 None:intergenic 45.0%
GATGCTCTCATTCTTGGTCA+TGG - chr4.3:1298264-1298283 MS.gene95836:intron 45.0%
GATGCTTCTCCATTCCTTCA+AGG + chr4.3:1298237-1298256 None:intergenic 45.0%
GGAGCAAACTGTTAGTGACA+TGG - chr4.3:1298696-1298715 MS.gene95836:CDS 45.0%
GGGTTAATGAGGTCGGTAAT+TGG + chr4.3:1297207-1297226 None:intergenic 45.0%
GTACCTGATTTACCGGATGA+CGG - chr4.3:1298604-1298623 MS.gene95836:CDS 45.0%
GTCTGTCATCTTGGTTACCT+TGG + chr4.3:1298375-1298394 None:intergenic 45.0%
TCTGTAGAAACCTCAGGTTC+TGG + chr4.3:1298493-1298512 None:intergenic 45.0%
TTCAGCTTACTTCCGTAACC+AGG - chr4.3:1297557-1297576 MS.gene95836:CDS 45.0%
TTGACAATCGCGGAAAATGG+CGG + chr4.3:1297522-1297541 None:intergenic 45.0%
! CAACCGATTCCATCATCTCT+TGG - chr4.3:1296993-1297012 MS.gene95836:CDS 45.0%
! GGTTCATCGCGATTGTCTTT+TGG + chr4.3:1298073-1298092 None:intergenic 45.0%
! TCATCGCGATTGTCTTTTGG+CGG + chr4.3:1298070-1298089 None:intergenic 45.0%
!! AATTGGCGTTTCTCTGAAGC+AGG - chr4.3:1298337-1298356 MS.gene95836:intron 45.0%
!! ATTGGCGTTTCTCTGAAGCA+GGG - chr4.3:1298338-1298357 MS.gene95836:intron 45.0%
!! CTCTGAAGCAGGGAATATGT+GGG - chr4.3:1298348-1298367 MS.gene95836:intron 45.0%
!! GAGATGATGGAATCGGTTGA+AGG + chr4.3:1296992-1297011 None:intergenic 45.0%
!! GGACCAAGAGATGATGGAAT+CGG + chr4.3:1296999-1297018 None:intergenic 45.0%
!! TCTCTGAAGCAGGGAATATG+TGG - chr4.3:1298347-1298366 MS.gene95836:intron 45.0%
!! ATACTATATTATATTATTAA+TGG - chr4.3:1297251-1297270 MS.gene95836:CDS 5.0%
!! TACTATATTATATTATTAAT+GGG - chr4.3:1297252-1297271 MS.gene95836:CDS 5.0%
AAAAACCCTCACGCAGGAGT+TGG - chr4.3:1298153-1298172 MS.gene95836:intron 50.0%
AGCAGCTGAACCAAGAATCC+AGG + chr4.3:1298301-1298320 None:intergenic 50.0%
ATCAGCGGACCAAGAGATGA+TGG + chr4.3:1297005-1297024 None:intergenic 50.0%
ATCATCTCTTGGTCCGCTGA+TGG - chr4.3:1297004-1297023 MS.gene95836:CDS 50.0%
CTACTGAGTGATCGCCTTGA+AGG - chr4.3:1298220-1298239 MS.gene95836:intron 50.0%
GAACCGTCATCCGGTAAATC+AGG + chr4.3:1298610-1298629 None:intergenic 50.0%
GAGTGATCGCCTTGAAGGAA+TGG - chr4.3:1298225-1298244 MS.gene95836:intron 50.0%
GCAGCAGATGCTCTCATTCT+TGG - chr4.3:1298258-1298277 MS.gene95836:intron 50.0%
GCAGCTGAACCAAGAATCCA+GGG + chr4.3:1298300-1298319 None:intergenic 50.0%
GGATAGAAAAACCCTCACGC+AGG - chr4.3:1298147-1298166 MS.gene95836:intron 50.0%
TCGGCATAAGCTCTCCCAAA+CGG + chr4.3:1297419-1297438 None:intergenic 50.0%
