Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96051.t1 | XP_003623798.2 | 95.8 | 525 | 11 | 1 | 1 | 525 | 1 | 514 | 7.20E-256 | 892.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96051.t1 | A0JJX5 | 37.5 | 464 | 252 | 10 | 1 | 432 | 1 | 458 | 6.5e-80 | 299.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96051.t1 | G7L1E7 | 95.8 | 525 | 11 | 1 | 1 | 525 | 1 | 514 | 5.2e-256 | 892.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055331 | MS.gene96051 | 0.816869 | 4.43E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96051.t1 | MTR_7g075790 | 96.000 | 525 | 10 | 1 | 1 | 525 | 1 | 514 | 0.0 | 1007 |
| MS.gene96051.t1 | MTR_8g035590 | 81.107 | 524 | 85 | 3 | 1 | 523 | 1 | 511 | 0.0 | 790 |
| MS.gene96051.t1 | MTR_4g115660 | 36.790 | 405 | 244 | 8 | 15 | 413 | 15 | 413 | 1.36e-84 | 273 |
| MS.gene96051.t1 | MTR_4g115660 | 40.385 | 104 | 59 | 2 | 262 | 362 | 440 | 543 | 1.44e-14 | 76.6 |
| MS.gene96051.t1 | MTR_3g106660 | 37.164 | 409 | 236 | 11 | 17 | 417 | 17 | 412 | 1.10e-79 | 260 |
| MS.gene96051.t1 | MTR_3g106660 | 37.374 | 99 | 61 | 1 | 262 | 359 | 439 | 537 | 4.21e-12 | 68.9 |
| MS.gene96051.t1 | MTR_4g073400 | 33.151 | 365 | 230 | 8 | 38 | 395 | 38 | 395 | 1.25e-61 | 211 |
| MS.gene96051.t1 | MTR_1g094810 | 34.197 | 386 | 234 | 11 | 4 | 378 | 3 | 379 | 3.44e-61 | 210 |
| MS.gene96051.t1 | MTR_1g025550 | 32.653 | 343 | 220 | 6 | 58 | 395 | 59 | 395 | 1.59e-53 | 189 |
| MS.gene96051.t1 | MTR_2g072180 | 25.676 | 296 | 196 | 11 | 68 | 343 | 74 | 365 | 1.00e-12 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96051.t1 | AT3G61050 | 74.952 | 523 | 117 | 2 | 1 | 523 | 1 | 509 | 0.0 | 744 |
| MS.gene96051.t1 | AT3G61050 | 74.952 | 523 | 117 | 2 | 1 | 523 | 1 | 509 | 0.0 | 744 |
| MS.gene96051.t1 | AT3G61030 | 60.519 | 347 | 71 | 8 | 18 | 364 | 1 | 281 | 7.87e-127 | 380 |
| MS.gene96051.t1 | AT3G60950 | 59.366 | 347 | 82 | 6 | 18 | 364 | 1 | 288 | 7.52e-124 | 376 |
| MS.gene96051.t1 | AT1G05500 | 40.609 | 394 | 222 | 8 | 1 | 388 | 1 | 388 | 3.64e-97 | 305 |
| MS.gene96051.t1 | AT1G05500 | 38.144 | 97 | 59 | 1 | 262 | 357 | 434 | 530 | 9.04e-13 | 71.2 |
| MS.gene96051.t1 | AT5G04220 | 35.813 | 363 | 209 | 9 | 61 | 416 | 62 | 407 | 1.01e-66 | 225 |
| MS.gene96051.t1 | AT5G04220 | 35.933 | 359 | 206 | 9 | 65 | 416 | 4 | 345 | 1.03e-65 | 221 |
| MS.gene96051.t1 | AT1G05500 | 41.600 | 250 | 135 | 7 | 144 | 388 | 1 | 244 | 2.04e-56 | 194 |
| MS.gene96051.t1 | AT1G05500 | 38.144 | 97 | 59 | 1 | 262 | 357 | 290 | 386 | 1.06e-12 | 70.5 |
