AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene96049

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96049.t1 MTR_7g075840 98.889 630 6 1 6 635 39 667 0.0 1293
MS.gene96049.t1 MTR_8g033360 82.323 594 102 2 6 596 4 597 0.0 1018
MS.gene96049.t1 MTR_3g107930 59.638 607 229 4 40 630 57 663 0.0 736
MS.gene96049.t1 MTR_3g107930 66.031 524 176 1 109 630 63 586 0.0 731
MS.gene96049.t1 MTR_2g027740 59.961 512 200 3 120 631 160 666 0.0 656
MS.gene96049.t1 MTR_8g092000 58.547 468 189 1 165 632 118 580 0.0 598
MS.gene96049.t1 MTR_2g015550 48.069 466 233 5 171 630 70 532 7.93e-163 477
MS.gene96049.t1 MTR_7g055600 57.421 411 169 4 225 631 25 433 1.28e-159 465
MS.gene96049.t1 MTR_7g057530 57.421 411 169 4 225 631 25 433 1.28e-159 465
MS.gene96049.t1 MTR_4g109890 46.667 495 245 7 146 631 51 535 5.24e-158 465
MS.gene96049.t1 MTR_2g461670 47.312 465 237 5 171 630 128 589 3.06e-156 462
MS.gene96049.t1 MTR_7g096160 47.186 462 216 3 172 630 216 652 8.21e-154 458
MS.gene96049.t1 MTR_6g016380 48.408 471 223 8 180 631 85 554 1.39e-147 439
MS.gene96049.t1 MTR_2g006790 42.918 466 233 6 171 630 70 508 1.78e-134 404
MS.gene96049.t1 MTR_1g070490 42.251 471 240 7 167 632 156 599 1.75e-125 384
MS.gene96049.t1 MTR_2g082650 41.951 410 219 5 240 630 1 410 1.66e-115 351
MS.gene96049.t1 MTR_7g012370 42.623 427 209 8 217 619 110 524 1.36e-114 354
MS.gene96049.t1 MTR_2g082650 41.346 416 225 5 234 630 124 539 3.39e-114 352
MS.gene96049.t1 MTR_6g013840 44.365 417 213 5 235 632 116 532 2.05e-112 347
MS.gene96049.t1 MTR_4g133570 40.874 389 211 4 261 630 74 462 2.06e-104 325
MS.gene96049.t1 MTR_3g452360 38.022 455 243 12 201 630 88 528 7.10e-95 302
MS.gene96049.t1 MTR_3g452360 39.426 383 210 7 265 630 2 379 3.06e-92 290
MS.gene96049.t1 MTR_7g074680 34.369 483 287 6 158 631 103 564 2.64e-84 275
MS.gene96049.t1 MTR_7g074680 34.440 482 286 6 158 630 143 603 9.37e-84 275
MS.gene96049.t1 MTR_7g074680 34.440 482 286 6 158 630 163 623 1.05e-83 275
MS.gene96049.t1 MTR_7g074680 34.440 482 286 6 158 630 163 623 1.40e-83 275
MS.gene96049.t1 MTR_7g074680 34.440 482 286 6 158 630 183 643 1.87e-83 275
MS.gene96049.t1 MTR_7g012370 42.025 326 162 6 235 538 121 441 1.82e-81 265
MS.gene96049.t1 MTR_7g074680 33.267 499 286 7 158 630 183 660 4.08e-80 267
MS.gene96049.t1 MTR_4g133942 57.000 200 56 3 434 630 160 332 5.57e-68 225
MS.gene96049.t1 MTR_4g133942 46.667 75 35 1 173 247 61 130 2.49e-11 65.9
MS.gene96049.t1 MTR_6g008900 24.776 335 201 12 309 622 64 368 1.63e-20 94.4
MS.gene96049.t1 MTR_4g071620 24.776 335 201 12 309 622 64 368 1.63e-20 94.4
MS.gene96049.t1 MTR_4g118030 26.800 250 148 7 390 605 72 320 1.51e-19 90.9
MS.gene96049.t1 MTR_7g109210 29.231 195 130 4 436 622 159 353 1.53e-19 91.3
MS.gene96049.t1 MTR_7g094230 29.714 175 118 3 436 605 151 325 1.83e-19 90.9
MS.gene96049.t1 MTR_3g092310 29.648 199 124 5 436 622 140 334 3.34e-19 89.7
MS.gene96049.t1 MTR_3g111600 26.768 198 136 5 436 624 80 277 2.59e-17 83.2
MS.gene96049.t1 MTR_5g036580 24.545 330 202 12 306 620 62 359 5.35e-17 84.0
MS.gene96049.t1 MTR_8g078240 27.461 193 129 5 436 617 142 334 9.72e-17 82.4
MS.gene96049.t1 MTR_1g021855 28.141 199 133 5 436 624 165 363 1.18e-16 82.4
MS.gene96049.t1 MTR_5g019220 27.778 198 134 5 436 624 166 363 5.05e-15 77.4
MS.gene96049.t1 MTR_1g089820 29.143 175 119 3 436 605 154 328 9.28e-14 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96049.t1 AT3G61130 75.753 631 147 4 5 632 46 673 0.0 1002
MS.gene96049.t1 AT4G38270 63.208 530 189 2 109 632 147 676 0.0 726
MS.gene96049.t1 AT4G38270 63.208 530 189 2 109 632 151 680 0.0 726
MS.gene96049.t1 AT2G46480 60.377 530 203 4 106 632 15 540 0.0 672
MS.gene96049.t1 AT2G46480 60.377 530 203 4 106 632 28 553 0.0 672
MS.gene96049.t1 AT5G47780 64.270 459 162 1 173 631 159 615 0.0 650
MS.gene96049.t1 AT2G46480 56.981 530 196 5 106 632 15 515 0.0 617
MS.gene96049.t1 AT2G46480 56.981 530 196 5 106 632 28 528 0.0 617
MS.gene96049.t1 AT3G25140 55.658 433 179 6 210 631 128 558 1.45e-168 493
MS.gene96049.t1 AT1G18580 48.614 469 229 4 168 628 70 534 2.25e-164 481
MS.gene96049.t1 AT2G20810 47.957 465 231 7 174 630 74 535 4.02e-152 450
MS.gene96049.t1 AT3G02350 52.174 437 201 5 202 631 125 560 6.68e-150 445
MS.gene96049.t1 AT2G30575 44.397 464 231 3 172 632 171 610 5.87e-144 431
MS.gene96049.t1 AT1G06780 44.372 462 231 2 172 630 149 587 1.61e-140 422
MS.gene96049.t1 AT1G06780 44.372 462 231 2 172 630 162 600 3.01e-140 422
MS.gene96049.t1 AT3G01040 45.215 418 210 5 234 632 115 532 3.60e-119 365
MS.gene96049.t1 AT3G01040 45.215 418 210 5 234 632 115 532 3.60e-119 365
MS.gene96049.t1 AT5G15470 45.564 417 208 5 235 632 116 532 5.32e-118 362
MS.gene96049.t1 AT5G54690 38.753 449 244 7 201 630 96 532 7.38e-111 343
MS.gene96049.t1 AT3G01040 42.344 418 189 6 234 632 115 499 2.10e-103 323
MS.gene96049.t1 AT2G38650 36.402 478 277 7 158 630 162 617 1.19e-98 315
MS.gene96049.t1 AT2G38650 36.402 478 277 7 158 630 162 617 1.19e-98 315
MS.gene96049.t1 AT3G58790 36.364 462 257 10 199 630 84 538 5.24e-89 287
MS.gene96049.t1 AT3G58790 38.119 404 224 7 249 630 7 406 1.07e-88 282
MS.gene96049.t1 AT2G38650 37.143 385 216 6 158 538 162 524 2.51e-76 253