TCTCCCAAACGGTCTCAGAA+GGG + chr4.3:1297408-1297427 None:intergenic 50.0%
TGCTGATCTGCAGCAACATG+TGG + chr4.3:1298037-1298056 None:intergenic 50.0%
TTTGACCAACTCCTGCGTGA+GGG + chr4.3:1298161-1298180 None:intergenic 50.0%
! ATTTACCGGATGACGGTTCG+TGG - chr4.3:1298611-1298630 MS.gene95836:CDS 50.0%
! CGATTGTCTTTTGGCGGCAA+TGG + chr4.3:1298064-1298083 None:intergenic 50.0%
! GTTGAGTTGTCTGACGAAGC+TGG + chr4.3:1297110-1297129 None:intergenic 50.0%
! TTTACCGGATGACGGTTCGT+GGG - chr4.3:1298612-1298631 MS.gene95836:CDS 50.0%
!! AAGCCCTTCTGAGACCGTTT+GGG - chr4.3:1297402-1297421 MS.gene95836:CDS 50.0%
!! TAAGCCCTTCTGAGACCGTT+TGG - chr4.3:1297401-1297420 MS.gene95836:CDS 50.0%
CGTGCAATGCCCTGGATTCT+TGG - chr4.3:1298288-1298307 MS.gene95836:intron 55.0%
CTCTCCCAAACGGTCTCAGA+AGG + chr4.3:1297409-1297428 None:intergenic 55.0%
GAGGTCGGTAATTGGGGGAA+AGG + chr4.3:1297199-1297218 None:intergenic 55.0%
GCAGGAGATCGTGGAACAAC+AGG + chr4.3:1298457-1298476 None:intergenic 55.0%
GCAGGGAATATGTGGGACCA+AGG - chr4.3:1298355-1298374 MS.gene95836:intron 55.0%
GGTTCAGCTGCTTCACCCTA+AGG - chr4.3:1298309-1298328 MS.gene95836:intron 55.0%
GTTTGACCAACTCCTGCGTG+AGG + chr4.3:1298162-1298181 None:intergenic 55.0%
TGTTCCCACGAACCGTCATC+CGG + chr4.3:1298619-1298638 None:intergenic 55.0%
!! CGAGAAGGGTGGTTCTGGTT+CGG - chr4.3:1296925-1296944 MS.gene95836:CDS 55.0%
AGCAGCAACAGCGAGCGAGA+AGG - chr4.3:1296910-1296929 MS.gene95836:CDS 60.0%
GCAGCAACAGCGAGCGAGAA+GGG - chr4.3:1296911-1296930 MS.gene95836:CDS 60.0%
GTCATGGTCGTGCAATGCCC+TGG - chr4.3:1298280-1298299 MS.gene95836:intron 60.0%
!! GAAGGGTGGTTCTGGTTCGG+TGG - chr4.3:1296928-1296947 MS.gene95836:CDS 60.0%
GCAACAGCGAGCGAGAAGGG+TGG - chr4.3:1296914-1296933 MS.gene95836:CDS 65.0%
GCGAGCGAGAAGGGTGGTTC+TGG - chr4.3:1296920-1296939 MS.gene95836:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 1296902 1298804 1296902 ID=MS.gene95836
chr4.3 mRNA 1296902 1298804 1296902 ID=MS.gene95836.t1;Parent=MS.gene95836
chr4.3 exon 1298571 1298804 1298571 ID=MS.gene95836.t1.exon1;Parent=MS.gene95836.t1
chr4.3 CDS 1298571 1298804 1298571 ID=cds.MS.gene95836.t1;Parent=MS.gene95836.t1
chr4.3 exon 1296902 1297771 1296902 ID=MS.gene95836.t1.exon2;Parent=MS.gene95836.t1
chr4.3 CDS 1296902 1297771 1296902 ID=cds.MS.gene95836.t1;Parent=MS.gene95836.t1
Gene Sequence

>MS.gene95836

