Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058589.t1 | XP_024629287.1 | 97.6 | 371 | 5 | 1 | 1 | 367 | 1 | 371 | 2.00E-204 | 721.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058589.t1 | Q9S7U5 | 46.8 | 299 | 133 | 5 | 17 | 314 | 18 | 291 | 1.9e-65 | 251.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058589.t1 | G7LBG8 | 97.6 | 371 | 5 | 1 | 1 | 367 | 1 | 371 | 1.5e-204 | 721.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene058589.t1 | TF | HSF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058589 | MS.gene62673 | 0.937297 | 4.36E-98 | -1.69E-46 |
| MS.gene058589 | MS.gene95836 | 0.942483 | 6.63E-102 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058589.t1 | MTR_8g105780 | 97.574 | 371 | 5 | 1 | 1 | 367 | 1 | 371 | 0.0 | 744 |
| MS.gene058589.t1 | MTR_5g029680 | 46.125 | 271 | 128 | 6 | 18 | 272 | 32 | 300 | 3.60e-67 | 220 |
| MS.gene058589.t1 | MTR_4g077970 | 43.284 | 268 | 144 | 3 | 18 | 278 | 12 | 278 | 1.22e-66 | 219 |
| MS.gene058589.t1 | MTR_1g102860 | 50.000 | 198 | 89 | 4 | 18 | 215 | 40 | 227 | 6.94e-56 | 186 |
| MS.gene058589.t1 | MTR_7g095680 | 48.454 | 194 | 96 | 2 | 18 | 211 | 49 | 238 | 1.64e-53 | 181 |
| MS.gene058589.t1 | MTR_8g087540 | 45.771 | 201 | 98 | 3 | 9 | 207 | 3 | 194 | 3.39e-50 | 173 |
| MS.gene058589.t1 | MTR_3g104550 | 45.876 | 194 | 98 | 2 | 18 | 211 | 46 | 232 | 5.43e-50 | 172 |
| MS.gene058589.t1 | MTR_6g043060 | 46.860 | 207 | 95 | 7 | 4 | 210 | 10 | 201 | 1.59e-48 | 167 |
| MS.gene058589.t1 | MTR_1g061170 | 41.739 | 230 | 124 | 4 | 16 | 244 | 47 | 267 | 4.80e-48 | 169 |
| MS.gene058589.t1 | MTR_1g071360 | 45.699 | 186 | 83 | 3 | 18 | 203 | 32 | 199 | 4.75e-47 | 163 |
| MS.gene058589.t1 | MTR_1g071360 | 45.699 | 186 | 83 | 3 | 18 | 203 | 29 | 196 | 9.89e-47 | 163 |
| MS.gene058589.t1 | MTR_6g086805 | 46.193 | 197 | 95 | 4 | 16 | 212 | 9 | 194 | 2.31e-45 | 159 |
| MS.gene058589.t1 | MTR_2g100680 | 44.554 | 202 | 99 | 5 | 7 | 206 | 18 | 208 | 6.03e-45 | 160 |
| MS.gene058589.t1 | MTR_2g017890 | 45.226 | 199 | 95 | 4 | 9 | 201 | 4 | 194 | 1.00e-44 | 158 |
| MS.gene058589.t1 | MTR_8g083100 | 47.917 | 192 | 87 | 6 | 19 | 210 | 23 | 201 | 1.00e-44 | 160 |
| MS.gene058589.t1 | MTR_2g100670 | 44.500 | 200 | 98 | 5 | 4 | 203 | 21 | 207 | 2.02e-44 | 155 |
| MS.gene058589.t1 | MTR_2g100670 | 44.500 | 200 | 98 | 5 | 4 | 203 | 129 | 315 | 1.78e-43 | 155 |
| MS.gene058589.t1 | MTR_5g017470 | 42.373 | 177 | 74 | 2 | 17 | 166 | 8 | 183 | 1.12e-33 | 126 |
| MS.gene058589.t1 | MTR_5g089170 | 60.417 | 96 | 37 | 1 | 17 | 112 | 24 | 118 | 2.59e-33 | 124 |
| MS.gene058589.t1 | MTR_3g101870 | 62.766 | 94 | 34 | 1 | 17 | 110 | 23 | 115 | 2.63e-33 | 127 |
| MS.gene058589.t1 | MTR_5g010680 | 59.574 | 94 | 37 | 1 | 17 | 110 | 23 | 115 | 4.28e-33 | 126 |
| MS.gene058589.t1 | MTR_0020s0020 | 60.638 | 94 | 36 | 1 | 17 | 110 | 32 | 124 | 4.39e-32 | 123 |
| MS.gene058589.t1 | MTR_7g091370 | 51.961 | 102 | 48 | 1 | 9 | 110 | 13 | 113 | 1.04e-30 | 117 |
| MS.gene058589.t1 | MTR_1g100777 | 57.447 | 94 | 39 | 1 | 17 | 110 | 17 | 109 | 1.94e-30 | 118 |
| MS.gene058589.t1 | MTR_4g088900 | 40.645 | 155 | 82 | 5 | 17 | 162 | 32 | 185 | 1.86e-26 | 105 |
| MS.gene058589.t1 | MTR_5g047190 | 53.684 | 95 | 36 | 3 | 26 | 113 | 1 | 94 | 1.50e-21 | 88.6 |
