Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95837.t1 | XP_003630980.1 | 99.2 | 249 | 2 | 0 | 1 | 249 | 1 | 249 | 6.70E-127 | 463.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95837.t1 | Q9ZUA5 | 83.1 | 237 | 40 | 0 | 9 | 245 | 10 | 246 | 1.5e-103 | 377.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95837.t1 | G7LBG9 | 99.2 | 249 | 2 | 0 | 1 | 249 | 1 | 249 | 4.8e-127 | 463.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058588 | MS.gene95837 | 0.972282 | 1.64E-134 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95837.t1 | MTR_8g105790 | 99.197 | 249 | 2 | 0 | 1 | 249 | 1 | 249 | 4.90e-179 | 491 |
| MS.gene95837.t1 | MTR_8g105810 | 86.800 | 250 | 32 | 1 | 1 | 249 | 1 | 250 | 1.65e-157 | 437 |
| MS.gene95837.t1 | MTR_7g076320 | 26.613 | 248 | 175 | 3 | 1 | 241 | 3 | 250 | 2.96e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95837.t1 | AT2G01770 | 83.122 | 237 | 40 | 0 | 9 | 245 | 10 | 246 | 3.95e-144 | 403 |
Find 78 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGCCTCTGCAGCTGCTTA+TGG | 0.219518 | 4.3:+1294014 | MS.gene95837:CDS |
| GCACTATACAATGCTCTTCT+TGG | 0.231503 | 4.3:-1293792 | None:intergenic |
| TTGATTGCTTTGCTTATCTT+TGG | 0.233804 | 4.3:+1293921 | MS.gene95837:CDS |
| TTACGATACGAACCAGTTTC+TGG | 0.248340 | 4.3:-1292276 | None:intergenic |
| ATTGCTATTGCTTACGTATT+GGG | 0.289589 | 4.3:+1293822 | MS.gene95837:CDS |
| GCTTTGGAAACTGCTCTAAT+TGG | 0.299231 | 4.3:+1293987 | MS.gene95837:CDS |
| CTCTGCAGCTGCTTATGGTT+TGG | 0.327872 | 4.3:+1294019 | MS.gene95837:CDS |
| TCACCGGCAACAAGCCTATC+AGG | 0.353963 | 4.3:+1293961 | MS.gene95837:CDS |
| GGAATAGAGGCACATGAATA+TGG | 0.366935 | 4.3:+1292404 | MS.gene95837:CDS |
| TGCTGAGGTGGCAGAAATAT+TGG | 0.367269 | 4.3:+1292373 | MS.gene95837:CDS |
| GTTTCCAAAGCACTCCTGAT+AGG | 0.367638 | 4.3:-1293975 | None:intergenic |
| TTGGCATGGCAGGTTTGAGC+TGG | 0.371854 | 4.3:+1293752 | MS.gene95837:intron |
| GCAGAAATATTGGCTGAGTA+TGG | 0.383074 | 4.3:+1292383 | MS.gene95837:CDS |
| TACAATGCTCTTCTTGGATC+TGG | 0.387148 | 4.3:-1293786 | None:intergenic |
| GGCGGCGACTTCGGCGATGC+CGG | 0.389084 | 4.3:-1292054 | None:intergenic |
| GCCCTCGCCGCCGGTCTCTC+TGG | 0.390424 | 4.3:+1291999 | MS.gene95837:CDS |
| CGCCGCCGGCGCCATCTCCA+TGG | 0.394416 | 4.3:+1292070 | MS.gene95837:CDS |
| GGCTCTGTTTCTCAGGTTCA+AGG | 0.398656 | 4.3:-1291884 | None:intergenic |
| TTGAGAAGGCTCTGTTTCTC+AGG | 0.409645 | 4.3:-1291891 | None:intergenic |
| TGTGTTGTCGTGAAGGTATT+TGG | 0.412813 | 4.3:+1292185 | MS.gene95837:intron |