MS.gene96049.t1 AT3G06260 30.857 175 116 3 436 605 150 324 5.27e-21 95.5
MS.gene96049.t1 AT4G02130 28.205 195 132 4 436 622 150 344 2.96e-20 93.2
MS.gene96049.t1 AT4G02130 28.205 195 132 4 436 622 150 344 2.96e-20 93.2
MS.gene96049.t1 AT4G02130 28.205 195 132 4 436 622 150 344 2.96e-20 93.2
MS.gene96049.t1 AT1G70090 28.571 196 131 5 436 622 169 364 6.46e-19 89.7
MS.gene96049.t1 AT1G70090 28.571 196 131 5 436 622 169 364 6.46e-19 89.7
MS.gene96049.t1 AT3G62660 27.179 195 134 4 436 622 164 358 1.03e-18 88.6
MS.gene96049.t1 AT1G02720 28.718 195 131 4 436 622 165 359 1.25e-18 88.6
MS.gene96049.t1 AT1G02720 28.718 195 131 4 436 622 165 359 1.25e-18 88.6
MS.gene96049.t1 AT3G28340 28.351 194 129 6 434 617 153 346 2.35e-18 87.8
MS.gene96049.t1 AT1G19300 27.778 198 134 5 436 624 150 347 2.08e-17 84.7
MS.gene96049.t1 AT1G24170 23.913 322 192 10 319 622 81 367 2.74e-16 81.6
MS.gene96049.t1 AT3G50760 26.396 197 136 4 434 621 134 330 6.66e-15 77.0
MS.gene96049.t1 AT1G13250 25.424 295 180 9 319 605 56 318 7.89e-13 70.9

Find 145 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTACTGATAAACTAAATTT+TGG 0.147550 7.4:+29637557 MS.gene96049:CDS
CAGCATGTGCTTACCTCTTT+TGG 0.162685 7.4:-29635726 None:intergenic
TCTTGTCTAAGATGTGTTTC+TGG 0.168293 7.4:-29636058 None:intergenic
GTTCCCTATGACTGAGAATT+TGG 0.196098 7.4:+29637224 MS.gene96049:CDS
TCCACAAGTTTATCCGAAAT+TGG 0.201752 7.4:+29637817 MS.gene96049:CDS
GAAATAATCTTTCTGCTTCT+TGG 0.205764 7.4:+29635890 MS.gene96049:CDS
GACAGGGTACTATGGAAATT+AGG 0.250416 7.4:+29638446 MS.gene96049:CDS
TAAGCCGTGTTTGCAGTTCT+TGG 0.267033 7.4:-29636825 None:intergenic
TATGACTGCAAGTTGGTTAT+TGG 0.275774 7.4:+29637036 MS.gene96049:CDS
ATATCACAGGTGGCAGAATT+TGG 0.278377 7.4:+29638090 MS.gene96049:CDS
AGAAGGATTTGACTGGATTA+TGG 0.290586 7.4:+29637876 MS.gene96049:CDS
ACCCTTCTGGCTAGCCTTAC+GGG 0.301649 7.4:-29636216 None:intergenic
AAAAGAATCTTATCCAATTT+CGG 0.301889 7.4:-29637830 None:intergenic
AAAGAGAGTCAGCGTGCTTT+AGG 0.304821 7.4:+29636847 MS.gene96049:CDS
ATGGTTATACTTGACATATT+TGG 0.307908 7.4:-29638660 None:intergenic
CTGCTTCTTGGAGAGTTGTT+GGG 0.314790 7.4:+29635902 MS.gene96049:CDS
GAGAAGGAAGGAAGATCTTC+AGG 0.324973 7.4:+29636091 MS.gene96049:CDS
CCAGGGCTAATGACATTCTA+TGG 0.326202 7.4:+29638479 MS.gene96049:CDS
TCAGTTGATTCAGCAGTTCT+AGG 0.328896 7.4:+29636670 MS.gene96049:CDS
TCTGCTTCTTGGAGAGTTGT+TGG 0.331359 7.4:+29635901 MS.gene96049:CDS
CACCCTTCTGGCTAGCCTTA+CGG 0.339727 7.4:-29636217 None:intergenic
CCTATTCTCAGACAATGTTT+TGG 0.343893 7.4:+29637272 MS.gene96049:CDS
TGACAAAGTATCGTCCTTAC+TGG 0.346721 7.4:+29638636 MS.gene96049:CDS
CAAAACATTGTCTGAGAATA+GGG 0.349585 7.4:-29637271 None:intergenic
AATGGGCCAAGTTCTTTCTA+AGG 0.354321 7.4:+29636999 MS.gene96049:CDS
TCATGGCATGTACTCGGTTT+GGG 0.356589 7.4:+29638524 MS.gene96049:CDS
ATCATGGCATGTACTCGGTT+TGG 0.363039 7.4:+29638523 MS.gene96049:CDS
TGCCTTCTGTTCTCTCCATT+TGG 0.363246 7.4:-29635679 None:intergenic
TATGTCCAGCACGAATGATA+TGG 0.364399 7.4:+29635843 MS.gene96049:CDS
AAGAAGCAGAAAGATTATTT+CGG 0.364907 7.4:-29635888 None:intergenic
AGTATAACCATCCTTATCTT+AGG 0.371790 7.4:+29638672 MS.gene96049:CDS
CTTGTCTAAGATGTGTTTCT+GGG 0.373678 7.4:-29636057 None:intergenic
TTAACCAAATTCTCAGTCAT+AGG 0.376964 7.4:-29637228 None:intergenic
CCAAAACATTGTCTGAGAAT+AGG 0.379751 7.4:-29637272 None:intergenic
TTCTAGGTAAATACAACCTT+TGG 0.386455 7.4:+29636686 MS.gene96049:CDS
CTTTCGCCTTAGAAAGAACT+TGG 0.387580 7.4:-29637005 None:intergenic
TGGGAGGAGGTAGTAATCTA+TGG 0.391808 7.4:-29637187 None:intergenic
AGTTGGTTATTGGGAAAGTA+AGG 0.391814 7.4:+29637046 MS.gene96049:CDS
ATGACTGCAAGTTGGTTATT+GGG 0.393638 7.4:+29637037 MS.gene96049:CDS
AAGAATGATGCTCACCCTTC+TGG 0.396798 7.4:-29636229 None:intergenic
ACAGGGTACTATGGAAATTA+GGG 0.397082 7.4:+29638447 MS.gene96049:CDS
AATGAACATGTTTGATTTGA+AGG 0.399962 7.4:+29638039 MS.gene96049:CDS
GTCATTGCTATCTCTAACCA+TGG 0.402027 7.4:-29638617 None:intergenic
GCAGCAGTTGTACACTATAA+TGG 0.404766 7.4:+29638584 MS.gene96049:CDS
ACTGCTGATGAGCAGGTTAG+AGG 0.405243 7.4:+29637081 MS.gene96049:CDS
GGCTGCTGAGTTGGTACAAC+AGG 0.408103 7.4:+29636597 MS.gene96049:CDS
AATGAAAGAGTATTATTTCA+AGG 0.412072 7.4:+29637706 MS.gene96049:CDS
TTGAGCATTGAAAGATACTT+TGG 0.416508 7.4:-29637776 None:intergenic
AGAATGAAGACAGGGTACTA+TGG 0.423957 7.4:+29638438 MS.gene96049:intron
ATAATCCAGTCAAATCCTTC+TGG 0.433499 7.4:-29637874 None:intergenic
GACTTCAAACGCAACAAATC+AGG 0.442440 7.4:+29635930 MS.gene96049:CDS
AGCTTACAGTTCCTAAGATA+AGG 0.446048 7.4:-29638683 None:intergenic
TGATCCCAATGCTTGTGGTT+GGG 0.448672 7.4:+29638009 MS.gene96049:CDS
GATTCAAGCTGTCTCAAGAC+TGG 0.449905 7.4:-29637677 None:intergenic
AGTTAAGATATTTGTCGAAT+CGG 0.454272 7.4:-29637958 None:intergenic
GATAAGCAGTGAATTCCATT+TGG 0.456313 7.4:-29637153 None:intergenic
GATGCGAGATCAGATCATTA+TGG 0.457993 7.4:+29636753 MS.gene96049:CDS
ACATGCCATGATTTATTTAG+CGG 0.458664 7.4:-29638512 None:intergenic
AATTCCATTTGGTATGGTCT+TGG 0.460571 7.4:-29637142 None:intergenic
CTCCGATGTTACAAGCCAAC+AGG 0.462187 7.4:+29635557 MS.gene96049:CDS
AATGCTTGTGGTTGGGCATA+CGG 0.463683 7.4:+29638016 MS.gene96049:CDS
AGGTGAAACACATGCTTTGA+AGG 0.468782 7.4:-29637533 None:intergenic
