Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene96108.t1 | XP_013455729.1 | 97 | 395 | 12 | 0 | 1 | 395 | 19 | 413 | 1.70E-212 | 748.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene96108.t1 | Q9SF15 | 35.3 | 434 | 228 | 9 | 1 | 392 | 23 | 445 | 6.7e-61 | 236.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene96108.t1 | A0A072UV60 | 97.0 | 395 | 12 | 0 | 1 | 395 | 19 | 413 | 1.2e-212 | 748.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene055549 | MS.gene96108 | 0.802695 | 4.97E-49 | -1.69E-46 |
MS.gene055550 | MS.gene96108 | 0.801139 | 1.04E-48 | -1.69E-46 |
MS.gene055551 | MS.gene96108 | 0.828639 | 8.04E-55 | -1.69E-46 |
MS.gene056530 | MS.gene96108 | 0.80325 | 3.81E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene96108.t1 | MTR_4g051515 | 96.962 | 395 | 12 | 0 | 1 | 395 | 19 | 413 | 0.0 | 789 |
MS.gene96108.t1 | MTR_1g056910 | 43.928 | 387 | 208 | 7 | 1 | 385 | 19 | 398 | 2.84e-101 | 306 |
MS.gene96108.t1 | MTR_1g056870 | 37.530 | 421 | 228 | 8 | 1 | 393 | 20 | 433 | 3.14e-86 | 269 |
MS.gene96108.t1 | MTR_1g056880 | 37.292 | 421 | 229 | 8 | 1 | 393 | 20 | 433 | 1.34e-85 | 267 |
MS.gene96108.t1 | MTR_7g106340 | 38.821 | 407 | 225 | 8 | 1 | 393 | 21 | 417 | 1.44e-84 | 264 |
MS.gene96108.t1 | MTR_6g462610 | 64.455 | 211 | 32 | 2 | 99 | 309 | 1 | 168 | 4.55e-84 | 254 |
MS.gene96108.t1 | MTR_1g036770 | 77.632 | 152 | 24 | 1 | 99 | 250 | 1 | 142 | 7.42e-76 | 232 |
MS.gene96108.t1 | MTR_2g087350 | 38.131 | 396 | 230 | 8 | 1 | 393 | 19 | 402 | 7.91e-74 | 236 |
MS.gene96108.t1 | MTR_0006s0210 | 78.231 | 147 | 22 | 1 | 99 | 245 | 1 | 137 | 3.44e-72 | 223 |
MS.gene96108.t1 | MTR_1g056840 | 34.204 | 421 | 216 | 10 | 1 | 393 | 20 | 407 | 5.50e-68 | 221 |
MS.gene96108.t1 | MTR_1g037060 | 82.243 | 107 | 18 | 1 | 99 | 205 | 1 | 106 | 2.55e-52 | 170 |
MS.gene96108.t1 | MTR_1g037070 | 72.840 | 81 | 22 | 0 | 257 | 337 | 1 | 81 | 8.11e-34 | 121 |
MS.gene96108.t1 | MTR_5g077510 | 27.456 | 397 | 262 | 14 | 1 | 386 | 48 | 429 | 4.08e-28 | 115 |
MS.gene96108.t1 | MTR_3g065080 | 25.313 | 399 | 267 | 12 | 1 | 386 | 49 | 429 | 7.26e-27 | 111 |
MS.gene96108.t1 | MTR_6g071340 | 25.127 | 394 | 259 | 15 | 1 | 374 | 18 | 395 | 4.05e-24 | 103 |
MS.gene96108.t1 | MTR_8g092870 | 26.139 | 417 | 248 | 15 | 1 | 388 | 23 | 408 | 5.54e-22 | 97.4 |