| MS.gene058589.t1 | MTR_1g061170 | 35.928 | 167 | 98 | 3 | 79 | 244 | 14 | 172 | 4.80e-21 | 93.6 |
| MS.gene058589.t1 | MTR_4g045757 | 57.377 | 61 | 25 | 1 | 16 | 76 | 12 | 71 | 4.40e-14 | 67.4 |
| MS.gene058589.t1 | MTR_6g044340 | 32.857 | 140 | 82 | 4 | 71 | 210 | 14 | 141 | 1.13e-11 | 64.7 |
| MS.gene058589.t1 | MTR_2g043940 | 29.677 | 155 | 86 | 2 | 71 | 215 | 14 | 155 | 2.69e-11 | 64.7 |
| MS.gene058589.t1 | MTR_4g077970 | 33.333 | 105 | 63 | 2 | 156 | 253 | 2 | 106 | 6.62e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058589.t1 | AT1G67970 | 43.978 | 357 | 159 | 6 | 16 | 356 | 17 | 348 | 2.03e-90 | 276 |
| MS.gene058589.t1 | AT1G32330 | 46.400 | 250 | 122 | 4 | 13 | 251 | 32 | 280 | 2.33e-63 | 210 |
| MS.gene058589.t1 | AT1G32330 | 46.400 | 250 | 122 | 4 | 13 | 251 | 32 | 280 | 2.39e-63 | 210 |
| MS.gene058589.t1 | AT5G16820 | 46.281 | 242 | 120 | 4 | 15 | 248 | 24 | 263 | 6.28e-60 | 201 |
| MS.gene058589.t1 | AT5G16820 | 46.281 | 242 | 120 | 4 | 15 | 248 | 24 | 263 | 6.28e-60 | 201 |
| MS.gene058589.t1 | AT4G17750 | 46.748 | 246 | 111 | 5 | 18 | 244 | 52 | 296 | 2.25e-59 | 199 |
| MS.gene058589.t1 | AT2G26150 | 49.206 | 189 | 89 | 2 | 18 | 206 | 44 | 225 | 9.72e-56 | 186 |
| MS.gene058589.t1 | AT2G26150 | 49.206 | 189 | 89 | 2 | 18 | 206 | 44 | 225 | 9.72e-56 | 186 |
| MS.gene058589.t1 | AT3G22830 | 48.768 | 203 | 102 | 2 | 18 | 219 | 61 | 262 | 9.82e-56 | 188 |
| MS.gene058589.t1 | AT3G02990 | 45.652 | 230 | 95 | 4 | 4 | 219 | 9 | 222 | 1.71e-55 | 189 |
| MS.gene058589.t1 | AT3G51910 | 43.814 | 194 | 87 | 4 | 18 | 211 | 29 | 200 | 7.61e-50 | 169 |
| MS.gene058589.t1 | AT5G03720 | 43.455 | 191 | 99 | 3 | 16 | 206 | 53 | 234 | 2.87e-47 | 166 |
| MS.gene058589.t1 | AT5G03720 | 43.455 | 191 | 99 | 3 | 16 | 206 | 53 | 234 | 2.87e-47 | 166 |
| MS.gene058589.t1 | AT5G43840 | 44.211 | 190 | 85 | 2 | 17 | 206 | 18 | 186 | 2.00e-46 | 160 |
| MS.gene058589.t1 | AT3G24520 | 43.939 | 198 | 81 | 3 | 16 | 213 | 15 | 182 | 3.19e-46 | 160 |
| MS.gene058589.t1 | AT4G13980 | 45.000 | 200 | 99 | 4 | 4 | 203 | 9 | 197 | 2.40e-44 | 159 |
| MS.gene058589.t1 | AT5G45710 | 41.981 | 212 | 108 | 3 | 11 | 218 | 6 | 206 | 3.14e-44 | 156 |
| MS.gene058589.t1 | AT5G45710 | 41.981 | 212 | 108 | 3 | 11 | 218 | 6 | 206 | 3.14e-44 | 156 |
| MS.gene058589.t1 | AT3G63350 | 40.284 | 211 | 111 | 4 | 17 | 227 | 27 | 222 | 6.99e-43 | 150 |
| MS.gene058589.t1 | AT5G54070 | 40.404 | 198 | 102 | 2 | 14 | 211 | 67 | 248 | 1.27e-42 | 151 |
| MS.gene058589.t1 | AT4G18880 | 45.685 | 197 | 97 | 4 | 12 | 206 | 9 | 197 | 1.25e-39 | 145 |
| MS.gene058589.t1 | AT1G46264 | 55.263 | 114 | 50 | 1 | 9 | 122 | 25 | 137 | 4.54e-36 | 134 |
| MS.gene058589.t1 | AT4G11660 | 59.574 | 94 | 37 | 1 | 17 | 110 | 58 | 150 | 5.01e-32 | 124 |
| MS.gene058589.t1 | AT5G62020 | 53.636 | 110 | 49 | 2 | 2 | 110 | 6 | 114 | 2.77e-31 | 120 |
| MS.gene058589.t1 | AT4G36990 | 57.447 | 94 | 39 | 1 | 17 | 110 | 13 | 105 | 3.04e-31 | 120 |
| MS.gene058589.t1 | AT2G41690 | 53.211 | 109 | 44 | 2 | 11 | 113 | 27 | 134 | 4.72e-31 | 118 |
| MS.gene058589.t1 | AT2G26150 | 42.308 | 130 | 69 | 1 | 77 | 206 | 47 | 170 | 3.48e-23 | 98.2 |
| MS.gene058589.t1 | AT2G26150 | 42.308 | 130 | 69 | 1 | 77 | 206 | 47 | 170 | 3.48e-23 | 98.2 |