ATGTCCAGCACGAATGATAT+GGG 0.468872 7.4:+29635844 MS.gene96049:CDS
TTGACATATTTGGTCCAGTA+AGG 0.471463 7.4:-29638650 None:intergenic
AAAGAGTATTATTTCAAGGC+AGG 0.473099 7.4:+29637710 MS.gene96049:CDS
TAGGTAAATACAACCTTTGG+AGG 0.475012 7.4:+29636689 MS.gene96049:CDS
AGAGAAAAGGATGGCAAAGC+GGG 0.478274 7.4:+29636576 MS.gene96049:CDS
TGCAGCAATTAATAGAGAAA+AGG 0.478481 7.4:+29636563 MS.gene96049:intron
TTATGGAATGTGGATCTTCA+TGG 0.483883 7.4:+29637893 MS.gene96049:CDS
TCCAATTTCGGATAAACTTG+TGG 0.484620 7.4:-29637818 None:intergenic
GATCTTCATGGAAAAGTTAA+CGG 0.487784 7.4:+29637905 MS.gene96049:CDS
CACATCCGCTAAATAAATCA+TGG 0.490767 7.4:+29638507 MS.gene96049:CDS
TTTGATTTCAGAATGAAGAC+AGG 0.492079 7.4:+29638429 MS.gene96049:intron
GGCAAAGCGGGCTGCTGAGT+TGG 0.492938 7.4:+29636588 MS.gene96049:CDS
GCTACAAACTGCTGATGAGC+AGG 0.495112 7.4:+29637074 MS.gene96049:CDS
TCTTGGCAGCCAACTGACTA+AGG 0.499672 7.4:-29637125 None:intergenic
TATGCCCAACCACAAGCATT+GGG 0.502397 7.4:-29638013 None:intergenic
CCATAGAATGTCATTAGCCC+TGG 0.504949 7.4:-29638479 None:intergenic
TAGGGCATAATGATAAAGAC+TGG 0.506359 7.4:-29637253 None:intergenic
TCTTAGACAAGAAGTTCAAA+AGG 0.513227 7.4:+29636069 MS.gene96049:CDS
GCAGGCCACCCATCCACTAC+TGG 0.513960 7.4:+29637728 MS.gene96049:CDS
ACATAGATTGTAGCTTTACC+AGG 0.515583 7.4:-29637611 None:intergenic
CTTGTGGAAGATAGAACCTC+AGG 0.518942 7.4:-29637802 None:intergenic
AAAATGTTGATGAATTTAAG+TGG 0.519458 7.4:+29637636 MS.gene96049:CDS
TGTAAGCTAAGTGAATGGTC+TGG 0.522229 7.4:+29638698 MS.gene96049:CDS
ATCTCCGTACGATCTATACT+TGG 0.524349 7.4:-29638554 None:intergenic
GTTGTCCAGAAGGATTTGAC+TGG 0.529202 7.4:+29637869 MS.gene96049:CDS
TTGATCCCAATGCTTGTGGT+TGG 0.532084 7.4:+29638008 MS.gene96049:CDS
GCAGTGAATTCCATTTGGTA+TGG 0.537356 7.4:-29637148 None:intergenic
AGGCCCCATATCATTCGTGC+TGG 0.538645 7.4:-29635848 None:intergenic
GTATGCCCAACCACAAGCAT+TGG 0.539148 7.4:-29638014 None:intergenic
CAGTCCAAGTATAGATCGTA+CGG 0.543562 7.4:+29638550 MS.gene96049:CDS
AAGCACATTCCTTAGTCAGT+TGG 0.552027 7.4:+29637116 MS.gene96049:CDS
GCTGCCAAGACCATACCAAA+TGG 0.554333 7.4:+29637138 MS.gene96049:CDS
AACTTTGATCCCAATGCTTG+TGG 0.555666 7.4:+29638004 MS.gene96049:CDS
AGAATGCTGATTCTACCGTT+CGG 0.555890 7.4:+29636728 MS.gene96049:CDS
AGATCAGATCATTATGGCTA+GGG 0.557672 7.4:+29636759 MS.gene96049:CDS
GGAGGTAGTAATCTATGGTA+AGG 0.557714 7.4:-29637182 None:intergenic
ACATTACTGGCATATATCAC+AGG 0.557897 7.4:+29638077 MS.gene96049:CDS
TAACCAAATTCTCAGTCATA+GGG 0.564966 7.4:-29637227 None:intergenic
ACAAGAAGTTCAAAAGGAGA+AGG 0.565190 7.4:+29636075 MS.gene96049:CDS
TCCCGTAAGGCTAGCCAGAA+GGG 0.568105 7.4:+29636215 MS.gene96049:CDS
GAGATCAGATCATTATGGCT+AGG 0.570674 7.4:+29636758 MS.gene96049:CDS
GTCCCGTAAGGCTAGCCAGA+AGG 0.574160 7.4:+29636214 MS.gene96049:CDS
AAATTAGGGACATTACCTCC+AGG 0.574173 7.4:+29638461 MS.gene96049:CDS
ACATGTTTGATTTGAAGGTG+TGG 0.576976 7.4:+29638044 MS.gene96049:CDS
AATAAATCATGGCATGTACT+CGG 0.577057 7.4:+29638518 MS.gene96049:CDS
GGCTGTTGCAGGCTACCAAA+TGG 0.577386 7.4:+29635664 MS.gene96049:intron
TACCTGTTGGCTTGTAACAT+CGG 0.579742 7.4:-29635559 None:intergenic
TTAGAAGCACCAGTAGTGGA+TGG 0.580206 7.4:-29637737 None:intergenic
GAAGTTCAAAAGGAGAAGGA+AGG 0.583365 7.4:+29636079 MS.gene96049:CDS
GAGATTAGAAGCACCAGTAG+TGG 0.588353 7.4:-29637741 None:intergenic
TCAATTGTATGACTGCAAGT+TGG 0.592735 7.4:+29637029 MS.gene96049:CDS
GGAACTGTAAGCTAAGTGAA+TGG 0.593776 7.4:+29638693 MS.gene96049:CDS
TACCAAATGGAGAGAACAGA+AGG 0.593932 7.4:+29635677 MS.gene96049:CDS
CTGATCTCGCATCAACCGAA+CGG 0.595642 7.4:-29636743 None:intergenic
TTTCAATGCTCAACCACCTG+AGG 0.596049 7.4:+29637786 MS.gene96049:CDS
TACAGTTCCTAAGATAAGGA+TGG 0.597078 7.4:-29638679 None:intergenic
ATTCAAGCTGTCTCAAGACT+GGG 0.597835 7.4:-29637676 None:intergenic
TGTACCAAGAACTGCAAACA+CGG 0.602677 7.4:+29636821 MS.gene96049:CDS
AATTTAGTTTATCAGTAACA+AGG 0.603779 7.4:-29637553 None:intergenic
TGATGACATTGTTGTCCAGA+AGG 0.605837 7.4:+29637859 MS.gene96049:CDS
TTTGACTGGATTATGGAATG+TGG 0.606404 7.4:+29637883 MS.gene96049:CDS
ATTGTGCATACCTCTGGTGT+AGG 0.607000 7.4:-29636891 None:intergenic
TAGAAGCACCAGTAGTGGAT+GGG 0.607302 7.4:-29637736 None:intergenic
ATGCAGCAGGTCTTCCTCAG+TGG 0.620368 7.4:+29636184 MS.gene96049:intron
GCAATTAATAGAGAAAAGGA+TGG 0.621349 7.4:+29636567 MS.gene96049:intron
CTCAACTGTTGTGAATGCAA+AGG 0.621934 7.4:+29637314 MS.gene96049:CDS
AAGCACCAGTAGTGGATGGG+TGG 0.630751 7.4:-29637733 None:intergenic
ATAATGGTAATATGAAGCCA+TGG 0.631825 7.4:+29638600 MS.gene96049:CDS
GTTGGTTATTGGGAAAGTAA+GGG 0.635336 7.4:+29637047 MS.gene96049:CDS
GAGTCAGCGTGCTTTAGGTG+AGG 0.637586 7.4:+29636852 MS.gene96049:CDS
TTGATTTCAGAATGAAGACA+GGG 0.646041 7.4:+29638430 MS.gene96049:intron
AGTGGACTGATAGTCCCGTA+AGG 0.647693 7.4:+29636202 MS.gene96049:CDS
AGGGCATAATGATAAAGACT+GGG 0.655474 7.4:-29637252 None:intergenic
TAGAATGTCATTAGCCCTGG+AGG 0.657306 7.4:-29638476 None:intergenic
AATTAGGGACATTACCTCCA+GGG 0.657912 7.4:+29638462 MS.gene96049:CDS
TAGAGAAAAGGATGGCAAAG+CGG 0.669580 7.4:+29636575 MS.gene96049:CDS
TAGATTGTAGCTTTACCAGG+AGG 0.679016 7.4:-29637608 None:intergenic
TGTCCAGCACGAATGATATG+GGG 0.682822 7.4:+29635845 MS.gene96049:CDS