MS.gene96108.t1 | MTR_5g048050 | 25.193 | 389 | 265 | 14 | 1 | 374 | 38 | 415 | 7.24e-22 | 97.1 |
MS.gene96108.t1 | MTR_4g085720 | 26.633 | 398 | 242 | 14 | 1 | 379 | 27 | 393 | 9.72e-22 | 96.7 |
MS.gene96108.t1 | MTR_3g095730 | 25.806 | 403 | 265 | 17 | 1 | 388 | 26 | 409 | 3.18e-19 | 89.4 |
MS.gene96108.t1 | MTR_5g015210 | 22.306 | 399 | 273 | 11 | 1 | 392 | 80 | 448 | 8.94e-14 | 72.8 |
MS.gene96108.t1 | MTR_4g091880 | 24.031 | 387 | 242 | 13 | 1 | 374 | 18 | 365 | 7.03e-12 | 66.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene96108.t1 | AT3G11840 | 35.253 | 434 | 228 | 9 | 1 | 392 | 23 | 445 | 2.71e-75 | 241 |
MS.gene96108.t1 | AT2G35930 | 34.704 | 389 | 238 | 8 | 1 | 385 | 25 | 401 | 2.21e-71 | 229 |
MS.gene96108.t1 | AT3G52450 | 33.253 | 415 | 238 | 9 | 1 | 385 | 20 | 425 | 2.11e-65 | 215 |
MS.gene96108.t1 | AT3G19380 | 25.532 | 376 | 243 | 11 | 1 | 360 | 27 | 381 | 1.58e-25 | 107 |
MS.gene96108.t1 | AT1G66160 | 26.768 | 396 | 230 | 14 | 1 | 374 | 46 | 403 | 1.07e-23 | 102 |
MS.gene96108.t1 | AT1G49780 | 26.185 | 401 | 263 | 10 | 1 | 386 | 27 | 409 | 1.15e-22 | 99.4 |
MS.gene96108.t1 | AT5G37490 | 25.128 | 390 | 259 | 12 | 1 | 377 | 44 | 413 | 2.90e-17 | 83.6 |
MS.gene96108.t1 | AT1G66160 | 25.341 | 367 | 215 | 13 | 30 | 374 | 58 | 387 | 2.88e-15 | 77.4 |
MS.gene96108.t1 | AT5G09800 | 22.983 | 409 | 261 | 16 | 1 | 388 | 24 | 399 | 3.73e-15 | 77.0 |
MS.gene96108.t1 | AT3G18710 | 26.835 | 395 | 243 | 15 | 1 | 374 | 25 | 394 | 4.12e-15 | 77.0 |
MS.gene96108.t1 | AT5G64660 | 22.963 | 405 | 278 | 13 | 1 | 388 | 23 | 410 | 2.02e-13 | 71.6 |
MS.gene96108.t1 | AT3G02840 | 21.988 | 332 | 210 | 8 | 69 | 373 | 42 | 351 | 3.78e-11 | 64.7 |
MS.gene96108.t1 | AT3G46510 | 26.129 | 310 | 187 | 14 | 1 | 295 | 269 | 551 | 5.85e-11 | 64.7 |
Find 65 sgRNAs with CRISPR-Local
Find 77 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TACCGGACACACACAAATTT+TGG | 0.165373 | 4.2:-50983560 | None:intergenic |
ATTCTATTGAGAGGAGATTT+TGG | 0.189995 | 4.2:-50983703 | None:intergenic |
CAATGTTTAAATTTCCTAAA+AGG | 0.218436 | 4.2:-50984110 | None:intergenic |
CGCTGATTTAATAGCTTGTT+TGG | 0.241169 | 4.2:-50984181 | None:intergenic |
AGAGCTCGTGTTCAATCTTT+TGG | 0.292121 | 4.2:+50984320 | MS.gene96108:CDS |
TCAATTGTCAACTTTAATAA+TGG | 0.293900 | 4.2:-50984072 | None:intergenic |
