AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene96164

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96164.t1 MTR_8g043650 91.983 237 19 0 1 237 1 237 2.26e-164 453
MS.gene96164.t1 MTR_1g105910 89.778 225 23 0 1 225 1 225 9.16e-151 419
MS.gene96164.t1 MTR_1g105920 89.041 219 24 0 1 219 1 219 2.04e-147 410
MS.gene96164.t1 MTR_1g012570 89.451 237 25 0 1 237 1 237 8.96e-146 406
MS.gene96164.t1 MTR_2g030740 85.232 237 35 0 1 237 1 237 5.18e-142 397
MS.gene96164.t1 MTR_3g052920 84.018 219 35 0 1 219 1 219 5.29e-138 387
MS.gene96164.t1 MTR_1g105905 81.818 220 40 0 18 237 1 220 1.76e-133 375
MS.gene96164.t1 MTR_3g052870 77.626 219 30 1 1 219 1 200 3.14e-120 341
MS.gene96164.t1 MTR_3g030770 71.915 235 48 3 1 225 1 227 1.60e-117 335
MS.gene96164.t1 MTR_5g055100 67.089 237 78 0 1 237 1 237 2.21e-117 335
MS.gene96164.t1 MTR_0121s0080 69.620 237 71 1 1 237 1 236 2.46e-117 335
MS.gene96164.t1 MTR_1g108510 71.915 235 48 3 1 225 1 227 1.99e-116 332
MS.gene96164.t1 MTR_2g085280 66.525 236 79 0 1 236 1 236 1.48e-115 330
MS.gene96164.t1 MTR_1g106070 85.165 182 27 0 1 182 1 182 3.80e-115 327
MS.gene96164.t1 MTR_2g085250 66.525 236 79 0 1 236 1 236 3.80e-115 329
MS.gene96164.t1 MTR_1g077360 68.889 225 70 0 1 225 1 225 5.66e-113 323
MS.gene96164.t1 MTR_2g093190 70.638 235 51 3 1 225 1 227 8.63e-113 323
MS.gene96164.t1 MTR_5g045560 69.198 237 73 0 1 237 1 237 5.90e-112 321
MS.gene96164.t1 MTR_1g075600 68.889 225 70 0 1 225 1 225 9.44e-112 320
MS.gene96164.t1 MTR_1g108580 69.787 235 53 3 1 225 1 227 1.79e-111 319
MS.gene96164.t1 MTR_5g053390 67.111 225 74 0 1 225 1 225 3.42e-107 309
MS.gene96164.t1 MTR_7g062350 63.677 223 79 2 16 237 27 248 9.87e-97 283
MS.gene96164.t1 MTR_1g075570 62.360 178 53 1 18 195 1 164 2.31e-67 205
MS.gene96164.t1 MTR_0121s0100 76.562 128 30 0 1 128 1 128 3.18e-66 201
MS.gene96164.t1 MTR_3g030780 71.212 132 38 0 1 132 1 132 9.70e-62 190
MS.gene96164.t1 MTR_3g080940 50.811 185 81 1 7 191 7 181 3.89e-61 191
MS.gene96164.t1 MTR_3g067910 67.647 102 33 0 21 122 2 103 5.40e-44 144
MS.gene96164.t1 MTR_2g105290 40.351 171 92 2 5 172 8 171 2.23e-39 134
MS.gene96164.t1 MTR_8g086290 41.566 166 87 2 5 167 8 166 8.85e-39 133
MS.gene96164.t1 MTR_7g028448 43.226 155 76 3 5 159 8 150 8.51e-33 117
MS.gene96164.t1 MTR_4g036915 43.226 155 76 3 5 159 8 150 8.51e-33 117
MS.gene96164.t1 MTR_4g127140 38.674 181 91 4 5 172 8 181 4.06e-30 110
MS.gene96164.t1 MTR_1g108500 56.637 113 26 2 8 118 94 185 1.29e-29 113
MS.gene96164.t1 MTR_3g067875 85.714 56 8 0 18 73 1 56 3.09e-27 99.8
MS.gene96164.t1 MTR_3g067915 48.936 94 48 0 33 126 3 96 2.78e-23 90.5
MS.gene96164.t1 MTR_3g067870 71.429 63 18 0 16 78 83 145 8.95e-23 90.9