| MS.gene058589.t1 | AT4G18870 | 49.000 | 100 | 49 | 2 | 7 | 106 | 2 | 99 | 6.89e-21 | 92.0 |
| MS.gene058589.t1 | AT4G18870 | 42.276 | 123 | 61 | 3 | 15 | 135 | 143 | 257 | 3.68e-20 | 89.7 |
| MS.gene058589.t1 | AT4G19630 | 36.842 | 95 | 56 | 2 | 15 | 106 | 8 | 101 | 1.27e-12 | 64.7 |
| MS.gene058589.t1 | AT1G77570 | 39.583 | 96 | 54 | 3 | 14 | 106 | 22 | 116 | 9.67e-12 | 62.8 |
Find 79 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTATTGTGTTTGAAATAAT+TGG | 0.094053 | 4.4:-1484013 | None:intergenic |
| GTTGAATTTATCAGGGTTTC+AGG | 0.157083 | 4.4:+1484868 | MS.gene058589:intron |
| AGGTTCTGGTTGCTTATTAA+AGG | 0.234573 | 4.4:-1485423 | None:intergenic |
| TTGCAAATGAAAACTTCATT+AGG | 0.259058 | 4.4:+1484916 | MS.gene058589:CDS |
| GGTTCATCGCGATTGTCTTT+TGG | 0.270022 | 4.4:-1485017 | None:intergenic |
| TGCAAATGAAAACTTCATTA+GGG | 0.270385 | 4.4:+1484917 | MS.gene058589:CDS |
| CTTGAATAAATGTTACGATA+TGG | 0.302015 | 4.4:+1483891 | MS.gene058589:CDS |
| CGTGCAATGCCCTGGATTCT+TGG | 0.305963 | 4.4:+1485235 | MS.gene058589:CDS |
| TTATTGTGTTTGAAATAATT+GGG | 0.306935 | 4.4:-1484012 | None:intergenic |
| GCAGCAGATGCTCTCATTCT+TGG | 0.308364 | 4.4:+1485205 | MS.gene058589:CDS |
| TTCACCCTAAGGAAAATAAT+TGG | 0.343688 | 4.4:+1485267 | MS.gene058589:CDS |
| GTTTCTTGTACCTGATTTAC+CGG | 0.350562 | 4.4:+1485544 | MS.gene058589:CDS |
| AACGGAGAATGATTATCTAA+TGG | 0.359885 | 4.4:-1485524 | None:intergenic |
| GCGAGCGAGAAGGGTGGTTC+TGG | 0.371236 | 4.4:+1483853 | MS.gene058589:CDS |
| TGAAGCGATGATTATGGAAA+TGG | 0.375364 | 4.4:+1485712 | MS.gene058589:CDS |
| CAACCGATTCCATCATCTCT+TGG | 0.401097 | 4.4:+1483926 | MS.gene058589:CDS |
| CTACTGAGTGATCGCCTTGA+AGG | 0.403981 | 4.4:+1485167 | MS.gene058589:CDS |
| GATGCTTCTCCATTCCTTCA+AGG | 0.410224 | 4.4:-1485181 | None:intergenic |
| TGATTTACTGCTTCTTGTGA+TGG | 0.416635 | 4.4:-1485038 | None:intergenic |
| GGAAAATTGATGCAGATCAC+TGG | 0.420160 | 4.4:+1484889 | MS.gene058589:CDS |
| TGCTGAAGAATATACGTAGA+AGG | 0.420862 | 4.4:+1484952 | MS.gene058589:CDS |
| GTCTGTCATCTTGGTTACCT+TGG | 0.422781 | 4.4:-1485319 | None:intergenic |
| GAACCGTCATCCGGTAAATC+AGG | 0.426775 | 4.4:-1485554 | None:intergenic |
| ACGGAGAATGATTATCTAAT+GGG | 0.429612 | 4.4:-1485523 | None:intergenic |
| GCAGGAGATCGTGGAACAAC+AGG | 0.434299 | 4.4:-1485401 | None:intergenic |
| TCTGTAGAAACCTCAGGTTC+TGG | 0.439677 | 4.4:-1485437 | None:intergenic |
| AAGCAGTAAATCATGGCCTT+TGG | 0.439818 | 4.4:+1485048 | MS.gene058589:CDS |
| ATCATCCCATCAGAAGAAAC+TGG | 0.445617 | 4.4:-1485341 | None:intergenic |
| AAGAAACTGGTCTGTCATCT+TGG | 0.448044 | 4.4:-1485328 | None:intergenic |
| AGAAGTTGAGAATCTAAAAT+CGG | 0.450572 | 4.4:+1485073 | MS.gene058589:CDS |
| GAACCTGAGGTTTCTACAGA+TGG | 0.463364 | 4.4:+1485440 | MS.gene058589:CDS |
| AATTGGCGTTTCTCTGAAGC+AGG | 0.464691 | 4.4:+1485284 | MS.gene058589:CDS |
| CGAGAAGGGTGGTTCTGGTT+CGG | 0.469624 | 4.4:+1483858 | MS.gene058589:CDS |
| GCAGCAACAGCGAGCGAGAA+GGG | 0.473861 | 4.4:+1483844 | MS.gene058589:CDS |
| AACCCATCTGTAGAAACCTC+AGG | 0.474952 | 4.4:-1485443 | None:intergenic |
| TGTTCCCACGAACCGTCATC+CGG | 0.475845 | 4.4:-1485563 | None:intergenic |
| GGTTCAGCTGCTTCACCCTA+AGG | 0.476383 | 4.4:+1485256 | MS.gene058589:CDS |