AACGGTGCAGTTGAAACATG+TGG 0.702671 7.4:+29637923 MS.gene96049:CDS
TTACTGGCATATATCACAGG+TGG 0.707903 7.4:+29638080 MS.gene96049:CDS
GTGGAAGATAGAACCTCAGG+TGG 0.712503 7.4:-29637799 None:intergenic
CTGATGCTGACCTACACCAG+AGG 0.718609 7.4:+29636881 MS.gene96049:CDS
ACGGGACTATCAGTCCACTG+AGG 0.806472 7.4:-29636198 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTTATCAAATAATAGA+TGG - chr7.4:29637454-29637473 None:intergenic 10.0%
!!! ATTAGTTTTAAAATAGAAAT+TGG - chr7.4:29638247-29638266 None:intergenic 10.0%
!! AAATCAAACATGAAAAAAAA+TGG - chr7.4:29638417-29638436 None:intergenic 15.0%
!! TAGCATTCTAATAATATAAT+TGG + chr7.4:29635447-29635466 MS.gene96049:intron 15.0%
!! TTAATGAAAAATTAATGAGA+AGG - chr7.4:29636165-29636184 None:intergenic 15.0%
!! TTCACTAAAGATAATTAATT+AGG - chr7.4:29636962-29636981 None:intergenic 15.0%
!! AAAAGAATCTTATCCAATTT+CGG - chr7.4:29637833-29637852 None:intergenic 20.0%
!! AACATAAGTTAATGAATGAA+GGG - chr7.4:29637491-29637510 None:intergenic 20.0%
!! TACAAACACAATTTAGTTAA+TGG - chr7.4:29636290-29636309 None:intergenic 20.0%
!!! AAAATGTTGATGAATTTAAG+TGG + chr7.4:29637636-29637655 MS.gene96049:CDS 20.0%
!!! AATGAAAGAGTATTATTTCA+AGG + chr7.4:29637706-29637725 MS.gene96049:CDS 20.0%
!!! AATTTAGTTTATCAGTAACA+AGG - chr7.4:29637556-29637575 None:intergenic 20.0%
!!! GTTACTGATAAACTAAATTT+TGG + chr7.4:29637557-29637576 MS.gene96049:CDS 20.0%
! AACAACATAGGGTAAAAAAA+TGG - chr7.4:29635644-29635663 None:intergenic 25.0%
! AAGAAGCAGAAAGATTATTT+CGG - chr7.4:29635891-29635910 None:intergenic 25.0%
! ACATGAAAAAATCAAAGCAA+TGG + chr7.4:29636981-29637000 MS.gene96049:CDS 25.0%
! ACATTAAAATCAGTAGCAAT+AGG - chr7.4:29636016-29636035 None:intergenic 25.0%
! AGGTGAAATAAAATAAAGCA+TGG - chr7.4:29636145-29636164 None:intergenic 25.0%
! AGTTAAGATATTTGTCGAAT+CGG - chr7.4:29637961-29637980 None:intergenic 25.0%
! ATGGTTATACTTGACATATT+TGG - chr7.4:29638663-29638682 None:intergenic 25.0%
! CAACATAAGTTAATGAATGA+AGG - chr7.4:29637492-29637511 None:intergenic 25.0%
! CAATAAAAACCACATATTCA+TGG - chr7.4:29637585-29637604 None:intergenic 25.0%
! CATATGATCCTTCTATTATA+TGG + chr7.4:29635273-29635292 MS.gene96049:intron 25.0%
! CATGAAAAAATCAAAGCAAT+GGG + chr7.4:29636982-29637001 MS.gene96049:CDS 25.0%
! GGTGAAATAAAATAAAGCAT+GGG - chr7.4:29636144-29636163 None:intergenic 25.0%
! GTGAAATAAAATAAAGCATG+GGG - chr7.4:29636143-29636162 None:intergenic 25.0%
! TCTAATCAATACCATATTGT+AGG + chr7.4:29635807-29635826 MS.gene96049:intron 25.0%
!! CAAATCCATCATCTTTAAAA+AGG - chr7.4:29637399-29637418 None:intergenic 25.0%
!! CATGCTATTTGTATATGATA+AGG - chr7.4:29636372-29636391 None:intergenic 25.0%
!! TAAATCTCTTTTTCCAAAAG+AGG + chr7.4:29635713-29635732 MS.gene96049:CDS 25.0%
!! TAATTTTTCATTAATGCAGC+AGG + chr7.4:29636171-29636190 MS.gene96049:intron 25.0%
!! TTACATCATGTTTCTATTCT+CGG + chr7.4:29638138-29638157 MS.gene96049:intron 25.0%
!!! AATGAACATGTTTGATTTGA+AGG + chr7.4:29638039-29638058 MS.gene96049:CDS 25.0%
!!! ACAATATGGTATTGATTAGA+AGG - chr7.4:29635807-29635826 None:intergenic 25.0%
!!! ACATTCCTTTTTAAAGATGA+TGG + chr7.4:29637391-29637410 MS.gene96049:intron 25.0%
!!! ATTTTTTTACCCTATGTTGT+TGG + chr7.4:29635643-29635662 MS.gene96049:intron 25.0%
!!! CTTTTGGAAAAAGAGATTTA+AGG - chr7.4:29635713-29635732 None:intergenic 25.0%
!!! TCAAAGTTTTTTGCAATATG+TGG - chr7.4:29637992-29638011 None:intergenic 25.0%
!!! TTATACATTTTCAGGTTCAT+TGG + chr7.4:29635589-29635608 MS.gene96049:intron 25.0%
AACATCAAGAACCTACAATA+TGG - chr7.4:29635821-29635840 None:intergenic 30.0%
AAGTTAATGAATGAAGGGTT+GGG - chr7.4:29637486-29637505 None:intergenic 30.0%
AATAAATCATGGCATGTACT+CGG + chr7.4:29638518-29638537 MS.gene96049:CDS 30.0%
ACATCATTAATGAGTAGCAA+AGG - chr7.4:29635141-29635160 None:intergenic 30.0%
ACATGCCATGATTTATTTAG+CGG - chr7.4:29638515-29638534 None:intergenic 30.0%
AGCCATATTTGTGTTTAAAC+AGG - chr7.4:29635324-29635343 None:intergenic 30.0%
AGTATAACCATCCTTATCTT+AGG + chr7.4:29638672-29638691 MS.gene96049:CDS 30.0%
ATAATGGTAATATGAAGCCA+TGG + chr7.4:29638600-29638619 MS.gene96049:CDS 30.0%
ATCAAGGCTACTATTATTGT+AGG - chr7.4:29636426-29636445 None:intergenic 30.0%
CAAAACATTGTCTGAGAATA+GGG - chr7.4:29637274-29637293 None:intergenic 30.0%
GAAATAATCTTTCTGCTTCT+TGG + chr7.4:29635890-29635909 MS.gene96049:CDS 30.0%
GAGCAAATTGAACATAACAT+CGG + chr7.4:29638114-29638133 MS.gene96049:intron 30.0%
GATCTTCATGGAAAAGTTAA+CGG + chr7.4:29637905-29637924 MS.gene96049:CDS 30.0%
GCAATTAATAGAGAAAAGGA+TGG + chr7.4:29636567-29636586 MS.gene96049:intron 30.0%
GTCCTGTTTAAACACAAATA+TGG + chr7.4:29635319-29635338 MS.gene96049:intron 30.0%
TAACCAAATTCTCAGTCATA+GGG - chr7.4:29637230-29637249 None:intergenic 30.0%
TAAGTTAATGAATGAAGGGT+TGG - chr7.4:29637487-29637506 None:intergenic 30.0%
TCTTAGACAAGAAGTTCAAA+AGG + chr7.4:29636069-29636088 MS.gene96049:CDS 30.0%
TGAAAATATTGTTTGACCTG+TGG + chr7.4:29636464-29636483 MS.gene96049:intron 30.0%
TGCAGCAATTAATAGAGAAA+AGG + chr7.4:29636563-29636582 MS.gene96049:intron 30.0%
TTAACCAAATTCTCAGTCAT+AGG - chr7.4:29637231-29637250 None:intergenic 30.0%
TTCTAGGTAAATACAACCTT+TGG + chr7.4:29636686-29636705 MS.gene96049:CDS 30.0%
TTGATTTCAGAATGAAGACA+GGG + chr7.4:29638430-29638449 MS.gene96049:intron 30.0%