| MS.gene96051.t1 | AT1G20080 | 30.000 | 400 | 260 | 9 | 1 | 395 | 11 | 395 | 1.46e-55 | 195 |
| MS.gene96051.t1 | AT1G20080 | 30.000 | 400 | 260 | 9 | 1 | 395 | 11 | 395 | 1.46e-55 | 195 |
| MS.gene96051.t1 | AT1G20080 | 30.000 | 400 | 260 | 9 | 1 | 395 | 11 | 395 | 1.46e-55 | 195 |
| MS.gene96051.t1 | AT1G20080 | 30.000 | 400 | 260 | 9 | 1 | 395 | 11 | 395 | 1.46e-55 | 195 |
| MS.gene96051.t1 | AT1G20080 | 30.000 | 400 | 260 | 9 | 1 | 395 | 11 | 395 | 1.46e-55 | 195 |
| MS.gene96051.t1 | AT2G20990 | 30.484 | 351 | 231 | 7 | 58 | 401 | 59 | 403 | 1.00e-51 | 185 |
| MS.gene96051.t1 | AT2G20990 | 28.533 | 375 | 231 | 7 | 58 | 401 | 59 | 427 | 4.18e-48 | 175 |
| MS.gene96051.t1 | AT2G20990 | 28.278 | 389 | 228 | 9 | 58 | 401 | 59 | 441 | 5.85e-45 | 167 |
| MS.gene96051.t1 | AT5G04220 | 32.828 | 198 | 113 | 6 | 224 | 416 | 3 | 185 | 9.01e-22 | 96.7 |
| MS.gene96051.t1 | AT3G14590 | 25.926 | 297 | 196 | 11 | 68 | 343 | 70 | 363 | 2.87e-14 | 76.3 |
| MS.gene96051.t1 | AT3G14590 | 25.926 | 297 | 196 | 11 | 68 | 343 | 39 | 332 | 3.59e-14 | 75.9 |
| MS.gene96051.t1 | AT3G14590 | 25.926 | 297 | 196 | 11 | 68 | 343 | 25 | 318 | 3.70e-14 | 75.9 |
| MS.gene96051.t1 | AT1G53590 | 26.144 | 306 | 200 | 11 | 68 | 353 | 70 | 369 | 4.66e-14 | 75.5 |
| MS.gene96051.t1 | AT5G47710 | 43.299 | 97 | 48 | 5 | 260 | 352 | 3 | 96 | 4.79e-11 | 62.0 |
| MS.gene96051.t1 | AT5G47710 | 43.299 | 97 | 48 | 5 | 260 | 352 | 3 | 96 | 4.79e-11 | 62.0 |
| MS.gene96051.t1 | AT5G47710 | 43.299 | 97 | 48 | 5 | 260 | 352 | 3 | 96 | 4.79e-11 | 62.0 |
| MS.gene96051.t1 | AT5G47710 | 43.299 | 97 | 48 | 5 | 260 | 352 | 3 | 96 | 4.79e-11 | 62.0 |
Find 146 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTTAAGTCGTCTCTATTA+AGG | 0.184837 | 7.4:+29651240 | None:intergenic |
| TGGTGATCCTAATATTGTTT+TGG | 0.213144 | 7.4:-29647962 | MS.gene96051:CDS |
| CTGAAAGAGGAAGGAGTTAT+TGG | 0.221560 | 7.4:-29645355 | MS.gene96051:CDS |
| ATAACAACTTGAATCCAATT+TGG | 0.233940 | 7.4:-29646493 | MS.gene96051:CDS |
| TGTTGCGTCAATTCCTATTC+AGG | 0.249460 | 7.4:-29647926 | MS.gene96051:intron |
| TCAACACCCAAAACAATATT+AGG | 0.266728 | 7.4:+29647955 | None:intergenic |
| TCGAATTCCTCATTCCAAAT+TGG | 0.268535 | 7.4:+29646479 | None:intergenic |
| AGCAAATGATCTAAAGAATA+TGG | 0.282376 | 7.4:-29646591 | MS.gene96051:CDS |
| TTCAGAGTGTAATCAATTCT+AGG | 0.288525 | 7.4:+29647173 | None:intergenic |
| CTTTAAGTCGTCTCTATTAA+GGG | 0.346751 | 7.4:+29651241 | None:intergenic |
| TTGGAATATAACACGGATAA+TGG | 0.354649 | 7.4:+29647798 | None:intergenic |