| TCGTAACATTTATTCAAGAA+AGG | 0.477793 | 4.4:-1483886 | None:intergenic |
| GCTTACTCTCAGAAGATTCA+AGG | 0.482301 | 4.4:-1485139 | None:intergenic |
| AGCAGCTGAACCAAGAATCC+AGG | 0.483387 | 4.4:-1485245 | None:intergenic |
| ATTTACCGGATGACGGTTCG+TGG | 0.488372 | 4.4:+1485558 | MS.gene058589:CDS |
| GAGTGATCGCCTTGAAGGAA+TGG | 0.496645 | 4.4:+1485172 | MS.gene058589:CDS |
| TCTGGTTGCTTATTAAAGGC+AGG | 0.497515 | 4.4:-1485419 | None:intergenic |
| GTCATGGTCGTGCAATGCCC+TGG | 0.501216 | 4.4:+1485227 | MS.gene058589:CDS |
| GACAGACCAGTTTCTTCTGA+TGG | 0.504911 | 4.4:+1485335 | MS.gene058589:CDS |
| TCTCTGAAGCAGGGAATATG+TGG | 0.508698 | 4.4:+1485294 | MS.gene058589:CDS |
| GATTCTCAACTTCTCTCCAA+AGG | 0.510423 | 4.4:-1485064 | None:intergenic |
| TATTGTGTTTGAAATAATTG+GGG | 0.510469 | 4.4:-1484011 | None:intergenic |
| GATGCTCTCATTCTTGGTCA+TGG | 0.526629 | 4.4:+1485211 | MS.gene058589:CDS |
| GTTGAGTTGTCTGACGAAGC+TGG | 0.529603 | 4.4:-1484040 | None:intergenic |
| GAGATGATGGAATCGGTTGA+AGG | 0.531686 | 4.4:-1483922 | None:intergenic |
| ATCATCTCTTGGTCCGCTGA+TGG | 0.533246 | 4.4:+1483937 | MS.gene058589:CDS |
| ATCAGCGGACCAAGAGATGA+TGG | 0.535757 | 4.4:-1483935 | None:intergenic |
| GGTAAATCAGGTACAAGAAA+CGG | 0.535891 | 4.4:-1485542 | None:intergenic |
| GAGTGAGAATTGATCAGCGT+TGG | 0.547894 | 4.4:-1483980 | None:intergenic |
| GTACCTGATTTACCGGATGA+CGG | 0.554758 | 4.4:+1485551 | MS.gene058589:CDS |
| AACTGTTAGTGACATGGAGA+TGG | 0.556871 | 4.4:+1485649 | MS.gene058589:CDS |
| ACAGACCAGTTTCTTCTGAT+GGG | 0.557728 | 4.4:+1485336 | MS.gene058589:CDS |
| GTTTGACCAACTCCTGCGTG+AGG | 0.558206 | 4.4:-1485106 | None:intergenic |
| GGACCAAGAGATGATGGAAT+CGG | 0.561010 | 4.4:-1483929 | None:intergenic |
| TTTACCGGATGACGGTTCGT+GGG | 0.565563 | 4.4:+1485559 | MS.gene058589:CDS |
| AGCAGCAACAGCGAGCGAGA+AGG | 0.566061 | 4.4:+1483843 | MS.gene058589:CDS |
| TCACAAGAAGCAGTAAATCA+TGG | 0.568437 | 4.4:+1485041 | MS.gene058589:CDS |
| TGCTGATCTGCAGCAACATG+TGG | 0.573167 | 4.4:-1484981 | None:intergenic |
| AACCTGAGGTTTCTACAGAT+GGG | 0.578276 | 4.4:+1485441 | MS.gene058589:CDS |
| TTTGACCAACTCCTGCGTGA+GGG | 0.583918 | 4.4:-1485105 | None:intergenic |
| GAAAATTGATGCAGATCACT+GGG | 0.584009 | 4.4:+1484890 | MS.gene058589:CDS |
| GCAAATGAAAACTTCATTAG+GGG | 0.585563 | 4.4:+1484918 | MS.gene058589:CDS |
| GAAGGGTGGTTCTGGTTCGG+TGG | 0.586874 | 4.4:+1483861 | MS.gene058589:CDS |
| TAATAAGCAACCAGAACCTG+AGG | 0.601561 | 4.4:+1485427 | MS.gene058589:CDS |
| GCAGCTGAACCAAGAATCCA+GGG | 0.614903 | 4.4:-1485244 | None:intergenic |
| TTATTAAAGGCAGGAGATCG+TGG | 0.635093 | 4.4:-1485410 | None:intergenic |
| CTCTGAAGCAGGGAATATGT+GGG | 0.641241 | 4.4:+1485295 | MS.gene058589:CDS |
| ATTGGCGTTTCTCTGAAGCA+GGG | 0.648668 | 4.4:+1485285 | MS.gene058589:CDS |
| GGAGCAAACTGTTAGTGACA+TGG | 0.649582 | 4.4:+1485643 | MS.gene058589:CDS |
| GCAGGGAATATGTGGGACCA+AGG | 0.652641 | 4.4:+1485302 | MS.gene058589:CDS |
| GCAACAGCGAGCGAGAAGGG+TGG | 0.652707 | 4.4:+1483847 | MS.gene058589:CDS |
| GAAACTATTGTTACCATCAG+CGG | 0.656676 | 4.4:-1483950 | None:intergenic |
| AGATACTGATAGTGAAAACG+AGG | 0.696439 | 4.4:+1485622 | MS.gene058589:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATCAGAATTAATAATTGA+AGG | - | chr4.4:1484092-1484111 | None:intergenic | 15.0% |