! AGCTCGTTTTATACATTTTC+AGG + chr7.4:29635581-29635600 MS.gene96049:intron 30.0%
! TAGAGCATCCATATAATAGA+AGG - chr7.4:29635284-29635303 None:intergenic 30.0%
! TTTCATTTTCTTTCCTCCAA+AGG - chr7.4:29636705-29636724 None:intergenic 30.0%
! TTTGATTTCAGAATGAAGAC+AGG + chr7.4:29638429-29638448 MS.gene96049:intron 30.0%
!! AAAGAGTATTATTTCAAGGC+AGG + chr7.4:29637710-29637729 MS.gene96049:CDS 30.0%
!! ATGGTATTGATTAGAAGGTT+GGG - chr7.4:29635802-29635821 None:intergenic 30.0%
!! TATGGTATTGATTAGAAGGT+TGG - chr7.4:29635803-29635822 None:intergenic 30.0%
!! TTGAGCATTGAAAGATACTT+TGG - chr7.4:29637779-29637798 None:intergenic 30.0%
!!! ATCCTCATCTTTTGTTGTTA+AGG + chr7.4:29635358-29635377 MS.gene96049:intron 30.0%
AAGCACCACATTAAAAGGTA+TGG - chr7.4:29636328-29636347 None:intergenic 35.0%
AATTCCATTTGGTATGGTCT+TGG - chr7.4:29637145-29637164 None:intergenic 35.0%
ACAAGAAGTTCAAAAGGAGA+AGG + chr7.4:29636075-29636094 MS.gene96049:CDS 35.0%
ACATTACTGGCATATATCAC+AGG + chr7.4:29638077-29638096 MS.gene96049:CDS 35.0%
AGAAGGATTTGACTGGATTA+TGG + chr7.4:29637876-29637895 MS.gene96049:CDS 35.0%
AGATCAGATCATTATGGCTA+GGG + chr7.4:29636759-29636778 MS.gene96049:CDS 35.0%
AGCTTACAGTTCCTAAGATA+AGG - chr7.4:29638686-29638705 None:intergenic 35.0%
AGGCTACTATTATTGTAGGT+TGG - chr7.4:29636422-29636441 None:intergenic 35.0%
AGGGCATAATGATAAAGACT+GGG - chr7.4:29637255-29637274 None:intergenic 35.0%
AGTTGGTTATTGGGAAAGTA+AGG + chr7.4:29637046-29637065 MS.gene96049:CDS 35.0%
ATAATCCAGTCAAATCCTTC+TGG - chr7.4:29637877-29637896 None:intergenic 35.0%
ATCACAAGCACCACATTAAA+AGG - chr7.4:29636333-29636352 None:intergenic 35.0%
CACATCCGCTAAATAAATCA+TGG + chr7.4:29638507-29638526 MS.gene96049:CDS 35.0%
CAGAACATCATACTTCATCA+AGG - chr7.4:29636442-29636461 None:intergenic 35.0%
CCAAAACATTGTCTGAGAAT+AGG - chr7.4:29637275-29637294 None:intergenic 35.0%
GATAAGCAGTGAATTCCATT+TGG - chr7.4:29637156-29637175 None:intergenic 35.0%
GCTACTATTATTGTAGGTTG+GGG - chr7.4:29636420-29636439 None:intergenic 35.0%
GGCTACTATTATTGTAGGTT+GGG - chr7.4:29636421-29636440 None:intergenic 35.0%
GTCCTTAACAACAAAAGATG+AGG - chr7.4:29635363-29635382 None:intergenic 35.0%
GTTGGTTATTGGGAAAGTAA+GGG + chr7.4:29637047-29637066 MS.gene96049:CDS 35.0%
TACAGTTCCTAAGATAAGGA+TGG - chr7.4:29638682-29638701 None:intergenic 35.0%
TAGGGCATAATGATAAAGAC+TGG - chr7.4:29637256-29637275 None:intergenic 35.0%
TAGGTAAATACAACCTTTGG+AGG + chr7.4:29636689-29636708 MS.gene96049:CDS 35.0%
TCAATTGTATGACTGCAAGT+TGG + chr7.4:29637029-29637048 MS.gene96049:CDS 35.0%
TCCAATTTCGGATAAACTTG+TGG - chr7.4:29637821-29637840 None:intergenic 35.0%
TCCACAAGTTTATCCGAAAT+TGG + chr7.4:29637817-29637836 MS.gene96049:CDS 35.0%
TGGAAAAAGAAGGACATTAC+TGG + chr7.4:29638064-29638083 MS.gene96049:CDS 35.0%
TTATGGAATGTGGATCTTCA+TGG + chr7.4:29637893-29637912 MS.gene96049:CDS 35.0%
TTGACATATTTGGTCCAGTA+AGG - chr7.4:29638653-29638672 None:intergenic 35.0%
TTTGACTGGATTATGGAATG+TGG + chr7.4:29637883-29637902 MS.gene96049:CDS 35.0%
! ACAGGGTACTATGGAAATTA+GGG + chr7.4:29638447-29638466 MS.gene96049:CDS 35.0%
! ACATAGATTGTAGCTTTACC+AGG - chr7.4:29637614-29637633 None:intergenic 35.0%
! AGCACCACATTAAAAGGTAT+GGG - chr7.4:29636327-29636346 None:intergenic 35.0%
! ATAGGGAACTTTCTCTTTTC+AGG - chr7.4:29637213-29637232 None:intergenic 35.0%
! ATCTCCCATACCTTTTAATG+TGG + chr7.4:29636320-29636339 MS.gene96049:intron 35.0%
! CATGTTTCTATTCTCGGAAT+TGG + chr7.4:29638144-29638163 MS.gene96049:intron 35.0%
! CCTATTCTCAGACAATGTTT+TGG + chr7.4:29637272-29637291 MS.gene96049:CDS 35.0%
! CGGAAATTTTCTAGACTCAA+AGG - chr7.4:29635871-29635890 None:intergenic 35.0%
! CTTGTCTAAGATGTGTTTCT+GGG - chr7.4:29636060-29636079 None:intergenic 35.0%
! GTCTTTTATGATACATGTGC+TGG + chr7.4:29637350-29637369 MS.gene96049:intron 35.0%
! TCTTGTCTAAGATGTGTTTC+TGG - chr7.4:29636061-29636080 None:intergenic 35.0%
! TGGTTTTTATTGAATCCTCC+TGG + chr7.4:29637593-29637612 MS.gene96049:CDS 35.0%
! TTTGAAGGTGTGGAAAAAGA+AGG + chr7.4:29638054-29638073 MS.gene96049:CDS 35.0%
!! AAAGATGATGGATTTGAGCT+TGG + chr7.4:29637403-29637422 MS.gene96049:intron 35.0%
!! ACATGTTTGATTTGAAGGTG+TGG + chr7.4:29638044-29638063 MS.gene96049:CDS 35.0%
!! ATGACTGCAAGTTGGTTATT+GGG + chr7.4:29637037-29637056 MS.gene96049:CDS 35.0%
!! TATGACTGCAAGTTGGTTAT+TGG + chr7.4:29637036-29637055 MS.gene96049:CDS 35.0%
!!! ATTTTGGAGCCATGAATATG+TGG + chr7.4:29637573-29637592 MS.gene96049:CDS 35.0%
AAATTAGGGACATTACCTCC+AGG + chr7.4:29638461-29638480 MS.gene96049:CDS 40.0%
AACCAAGGAATCTAGACTGT+TGG - chr7.4:29638306-29638325 None:intergenic 40.0%
AACTTTGATCCCAATGCTTG+TGG + chr7.4:29638004-29638023 MS.gene96049:CDS 40.0%
AAGCACATTCCTTAGTCAGT+TGG + chr7.4:29637116-29637135 MS.gene96049:CDS 40.0%
AATGGGCCAAGTTCTTTCTA+AGG + chr7.4:29636999-29637018 MS.gene96049:CDS 40.0%
AATTAGGGACATTACCTCCA+GGG + chr7.4:29638462-29638481 MS.gene96049:CDS 40.0%
AGCATGATTCCCTACAGTTA+GGG - chr7.4:29638346-29638365 None:intergenic 40.0%
AGGACAATAATGCCTTTCGA+GGG - chr7.4:29635996-29636015 None:intergenic 40.0%
AGGTGAAACACATGCTTTGA+AGG - chr7.4:29637536-29637555 None:intergenic 40.0%
AGTGTAATGTCCTTGATGTG+AGG + chr7.4:29635409-29635428 MS.gene96049:intron 40.0%