| CAGCTTAGTCTAACCTGAAT+AGG | 0.359538 | 7.4:+29647913 | None:intergenic |
| ATATTTCTGGGAGTATTATT+CGG | 0.362777 | 7.4:-29652543 | MS.gene96051:CDS |
| ACAGGGAAAGATATCCATTC+AGG | 0.383895 | 7.4:+29651197 | None:intergenic |
| ATTATTCGGCGTAGCATTGA+TGG | 0.390520 | 7.4:-29652529 | MS.gene96051:CDS |
| GGAAGTTTGACGGCACTTCC+TGG | 0.392579 | 7.4:-29647140 | MS.gene96051:CDS |
| TCAGTAGTTGGTTCTGGTGC+TGG | 0.393526 | 7.4:-29645301 | MS.gene96051:CDS |
| GGAATTGTTGGCAGTGGGCT+TGG | 0.394317 | 7.4:-29645181 | MS.gene96051:CDS |
| CATCGGATTGTTGTTCCACT+TGG | 0.398534 | 7.4:-29646961 | MS.gene96051:CDS |
| AAACCTCGACAGTGAGTGAT+TGG | 0.400951 | 7.4:+29646432 | None:intergenic |
| CTAAAGAATATGGAAATGAT+TGG | 0.409580 | 7.4:-29646581 | MS.gene96051:CDS |
| GCAGCATCAGTAGTTGGTTC+TGG | 0.412024 | 7.4:-29645307 | MS.gene96051:CDS |
| AGGCACACCTGCTCATATAC+AGG | 0.414272 | 7.4:+29651179 | None:intergenic |
| GGTGCTGGACTCGTTGGAAC+TGG | 0.416389 | 7.4:-29645286 | MS.gene96051:CDS |
| GTGTAATCAATTCTAGGCTT+TGG | 0.419916 | 7.4:+29647179 | None:intergenic |
| AGTGGAATTGGTGCTGGAGC+TGG | 0.421440 | 7.4:-29645235 | MS.gene96051:CDS |
| ATACCTTTGCAATTCTCTTA+CGG | 0.426909 | 7.4:+29652475 | None:intergenic |
| ACTGGAATCGGCGCTGGAGC+TGG | 0.428890 | 7.4:-29645268 | MS.gene96051:CDS |
| GCTTCAGTTGAAGGATCTCC+AGG | 0.430591 | 7.4:-29647827 | MS.gene96051:intron |
| GGAGCTGGAATTGTTGGCAG+TGG | 0.438232 | 7.4:-29645187 | MS.gene96051:CDS |
| GGGCTTGGTGCCGTTGGCAG+TGG | 0.438797 | 7.4:-29645166 | MS.gene96051:CDS |
| GGAATGGTGGGAAGTGGAAT+TGG | 0.440702 | 7.4:-29645247 | MS.gene96051:CDS |
| TCGAGGAACCTTGAGAATAA+AGG | 0.442200 | 7.4:-29645731 | MS.gene96051:intron |
| AGTGGATTCGGTGCTGGAGC+TGG | 0.442751 | 7.4:-29645202 | MS.gene96051:CDS |
| GGAATGGTGGGAAGTGGATT+CGG | 0.455276 | 7.4:-29645214 | MS.gene96051:CDS |
| CGGATTGTTGTTCCACTTGG+TGG | 0.456780 | 7.4:-29646958 | MS.gene96051:CDS |
| AACTTCAACGAAGAAATTCC+AGG | 0.459075 | 7.4:+29649313 | None:intergenic |
| CAGTCACTTTAAGTATTCCC+TGG | 0.459434 | 7.4:+29646621 | None:intergenic |
| GCAGTTGACGTTAAACTCCT+TGG | 0.462122 | 7.4:-29651266 | MS.gene96051:CDS |
| CTTGAATCCAATTTGGAATG+AGG | 0.464090 | 7.4:-29646486 | MS.gene96051:CDS |
| GTCCAAGTTGTGGCCATTTG+TGG | 0.464860 | 7.4:-29650904 | MS.gene96051:CDS |
| GGCAGTGGACTGAGCAAGGC+AGG | 0.466321 | 7.4:-29645151 | MS.gene96051:CDS |
| AATGGACATTGATTTCCGTT+GGG | 0.469120 | 7.4:-29647986 | MS.gene96051:CDS |
| TAATGGACATTGATTTCCGT+TGG | 0.470814 | 7.4:-29647987 | MS.gene96051:CDS |