| !! | AATCAGAATTAATAATTGAA+GGG | - | chr4.4:1484091-1484110 | None:intergenic | 15.0% |
| !! | TAGATAAACAAAATTATTGT+AGG | - | chr4.4:1484782-1484801 | None:intergenic | 15.0% |
| !!! | ATTATATTATTAATGGGTAA+AGG | + | chr4.4:1484193-1484212 | MS.gene058589:intron | 15.0% |
| !!! | ATTATTGTGTTTGAAATAAT+TGG | - | chr4.4:1484016-1484035 | None:intergenic | 15.0% |
| !!! | TACAATAATTTTGTTTATCT+AGG | + | chr4.4:1484781-1484800 | MS.gene058589:intron | 15.0% |
| !!! | TTATTGTGTTTGAAATAATT+GGG | - | chr4.4:1484015-1484034 | None:intergenic | 15.0% |
| !! | ACATAGTACTATATAAATCA+AGG | - | chr4.4:1484229-1484248 | None:intergenic | 20.0% |
| !! | TATTTAAACAAACTGATGTA+GGG | - | chr4.4:1484164-1484183 | None:intergenic | 20.0% |
| !! | TGATTTATATAGTACTATGT+AGG | + | chr4.4:1484229-1484248 | MS.gene058589:intron | 20.0% |
| !!! | ATAAAATAGTCAAAGTGTTT+TGG | - | chr4.4:1484560-1484579 | None:intergenic | 20.0% |
| !!! | TATTGTGTTTGAAATAATTG+GGG | - | chr4.4:1484014-1484033 | None:intergenic | 20.0% |
| ! | CTTGAATAAATGTTACGATA+TGG | + | chr4.4:1483891-1483910 | MS.gene058589:CDS | 25.0% |
| ! | GTATTTAAACAAACTGATGT+AGG | - | chr4.4:1484165-1484184 | None:intergenic | 25.0% |
| ! | TATGGATAAACAAGTTAATC+AGG | - | chr4.4:1484645-1484664 | None:intergenic | 25.0% |
| ! | TCGTAACATTTATTCAAGAA+AGG | - | chr4.4:1483889-1483908 | None:intergenic | 25.0% |
| ! | TGCAAATGAAAACTTCATTA+GGG | + | chr4.4:1484917-1484936 | MS.gene058589:CDS | 25.0% |
| ! | TTGCAAATGAAAACTTCATT+AGG | + | chr4.4:1484916-1484935 | MS.gene058589:CDS | 25.0% |
| !! | AGAAGTTGAGAATCTAAAAT+CGG | + | chr4.4:1485073-1485092 | MS.gene058589:CDS | 25.0% |
| !!! | CAGTATCTTCAACATTTTTT+AGG | - | chr4.4:1485610-1485629 | None:intergenic | 25.0% |
| !!! | TCTTCAACATTTTTTAGGAT+AGG | - | chr4.4:1485605-1485624 | None:intergenic | 25.0% |
| !!! | TTTACTTCTAAGACACTTTT+TGG | + | chr4.4:1484286-1484305 | MS.gene058589:intron | 25.0% |
| AAAATCCATTAGCAGTACTT+AGG | + | chr4.4:1484255-1484274 | MS.gene058589:intron | 30.0% | |
| AAATCCATTAGCAGTACTTA+GGG | + | chr4.4:1484256-1484275 | MS.gene058589:intron | 30.0% | |
| AACGGAGAATGATTATCTAA+TGG | - | chr4.4:1485527-1485546 | None:intergenic | 30.0% | |
| ACACTTTAAACAAATCGAGA+CGG | - | chr4.4:1484819-1484838 | None:intergenic | 30.0% | |
| ACGGAGAATGATTATCTAAT+GGG | - | chr4.4:1485526-1485545 | None:intergenic | 30.0% | |
| GATGACTGTTGAATTTATCA+GGG | + | chr4.4:1484861-1484880 | MS.gene058589:intron | 30.0% | |
| GCAAATGAAAACTTCATTAG+GGG | + | chr4.4:1484918-1484937 | MS.gene058589:CDS | 30.0% | |
| GTCTGTTCAAACTTCAAATT+CGG | - | chr4.4:1484378-1484397 | None:intergenic | 30.0% | |
| TGATGACTGTTGAATTTATC+AGG | + | chr4.4:1484860-1484879 | MS.gene058589:intron | 30.0% | |
| TGTAGTAAAGGTTTCTCAAA+AGG | - | chr4.4:1484725-1484744 | None:intergenic | 30.0% | |
| TTCACCCTAAGGAAAATAAT+TGG | + | chr4.4:1485267-1485286 | MS.gene058589:CDS | 30.0% | |
| ! | AAACGCCAATTATTTTCCTT+AGG | - | chr4.4:1485275-1485294 | None:intergenic | 30.0% |
| ! | AACGCCAATTATTTTCCTTA+GGG | - | chr4.4:1485274-1485293 | None:intergenic | 30.0% |
| !!! | TGATTTTGAAGCGATGATTA+TGG | + | chr4.4:1485706-1485725 | MS.gene058589:CDS | 30.0% |