| GGCGCCATCTCCATGGGTCT+CGG | 0.413142 | 4.3:+1292077 | MS.gene95837:CDS |
| AGAACAGCCTCTGATGCATT+AGG | 0.414520 | 4.3:-1293879 | None:intergenic |
| GGCATCGCCGAAGTCGCCGC+CGG | 0.418402 | 4.3:+1292056 | MS.gene95837:CDS |
| GATGGCGCCGGCGGCGACTT+CGG | 0.423405 | 4.3:-1292063 | None:intergenic |
| ATCGTTACAGTACCAGAAAC+TGG | 0.426709 | 4.3:+1292264 | MS.gene95837:CDS |
| AGACCGGCGGCGAGGGCGAA+AGG | 0.430567 | 4.3:-1291993 | None:intergenic |
| AATTGCTATTGCTTACGTAT+TGG | 0.433881 | 4.3:+1293821 | MS.gene95837:CDS |
| ATTACAATAGAGAATTGAAA+AGG | 0.434289 | 4.3:+1292229 | MS.gene95837:CDS |
| ACTCCTGATAGGCTTGTTGC+CGG | 0.441410 | 4.3:-1293964 | None:intergenic |
| GCTTATCTTTGGCTTTGTCA+AGG | 0.444850 | 4.3:+1293932 | MS.gene95837:CDS |
| CTTATCTTTGGCTTTGTCAA+GGG | 0.448135 | 4.3:+1293933 | MS.gene95837:CDS |
| TTTGTCAAGGGATGCTTCAC+CGG | 0.449841 | 4.3:+1293945 | MS.gene95837:CDS |
| CAAGCCTATCAGGAGTGCTT+TGG | 0.453512 | 4.3:+1293971 | MS.gene95837:CDS |
| GTTCCTTTCGCCCTCGCCGC+CGG | 0.459488 | 4.3:+1291990 | MS.gene95837:CDS |
| AGCATTGGCGCCAGAGAGAC+CGG | 0.471916 | 4.3:-1292009 | None:intergenic |
| GCCAGAGAGACCGGCGGCGA+GGG | 0.479185 | 4.3:-1292000 | None:intergenic |
| TCTTCCATCGTTCTCACTGC+CGG | 0.485751 | 4.3:+1292035 | MS.gene95837:CDS |
| GGCTGTTCTTGTTTCAGTGG+TGG | 0.490681 | 4.3:+1293893 | MS.gene95837:CDS |
| ATCATCATCGGCGTTTCTGA+TGG | 0.491623 | 4.3:+1291960 | MS.gene95837:CDS |
| AGCTGCTTATGGTTTGGCAA+AGG | 0.497745 | 4.3:+1294025 | MS.gene95837:CDS |
| CTTGTTCAAATGGCTGGTAA+TGG | 0.501587 | 4.3:+1291843 | None:intergenic |
| TGAAGGTATTTGGCAGCAAA+AGG | 0.504633 | 4.3:+1292195 | MS.gene95837:intron |
| AGAGGCTGTTCTTGTTTCAG+TGG | 0.506618 | 4.3:+1293890 | MS.gene95837:CDS |
| GCCGCCGGCGCCATCTCCAT+GGG | 0.507839 | 4.3:+1292071 | MS.gene95837:CDS |
| ATTGGCTGAGTATGGAATAG+AGG | 0.509860 | 4.3:+1292391 | MS.gene95837:CDS |
| TGGCATGGCAGGTTTGAGCT+GGG | 0.517647 | 4.3:+1293753 | MS.gene95837:intron |
| ACCCATGGAGATGGCGCCGG+CGG | 0.521241 | 4.3:-1292072 | None:intergenic |
| GCATTAGGAATGAACATGTA+AGG | 0.527058 | 4.3:-1293864 | None:intergenic |
| CATACACTTGTTCAAATGGC+TGG | 0.531327 | 4.3:+1291837 | None:intergenic |
| AACGATGGAAGAAGTAGCAT+TGG | 0.541787 | 4.3:-1292024 | None:intergenic |
| TTACAATAGAGAATTGAAAA+GGG | 0.552550 | 4.3:+1292230 | MS.gene95837:CDS |
| TTTCTCAGAGCATTCACCAC+AGG | 0.554204 | 4.3:-1292428 | None:intergenic |
| GGCGGCGAGGGCGAAAGGAA+CGG | 0.558595 | 4.3:-1291988 | None:intergenic |
| ATAAGCAGCTGCAGAGGCAA+TGG | 0.561549 | 4.3:-1294012 | None:intergenic |