| AATTGGTGCTGGAGCTGGAA+TGG | 0.471647 | 7.4:-29645230 | MS.gene96051:CDS |
| TGCCACAAATGGCCACAACT+TGG | 0.473030 | 7.4:+29650902 | None:intergenic |
| CACGGATAATGGTGAAAACC+TGG | 0.473508 | 7.4:+29647809 | None:intergenic |
| TTAGAAGAGTATAGACCTCC+TGG | 0.475646 | 7.4:-29649331 | MS.gene96051:CDS |
| GTTGGAACTGGAATCGGCGC+TGG | 0.475798 | 7.4:-29645274 | MS.gene96051:CDS |
| TAAAGAATATGGAAATGATT+GGG | 0.477054 | 7.4:-29646580 | MS.gene96051:CDS |
| GGCAGTTGGCGGAAGTTTGA+CGG | 0.479540 | 7.4:-29647150 | MS.gene96051:CDS |
| TTCATGGGCAGGACAATCAC+AGG | 0.480614 | 7.4:-29645124 | MS.gene96051:CDS |
| TCTGCTTCCACGTTAATAAG+TGG | 0.480823 | 7.4:+29645823 | None:intergenic |
| GAGCTGGAATTGTTGGCAGT+GGG | 0.481909 | 7.4:-29645186 | MS.gene96051:CDS |
| TATTTATACCTTTATTCTCA+AGG | 0.481933 | 7.4:+29645723 | None:intergenic |
| GGTGCTGGAGCTGGAATTGT+TGG | 0.485490 | 7.4:-29645193 | MS.gene96051:CDS |
| GTGGGAAGTGGATTCGGTGC+TGG | 0.485823 | 7.4:-29645208 | MS.gene96051:CDS |
| GGCAGTGGGCTTGGTGCCGT+TGG | 0.486406 | 7.4:-29645172 | MS.gene96051:CDS |
| TCTTTAATGTGGAGGAAAGT+GGG | 0.487364 | 7.4:-29645057 | MS.gene96051:CDS |
| ATCTTTCCCTGTATATGAGC+AGG | 0.487917 | 7.4:-29651186 | MS.gene96051:intron |
| GAGCAAGGCAGGAAAGTTCA+TGG | 0.488649 | 7.4:-29645140 | MS.gene96051:CDS |
| GGACTCGTTGGAACTGGAAT+CGG | 0.491658 | 7.4:-29645280 | MS.gene96051:CDS |
| AGTCACTTTAAGTATTCCCT+GGG | 0.492552 | 7.4:+29646622 | None:intergenic |
| ATCTACTCCTGTCTTTAATG+TGG | 0.492962 | 7.4:-29645068 | MS.gene96051:CDS |
| ATTGAAAGTAAAAGATAAGA+AGG | 0.493082 | 7.4:-29645755 | MS.gene96051:CDS |
| GTGGGAAGTGGAATTGGTGC+TGG | 0.493539 | 7.4:-29645241 | MS.gene96051:CDS |
| GTCTTTAATGTGGAGGAAAG+TGG | 0.495600 | 7.4:-29645058 | MS.gene96051:CDS |
| GTGGTACTCCTGTGGATACT+AGG | 0.497141 | 7.4:-29646939 | MS.gene96051:intron |
| CGAATATGCACAACTACGTA+AGG | 0.497415 | 7.4:+29646548 | None:intergenic |
| AATCGGCGCTGGAGCTGGAA+TGG | 0.499597 | 7.4:-29645263 | MS.gene96051:CDS |
| GTGGTGAAAATTTACCTGAA+TGG | 0.501192 | 7.4:-29651211 | MS.gene96051:CDS |
| GCGTAGCATTGATGGCTGGA+TGG | 0.502557 | 7.4:-29652521 | MS.gene96051:CDS |
| GACGGAGCAGCATCAGTAGT+TGG | 0.508775 | 7.4:-29645313 | MS.gene96051:CDS |
| TTACTCACATCTGCCACAAA+TGG | 0.509266 | 7.4:+29650891 | None:intergenic |
| CAACAATCCGATGAGGCCAT+TGG | 0.515146 | 7.4:+29646971 | None:intergenic |
| GGAGCTGGAATGGTGGGAAG+TGG | 0.515418 | 7.4:-29645220 | MS.gene96051:CDS |
| GGAGCTGGAATGGTGGGAAG+TGG | 0.515418 | 7.4:-29645253 | MS.gene96051:CDS |
| ATGAGGCCATTGGAGCATAT+CGG | 0.516196 | 7.4:+29646981 | None:intergenic |