| GAAAATTGATGCAGATCACT+GGG | + | chr4.4:1484890-1484909 | MS.gene058589:CDS | 35.0% | |
| GAAACTATTGTTACCATCAG+CGG | - | chr4.4:1483953-1483972 | None:intergenic | 35.0% | |
| GGTAAATCAGGTACAAGAAA+CGG | - | chr4.4:1485545-1485564 | None:intergenic | 35.0% | |
| GGTTAATGAAGTCGGTAATT+GGG | - | chr4.4:1484143-1484162 | None:intergenic | 35.0% | |
| GTTAATGAAGTCGGTAATTG+GGG | - | chr4.4:1484142-1484161 | None:intergenic | 35.0% | |
| GTTGAATTTATCAGGGTTTC+AGG | + | chr4.4:1484868-1484887 | MS.gene058589:intron | 35.0% | |
| GTTTCTTGTACCTGATTTAC+CGG | + | chr4.4:1485544-1485563 | MS.gene058589:CDS | 35.0% | |
| TCACAAGAAGCAGTAAATCA+TGG | + | chr4.4:1485041-1485060 | MS.gene058589:CDS | 35.0% | |
| TGAAGCGATGATTATGGAAA+TGG | + | chr4.4:1485712-1485731 | MS.gene058589:CDS | 35.0% | |
| TGATGTAGGGTTAATGAAGT+CGG | - | chr4.4:1484151-1484170 | None:intergenic | 35.0% | |
| TGATTTACTGCTTCTTGTGA+TGG | - | chr4.4:1485041-1485060 | None:intergenic | 35.0% | |
| TGCTGAAGAATATACGTAGA+AGG | + | chr4.4:1484952-1484971 | MS.gene058589:CDS | 35.0% | |
| TTAATGAAGTCGGTAATTGG+GGG | - | chr4.4:1484141-1484160 | None:intergenic | 35.0% | |
| TTTCAATTCAGCAGCATCAA+AGG | - | chr4.4:1484680-1484699 | None:intergenic | 35.0% | |
| ! | AGATACTGATAGTGAAAACG+AGG | + | chr4.4:1485622-1485641 | MS.gene058589:CDS | 35.0% |
| ! | AGGTTCTGGTTGCTTATTAA+AGG | - | chr4.4:1485426-1485445 | None:intergenic | 35.0% |
| !! | ACTATTTCTAGAAGCTATCC+TGG | - | chr4.4:1484525-1484544 | None:intergenic | 35.0% |
| !! | TCGTGGGAACAACTATTTTT+AGG | + | chr4.4:1485575-1485594 | MS.gene058589:CDS | 35.0% |
| !!! | GGTTTTAGTTTTTCAGCAAC+AGG | - | chr4.4:1485383-1485402 | None:intergenic | 35.0% |
| !!! | TTTAGTTTTTCAGCAACAGG+TGG | - | chr4.4:1485380-1485399 | None:intergenic | 35.0% |
| AACCTGAGGTTTCTACAGAT+GGG | + | chr4.4:1485441-1485460 | MS.gene058589:CDS | 40.0% | |
| AACTGTTAGTGACATGGAGA+TGG | + | chr4.4:1485649-1485668 | MS.gene058589:CDS | 40.0% | |
| AAGCAGTAAATCATGGCCTT+TGG | + | chr4.4:1485048-1485067 | MS.gene058589:CDS | 40.0% | |
| AATCGAGACGGTAAAAATGC+AGG | - | chr4.4:1484807-1484826 | None:intergenic | 40.0% | |
| ACAGACCAGTTTCTTCTGAT+GGG | + | chr4.4:1485336-1485355 | MS.gene058589:CDS | 40.0% | |
| ATCATCCCATCAGAAGAAAC+TGG | - | chr4.4:1485344-1485363 | None:intergenic | 40.0% | |
| CAAAGGATTACGGTTCTCTA+TGG | - | chr4.4:1484663-1484682 | None:intergenic | 40.0% | |
| CTTACAGTCATTGACAATCG+CGG | - | chr4.4:1484479-1484498 | None:intergenic | 40.0% | |
| GATTCTCAACTTCTCTCCAA+AGG | - | chr4.4:1485067-1485086 | None:intergenic | 40.0% | |
| GCTTACTCTCAGAAGATTCA+AGG | - | chr4.4:1485142-1485161 | None:intergenic | 40.0% | |
| GGAAAATTGATGCAGATCAC+TGG | + | chr4.4:1484889-1484908 | MS.gene058589:CDS | 40.0% | |
| GGGTTAATGAAGTCGGTAAT+TGG | - | chr4.4:1484144-1484163 | None:intergenic | 40.0% | |
| GTTGCATGTTGCTGTAGTAA+AGG | - | chr4.4:1484737-1484756 | None:intergenic | 40.0% | |
| TAATAAGCAACCAGAACCTG+AGG | + | chr4.4:1485427-1485446 | MS.gene058589:CDS | 40.0% | |
| TCAGCAGCATCAAAGGATTA+CGG | - | chr4.4:1484673-1484692 | None:intergenic | 40.0% | |
| TCATTGACAATCGCGGAAAA+TGG | - | chr4.4:1484472-1484491 | None:intergenic | 40.0% | |
| TCTAGAAGCTATCCTGGTTA+CGG | - | chr4.4:1484519-1484538 | None:intergenic | 40.0% | |