| TTTCAGTGTGGCGATTGAGA+AGG | 0.562660 | 4.3:-1291905 | None:intergenic |
| CCCTCCGAGACCCATGGAGA+TGG | 0.565170 | 4.3:-1292081 | None:intergenic |
| CGCCAGAGAGACCGGCGGCG+AGG | 0.570875 | 4.3:-1292001 | None:intergenic |
| TATTTCAGAAGCTGCTGAGG+TGG | 0.571673 | 4.3:+1292361 | MS.gene95837:intron |
| GCTATTGCTTACGTATTGGG+TGG | 0.579839 | 4.3:+1293825 | MS.gene95837:CDS |
| GAGACCCATGGAGATGGCGC+CGG | 0.581337 | 4.3:-1292075 | None:intergenic |
| CCATCTCCATGGGTCTCGGA+GGG | 0.588120 | 4.3:+1292081 | MS.gene95837:CDS |
| TATTATTTCAGAAGCTGCTG+AGG | 0.589707 | 4.3:+1292358 | MS.gene95837:intron |
| ACTGAAAAGCACTTCACCGC+CGG | 0.593901 | 4.3:+1291921 | MS.gene95837:CDS |
| GATGTCACGGACGATCTCAC+CGG | 0.594283 | 4.3:-1291940 | None:intergenic |
| ATGAACATGTAAGGAATGAG+AGG | 0.596128 | 4.3:-1293855 | None:intergenic |
| AAAGAGCATGAAACTATGGA+TGG | 0.598379 | 4.3:-1294052 | None:intergenic |
| GTGTTACCCTCCGAGACCCA+TGG | 0.602772 | 4.3:-1292087 | None:intergenic |
| TGAGAAAGAATCCTCAAGCA+TGG | 0.613689 | 4.3:+1292444 | MS.gene95837:CDS |
| GCCATCTCCATGGGTCTCGG+AGG | 0.615331 | 4.3:+1292080 | MS.gene95837:CDS |
| CAAACCATAAGCAGCTGCAG+AGG | 0.616863 | 4.3:-1294018 | None:intergenic |
| GTTCATTCCTAATGCATCAG+AGG | 0.624017 | 4.3:+1293872 | MS.gene95837:CDS |
| ATGAAATCAAGCCATGCTTG+AGG | 0.632968 | 4.3:-1292455 | None:intergenic |
| ATCGTCCGTGACATCATCAT+CGG | 0.638810 | 4.3:+1291948 | MS.gene95837:CDS |
| AAACGCCGATGATGATGTCA+CGG | 0.645259 | 4.3:-1291953 | None:intergenic |
| GTCACGGACGATCTCACCGG+CGG | 0.688191 | 4.3:-1291937 | None:intergenic |
| GGCACATGAATATGGACCTG+TGG | 0.703794 | 4.3:+1292412 | MS.gene95837:CDS |
| ATTGGCGCCAGAGAGACCGG+CGG | 0.726652 | 4.3:-1292006 | None:intergenic |
| GATGCCGGCAGTGAGAACGA+TGG | 0.747818 | 4.3:-1292039 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTAAAATAAGATTGATA+TGG | + | chr4.3:1293364-1293383 | MS.gene95837:intron | 10.0% |
| !!! | AAATTTATAGAAAAAGTTTT+CGG | - | chr4.3:1292862-1292881 | None:intergenic | 10.0% |
| !! | GAACAAATTAATTAACAAAT+TGG | + | chr4.3:1293725-1293744 | MS.gene95837:intron | 15.0% |
| !! | TATAAGTAAATAAATATCTC+TGG | + | chr4.3:1293254-1293273 | MS.gene95837:intron | 15.0% |
| !! | TATGATAAAAATTGAAATTG+AGG | - | chr4.3:1292974-1292993 | None:intergenic | 15.0% |
| !! | TTCTTCATAGTATTAAAAAA+AGG | - | chr4.3:1293450-1293469 | None:intergenic | 15.0% |
| !! | AATTTGTGTGAAGATAAAAT+AGG | + | chr4.3:1292931-1292950 | MS.gene95837:intron | 20.0% |
| !! | ATTACAATAGAGAATTGAAA+AGG | + | chr4.3:1292229-1292248 | MS.gene95837:CDS | 20.0% |