AACTTATATTTGATCACCTT+TGG | 0.332063 | 4.2:-50984665 | None:intergenic |
TTGCATTACCATGCAAAGTT+TGG | 0.341146 | 4.2:-50984535 | None:intergenic |
GTCAAATACTCTGAACTTCT+TGG | 0.362730 | 4.2:-50983598 | None:intergenic |
GGTAGTGATTGATTTGTTAC+CGG | 0.384736 | 4.2:-50983577 | None:intergenic |
ATTTACCATCTCAAAATTGT+TGG | 0.385880 | 4.2:-50984040 | None:intergenic |
ATTGATGCTTGAAAGCGATT+AGG | 0.397843 | 4.2:-50983760 | None:intergenic |
AGCCTTTGAAGTGTGTGATT+TGG | 0.399496 | 4.2:-50983622 | None:intergenic |
AATACCAATGGTTTAGAAGA+AGG | 0.409053 | 4.2:+50983895 | MS.gene96108:CDS |
AAGCTCAAGTTCAATGAGTT+CGG | 0.423341 | 4.2:-50984274 | None:intergenic |
CAAACCTTCTTCTAAACCAT+TGG | 0.423496 | 4.2:-50983899 | None:intergenic |
TTAGGTTACACTCCACTACT+TGG | 0.430565 | 4.2:+50984601 | MS.gene96108:CDS |
TGTAACAAAGGCTATGGTTA+TGG | 0.436007 | 4.2:+50983846 | MS.gene96108:CDS |
ATGCCTGTCACTGTTGTCAC+TGG | 0.437850 | 4.2:-50983496 | None:intergenic |
CCGCTTCCACGATCTTTGTT+CGG | 0.442234 | 4.2:-50984242 | None:intergenic |
CTTATAGAGACGTGCCCGTT+GGG | 0.444499 | 4.2:+50984213 | MS.gene96108:CDS |
AGCTCTGTCACATTCTTCTC+CGG | 0.450590 | 4.2:-50984303 | None:intergenic |
CCGAACAAAGATCGTGGAAG+CGG | 0.454134 | 4.2:+50984242 | MS.gene96108:CDS |
TAATCGCTTTCAAGCATCAA+TGG | 0.456361 | 4.2:+50983762 | MS.gene96108:CDS |
AATTGCTAGGTCATCGGTTG+TGG | 0.459481 | 4.2:-50984436 | None:intergenic |
ATTTCATCAACTCGTTGACT+TGG | 0.464491 | 4.2:+50983995 | MS.gene96108:CDS |
CATTGAATTCTTTGTAACAA+TGG | 0.474952 | 4.2:+50984128 | MS.gene96108:CDS |
CATTTGTGTTCGTGCGCGGA+TGG | 0.475091 | 4.2:+50984345 | MS.gene96108:CDS |
GTTAGAGTACTTAGAAAGAG+AGG | 0.479397 | 4.2:+50984150 | MS.gene96108:CDS |
CAACAACATGATGAAGCCTT+TGG | 0.491566 | 4.2:+50983957 | MS.gene96108:CDS |
AGAATATGCATGGTTGAAGT+AGG | 0.501528 | 4.2:+50983823 | MS.gene96108:CDS |
TTGTTCGGTTTCTACCCAAC+GGG | 0.504938 | 4.2:-50984227 | None:intergenic |
AGAAAGCAAGAGACATACTT+AGG | 0.507558 | 4.2:+50984583 | MS.gene96108:CDS |
AACTTGATTATCAACCACCT+TGG | 0.511472 | 4.2:-50983674 | None:intergenic |
AACATGATGAAGCCTTTGGT+TGG | 0.517108 | 4.2:+50983961 | MS.gene96108:CDS |
AGCCAAAATTTGTGTGTGTC+CGG | 0.517453 | 4.2:+50983558 | MS.gene96108:CDS |
GAACCAGTGACAACAGTGAC+AGG | 0.520011 | 4.2:+50983493 | MS.gene96108:CDS |
CAATTCATGAGGCATGGAGC+GGG | 0.541202 | 4.2:+50984375 | MS.gene96108:CDS |