| TCTGGTTGCTTATTAAAGGC+AGG | - | chr4.4:1485422-1485441 | None:intergenic | 40.0% | |
| TGTAGGTTCTTCTACTGAGT+GGG | - | chr4.4:1484765-1484784 | None:intergenic | 40.0% | |
| TTATTAAAGGCAGGAGATCG+TGG | - | chr4.4:1485413-1485432 | None:intergenic | 40.0% | |
| TTGTAGGTTCTTCTACTGAG+TGG | - | chr4.4:1484766-1484785 | None:intergenic | 40.0% | |
| ! | AAGAAACTGGTCTGTCATCT+TGG | - | chr4.4:1485331-1485350 | None:intergenic | 40.0% |
| ! | CAAACCCTAAGTACTGCTAA+TGG | - | chr4.4:1484263-1484282 | None:intergenic | 40.0% |
| AACCCATCTGTAGAAACCTC+AGG | - | chr4.4:1485446-1485465 | None:intergenic | 45.0% | |
| AGTGTATCGCAGAACAACAG+TGG | - | chr4.4:1484400-1484419 | None:intergenic | 45.0% | |
| GAACCTGAGGTTTCTACAGA+TGG | + | chr4.4:1485440-1485459 | MS.gene058589:CDS | 45.0% | |
| GACAGACCAGTTTCTTCTGA+TGG | + | chr4.4:1485335-1485354 | MS.gene058589:CDS | 45.0% | |
| GAGTGAGAATTGATCAGCGT+TGG | - | chr4.4:1483983-1484002 | None:intergenic | 45.0% | |
| GATGCTCTCATTCTTGGTCA+TGG | + | chr4.4:1485211-1485230 | MS.gene058589:CDS | 45.0% | |
| GATGCTTCTCCATTCCTTCA+AGG | - | chr4.4:1485184-1485203 | None:intergenic | 45.0% | |
| GGAGCAAACTGTTAGTGACA+TGG | + | chr4.4:1485643-1485662 | MS.gene058589:CDS | 45.0% | |
| GTACCTGATTTACCGGATGA+CGG | + | chr4.4:1485551-1485570 | MS.gene058589:CDS | 45.0% | |
| GTCTGTCATCTTGGTTACCT+TGG | - | chr4.4:1485322-1485341 | None:intergenic | 45.0% | |
| TCTGTAGAAACCTCAGGTTC+TGG | - | chr4.4:1485440-1485459 | None:intergenic | 45.0% | |
| TTCAGCTTACTTCCGTAACC+AGG | + | chr4.4:1484504-1484523 | MS.gene058589:intron | 45.0% | |
| TTGACAATCGCGGAAAATGG+CGG | - | chr4.4:1484469-1484488 | None:intergenic | 45.0% | |
| ! | CAACCGATTCCATCATCTCT+TGG | + | chr4.4:1483926-1483945 | MS.gene058589:CDS | 45.0% |
| ! | GGTTCATCGCGATTGTCTTT+TGG | - | chr4.4:1485020-1485039 | None:intergenic | 45.0% |
| ! | TCATCGCGATTGTCTTTTGG+CGG | - | chr4.4:1485017-1485036 | None:intergenic | 45.0% |
| !! | AATTGGCGTTTCTCTGAAGC+AGG | + | chr4.4:1485284-1485303 | MS.gene058589:CDS | 45.0% |
| !! | ATTGGCGTTTCTCTGAAGCA+GGG | + | chr4.4:1485285-1485304 | MS.gene058589:CDS | 45.0% |
| !! | CTCTGAAGCAGGGAATATGT+GGG | + | chr4.4:1485295-1485314 | MS.gene058589:CDS | 45.0% |
| !! | GAGATGATGGAATCGGTTGA+AGG | - | chr4.4:1483925-1483944 | None:intergenic | 45.0% |
| !! | GGACCAAGAGATGATGGAAT+CGG | - | chr4.4:1483932-1483951 | None:intergenic | 45.0% |
| !! | TCTCTGAAGCAGGGAATATG+TGG | + | chr4.4:1485294-1485313 | MS.gene058589:CDS | 45.0% |
| !! | ATACTATATTATATTATTAA+TGG | + | chr4.4:1484186-1484205 | MS.gene058589:intron | 5.0% |
| !! | TACTATATTATATTATTAAT+GGG | + | chr4.4:1484187-1484206 | MS.gene058589:intron | 5.0% |
| AAAAACCCTCACGCAGGAGT+TGG | + | chr4.4:1485100-1485119 | MS.gene058589:CDS | 50.0% | |
| AGCAGCTGAACCAAGAATCC+AGG | - | chr4.4:1485248-1485267 | None:intergenic | 50.0% | |
| ATCAGCGGACCAAGAGATGA+TGG | - | chr4.4:1483938-1483957 | None:intergenic | 50.0% | |
| ATCATCTCTTGGTCCGCTGA+TGG | + | chr4.4:1483937-1483956 | MS.gene058589:CDS | 50.0% | |
| CTACTGAGTGATCGCCTTGA+AGG | + | chr4.4:1485167-1485186 | MS.gene058589:CDS | 50.0% | |
| GAACCGTCATCCGGTAAATC+AGG | - | chr4.4:1485557-1485576 | None:intergenic | 50.0% | |