| CGTGGAAGCAGAAACTGAAA+AGG | 0.516842 | 7.4:-29645812 | MS.gene96051:CDS |
| AAAGGTTACCTCAGCAAGTA+GGG | 0.517219 | 7.4:+29647735 | None:intergenic |
| CAAAGGTTACCTCAGCAAGT+AGG | 0.517568 | 7.4:+29647734 | None:intergenic |
| AAGTTCAGTAAGCTGTCCCT+TGG | 0.527726 | 7.4:-29649295 | MS.gene96051:CDS |
| GGCGCTGGAGCTGGAATGGT+GGG | 0.527757 | 7.4:-29645259 | MS.gene96051:CDS |
| GGTTCTGGTGCTGGACTCGT+TGG | 0.530249 | 7.4:-29645292 | MS.gene96051:CDS |
| ATATGCTCCAATGGCCTCAT+CGG | 0.533627 | 7.4:-29646978 | MS.gene96051:CDS |
| CGTAGCATTGATGGCTGGAT+GGG | 0.533942 | 7.4:-29652520 | MS.gene96051:CDS |
| TTCGGCGTAGCATTGATGGC+TGG | 0.540151 | 7.4:-29652525 | MS.gene96051:CDS |
| TGATCTGGAGCTTAAACCCC+AGG | 0.542723 | 7.4:-29646639 | MS.gene96051:CDS |
| CGGCGCTGGAGCTGGAATGG+TGG | 0.546378 | 7.4:-29645260 | MS.gene96051:CDS |
| AACCTCGACAGTGAGTGATT+GGG | 0.548907 | 7.4:+29646433 | None:intergenic |
| CGTTGGCAGTGGACTGAGCA+AGG | 0.551865 | 7.4:-29645155 | MS.gene96051:CDS |
| CGACTTGATTGCAGAAGACA+AGG | 0.553113 | 7.4:-29646459 | MS.gene96051:CDS |
| ATTGGGCAAGATAAACGATT+GGG | 0.553397 | 7.4:-29645859 | MS.gene96051:CDS |
| AGGCAGGAAAGTTCATGGGC+AGG | 0.553405 | 7.4:-29645135 | MS.gene96051:CDS |
| GATTACACTCTGAAGGCAGT+TGG | 0.555212 | 7.4:-29647164 | MS.gene96051:CDS |
| CTTTCCTCCACATTAAAGAC+AGG | 0.556324 | 7.4:+29645061 | None:intergenic |
| TAGAATTGATTACACTCTGA+AGG | 0.557093 | 7.4:-29647171 | MS.gene96051:CDS |
| TCCACTTGGTGGTACTCCTG+TGG | 0.560366 | 7.4:-29646947 | MS.gene96051:CDS |
| AGGAAGAAACTGAAAGAGGA+AGG | 0.561072 | 7.4:-29645364 | MS.gene96051:CDS |
| AAGGGATCTCTTCTGCGAGT+TGG | 0.564915 | 7.4:+29647779 | None:intergenic |
| TACACTCTGAAGGCAGTTGG+CGG | 0.565095 | 7.4:-29647161 | MS.gene96051:CDS |
| ATGGACATTGATTTCCGTTG+GGG | 0.568773 | 7.4:-29647985 | MS.gene96051:CDS |
| TACTCCTGTCTTTAATGTGG+AGG | 0.574175 | 7.4:-29645065 | MS.gene96051:CDS |
| CATTGGGCAAGATAAACGAT+TGG | 0.574761 | 7.4:-29645860 | MS.gene96051:CDS |
| CGTCTCTATTAAGGGATCCA+AGG | 0.577189 | 7.4:+29651249 | None:intergenic |
| ACAAGCAGCTGTCCAAGTTG+TGG | 0.582444 | 7.4:-29650914 | MS.gene96051:CDS |
| AGAAAATGACACTAGAACAA+AGG | 0.582456 | 7.4:-29645384 | MS.gene96051:CDS |
| TGTTGTTGCCCTACTTGCTG+AGG | 0.583278 | 7.4:-29647743 | MS.gene96051:intron |
| TCAATCATATCTGAAAGTCC+AGG | 0.587718 | 7.4:+29647122 | None:intergenic |
| TTGTTACCGATATGCTCCAA+TGG | 0.587786 | 7.4:-29646987 | MS.gene96051:CDS |
| GACATTGATTTCCGTTGGGG+TGG | 0.590508 | 7.4:-29647982 | MS.gene96051:CDS |