| !! | TAATTAACAAATTGGTTACT+TGG | + | chr4.3:1293733-1293752 | MS.gene95837:intron | 20.0% |
| !! | TTACAATAGAGAATTGAAAA+GGG | + | chr4.3:1292230-1292249 | MS.gene95837:CDS | 20.0% |
| !!! | AAAGTAATTTGTCCAAAATT+TGG | + | chr4.3:1292537-1292556 | MS.gene95837:intron | 20.0% |
| !!! | GAAATTAATTCACGTTTTTA+AGG | - | chr4.3:1293664-1293683 | None:intergenic | 20.0% |
| !!! | GGTTTGGAATAAAAAAAAAA+TGG | - | chr4.3:1292998-1293017 | None:intergenic | 20.0% |
| !!! | GTATTCTAGAAACAATAAAA+AGG | - | chr4.3:1293635-1293654 | None:intergenic | 20.0% |
| !!! | TACTTTAGAAATCAAATTAG+AGG | + | chr4.3:1293389-1293408 | MS.gene95837:intron | 20.0% |
| !!! | TGTTTTGAAAAACGTTTTTT+AGG | - | chr4.3:1293302-1293321 | None:intergenic | 20.0% |
| ! | AAGGTGCATGTATATAAAAT+TGG | - | chr4.3:1293616-1293635 | None:intergenic | 25.0% |
| ! | ACGTGAATTAATTTCTACAA+TGG | + | chr4.3:1293669-1293688 | MS.gene95837:intron | 25.0% |
| ! | GAAGATAAAATAGGTAAACA+AGG | + | chr4.3:1292940-1292959 | MS.gene95837:intron | 25.0% |
| ! | TAAATAAATATCTCTGGTCT+TGG | + | chr4.3:1293260-1293279 | MS.gene95837:intron | 25.0% |
| ! | TATATTCATCCACCTTTATA+TGG | + | chr4.3:1293495-1293514 | MS.gene95837:intron | 25.0% |
| !! | ATGAATATAAGTTGGATTCA+TGG | - | chr4.3:1293484-1293503 | None:intergenic | 25.0% |
| !! | GATGTTAATTTAAAGTTGTG+TGG | - | chr4.3:1292813-1292832 | None:intergenic | 25.0% |
| !!! | ACATTGATTCTACAATACAA+TGG | - | chr4.3:1293019-1293038 | None:intergenic | 25.0% |
| !!! | ATTTTTTTGTACAGCTAGTT+AGG | + | chr4.3:1293183-1293202 | MS.gene95837:intron | 25.0% |
| AAAGGTGGATGAATATAAGT+TGG | - | chr4.3:1293492-1293511 | None:intergenic | 30.0% | |
| AATTAGAGGTAGAGATTTAC+TGG | + | chr4.3:1293403-1293422 | MS.gene95837:intron | 30.0% | |
| ATGAATAAATGATCATGTGC+AGG | + | chr4.3:1293206-1293225 | MS.gene95837:intron | 30.0% | |
| ATGTAGAAACCATATAAAGG+TGG | - | chr4.3:1293507-1293526 | None:intergenic | 30.0% | |
| GATTCTACAATACAATGGTT+TGG | - | chr4.3:1293014-1293033 | None:intergenic | 30.0% | |
| GTTGAATGTTAGTTATATGC+TGG | + | chr4.3:1292584-1292603 | MS.gene95837:intron | 30.0% | |
| TAATATTAAGCATATGCTCC+TGG | + | chr4.3:1293082-1293101 | MS.gene95837:intron | 30.0% | |
| TGATTTCAGATTCCAAACTT+TGG | + | chr4.3:1292688-1292707 | MS.gene95837:intron | 30.0% | |
| TGCATGTAGAAACCATATAA+AGG | - | chr4.3:1293510-1293529 | None:intergenic | 30.0% | |
| TTGATTGCTTTGCTTATCTT+TGG | + | chr4.3:1293921-1293940 | MS.gene95837:CDS | 30.0% | |