CTCCAAATCACACACTTCAA+AGG | 0.542946 | 4.2:+50983620 | MS.gene96108:CDS |
AACAAGTACAATTGTATGCA+TGG | 0.543793 | 4.2:-50984633 | None:intergenic |
AGCGGTTTCCAAACTTTGCA+TGG | 0.544705 | 4.2:+50984527 | MS.gene96108:CDS |
TTTGTTCGGTTTCTACCCAA+CGG | 0.552342 | 4.2:-50984228 | None:intergenic |
AGTAGGTGTAACAAAGGCTA+TGG | 0.555604 | 4.2:+50983840 | MS.gene96108:CDS |
TACTTGAATTGCTAGGTCAT+CGG | 0.558000 | 4.2:-50984442 | None:intergenic |
CTGAAAGTACTTGAATTGCT+AGG | 0.561724 | 4.2:-50984449 | None:intergenic |
AGAGAACAATTCATGAGGCA+TGG | 0.562315 | 4.2:+50984369 | MS.gene96108:CDS |
TGGAGAATTATTCCAAGTAG+TGG | 0.564996 | 4.2:-50984613 | None:intergenic |
TTCAAAGAAGGAAATACCAA+TGG | 0.571012 | 4.2:+50983883 | MS.gene96108:CDS |
CGAACAAAGATCGTGGAAGC+GGG | 0.572107 | 4.2:+50984243 | MS.gene96108:CDS |
TGAGAGAAATAGAATATGCA+TGG | 0.578775 | 4.2:+50983813 | MS.gene96108:CDS |
AAAGTTGACAATTGATGTTG+TGG | 0.586908 | 4.2:+50984080 | MS.gene96108:CDS |
GCTTATAGAGACGTGCCCGT+TGG | 0.587121 | 4.2:+50984212 | MS.gene96108:CDS |
TGAAGATGGATTCTATTGAG+AGG | 0.589853 | 4.2:-50983712 | None:intergenic |
TACAATTGTACTTGTTAACA+AGG | 0.596131 | 4.2:+50984640 | MS.gene96108:CDS |
AGAGATGTTGCAAGTTGGAG+CGG | 0.596852 | 4.2:+50984509 | MS.gene96108:CDS |
ACTTGTTAACAAGGCACCAA+AGG | 0.603108 | 4.2:+50984649 | MS.gene96108:CDS |
GGCACATTTGTGTTCGTGCG+CGG | 0.603860 | 4.2:+50984341 | MS.gene96108:CDS |
TTCAAAGGCTAATCAGAGCA+TGG | 0.608580 | 4.2:+50983635 | MS.gene96108:CDS |
ACAAAGATCGTGGAAGCGGG+TGG | 0.627722 | 4.2:+50984246 | MS.gene96108:CDS |
ACAATTCATGAGGCATGGAG+CGG | 0.639945 | 4.2:+50984374 | MS.gene96108:CDS |
GGTTGAAGTAGGTGTAACAA+AGG | 0.648576 | 4.2:+50983834 | MS.gene96108:CDS |
TTTATCAAATGAATCCAAGG+TGG | 0.659261 | 4.2:+50983660 | MS.gene96108:CDS |
TAGAAACCGAACAAAGATCG+TGG | 0.661750 | 4.2:+50984236 | MS.gene96108:CDS |
GCATAGCGATGATTTCGAAG+AGG | 0.666881 | 4.2:+50984397 | MS.gene96108:CDS |
ATGGAAGAGAACAATTCATG+AGG | 0.672194 | 4.2:+50984364 | MS.gene96108:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTAAAAAGAAATTCAAAGA+AGG | + | chr4.2:50983871-50983890 | MS.gene96108:CDS | 15.0% |
!! | CAATGTTTAAATTTCCTAAA+AGG | - | chr4.2:50984113-50984132 | None:intergenic | 20.0% |
!! | TCAATTGTCAACTTTAATAA+TGG | - | chr4.2:50984075-50984094 | None:intergenic | 20.0% |