| ACAAAGGAAGAAACTGAAAG+AGG | 0.591207 | 7.4:-29645368 | MS.gene96051:CDS |
| ATTTAACAAGGAAGAACAGA+TGG | 0.593114 | 7.4:-29645422 | MS.gene96051:CDS |
| GGTGCTGGAGCTGGAATGGT+GGG | 0.593307 | 7.4:-29645226 | MS.gene96051:CDS |
| AGCAAGGCAGGAAAGTTCAT+GGG | 0.593411 | 7.4:-29645139 | MS.gene96051:CDS |
| CTTGCTCAGTCCACTGCCAA+CGG | 0.593603 | 7.4:+29645156 | None:intergenic |
| GACAGGAGTAGATGAACCGC+TGG | 0.594016 | 7.4:+29645078 | None:intergenic |
| TGGTGCTGGAGCTGGAATGG+TGG | 0.595978 | 7.4:-29645227 | MS.gene96051:CDS |
| CTTTAATGTGGAGGAAAGTG+GGG | 0.602558 | 7.4:-29645056 | MS.gene96051:CDS |
| CTGCGAGTTGGAATATAACA+CGG | 0.615766 | 7.4:+29647791 | None:intergenic |
| AGTACAATGGACGCGCTAGA+CGG | 0.619163 | 7.4:-29645331 | MS.gene96051:CDS |
| AGGAGTTATTGGAAGTACAA+TGG | 0.624734 | 7.4:-29645344 | MS.gene96051:CDS |
| CAGGGCAAACTGTATCGAGA+AGG | 0.626227 | 7.4:-29645105 | MS.gene96051:CDS |
| TCACACTACCTAGTATCCAC+AGG | 0.626835 | 7.4:+29646931 | None:intergenic |
| GACGACTTAAAGAAAATCTG+TGG | 0.628230 | 7.4:-29651230 | MS.gene96051:CDS |
| ACAACAACAGCAGAAATGCA+AGG | 0.628716 | 7.4:+29647760 | None:intergenic |
| GTAAAAGATAAGAAGGATCG+AGG | 0.631810 | 7.4:-29645748 | MS.gene96051:CDS |
| TTTAATGTGGAGGAAAGTGG+GGG | 0.634849 | 7.4:-29645055 | MS.gene96051:CDS |
| GACCCAATCACTCACTGTCG+AGG | 0.635610 | 7.4:-29646435 | MS.gene96051:intron |
| GGTCTATACTCTTCTAATAG+CGG | 0.643171 | 7.4:+29649337 | None:intergenic |
| CAACAACAGCAGAAATGCAA+GGG | 0.643698 | 7.4:+29647761 | None:intergenic |
| ACTCTTTAAAGTCAAAACAA+AGG | 0.644094 | 7.4:-29646522 | MS.gene96051:CDS |
| TTTCTATCATGAATTTAACA+AGG | 0.648565 | 7.4:-29645434 | MS.gene96051:CDS |
| AAGCCGTAAGAGAATTGCAA+AGG | 0.648972 | 7.4:-29652478 | MS.gene96051:intron |
| CTGAAAAGGAAATTGAACTG+AGG | 0.654965 | 7.4:-29645798 | MS.gene96051:CDS |
| TATTAGGATCACCACCCCAA+CGG | 0.666944 | 7.4:+29647971 | None:intergenic |
| TCCACAGGAGTACCACCAAG+TGG | 0.679811 | 7.4:+29646946 | None:intergenic |
| GAATATGCACAACTACGTAA+GGG | 0.686841 | 7.4:+29646549 | None:intergenic |
| GGCACACCTGCTCATATACA+GGG | 0.691019 | 7.4:+29651180 | None:intergenic |
| AAAATTGCCACTTATTAACG+TGG | 0.700041 | 7.4:-29645830 | MS.gene96051:CDS |
| GTATCGAGAAGGAGTGCCAG+CGG | 0.703865 | 7.4:-29645094 | MS.gene96051:CDS |
| GTCACTTTAAGTATTCCCTG+GGG | 0.708077 | 7.4:+29646623 | None:intergenic |
| GATCTGGAGCTTAAACCCCA+GGG | 0.715206 | 7.4:-29646638 | MS.gene96051:CDS |
| TCATGGGCAGGACAATCACA+GGG | 0.718450 | 7.4:-29645123 | MS.gene96051:CDS |
| AGTGGAACAACAATCCGATG+AGG | 0.732800 | 7.4:+29646964 | None:intergenic |