ATAAAGAAAACTCGCTCCAC+AGG - chr7.4:29636483-29636502 None:intergenic 40.0%
ATATCACAGGTGGCAGAATT+TGG + chr7.4:29638090-29638109 MS.gene96049:CDS 40.0%
ATCTCCGTACGATCTATACT+TGG - chr7.4:29638557-29638576 None:intergenic 40.0%
ATGTCCAGCACGAATGATAT+GGG + chr7.4:29635844-29635863 MS.gene96049:CDS 40.0%
ATTCAAGCTGTCTCAAGACT+GGG - chr7.4:29637679-29637698 None:intergenic 40.0%
ATTTCTTCCTCCTCACATCA+AGG - chr7.4:29635422-29635441 None:intergenic 40.0%
CAAACGCAACAAATCAGGTT+AGG + chr7.4:29635935-29635954 MS.gene96049:intron 40.0%
CAGAAAATTGTGCATACCTC+TGG - chr7.4:29636900-29636919 None:intergenic 40.0%
CAGTCCAAGTATAGATCGTA+CGG + chr7.4:29638550-29638569 MS.gene96049:CDS 40.0%
CTCAACTGTTGTGAATGCAA+AGG + chr7.4:29637314-29637333 MS.gene96049:CDS 40.0%
CTTTCGCCTTAGAAAGAACT+TGG - chr7.4:29637008-29637027 None:intergenic 40.0%
GAAGTTCAAAAGGAGAAGGA+AGG + chr7.4:29636079-29636098 MS.gene96049:CDS 40.0%
GACTTCAAACGCAACAAATC+AGG + chr7.4:29635930-29635949 MS.gene96049:CDS 40.0%
GAGATCAGATCATTATGGCT+AGG + chr7.4:29636758-29636777 MS.gene96049:CDS 40.0%
GATGCGAGATCAGATCATTA+TGG + chr7.4:29636753-29636772 MS.gene96049:CDS 40.0%
GCAGCAGTTGTACACTATAA+TGG + chr7.4:29638584-29638603 MS.gene96049:CDS 40.0%
GCAGTGAATTCCATTTGGTA+TGG - chr7.4:29637151-29637170 None:intergenic 40.0%
GGAACTGTAAGCTAAGTGAA+TGG + chr7.4:29638693-29638712 MS.gene96049:CDS 40.0%
GGAGGTAGTAATCTATGGTA+AGG - chr7.4:29637185-29637204 None:intergenic 40.0%
GTATAAAACGAGCTACCTGT+TGG - chr7.4:29635575-29635594 None:intergenic 40.0%
GTCATTGCTATCTCTAACCA+TGG - chr7.4:29638620-29638639 None:intergenic 40.0%
GTTCCCTATGACTGAGAATT+TGG + chr7.4:29637224-29637243 MS.gene96049:CDS 40.0%
GTTGTTGTCTTTGACATTGC+AGG + chr7.4:29637508-29637527 MS.gene96049:intron 40.0%
TACCAAATGGAGAGAACAGA+AGG + chr7.4:29635677-29635696 MS.gene96049:CDS 40.0%
TAGAGAAAAGGATGGCAAAG+CGG + chr7.4:29636575-29636594 MS.gene96049:CDS 40.0%
TAGGACAATAATGCCTTTCG+AGG - chr7.4:29635997-29636016 None:intergenic 40.0%
TATGTCCAGCACGAATGATA+TGG + chr7.4:29635843-29635862 MS.gene96049:CDS 40.0%
TGATGACATTGTTGTCCAGA+AGG + chr7.4:29637859-29637878 MS.gene96049:CDS 40.0%
TGATGTGAGGAGGAAGAAAT+AGG + chr7.4:29635422-29635441 MS.gene96049:intron 40.0%
TGTAAGCTAAGTGAATGGTC+TGG + chr7.4:29638698-29638717 MS.gene96049:CDS 40.0%
TGTACCAAGAACTGCAAACA+CGG + chr7.4:29636821-29636840 MS.gene96049:CDS 40.0%
TTACTGGCATATATCACAGG+TGG + chr7.4:29638080-29638099 MS.gene96049:CDS 40.0%
! AAGTTTGATTTCCCCTCGAA+AGG + chr7.4:29635981-29636000 MS.gene96049:intron 40.0%
! AGAATGAAGACAGGGTACTA+TGG + chr7.4:29638438-29638457 MS.gene96049:intron 40.0%
! GACAGGGTACTATGGAAATT+AGG + chr7.4:29638446-29638465 MS.gene96049:CDS 40.0%
! TAGATTGTAGCTTTACCAGG+AGG - chr7.4:29637611-29637630 None:intergenic 40.0%
! TCAGTTGATTCAGCAGTTCT+AGG + chr7.4:29636670-29636689 MS.gene96049:CDS 40.0%
! TTCCTCGGTTTAGAACTCAT+TGG + chr7.4:29635218-29635237 MS.gene96049:intron 40.0%
!! AGAATGCTGATTCTACCGTT+CGG + chr7.4:29636728-29636747 MS.gene96049:CDS 40.0%
!! GTATTGATTAGAAGGTTGGG+AGG - chr7.4:29635799-29635818 None:intergenic 40.0%
!! TACCTGTTGGCTTGTAACAT+CGG - chr7.4:29635562-29635581 None:intergenic 40.0%
!! TGACAAAGTATCGTCCTTAC+TGG + chr7.4:29638636-29638655 MS.gene96049:CDS 40.0%
!!! GGAACTTTCTCTTTTCAGGT+GGG - chr7.4:29637209-29637228 None:intergenic 40.0%
AAAGAGAGTCAGCGTGCTTT+AGG + chr7.4:29636847-29636866 MS.gene96049:CDS 45.0%
AACGGTGCAGTTGAAACATG+TGG + chr7.4:29637923-29637942 MS.gene96049:CDS 45.0%
AAGAATGATGCTCACCCTTC+TGG - chr7.4:29636232-29636251 None:intergenic 45.0%
AATGCTTGTGGTTGGGCATA+CGG + chr7.4:29638016-29638035 MS.gene96049:CDS 45.0%
ACTGTTGCAAGCAAAACACG+TGG - chr7.4:29637431-29637450 None:intergenic 45.0%
AGAAGGGTGAGCATCATTCT+TGG + chr7.4:29636231-29636250 MS.gene96049:intron 45.0%
AGAGAAAAGGATGGCAAAGC+GGG + chr7.4:29636576-29636595 MS.gene96049:CDS 45.0%
AGCCAACAGTCTAGATTCCT+TGG + chr7.4:29638301-29638320 MS.gene96049:intron 45.0%
AGTCTAGATTCCTTGGTTGC+AGG + chr7.4:29638308-29638327 MS.gene96049:intron 45.0%
ATCATGGCATGTACTCGGTT+TGG + chr7.4:29638523-29638542 MS.gene96049:CDS 45.0%
ATTGTGCATACCTCTGGTGT+AGG - chr7.4:29636894-29636913 None:intergenic 45.0%
CAACCACGAATCTCGAATCT+CGG + chr7.4:29638195-29638214 MS.gene96049:intron 45.0%
CCAGGGCTAATGACATTCTA+TGG + chr7.4:29638479-29638498 MS.gene96049:CDS 45.0%
CCATAGAATGTCATTAGCCC+TGG - chr7.4:29638482-29638501 None:intergenic 45.0%
CTGCAACAGCCAACAACATA+GGG - chr7.4:29635655-29635674 None:intergenic 45.0%
CTGCTTCTTGGAGAGTTGTT+GGG + chr7.4:29635902-29635921 MS.gene96049:CDS 45.0%
CTTGTGGAAGATAGAACCTC+AGG - chr7.4:29637805-29637824 None:intergenic 45.0%
GAGAAGGAAGGAAGATCTTC+AGG + chr7.4:29636091-29636110 MS.gene96049:CDS 45.0%
GAGCATGATTCCCTACAGTT+AGG - chr7.4:29638347-29638366 None:intergenic 45.0%
GATTCAAGCTGTCTCAAGAC+TGG - chr7.4:29637680-29637699 None:intergenic 45.0%
GGACAATAATGCCTTTCGAG+GGG - chr7.4:29635995-29636014 None:intergenic 45.0%
GTAATGTCCTTGATGTGAGG+AGG + chr7.4:29635412-29635431 MS.gene96049:intron 45.0%
GTTGTCCAGAAGGATTTGAC+TGG + chr7.4:29637869-29637888 MS.gene96049:CDS 45.0%
GTTTCGCTCTTGTACTTCCT+CGG + chr7.4:29635203-29635222 MS.gene96049:intron 45.0%