MS.gene96164.t1 MTR_1g047550 57.971 69 29 0 9 77 2 70 8.22e-22 89.0
MS.gene96164.t1 MTR_8g079502 57.971 69 29 0 9 77 2 70 1.67e-21 88.2
MS.gene96164.t1 MTR_4g131030 38.793 116 56 3 9 109 2 117 6.18e-21 87.8
MS.gene96164.t1 MTR_1g054265 43.564 101 55 1 9 109 2 100 7.68e-21 86.3
MS.gene96164.t1 MTR_1g063160 43.750 112 58 3 9 118 2 110 7.70e-21 86.7
MS.gene96164.t1 MTR_8g051580 43.564 101 55 1 9 109 2 100 1.66e-20 85.9
MS.gene96164.t1 MTR_8g046350 43.299 97 50 1 9 105 2 93 2.57e-19 82.0
MS.gene96164.t1 MTR_4g094632 39.623 106 62 1 9 114 2 105 2.31e-18 79.3
MS.gene96164.t1 MTR_4g093970 32.749 171 92 4 10 161 29 195 1.27e-17 79.3
MS.gene96164.t1 MTR_3g452380 41.509 106 52 1 3 108 11 106 2.11e-17 79.0
MS.gene96164.t1 MTR_4g102530 52.055 73 35 0 10 82 3 75 2.52e-17 77.8
MS.gene96164.t1 MTR_8g033270 33.533 167 97 4 9 167 2 162 3.72e-17 78.2
MS.gene96164.t1 MTR_4g094638 40.566 106 62 1 9 113 2 107 3.95e-17 76.6
MS.gene96164.t1 MTR_1g053070 37.086 151 78 4 9 157 2 137 4.65e-17 78.2
MS.gene96164.t1 MTR_3g005530 51.471 68 33 0 9 76 2 69 5.65e-17 77.4
MS.gene96164.t1 MTR_5g032150 32.000 200 113 8 9 189 2 197 9.34e-17 76.6
MS.gene96164.t1 MTR_3g102570 33.537 164 95 5 9 160 2 163 2.89e-16 76.6
MS.gene96164.t1 MTR_8g087860 52.941 68 32 0 9 76 18 85 3.49e-16 75.5
MS.gene96164.t1 MTR_5g032520 34.247 146 80 4 9 142 2 143 3.60e-16 75.1
MS.gene96164.t1 MTR_6g464720 50.725 69 33 1 9 76 2 70 4.80e-16 75.1
MS.gene96164.t1 MTR_1g101970 51.471 68 33 0 9 76 2 69 5.04e-16 73.9
MS.gene96164.t1 MTR_2g017865 41.346 104 60 1 9 112 17 119 7.07e-16 75.1
MS.gene96164.t1 MTR_7g075870 38.739 111 66 1 10 120 3 111 9.06e-16 73.9
MS.gene96164.t1 MTR_4g109830 49.275 69 34 1 9 76 2 70 9.34e-16 74.3
MS.gene96164.t1 MTR_5g066180 48.529 68 35 0 9 76 2 69 1.36e-15 73.6
MS.gene96164.t1 MTR_8g022970 32.911 158 93 3 8 159 17 167 1.57e-15 72.4
MS.gene96164.t1 MTR_8g033220 48.718 78 40 0 10 87 3 80 2.25e-15 72.8
MS.gene96164.t1 MTR_8g033220 48.718 78 40 0 10 87 3 80 2.50e-15 72.8
MS.gene96164.t1 MTR_2g009890 50.000 68 34 0 9 76 2 69 2.52e-15 73.6
MS.gene96164.t1 MTR_3g437790 34.266 143 77 4 26 159 30 164 6.01e-15 70.9
MS.gene96164.t1 MTR_8g066260 42.169 83 45 1 9 91 2 81 9.69e-15 71.6
MS.gene96164.t1 MTR_4g084740 47.368 76 38 2 9 83 2 76 9.82e-15 72.8
MS.gene96164.t1 MTR_5g046790 46.479 71 35 1 9 79 2 69 1.48e-14 70.5
MS.gene96164.t1 MTR_0003s0590 51.471 68 33 0 9 76 2 69 1.55e-14 71.2
MS.gene96164.t1 MTR_5g046870 49.275 69 34 1 9 76 2 70 2.29e-14 67.8
MS.gene96164.t1 MTR_7g075870 38.393 112 66 2 10 120 3 112 2.33e-14 70.1
MS.gene96164.t1 MTR_5g031000 47.059 68 36 0 9 76 2 69 3.84e-14 69.7
MS.gene96164.t1 MTR_5g031000 47.059 68 36 0 9 76 2 69 3.98e-14 69.7