| TTCAACGAAGAAATTCCAGG+AGG | 0.772265 | 7.4:+29649316 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 29645036 | 29652583 | 29645036 | ID=MS.gene96051 |
| chr7.4 | mRNA | 29645036 | 29652583 | 29645036 | ID=MS.gene96051.t1;Parent=MS.gene96051 |
| chr7.4 | exon | 29652479 | 29652583 | 29652479 | ID=MS.gene96051.t1.exon1;Parent=MS.gene96051.t1 |
| chr7.4 | CDS | 29652479 | 29652583 | 29652479 | ID=cds.MS.gene96051.t1;Parent=MS.gene96051.t1 |
| chr7.4 | exon | 29651187 | 29651288 | 29651187 | ID=MS.gene96051.t1.exon2;Parent=MS.gene96051.t1 |
| chr7.4 | CDS | 29651187 | 29651288 | 29651187 | ID=cds.MS.gene96051.t1;Parent=MS.gene96051.t1 |
| chr7.4 | exon | 29650899 | 29650949 | 29650899 | ID=MS.gene96051.t1.exon3;Parent=MS.gene96051.t1 |
| chr7.4 | CDS | 29650899 | 29650949 | 29650899 | ID=cds.MS.gene96051.t1;Parent=MS.gene96051.t1 |
| chr7.4 | exon | 29649272 | 29649392 | 29649272 | ID=MS.gene96051.t1.exon4;Parent=MS.gene96051.t1 |
| chr7.4 | CDS | 29649272 | 29649392 | 29649272 | ID=cds.MS.gene96051.t1;Parent=MS.gene96051.t1 |
| chr7.4 | exon | 29647927 | 29648045 | 29647927 | ID=MS.gene96051.t1.exon5;Parent=MS.gene96051.t1 |
| chr7.4 | CDS | 29647927 | 29648045 | 29647927 | ID=cds.MS.gene96051.t1;Parent=MS.gene96051.t1 |
| chr7.4 | exon | 29647744 | 29647842 | 29647744 | ID=MS.gene96051.t1.exon6;Parent=MS.gene96051.t1 |
| chr7.4 | CDS | 29647744 | 29647842 | 29647744 | ID=cds.MS.gene96051.t1;Parent=MS.gene96051.t1 |
| chr7.4 | exon | 29647121 | 29647201 | 29647121 | ID=MS.gene96051.t1.exon7;Parent=MS.gene96051.t1 |
| chr7.4 | CDS | 29647121 | 29647201 | 29647121 | ID=cds.MS.gene96051.t1;Parent=MS.gene96051.t1 |
| chr7.4 | exon | 29646940 | 29647025 | 29646940 | ID=MS.gene96051.t1.exon8;Parent=MS.gene96051.t1 |
| chr7.4 | CDS | 29646940 | 29647025 | 29646940 | ID=cds.MS.gene96051.t1;Parent=MS.gene96051.t1 |
| chr7.4 | exon | 29646436 | 29646661 | 29646436 | ID=MS.gene96051.t1.exon9;Parent=MS.gene96051.t1 |
| chr7.4 | CDS | 29646436 | 29646661 | 29646436 | ID=cds.MS.gene96051.t1;Parent=MS.gene96051.t1 |
| chr7.4 | exon | 29645732 | 29645896 | 29645732 | ID=MS.gene96051.t1.exon10;Parent=MS.gene96051.t1 |
| chr7.4 | CDS | 29645732 | 29645896 | 29645732 | ID=cds.MS.gene96051.t1;Parent=MS.gene96051.t1 |
| chr7.4 | exon | 29645036 | 29645458 | 29645036 | ID=MS.gene96051.t1.exon11;Parent=MS.gene96051.t1 |
| chr7.4 | CDS | 29645036 | 29645458 | 29645036 | ID=cds.MS.gene96051.t1;Parent=MS.gene96051.t1 |
| Gene Sequence |
| Protein sequence |