! | ATTTACCATCTCAAAATTGT+TGG | - | chr4.2:50984043-50984062 | None:intergenic | 25.0% |
! | CATTGAATTCTTTGTAACAA+TGG | + | chr4.2:50984128-50984147 | MS.gene96108:CDS | 25.0% |
!! | GATTTTATCAAATGAATCCA+AGG | + | chr4.2:50983657-50983676 | MS.gene96108:CDS | 25.0% |
!! | TACAATTGTACTTGTTAACA+AGG | + | chr4.2:50984640-50984659 | MS.gene96108:CDS | 25.0% |
!! | TGAAAATTATTCGTCTTTTG+TGG | + | chr4.2:50983920-50983939 | MS.gene96108:CDS | 25.0% |
!!! | ACAGAAAAAGCATTGAAAAA+TGG | + | chr4.2:50983527-50983546 | MS.gene96108:CDS | 25.0% |
AAAGTTGACAATTGATGTTG+TGG | + | chr4.2:50984080-50984099 | MS.gene96108:CDS | 30.0% | |
AACAAGTACAATTGTATGCA+TGG | - | chr4.2:50984636-50984655 | None:intergenic | 30.0% | |
AATACCAATGGTTTAGAAGA+AGG | + | chr4.2:50983895-50983914 | MS.gene96108:CDS | 30.0% | |
TGAGAGAAATAGAATATGCA+TGG | + | chr4.2:50983813-50983832 | MS.gene96108:CDS | 30.0% | |
TTCAAAGAAGGAAATACCAA+TGG | + | chr4.2:50983883-50983902 | MS.gene96108:CDS | 30.0% | |
TTTATCAAATGAATCCAAGG+TGG | + | chr4.2:50983660-50983679 | MS.gene96108:CDS | 30.0% | |
! | ATTCTATTGAGAGGAGATTT+TGG | - | chr4.2:50983706-50983725 | None:intergenic | 30.0% |
!! | TCTTGACAAGTTTTTGAAGA+TGG | - | chr4.2:50983729-50983748 | None:intergenic | 30.0% |
!! | TGATACCAACAATTTTGAGA+TGG | + | chr4.2:50984035-50984054 | MS.gene96108:CDS | 30.0% |
AACTTGATTATCAACCACCT+TGG | - | chr4.2:50983677-50983696 | None:intergenic | 35.0% | |
AAGCTCAAGTTCAATGAGTT+CGG | - | chr4.2:50984277-50984296 | None:intergenic | 35.0% | |
AGAAAGCAAGAGACATACTT+AGG | + | chr4.2:50984583-50984602 | MS.gene96108:CDS | 35.0% | |
AGAATATGCATGGTTGAAGT+AGG | + | chr4.2:50983823-50983842 | MS.gene96108:CDS | 35.0% | |
ATGGAAGAGAACAATTCATG+AGG | + | chr4.2:50984364-50984383 | MS.gene96108:CDS | 35.0% | |
ATTGATGCTTGAAAGCGATT+AGG | - | chr4.2:50983763-50983782 | None:intergenic | 35.0% | |
CAAACCTTCTTCTAAACCAT+TGG | - | chr4.2:50983902-50983921 | None:intergenic | 35.0% | |
GTCAAATACTCTGAACTTCT+TGG | - | chr4.2:50983601-50983620 | None:intergenic | 35.0% | |
TAATCGCTTTCAAGCATCAA+TGG | + | chr4.2:50983762-50983781 | MS.gene96108:CDS | 35.0% | |
TACTTGAATTGCTAGGTCAT+CGG | - | chr4.2:50984445-50984464 | None:intergenic | 35.0% | |
TGAACTTGAGCTTGAAAAAC+CGG | + | chr4.2:50984284-50984303 | MS.gene96108:CDS | 35.0% | |