| ! | AATTGCTATTGCTTACGTAT+TGG | + | chr4.3:1293821-1293840 | MS.gene95837:CDS | 30.0% |
| ! | ATTGCTATTGCTTACGTATT+GGG | + | chr4.3:1293822-1293841 | MS.gene95837:CDS | 30.0% |
| ! | TTTTATCCGTTTGCATTTCA+TGG | - | chr4.3:1293109-1293128 | None:intergenic | 30.0% |
| AACAAATTGGTTACTTGGCA+TGG | + | chr4.3:1293738-1293757 | MS.gene95837:intron | 35.0% | |
| ATAAAAGAAACCCACGTGTA+AGG | - | chr4.3:1293159-1293178 | None:intergenic | 35.0% | |
| ATGAACATGTAAGGAATGAG+AGG | - | chr4.3:1293858-1293877 | None:intergenic | 35.0% | |
| GAGTCCAAACCAAATAGTAT+CGG | - | chr4.3:1292733-1292752 | None:intergenic | 35.0% | |
| GCATTAGGAATGAACATGTA+AGG | - | chr4.3:1293867-1293886 | None:intergenic | 35.0% | |
| TACACCGATACTATTTGGTT+TGG | + | chr4.3:1292726-1292745 | MS.gene95837:intron | 35.0% | |
| TATTATTTCAGAAGCTGCTG+AGG | + | chr4.3:1292358-1292377 | MS.gene95837:intron | 35.0% | |
| ! | GCATTGCAAACTCCAAATTT+TGG | - | chr4.3:1292552-1292571 | None:intergenic | 35.0% |
| !! | AAATATCTCTGGTCTTGGTT+TGG | + | chr4.3:1293265-1293284 | MS.gene95837:intron | 35.0% |
| !! | ATTCACGTTTTTAAGGAAGC+AGG | - | chr4.3:1293657-1293676 | None:intergenic | 35.0% |
| !! | CTTATCTTTGGCTTTGTCAA+GGG | + | chr4.3:1293933-1293952 | MS.gene95837:CDS | 35.0% |
| !!! | AAAGAGAAAGGCACTTTTTC+TGG | + | chr4.3:1292622-1292641 | MS.gene95837:intron | 35.0% |
| AACGATGGAAGAAGTAGCAT+TGG | - | chr4.3:1292027-1292046 | None:intergenic | 40.0% | |
| ACTATGTTGTGTTGTCGTGA+AGG | + | chr4.3:1292178-1292197 | MS.gene95837:intron | 40.0% | |
| AGTTATATGCTGGCAAGAGT+GGG | + | chr4.3:1292594-1292613 | MS.gene95837:intron | 40.0% | |
| ATCGTTACAGTACCAGAAAC+TGG | + | chr4.3:1292264-1292283 | MS.gene95837:CDS | 40.0% | |
| ATGAAATCAAGCCATGCTTG+AGG | - | chr4.3:1292458-1292477 | None:intergenic | 40.0% | |
| ATTGGCTGAGTATGGAATAG+AGG | + | chr4.3:1292391-1292410 | MS.gene95837:CDS | 40.0% | |
| CACAGTACACCGATACTATT+TGG | + | chr4.3:1292721-1292740 | MS.gene95837:intron | 40.0% | |
| GCACTATACAATGCTCTTCT+TGG | - | chr4.3:1293795-1293814 | None:intergenic | 40.0% | |
| GTTCATTCCTAATGCATCAG+AGG | + | chr4.3:1293872-1293891 | MS.gene95837:CDS | 40.0% | |
| TACAATGCTCTTCTTGGATC+TGG | - | chr4.3:1293789-1293808 | None:intergenic | 40.0% | |
| TAGAGGTAGAGATTTACTGG+TGG | + | chr4.3:1293406-1293425 | MS.gene95837:intron | 40.0% | |
| TAGTTATATGCTGGCAAGAG+TGG | + | chr4.3:1292593-1292612 | MS.gene95837:intron | 40.0% | |
| TGAGAAAGAATCCTCAAGCA+TGG | + | chr4.3:1292444-1292463 | MS.gene95837:CDS | 40.0% | |