TAAGCCGTGTTTGCAGTTCT+TGG - chr7.4:29636828-29636847 None:intergenic 45.0%
TAGAATGTCATTAGCCCTGG+AGG - chr7.4:29638479-29638498 None:intergenic 45.0%
TATGCCCAACCACAAGCATT+GGG - chr7.4:29638016-29638035 None:intergenic 45.0%
TCATGGCATGTACTCGGTTT+GGG + chr7.4:29638524-29638543 MS.gene96049:CDS 45.0%
TCTGCTTCTTGGAGAGTTGT+TGG + chr7.4:29635901-29635920 MS.gene96049:CDS 45.0%
TGATCCCAATGCTTGTGGTT+GGG + chr7.4:29638009-29638028 MS.gene96049:CDS 45.0%
TGCCTTCTGTTCTCTCCATT+TGG - chr7.4:29635682-29635701 None:intergenic 45.0%
TGGGAGGAGGTAGTAATCTA+TGG - chr7.4:29637190-29637209 None:intergenic 45.0%
TGTCCAGCACGAATGATATG+GGG + chr7.4:29635845-29635864 MS.gene96049:CDS 45.0%
TTGATCCCAATGCTTGTGGT+TGG + chr7.4:29638008-29638027 MS.gene96049:CDS 45.0%
TTTCAATGCTCAACCACCTG+AGG + chr7.4:29637786-29637805 MS.gene96049:CDS 45.0%
! CAGCATGTGCTTACCTCTTT+TGG - chr7.4:29635729-29635748 None:intergenic 45.0%
!! CACCAATGAGTTCTAAACCG+AGG - chr7.4:29635223-29635242 None:intergenic 45.0%
!! GAGATTAGAAGCACCAGTAG+TGG - chr7.4:29637744-29637763 None:intergenic 45.0%
!! GGGAACTTTCTCTTTTCAGG+TGG - chr7.4:29637210-29637229 None:intergenic 45.0%
!! TAGAAGCACCAGTAGTGGAT+GGG - chr7.4:29637739-29637758 None:intergenic 45.0%
!! TTAGAAGCACCAGTAGTGGA+TGG - chr7.4:29637740-29637759 None:intergenic 45.0%
!!! ACTTTCTCTTTTCAGGTGGG+AGG - chr7.4:29637206-29637225 None:intergenic 45.0%
ACTGCTGATGAGCAGGTTAG+AGG + chr7.4:29637081-29637100 MS.gene96049:CDS 50.0%
CAAGAGCGAAACAGCAACAG+AGG - chr7.4:29635195-29635214 None:intergenic 50.0%
CCTGCAACAGCCAACAACAT+AGG - chr7.4:29635656-29635675 None:intergenic 50.0%
CTCCGATGTTACAAGCCAAC+AGG + chr7.4:29635557-29635576 MS.gene96049:CDS 50.0%
CTGATCTCGCATCAACCGAA+CGG - chr7.4:29636746-29636765 None:intergenic 50.0%
GAATCTCGAATCTCGGCTGT+TGG + chr7.4:29638202-29638221 MS.gene96049:intron 50.0%
GCTACAAACTGCTGATGAGC+AGG + chr7.4:29637074-29637093 MS.gene96049:CDS 50.0%
GCTGCCAAGACCATACCAAA+TGG + chr7.4:29637138-29637157 MS.gene96049:CDS 50.0%
GTATGCCCAACCACAAGCAT+TGG - chr7.4:29638017-29638036 None:intergenic 50.0%
GTGGAAGATAGAACCTCAGG+TGG - chr7.4:29637802-29637821 None:intergenic 50.0%
GTGTGCTTGCCCTAACTGTA+GGG + chr7.4:29638334-29638353 MS.gene96049:intron 50.0%
TCTTGGCAGCCAACTGACTA+AGG - chr7.4:29637128-29637147 None:intergenic 50.0%
TGGTTGCGTGCAGTACTATG+TGG - chr7.4:29638181-29638200 None:intergenic 50.0%
TGTGTGCTTGCCCTAACTGT+AGG + chr7.4:29638333-29638352 MS.gene96049:intron 50.0%
! ACTGTTGGCTGAGGATCAGA+CGG - chr7.4:29638291-29638310 None:intergenic 50.0%
! CCTATGTTGTTGGCTGTTGC+AGG + chr7.4:29635653-29635672 MS.gene96049:intron 50.0%
! GGAATCTAGACTGTTGGCTG+AGG - chr7.4:29638300-29638319 None:intergenic 50.0%
!! AGTGGACTGATAGTCCCGTA+AGG + chr7.4:29636202-29636221 MS.gene96049:CDS 50.0%
!!! TTCTCTTTTCAGGTGGGAGG+AGG - chr7.4:29637203-29637222 None:intergenic 50.0%
ACGGGACTATCAGTCCACTG+AGG - chr7.4:29636201-29636220 None:intergenic 55.0%
AGCACACAGTCCTGCAACCA+AGG - chr7.4:29638321-29638340 None:intergenic 55.0%
AGGCCCCATATCATTCGTGC+TGG - chr7.4:29635851-29635870 None:intergenic 55.0%
ATGCAGCAGGTCTTCCTCAG+TGG + chr7.4:29636184-29636203 MS.gene96049:intron 55.0%
CAGCCGAGATTCGAGATTCG+TGG - chr7.4:29638201-29638220 None:intergenic 55.0%
CTGATGCTGACCTACACCAG+AGG + chr7.4:29636881-29636900 MS.gene96049:CDS 55.0%
GGCTGTTGCAGGCTACCAAA+TGG + chr7.4:29635664-29635683 MS.gene96049:intron 55.0%
! GAGTCAGCGTGCTTTAGGTG+AGG + chr7.4:29636852-29636871 MS.gene96049:CDS 55.0%
! TCCCGTAAGGCTAGCCAGAA+GGG + chr7.4:29636215-29636234 MS.gene96049:CDS 55.0%
!! AAGCACCAGTAGTGGATGGG+TGG - chr7.4:29637736-29637755 None:intergenic 55.0%
!! ACCCTTCTGGCTAGCCTTAC+GGG - chr7.4:29636219-29636238 None:intergenic 55.0%
!! CACCCTTCTGGCTAGCCTTA+CGG - chr7.4:29636220-29636239 None:intergenic 55.0%
!! GGCTGCTGAGTTGGTACAAC+AGG + chr7.4:29636597-29636616 MS.gene96049:CDS 55.0%
! GTCCCGTAAGGCTAGCCAGA+AGG + chr7.4:29636214-29636233 MS.gene96049:CDS 60.0%
GCAGGCCACCCATCCACTAC+TGG + chr7.4:29637728-29637747 MS.gene96049:CDS 65.0%
!! GGCAAAGCGGGCTGCTGAGT+TGG + chr7.4:29636588-29636607 MS.gene96049:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 29635116 29638724 29635116 ID=MS.gene96049
chr7.4 mRNA 29635116 29638724 29635116 ID=MS.gene96049.t1;Parent=MS.gene96049
chr7.4 exon 29635116 29635134 29635116 ID=MS.gene96049.t1.exon1;Parent=MS.gene96049.t1
chr7.4 CDS 29635116 29635134 29635116 ID=cds.MS.gene96049.t1;Parent=MS.gene96049.t1
chr7.4 exon 29635544 29635578 29635544 ID=MS.gene96049.t1.exon2;Parent=MS.gene96049.t1
chr7.4 CDS 29635544 29635578 29635544 ID=cds.MS.gene96049.t1;Parent=MS.gene96049.t1
chr7.4 exon 29635675 29635734 29635675 ID=MS.gene96049.t1.exon3;Parent=MS.gene96049.t1
chr7.4 CDS 29635675 29635734 29635675 ID=cds.MS.gene96049.t1;Parent=MS.gene96049.t1
chr7.4 exon 29635829 29635951 29635829 ID=MS.gene96049.t1.exon4;Parent=MS.gene96049.t1
chr7.4 CDS 29635829 29635951 29635829 ID=cds.MS.gene96049.t1;Parent=MS.gene96049.t1
chr7.4 exon 29636049 29636112 29636049 ID=MS.gene96049.t1.exon5;Parent=MS.gene96049.t1
chr7.4 CDS 29636049 29636112 29636049 ID=cds.MS.gene96049.t1;Parent=MS.gene96049.t1
chr7.4 exon 29636190 29636236 29636190 ID=MS.gene96049.t1.exon6;Parent=MS.gene96049.t1