MS.gene96164.t1 MTR_2g461710 55.357 56 25 0 9 64 2 57 4.83e-14 65.1
MS.gene96164.t1 MTR_7g016630 27.363 201 134 4 9 197 2 202 6.44e-14 69.3
MS.gene96164.t1 MTR_6g015975 47.826 69 35 1 9 76 2 70 1.22e-13 68.6
MS.gene96164.t1 MTR_7g016600 47.826 69 35 1 9 76 2 70 1.52e-13 68.2
MS.gene96164.t1 MTR_1g038300 48.571 70 34 1 9 76 2 71 1.56e-13 68.2
MS.gene96164.t1 MTR_5g021270 48.571 70 34 1 9 76 2 71 1.83e-13 67.8
MS.gene96164.t1 MTR_5g021270 48.571 70 34 1 9 76 2 71 1.95e-13 67.8
MS.gene96164.t1 MTR_4g109810 32.245 245 123 15 9 230 2 226 3.40e-13 67.4
MS.gene96164.t1 MTR_3g084980 49.275 69 34 1 9 76 2 70 4.29e-13 67.0
MS.gene96164.t1 MTR_7g075850 47.143 70 35 1 9 76 2 71 5.23e-13 67.0
MS.gene96164.t1 MTR_8g097090 47.826 69 35 1 9 76 2 70 5.58e-13 66.6
MS.gene96164.t1 MTR_1g029670 44.286 70 37 1 9 76 2 71 5.67e-13 65.5
MS.gene96164.t1 MTR_5g066960 47.368 57 30 0 9 65 2 58 2.35e-12 60.8
MS.gene96164.t1 MTR_3g109930 31.343 134 88 2 27 159 20 150 2.79e-12 63.5
MS.gene96164.t1 MTR_3g088615 42.857 70 38 1 9 76 2 71 2.92e-12 63.5
MS.gene96164.t1 MTR_3g113030 47.619 63 33 0 9 71 2 64 4.10e-12 63.9
MS.gene96164.t1 MTR_4g051538 33.333 162 94 4 1 161 1 149 5.05e-12 63.9
MS.gene96164.t1 MTR_4g093030 40.476 84 34 1 9 76 2 85 1.38e-11 61.2
MS.gene96164.t1 MTR_4g108720 31.538 130 82 5 9 134 2 128 1.46e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96164.t1 AT5G60440 53.191 188 81 3 5 189 3 186 9.47e-60 190
MS.gene96164.t1 AT2G24840 49.068 161 71 4 6 160 60 215 1.69e-40 140
MS.gene96164.t1 AT4G36590 46.914 162 80 2 5 160 3 164 4.71e-39 135
MS.gene96164.t1 AT1G01530 42.105 190 102 4 4 192 2 184 4.84e-38 133
MS.gene96164.t1 AT1G65360 39.153 189 108 3 5 192 3 185 1.04e-36 129
MS.gene96164.t1 AT2G34440 44.444 117 56 2 9 121 2 113 3.30e-25 97.8
MS.gene96164.t1 AT3G66656 40.945 127 71 1 9 131 2 128 1.69e-24 96.3
MS.gene96164.t1 AT3G04100 30.263 152 102 2 2 149 7 158 1.27e-22 92.0
MS.gene96164.t1 AT1G72350 54.795 73 31 1 9 81 43 113 5.18e-20 85.5
MS.gene96164.t1 AT1G28460 30.814 172 111 3 5 174 4 169 2.29e-19 82.8
MS.gene96164.t1 AT4G09960 47.674 86 44 1 9 93 2 87 2.11e-18 80.9
MS.gene96164.t1 AT4G09960 47.674 86 44 1 9 93 3 88 2.55e-18 81.3
MS.gene96164.t1 AT4G09960 47.674 86 44 1 9 93 2 87 2.58e-18 81.3
MS.gene96164.t1 AT1G29962 30.233 172 113 4 5 169 4 175 3.10e-18 79.7
MS.gene96164.t1 AT4G09960 47.674 86 44 1 9 93 12 97 3.69e-18 80.9
MS.gene96164.t1 AT4G09960 47.674 86 44 1 9 93 28 113 5.11e-18 80.9
MS.gene96164.t1 AT2G45650 54.412 68 31 0 9 76 2 69 7.68e-18 80.1
MS.gene96164.t1 AT4G22950 48.684 76 39 0 10 85 3 78 9.34e-18 78.2
MS.gene96164.t1 AT4G09960 47.674 86 44 1 9 93 97 182 1.51e-17 80.5
MS.gene96164.t1 AT4G22950 48.684 76 39 0 10 85 3 78 3.93e-17 77.8