| TTACGATACGAACCAGTTTC+TGG | - | chr4.3:1292279-1292298 | None:intergenic | 40.0% | |
| ! | GCAGAAATATTGGCTGAGTA+TGG | + | chr4.3:1292383-1292402 | MS.gene95837:CDS | 40.0% |
| ! | GGAATAGAGGCACATGAATA+TGG | + | chr4.3:1292404-1292423 | MS.gene95837:CDS | 40.0% |
| !! | CAAATAGTATCGGTGTACTG+TGG | - | chr4.3:1292723-1292742 | None:intergenic | 40.0% |
| !! | GCTTATCTTTGGCTTTGTCA+AGG | + | chr4.3:1293932-1293951 | MS.gene95837:CDS | 40.0% |
| !! | GCTTTGGAAACTGCTCTAAT+TGG | + | chr4.3:1293987-1294006 | MS.gene95837:CDS | 40.0% |
| !! | TGAAGGTATTTGGCAGCAAA+AGG | + | chr4.3:1292195-1292214 | MS.gene95837:intron | 40.0% |
| !! | TGTGTTGTCGTGAAGGTATT+TGG | + | chr4.3:1292185-1292204 | MS.gene95837:intron | 40.0% |
| !!! | AAAGGCACTTTTTCTGGTTG+TGG | + | chr4.3:1292628-1292647 | MS.gene95837:intron | 40.0% |
| !!! | AAGGCACTTTTTCTGGTTGT+GGG | + | chr4.3:1292629-1292648 | MS.gene95837:intron | 40.0% |
| AATTGGTTACTTGGCATGGC+AGG | + | chr4.3:1293742-1293761 | MS.gene95837:intron | 45.0% | |
| AGAACAGCCTCTGATGCATT+AGG | - | chr4.3:1293882-1293901 | None:intergenic | 45.0% | |
| ATCATCATCGGCGTTTCTGA+TGG | + | chr4.3:1291960-1291979 | MS.gene95837:CDS | 45.0% | |
| ATCCTAGAGAACCTTACACG+TGG | + | chr4.3:1293145-1293164 | MS.gene95837:intron | 45.0% | |
| ATCGTCCGTGACATCATCAT+CGG | + | chr4.3:1291948-1291967 | MS.gene95837:CDS | 45.0% | |
| CCTGGTCCATGAAATGCAAA+CGG | + | chr4.3:1293100-1293119 | MS.gene95837:intron | 45.0% | |
| GAGTGGGATTGGAAAGAGAA+AGG | + | chr4.3:1292610-1292629 | MS.gene95837:intron | 45.0% | |
| GCATGTCCACACTGAAAAAG+TGG | - | chr4.3:1292658-1292677 | None:intergenic | 45.0% | |
| GCTATTGCTTACGTATTGGG+TGG | + | chr4.3:1293825-1293844 | MS.gene95837:CDS | 45.0% | |
| TATTTCAGAAGCTGCTGAGG+TGG | + | chr4.3:1292361-1292380 | MS.gene95837:intron | 45.0% | |
| TCCTAGAGAACCTTACACGT+GGG | + | chr4.3:1293146-1293165 | MS.gene95837:intron | 45.0% | |
| TGCTGAGGTGGCAGAAATAT+TGG | + | chr4.3:1292373-1292392 | MS.gene95837:CDS | 45.0% | |
| TTTCAGTGTGGCGATTGAGA+AGG | - | chr4.3:1291908-1291927 | None:intergenic | 45.0% | |
| TTTGTCAAGGGATGCTTCAC+CGG | + | chr4.3:1293945-1293964 | MS.gene95837:CDS | 45.0% | |
| ! | AAACGCCGATGATGATGTCA+CGG | - | chr4.3:1291956-1291975 | None:intergenic | 45.0% |
| ! | AGAGGCTGTTCTTGTTTCAG+TGG | + | chr4.3:1293890-1293909 | MS.gene95837:CDS | 45.0% |
| ! | AGCTGCTTATGGTTTGGCAA+AGG | + | chr4.3:1294025-1294044 | MS.gene95837:CDS | 45.0% |
| ! | GTTTCCAAAGCACTCCTGAT+AGG | - | chr4.3:1293978-1293997 | None:intergenic | 45.0% |