TGGAGAATTATTCCAAGTAG+TGG | - | chr4.2:50984616-50984635 | None:intergenic | 35.0% | |
TGTAACAAAGGCTATGGTTA+TGG | + | chr4.2:50983846-50983865 | MS.gene96108:CDS | 35.0% | |
TTGCATTACCATGCAAAGTT+TGG | - | chr4.2:50984538-50984557 | None:intergenic | 35.0% | |
! | ATTTCATCAACTCGTTGACT+TGG | + | chr4.2:50983995-50984014 | MS.gene96108:CDS | 35.0% |
! | GATTTCGAAGAGGATTTTGA+GGG | + | chr4.2:50984407-50984426 | MS.gene96108:CDS | 35.0% |
! | GTTAGAGTACTTAGAAAGAG+AGG | + | chr4.2:50984150-50984169 | MS.gene96108:CDS | 35.0% |
! | GTTGTGGATTCAAACCTTTT+AGG | + | chr4.2:50984096-50984115 | MS.gene96108:CDS | 35.0% |
! | TGAAGATGGATTCTATTGAG+AGG | - | chr4.2:50983715-50983734 | None:intergenic | 35.0% |
! | TGATTTCGAAGAGGATTTTG+AGG | + | chr4.2:50984406-50984425 | MS.gene96108:CDS | 35.0% |
!! | CGCTGATTTAATAGCTTGTT+TGG | - | chr4.2:50984184-50984203 | None:intergenic | 35.0% |
!! | CTGAAAGTACTTGAATTGCT+AGG | - | chr4.2:50984452-50984471 | None:intergenic | 35.0% |
!! | GGTAGTGATTGATTTGTTAC+CGG | - | chr4.2:50983580-50983599 | None:intergenic | 35.0% |
!!! | GTTTTAGAGATGTTGCAAGT+TGG | + | chr4.2:50984504-50984523 | MS.gene96108:CDS | 35.0% |
!!! | TCCATGTTTTTTCCAACCAA+AGG | - | chr4.2:50983976-50983995 | None:intergenic | 35.0% |
AACATGATGAAGCCTTTGGT+TGG | + | chr4.2:50983961-50983980 | MS.gene96108:CDS | 40.0% | |
AGAGAACAATTCATGAGGCA+TGG | + | chr4.2:50984369-50984388 | MS.gene96108:CDS | 40.0% | |
AGCCAAAATTTGTGTGTGTC+CGG | + | chr4.2:50983558-50983577 | MS.gene96108:CDS | 40.0% | |
AGTAGGTGTAACAAAGGCTA+TGG | + | chr4.2:50983840-50983859 | MS.gene96108:CDS | 40.0% | |
CAACAACATGATGAAGCCTT+TGG | + | chr4.2:50983957-50983976 | MS.gene96108:CDS | 40.0% | |
CTCCAAATCACACACTTCAA+AGG | + | chr4.2:50983620-50983639 | MS.gene96108:CDS | 40.0% | |
GCCTTTGGTTGGAAAAAACA+TGG | + | chr4.2:50983972-50983991 | MS.gene96108:CDS | 40.0% | |
GGTTGAAGTAGGTGTAACAA+AGG | + | chr4.2:50983834-50983853 | MS.gene96108:CDS | 40.0% | |
TAGAAACCGAACAAAGATCG+TGG | + | chr4.2:50984236-50984255 | MS.gene96108:CDS | 40.0% | |
TTAGGTTACACTCCACTACT+TGG | + | chr4.2:50984601-50984620 | MS.gene96108:CDS | 40.0% | |
TTCAAAGGCTAATCAGAGCA+TGG | + | chr4.2:50983635-50983654 | MS.gene96108:CDS | 40.0% | |
TTTGTTCGGTTTCTACCCAA+CGG | - | chr4.2:50984231-50984250 | None:intergenic | 40.0% | |