ATGGTGAAAGCAGCAACAGCGAGCGAGAAGGGTGGTTCTGGTTCGGTGGCACCTTTCTTGAATAAATGTTACGATATGGTTGAAGATCCTTCAACCGATTCCATCATCTCTTGGTCCGCTGATGGTAACAATAGTTTCATCATCTCCAACGCTGATCAATTCTCACTCACTCTTCTCCCCAATTATTTCAAACACAATAATTTCTCCAGCTTCGTCAGACAACTCAACATCTATGTATGCTCTTCTTATTCATCCCTTCAATTATTAATTCATATGTTCATTAATTTCTCTGTTCCTTTCCCCCAATTACCGACCTCATTAACCCTATATCAGTTTGTGTTTAAATACTATACTATATTATATTATTAATGGGTAAAGGTATTCTGTTTCCTTGATTTATATAGTACTATGTAGGTATAAAATCCATTAGTAGTACTTAGGGGTTGCATTTTACTTCTACGACACTTTTTTGGATTATTTGAGTTTATATGTTGACATATAAGCCCTTCTGAGACCGTTTGGGAGAGCTTATGCCGAATTTGAACAGACCACTGTTGTTCTGCGATACACTATTTAGTACATACTGCTGTCAAATAACAGCTATAGAACTTGAACAACCGCCATTTTCCGCGATTGTCAATGACTGTAAGCTGTTTTCAGCTTACTTCCGTAACCAGGATAGCTTCTAGAAATAGTTTATAGTTTATACCAAAACACTTTGACTATTTTATTTTTTGTTTTAGAGATAGCTTATATATAAACTGTTATCTTACAAGTGTTTATGCTATAAGTGCCTGATTAACTTGTTTATCCATAGAGAACCGTAATCCTTTGATGCTGCTGAATTGAAAATGTATTAGATAATATACTCGACCTTTTGAGAAACCTTTACTACAGCAACATGCAACGTTTTCCCACTCAGTAGAAGAACCTACAATAATTTTGTTTATCTAGGCCTGCATTTTTACCGTCTCGATTTGTTTAAAGTGTCTCTCTTTTAAAGTCAGCAACTGATGACTGTTGAATTTATCAGGGTTTCAGGAAAATTGATGCAGATCACTGGGAATTTGCAAATGAAAACTTCATTAGGGGTCAAAAGCATTTGCTGAAGAATATACGTAGAAGGAAACATCCACATGTTGCTGCAGATCAGCAAAAACCATTGCCGCCAAAAGACAATCGCGATGAACCATCACAAGAAGCAGTAAATCATGGCCTTTGGAGAGAAGTTGAGAATCTAAAATCGGATAGAAAAACCCTCACGCAGGAGTTGGTCAAACATAAGCAGCACCTTGAATCTTCTGAGAGTAAGCTGCTTCTACTGAGTGATCGCCTTGAAGGAATGGAGAAGCATCAGCAGCAGATGCTCTCATTCTTGGTCATGGTCGTGCAATGCCCTGGATTCTTGGTTCAGCTGCTTCACCCTAAGGAAAATAATTGGCGTTTCTCTGAAGCAGGGAATATGTGGGACCAAGGTAACCAAGATGACAGACCAGTTTCTTCTGATGGGATGATTATAAAGTATACACCACCTGTTGCTGAAAAACTAAAACCTGTTGTTCCACGATCTCCTGCCTTTAATAAGCAACCAGAACCTGAGGTTTCTACAGATGGGTTAAAAGACTTGTGCATCAGTTCTGAGTTCTTGAAATTGCTTCTAGATGAGAAATTGTGCCCATTAGATAATCATTCTCCGTTTCTTGTACCTGATTTACCGGATGACGGTTCGTGGGAACAACTATTTTTAGGCAGTCCTATCCTAAAAAATGTTGAAGATACTGATCGTGAAAACGAGGAGCAAACTGTTAGTGACATGGAGATGGATCACATCATATCTGAAGCTCTAAATGAAACATCTGATTTTGAAGCGATGATTATGGAAATGGAGAACACTCACGCATGA
Protein sequence

>MS.gene95836.t1

MVKAATASEKGGSGSVAPFLNKCYDMVEDPSTDSIISWSADGNNSFIISNADQFSLTLLPNYFKHNNFSSFVRQLNIYGFRKIDADHWEFANENFIRGQKHLLKNIRRRKHPHVAADQQKPLPPKDNRDEPSQEAVNHGLWREVENLKSDRKTLTQELVKHKQHLESSESKLLLLSDRLEGMEKHQQQMLSFLVMVVQCPGFLVQLLHPKENNWRFSEAGNMWDQGNQDDRPVSSDGMIIKYTPPVAEKLKPVVPRSPAFNKQPEPEVSTDGLKDLCISSEFLKLLLDEKLCPLDNHSPFLVPDLPDDGSWEQLFLGSPILKNVEDTDRENEEQTVSDMEMDHIISEALNETSDFEAMIMEMENTHA