| ! | TTGAGAAGGCTCTGTTTCTC+AGG | - | chr4.3:1291894-1291913 | None:intergenic | 45.0% |
| ! | TTTCTCAGAGCATTCACCAC+AGG | - | chr4.3:1292431-1292450 | None:intergenic | 45.0% |
| !!! | GGGTTTCCACTTTTTCAGTG+TGG | + | chr4.3:1292649-1292668 | MS.gene95837:intron | 45.0% |
| !!! | ATTTTATTTATTCTAAAAAA+TGG | + | chr4.3:1292305-1292324 | MS.gene95837:intron | 5.0% |
| ACCCACGTGTAAGGTTCTCT+AGG | - | chr4.3:1293150-1293169 | None:intergenic | 50.0% | |
| ATAAGCAGCTGCAGAGGCAA+TGG | - | chr4.3:1294015-1294034 | None:intergenic | 50.0% | |
| ATTGCCTCTGCAGCTGCTTA+TGG | + | chr4.3:1294014-1294033 | MS.gene95837:CDS | 50.0% | |
| CAAACCATAAGCAGCTGCAG+AGG | - | chr4.3:1294021-1294040 | None:intergenic | 50.0% | |
| CCGTTTGCATTTCATGGACC+AGG | - | chr4.3:1293103-1293122 | None:intergenic | 50.0% | |
| CTCTGCAGCTGCTTATGGTT+TGG | + | chr4.3:1294019-1294038 | MS.gene95837:CDS | 50.0% | |
| GGCACATGAATATGGACCTG+TGG | + | chr4.3:1292412-1292431 | MS.gene95837:CDS | 50.0% | |
| TATGCTGGCAAGAGTGGGAT+TGG | + | chr4.3:1292599-1292618 | MS.gene95837:intron | 50.0% | |
| TCTTCCATCGTTCTCACTGC+CGG | + | chr4.3:1292035-1292054 | MS.gene95837:CDS | 50.0% | |
| TGGCACGCATGACCAAAGTT+TGG | - | chr4.3:1292703-1292722 | None:intergenic | 50.0% | |
| ! | GGCTCTGTTTCTCAGGTTCA+AGG | - | chr4.3:1291887-1291906 | None:intergenic | 50.0% |
| ! | GGCTGTTCTTGTTTCAGTGG+TGG | + | chr4.3:1293893-1293912 | MS.gene95837:CDS | 50.0% |
| !! | ACTCCTGATAGGCTTGTTGC+CGG | - | chr4.3:1293967-1293986 | None:intergenic | 50.0% |
| !! | ACTGAAAAGCACTTCACCGC+CGG | + | chr4.3:1291921-1291940 | MS.gene95837:CDS | 50.0% |
| !! | CAAGCCTATCAGGAGTGCTT+TGG | + | chr4.3:1293971-1293990 | MS.gene95837:CDS | 50.0% |
| !! | CGGTGAAGTGCTTTTCAGTG+TGG | - | chr4.3:1291920-1291939 | None:intergenic | 50.0% |
| GATGTCACGGACGATCTCAC+CGG | - | chr4.3:1291943-1291962 | None:intergenic | 55.0% | |
| TCACCGGCAACAAGCCTATC+AGG | + | chr4.3:1293961-1293980 | MS.gene95837:CDS | 55.0% | |
| TGGCATGGCAGGTTTGAGCT+GGG | + | chr4.3:1293753-1293772 | MS.gene95837:intron | 55.0% | |
| TTGGCATGGCAGGTTTGAGC+TGG | + | chr4.3:1293752-1293771 | MS.gene95837:intron | 55.0% | |
| CCATCTCCATGGGTCTCGGA+GGG | + | chr4.3:1292081-1292100 | MS.gene95837:CDS | 60.0% | |
| GATGCCGGCAGTGAGAACGA+TGG | - | chr4.3:1292042-1292061 | None:intergenic | 60.0% | |
| GTGTTACCCTCCGAGACCCA+TGG | - | chr4.3:1292090-1292109 | None:intergenic | 60.0% | |
| !! | AGCATTGGCGCCAGAGAGAC+CGG | - | chr4.3:1292012-1292031 | None:intergenic | 60.0% |
| ATTGGCGCCAGAGAGACCGG+CGG | - | chr4.3:1292009-1292028 | None:intergenic | 65.0% | |