chr7.4 CDS 29636190 29636236 29636190 ID=cds.MS.gene96049.t1;Parent=MS.gene96049.t1
chr7.4 exon 29636568 29636902 29636568 ID=MS.gene96049.t1.exon7;Parent=MS.gene96049.t1
chr7.4 CDS 29636568 29636902 29636568 ID=cds.MS.gene96049.t1;Parent=MS.gene96049.t1
chr7.4 exon 29636978 29637335 29636978 ID=MS.gene96049.t1.exon8;Parent=MS.gene96049.t1
chr7.4 CDS 29636978 29637335 29636978 ID=cds.MS.gene96049.t1;Parent=MS.gene96049.t1
chr7.4 exon 29637530 29638111 29637530 ID=MS.gene96049.t1.exon9;Parent=MS.gene96049.t1
chr7.4 CDS 29637530 29638111 29637530 ID=cds.MS.gene96049.t1;Parent=MS.gene96049.t1
chr7.4 exon 29638440 29638724 29638440 ID=MS.gene96049.t1.exon10;Parent=MS.gene96049.t1
chr7.4 CDS 29638440 29638724 29638440 ID=cds.MS.gene96049.t1;Parent=MS.gene96049.t1
Gene Sequence

>MS.gene96049

ATGGTTGATATGATAAGTCGTACCTTTGCTACTCATTAATGATGTTTTTCATGAAATGTATCTCACTTTGCTTATGCCTCTGTTGCTGTTTCGCTCTTGTACTTCCTCGGTTTAGAACTCATTGGTGTTTTTAACTGAATCAACATTGTGTTTCAAACATATGATCCTTCTATTATATGGATGCTCTAGAAAGTATTGATCTTGTCCTGTTTAAACACAAATATGGCTCAGTTTGTTTGTGAATCCTCATCTTTTGTTGTTAAGGACTTTTAATTATGAAAAATAAGAGATTTAGTGTAATGTCCTTGATGTGAGGAGGAAGAAATAGGAGTAGCATTCTAATAATATAATTGGCATCGCTATGAATTTCTCTTACGCGCATATACATGAGTTTATGTTATAGTAATTACTTCATTTACATTATGCAGATCACAATGATATCTCCGATGTTACAAGCCAACAGGTAGCTCGTTTTATACATTTTCAGGTTCATTGGTTATACAGATGAATGCATACAATATCTAGCCATTTTTTTACCCTATGTTGTTGGCTGTTGCAGGCTACCAAATGGAGAGAACAGAAGGCACTACACGACCTTAAATCTCTTTTTCCAAAAGAGGTAAGCACATGCTGACATCACTCTTGTTTTGTCTTTCGTAATATTTTCATGCAAGAGTTATCCTCCCAACCTTCTAATCAATACCATATTGTAGGTTCTTGATGTTATTATGTCCAGCACGAATGATATGGGGCCTTTGAGTCTAGAAAATTTCCGAAATAATCTTTCTGCTTCTTGGAGAGTTGTTGGGTCAAAGACTTCAAACGCAACAAATCAGGTTAGGATTACTGATGTGCTTCTGCTTGAAAGTTTGATTTCCCCTCGAAAGGCATTATTGTCCTATTGCTACTGATTTTAATGTTTTTTAATTAAAGCTAAACAACCCAGAAACACATCTTAGACAAGAAGTTCAAAAGGAGAAGGAAGGAAGATCTTCAGGTTGTATCAGATACTATCAGTTAATATCCCCATGCTTTATTTTATTTCACCTTCTCATTAATTTTTCATTAATGCAGCAGGTCTTCCTCAGTGGACTGATAGTCCCGTAAGGCTAGCCAGAAGGGTGAGCATCATTCTTGGATATTTATCTTTTTTCACTTAGCATTTTAGATACCATTAACTAAATTGTGTTTGTAGTGAAGAGTAATCTCCCATACCTTTTAATGTGGTGCTTGTGATAGTGACAAAAAAAAAGCCTTATCATATACAAATAGCATGATATAATAATATAATTCTTAGCAGACCCCAACCTACAATAATAGTAGCCTTGATGAAGTATGATGTTCTGTTTGAAAATATTGTTTGACCTGTGGAGCGAGTTTTCTTTATTTAGAGAACAACAAATATATTCTTAAAGTAAACTTTGTTTTGCTCTTTTTTAATATCTTCTGCAGCAATTAATAGAGAAAAGGATGGCAAAGCGGGCTGCTGAGTTGGTACAACAGGATGATGAAGTTATTGTAAAACTTGAAGATTTAGCTATTGAACGTTCAAAATCAGTTGATTCAGCAGTTCTAGGTAAATACAACCTTTGGAGGAAAGAAAATGAAAATGAGAATGCTGATTCTACCGTTCGGTTGATGCGAGATCAGATCATTATGGCTAGGGTATACTTGAGTATTGCAAAGATGAAGAACAAGCTTGAATTGTACCAAGAACTGCAAACACGGCTTAAAGAGAGTCAGCGTGCTTTAGGTGAGGCAACTTCTGATGCTGACCTACACCAGAGGTATGCACAATTTTCTGAAGTGTATAAATATCTGCATCTGTTTGTATATACACTAACCTAATTAATTATCTTTAGTGAACATGAAAAAATCAAAGCAATGGGCCAAGTTCTTTCTAAGGCGAAAGATCAATTGTATGACTGCAAGTTGGTTATTGGGAAAGTAAGGGCAATGCTACAAACTGCTGATGAGCAGGTTAGAGGCTTGAAGAAACAAAGCACATTCCTTAGTCAGTTGGCTGCCAAGACCATACCAAATGGAATTCACTGCTTATCGATGCGCCTTACCATAGATTACTACCTCCTCCCACCTGAAAAGAGAAAGTTCCCTATGACTGAGAATTTGGTTAATCCCAGTCTTTATCATTATGCCCTATTCTCAGACAATGTTTTGGCTGCATCTGTTGTTGTCAACTCAACTGTTGTGAATGCAAAGGTAAAGAACTAACAGTCTTTTATGATACATGTGCTGGTGTGTATGTTTTTCAAGCACATTCCTTTTTAAAGATGATGGATTTGAGCTTGGATCCACGTGTTTTGCTTGCAACAGTCCATCTATTATTTGATAAATAATATTATTAAACCCAACCCTTCATTCATTAACTTATGTTGTTGTCTTTGACATTGCAGGATCCTTCAAAGCATGTGTTTCACCTTGTTACTGATAAACTAAATTTTGGAGCCATGAATATGTGGTTTTTATTGAATCCTCCTGGTAAAGCTACAATCTATGTTGAAAATGTTGATGAATTTAAGTGGTTGAACTCATCTTACTGCCCAGTCTTGAGACAGCTTGAATCTGCGACAATGAAAGAGTATTATTTCAAGGCAGGCCACCCATCCACTACTGGTGCTTCTAATCTCAAATACAGAAATCCAAAGTATCTTTCAATGCTCAACCACCTGAGGTTCTATCTTCCACAAGTTTATCCGAAATTGGATAAGATTCTTTTTCTTGATGATGACATTGTTGTCCAGAAGGATTTGACTGGATTATGGAATGTGGATCTTCATGGAAAAGTTAACGGTGCAGTTGAAACATGTGGTGAGAGCTTTCACCGATTCGACAAATATCTTAACTTTTCAAATCCACATATTGCAAAAAACTTTGATCCCAATGCTTGTGGTTGGGCATACGGAATGAACATGTTTGATTTGAAGGTGTGGAAAAAGAAGGACATTACTGGCATATATCACAGGTGGCAGAATTTGGTGAGCAAATTGAACATAACATCGGTTTACATCATGTTTCTATTCTCGGAATTGGCTTCTCTGCAACCACATAGTACTGCACGCAACCACGAATCTCGAATCTCGGCTGTTGGATATCAGATGACTCTTATTCCAATTTCTATTTTAAAACTAATTTGAAGAAGTCAGAATGTGAGCCGTCTGATCCTCAGCCAACAGTCTAGATTCCTTGGTTGCAGGACTGTGTGCTTGCCCTAACTGTAGGGAATCATGCTCTGTCTATCTTCACATAAATAGACAAAACAAATGTGATCTTTCACTGACCATTTTTTTTCATGTTTGATTTCAGAATGAAGACAGGGTACTATGGAAATTAGGGACATTACCTCCAGGGCTAATGACATTCTATGGATTAACACATCCGCTAAATAAATCATGGCATGTACTCGGTTTGGGTTACAGTCCAAGTATAGATCGTACGGAGATTGAGAATGCAGCAGTTGTACACTATAATGGTAATATGAAGCCATGGTTAGAGATAGCAATGACAAAGTATCGTCCTTACTGGACCAAATATGTCAAGTATAACCATCCTTATCTTAGGAACTGTAAGCTAAGTGAATGGTCTGGATAA
Protein sequence

>MS.gene96049.t1

MVDMISHHNDISDVTSQQATKWREQKALHDLKSLFPKEVLDVIMSSTNDMGPLSLENFRNNLSASWRVVGSKTSNATNQLNNPETHLRQEVQKEKEGRSSAGLPQWTDSPVRLARRQLIEKRMAKRAAELVQQDDEVIVKLEDLAIERSKSVDSAVLGKYNLWRKENENENADSTVRLMRDQIIMARVYLSIAKMKNKLELYQELQTRLKESQRALGEATSDADLHQSEHEKIKAMGQVLSKAKDQLYDCKLVIGKVRAMLQTADEQVRGLKKQSTFLSQLAAKTIPNGIHCLSMRLTIDYYLLPPEKRKFPMTENLVNPSLYHYALFSDNVLAASVVVNSTVVNAKDPSKHVFHLVTDKLNFGAMNMWFLLNPPGKATIYVENVDEFKWLNSSYCPVLRQLESATMKEYYFKAGHPSTTGASNLKYRNPKYLSMLNHLRFYLPQVYPKLDKILFLDDDIVVQKDLTGLWNVDLHGKVNGAVETCGESFHRFDKYLNFSNPHIAKNFDPNACGWAYGMNMFDLKVWKKKDITGIYHRWQNLNEDRVLWKLGTLPPGLMTFYGLTHPLNKSWHVLGLGYSPSIDRTEIENAAVVHYNGNMKPWLEIAMTKYRPYWTKYVKYNHPYLRNCKLSEWSG