! | ACTTGTTAACAAGGCACCAA+AGG | + | chr4.2:50984649-50984668 | MS.gene96108:CDS | 40.0% |
! | AGAGCTCGTGTTCAATCTTT+TGG | + | chr4.2:50984320-50984339 | MS.gene96108:CDS | 40.0% |
! | TACCGGACACACACAAATTT+TGG | - | chr4.2:50983563-50983582 | None:intergenic | 40.0% |
!! | AGCCTTTGAAGTGTGTGATT+TGG | - | chr4.2:50983625-50983644 | None:intergenic | 40.0% |
ACAATTCATGAGGCATGGAG+CGG | + | chr4.2:50984374-50984393 | MS.gene96108:CDS | 45.0% | |
AGCGGTTTCCAAACTTTGCA+TGG | + | chr4.2:50984527-50984546 | MS.gene96108:CDS | 45.0% | |
AGCTCTGTCACATTCTTCTC+CGG | - | chr4.2:50984306-50984325 | None:intergenic | 45.0% | |
GCATAGCGATGATTTCGAAG+AGG | + | chr4.2:50984397-50984416 | MS.gene96108:CDS | 45.0% | |
TTGTTCGGTTTCTACCCAAC+GGG | - | chr4.2:50984230-50984249 | None:intergenic | 45.0% | |
! | AATTGCTAGGTCATCGGTTG+TGG | - | chr4.2:50984439-50984458 | None:intergenic | 45.0% |
! | AGAGATGTTGCAAGTTGGAG+CGG | + | chr4.2:50984509-50984528 | MS.gene96108:CDS | 45.0% |
ATGCCTGTCACTGTTGTCAC+TGG | - | chr4.2:50983499-50983518 | None:intergenic | 50.0% | |
CAATTCATGAGGCATGGAGC+GGG | + | chr4.2:50984375-50984394 | MS.gene96108:CDS | 50.0% | |
CCGAACAAAGATCGTGGAAG+CGG | + | chr4.2:50984242-50984261 | MS.gene96108:CDS | 50.0% | |
CCGCTTCCACGATCTTTGTT+CGG | - | chr4.2:50984245-50984264 | None:intergenic | 50.0% | |
CGAACAAAGATCGTGGAAGC+GGG | + | chr4.2:50984243-50984262 | MS.gene96108:CDS | 50.0% | |
CTTATAGAGACGTGCCCGTT+GGG | + | chr4.2:50984213-50984232 | MS.gene96108:CDS | 50.0% | |
GAACCAGTGACAACAGTGAC+AGG | + | chr4.2:50983493-50983512 | MS.gene96108:CDS | 50.0% | |
ACAAAGATCGTGGAAGCGGG+TGG | + | chr4.2:50984246-50984265 | MS.gene96108:CDS | 55.0% | |
CATTTGTGTTCGTGCGCGGA+TGG | + | chr4.2:50984345-50984364 | MS.gene96108:CDS | 55.0% | |
GCTTATAGAGACGTGCCCGT+TGG | + | chr4.2:50984212-50984231 | MS.gene96108:CDS | 55.0% | |
GGCACATTTGTGTTCGTGCG+CGG | + | chr4.2:50984341-50984360 | MS.gene96108:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 50983487 | 50984674 | 50983487 | ID=MS.gene96108 |
chr4.2 | mRNA | 50983487 | 50984674 | 50983487 | ID=MS.gene96108.t1;Parent=MS.gene96108 |
chr4.2 | exon | 50983487 | 50984674 | 50983487 | ID=MS.gene96108.t1.exon1;Parent=MS.gene96108.t1 |
chr4.2 | CDS | 50983487 | 50984674 | 50983487 | ID=cds.MS.gene96108.t1;Parent=MS.gene96108.t1 |
Gene Sequence |
Protein sequence |