| CCCTCCGAGACCCATGGAGA+TGG | - | chr4.3:1292084-1292103 | None:intergenic | 65.0% | |
| GAGACCCATGGAGATGGCGC+CGG | - | chr4.3:1292078-1292097 | None:intergenic | 65.0% | |
| GCCATCTCCATGGGTCTCGG+AGG | + | chr4.3:1292080-1292099 | MS.gene95837:CDS | 65.0% | |
| GGCGCCATCTCCATGGGTCT+CGG | + | chr4.3:1292077-1292096 | MS.gene95837:CDS | 65.0% | |
| GTCACGGACGATCTCACCGG+CGG | - | chr4.3:1291940-1291959 | None:intergenic | 65.0% | |
| GGCGGCGAGGGCGAAAGGAA+CGG | - | chr4.3:1291991-1292010 | None:intergenic | 70.0% | |
| GTTCCTTTCGCCCTCGCCGC+CGG | + | chr4.3:1291990-1292009 | MS.gene95837:CDS | 70.0% | |
| ! | ACCCATGGAGATGGCGCCGG+CGG | - | chr4.3:1292075-1292094 | None:intergenic | 70.0% |
| AGACCGGCGGCGAGGGCGAA+AGG | - | chr4.3:1291996-1292015 | None:intergenic | 75.0% | |
| GCCAGAGAGACCGGCGGCGA+GGG | - | chr4.3:1292003-1292022 | None:intergenic | 75.0% | |
| GCCGCCGGCGCCATCTCCAT+GGG | + | chr4.3:1292071-1292090 | MS.gene95837:CDS | 75.0% | |
| GGCATCGCCGAAGTCGCCGC+CGG | + | chr4.3:1292056-1292075 | MS.gene95837:CDS | 75.0% | |
| GGCGGCGACTTCGGCGATGC+CGG | - | chr4.3:1292057-1292076 | None:intergenic | 75.0% | |
| !! | GATGGCGCCGGCGGCGACTT+CGG | - | chr4.3:1292066-1292085 | None:intergenic | 75.0% |
| ! | CGCCAGAGAGACCGGCGGCG+AGG | - | chr4.3:1292004-1292023 | None:intergenic | 80.0% |
| ! | CGCCGCCGGCGCCATCTCCA+TGG | + | chr4.3:1292070-1292089 | MS.gene95837:CDS | 80.0% |
| ! | GCCCTCGCCGCCGGTCTCTC+TGG | + | chr4.3:1291999-1292018 | MS.gene95837:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 1291852 | 1294061 | 1291852 | ID=MS.gene95837 |
| chr4.3 | mRNA | 1291852 | 1294061 | 1291852 | ID=MS.gene95837.t1;Parent=MS.gene95837 |
| chr4.3 | exon | 1291852 | 1292102 | 1291852 | ID=MS.gene95837.t1.exon1;Parent=MS.gene95837.t1 |
| chr4.3 | CDS | 1291852 | 1292102 | 1291852 | ID=cds.MS.gene95837.t1;Parent=MS.gene95837.t1 |
| chr4.3 | exon | 1292200 | 1292285 | 1292200 | ID=MS.gene95837.t1.exon2;Parent=MS.gene95837.t1 |
| chr4.3 | CDS | 1292200 | 1292285 | 1292200 | ID=cds.MS.gene95837.t1;Parent=MS.gene95837.t1 |
| chr4.3 | exon | 1292369 | 1292483 | 1292369 | ID=MS.gene95837.t1.exon3;Parent=MS.gene95837.t1 |
| chr4.3 | CDS | 1292369 | 1292483 | 1292369 | ID=cds.MS.gene95837.t1;Parent=MS.gene95837.t1 |
| chr4.3 | exon | 1293764 | 1294061 | 1293764 | ID=MS.gene95837.t1.exon4;Parent=MS.gene95837.t1 |
| chr4.3 | CDS | 1293764 | 1294061 | 1293764 | ID=cds.MS.gene95837.t1;Parent=MS.gene95837.t1 |
| Gene Sequence |
| Protein sequence |