| GAAGTCGGTAATTGGGGGAA+AGG | - | chr4.4:1484136-1484155 | None:intergenic | 50.0% | |
| GAGTGATCGCCTTGAAGGAA+TGG | + | chr4.4:1485172-1485191 | MS.gene058589:CDS | 50.0% | |
| GCAGCAGATGCTCTCATTCT+TGG | + | chr4.4:1485205-1485224 | MS.gene058589:CDS | 50.0% | |
| GCAGCTGAACCAAGAATCCA+GGG | - | chr4.4:1485247-1485266 | None:intergenic | 50.0% | |
| GGATAGAAAAACCCTCACGC+AGG | + | chr4.4:1485094-1485113 | MS.gene058589:CDS | 50.0% | |
| TCGGCATAAGCTCTCCCAAA+CGG | - | chr4.4:1484359-1484378 | None:intergenic | 50.0% | |
| TCTCCCAAACGGTCTCAGAA+GGG | - | chr4.4:1484348-1484367 | None:intergenic | 50.0% | |
| TGCTGATCTGCAGCAACATG+TGG | - | chr4.4:1484984-1485003 | None:intergenic | 50.0% | |
| TTTGACCAACTCCTGCGTGA+GGG | - | chr4.4:1485108-1485127 | None:intergenic | 50.0% | |
| ! | ATTTACCGGATGACGGTTCG+TGG | + | chr4.4:1485558-1485577 | MS.gene058589:CDS | 50.0% |
| ! | CGATTGTCTTTTGGCGGCAA+TGG | - | chr4.4:1485011-1485030 | None:intergenic | 50.0% |
| ! | GTTGAGTTGTCTGACGAAGC+TGG | - | chr4.4:1484043-1484062 | None:intergenic | 50.0% |
| ! | TTTACCGGATGACGGTTCGT+GGG | + | chr4.4:1485559-1485578 | MS.gene058589:CDS | 50.0% |
| CGTGCAATGCCCTGGATTCT+TGG | + | chr4.4:1485235-1485254 | MS.gene058589:CDS | 55.0% | |
| CTCCCAAACGGTCTCAGAAG+GGG | - | chr4.4:1484347-1484366 | None:intergenic | 55.0% | |
| CTCTCCCAAACGGTCTCAGA+AGG | - | chr4.4:1484349-1484368 | None:intergenic | 55.0% | |
| GCAGGAGATCGTGGAACAAC+AGG | - | chr4.4:1485404-1485423 | None:intergenic | 55.0% | |
| GCAGGGAATATGTGGGACCA+AGG | + | chr4.4:1485302-1485321 | MS.gene058589:CDS | 55.0% | |
| GGTTCAGCTGCTTCACCCTA+AGG | + | chr4.4:1485256-1485275 | MS.gene058589:CDS | 55.0% | |
| GTTTGACCAACTCCTGCGTG+AGG | - | chr4.4:1485109-1485128 | None:intergenic | 55.0% | |
| TGTTCCCACGAACCGTCATC+CGG | - | chr4.4:1485566-1485585 | None:intergenic | 55.0% | |
| !! | AAGCCCCTTCTGAGACCGTT+TGG | + | chr4.4:1484341-1484360 | MS.gene058589:intron | 55.0% |
| !! | AGCCCCTTCTGAGACCGTTT+GGG | + | chr4.4:1484342-1484361 | MS.gene058589:intron | 55.0% |
| !! | CGAGAAGGGTGGTTCTGGTT+CGG | + | chr4.4:1483858-1483877 | MS.gene058589:CDS | 55.0% |
| AGCAGCAACAGCGAGCGAGA+AGG | + | chr4.4:1483843-1483862 | MS.gene058589:CDS | 60.0% | |
| GCAGCAACAGCGAGCGAGAA+GGG | + | chr4.4:1483844-1483863 | MS.gene058589:CDS | 60.0% | |
| GTCATGGTCGTGCAATGCCC+TGG | + | chr4.4:1485227-1485246 | MS.gene058589:CDS | 60.0% | |
| !! | GAAGGGTGGTTCTGGTTCGG+TGG | + | chr4.4:1483861-1483880 | MS.gene058589:CDS | 60.0% |
| GCAACAGCGAGCGAGAAGGG+TGG | + | chr4.4:1483847-1483866 | MS.gene058589:CDS | 65.0% | |
| GCGAGCGAGAAGGGTGGTTC+TGG | + | chr4.4:1483853-1483872 | MS.gene058589:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 1483835 | 1485751 | 1483835 | ID=MS.gene058589 |
| chr4.4 | mRNA | 1483835 | 1485751 | 1483835 | ID=MS.gene058589.t1;Parent=MS.gene058589 |
| chr4.4 | exon | 1483835 | 1484068 | 1483835 | ID=MS.gene058589.t1.exon1;Parent=MS.gene058589.t1 |
| chr4.4 | CDS | 1483835 | 1484068 | 1483835 | ID=cds.MS.gene058589.t1;Parent=MS.gene058589.t1 |
| chr4.4 | exon | 1484882 | 1485751 | 1484882 | ID=MS.gene058589.t1.exon2;Parent=MS.gene058589.t1 |
| chr4.4 | CDS | 1484882 | 1485751 | 1484882 | ID=cds.MS.gene058589.t1;Parent=MS.gene058589.t1 |
| Gene Sequence |
| Protein sequence |