MS.gene96164.t1 AT4G22950 48.684 76 39 0 10 85 3 78 3.93e-17 77.8
MS.gene96164.t1 AT2G22540 36.957 138 77 4 9 137 2 138 4.46e-17 77.8
MS.gene96164.t1 AT2G22540 36.957 138 77 4 9 137 2 138 4.46e-17 77.8
MS.gene96164.t1 AT4G18960 43.269 104 48 2 5 108 15 107 1.04e-16 77.0
MS.gene96164.t1 AT2G45660 51.471 68 33 0 10 77 3 70 1.40e-16 74.7
MS.gene96164.t1 AT2G45660 33.133 166 83 6 10 160 3 155 3.06e-16 75.1
MS.gene96164.t1 AT3G61120 52.941 68 32 0 9 76 2 69 3.88e-16 75.5
MS.gene96164.t1 AT3G57230 48.529 68 35 0 9 76 2 69 3.92e-16 73.2
MS.gene96164.t1 AT4G24540 34.722 144 82 4 9 142 2 143 4.00e-16 75.1
MS.gene96164.t1 AT5G62165 50.746 67 33 0 10 76 3 69 7.11e-16 71.6
MS.gene96164.t1 AT2G42830 49.296 71 36 0 6 76 14 84 1.12e-15 74.3
MS.gene96164.t1 AT1G22130 37.143 105 65 1 9 112 2 106 1.13e-15 75.5
MS.gene96164.t1 AT2G42830 49.296 71 36 0 6 76 14 84 1.20e-15 74.3
MS.gene96164.t1 AT3G58780 49.296 71 36 0 6 76 14 84 1.24e-15 74.3
MS.gene96164.t1 AT5G62165 50.746 67 33 0 10 76 3 69 1.29e-15 72.0
MS.gene96164.t1 AT5G62165 50.746 67 33 0 10 76 3 69 1.29e-15 72.0
MS.gene96164.t1 AT5G62165 50.746 67 33 0 10 76 3 69 1.29e-15 72.0
MS.gene96164.t1 AT5G62165 50.746 67 33 0 10 76 3 69 1.29e-15 72.0
MS.gene96164.t1 AT5G62165 50.746 67 33 0 10 76 3 69 1.29e-15 72.0
MS.gene96164.t1 AT3G58780 49.296 71 36 0 6 76 20 90 1.32e-15 74.3
MS.gene96164.t1 AT5G62165 50.746 67 33 0 10 76 3 69 1.58e-15 72.0
MS.gene96164.t1 AT5G62165 50.746 67 33 0 10 76 3 69 1.58e-15 72.0
MS.gene96164.t1 AT5G62165 50.746 67 33 0 10 76 3 69 1.58e-15 72.0
MS.gene96164.t1 AT3G57230 48.529 68 35 0 9 76 2 69 1.59e-15 73.6
MS.gene96164.t1 AT3G57230 48.529 68 35 0 9 76 2 69 1.59e-15 73.6
MS.gene96164.t1 AT3G58780 49.296 71 36 0 6 76 14 84 1.90e-15 73.9
MS.gene96164.t1 AT1G77950 46.053 76 39 2 9 83 2 76 1.96e-15 73.6
MS.gene96164.t1 AT1G77950 46.053 76 39 2 9 83 2 76 1.96e-15 73.6
MS.gene96164.t1 AT1G77950 46.053 76 39 2 9 83 2 76 1.96e-15 73.6
MS.gene96164.t1 AT1G77950 46.053 76 39 2 9 83 2 76 1.96e-15 73.6
MS.gene96164.t1 AT3G57390 50.000 68 34 0 9 76 2 69 2.57e-15 72.8
MS.gene96164.t1 AT1G77980 37.143 105 65 1 9 112 2 106 2.83e-15 74.3
MS.gene96164.t1 AT2G22630 48.529 68 35 0 9 76 2 69 3.25e-15 72.8
MS.gene96164.t1 AT2G22630 48.529 68 35 0 9 76 2 69 3.25e-15 72.8
MS.gene96164.t1 AT4G11880 50.000 72 35 1 10 80 3 74 3.33e-15 71.6
MS.gene96164.t1 AT4G11880 50.000 72 35 1 10 80 3 74 3.33e-15 71.6
MS.gene96164.t1 AT5G51870 52.239 67 32 0 10 76 3 69 3.44e-15 71.2
MS.gene96164.t1 AT5G60910 50.704 71 32 1 9 79 2 69 4.26e-15 72.4
MS.gene96164.t1 AT5G62165 50.746 67 33 0 10 76 3 69 4.64e-15 71.6
MS.gene96164.t1 AT5G62165 50.746 67 33 0 10 76 3 69 4.64e-15 71.6
MS.gene96164.t1 AT3G57390 50.000 68 34 0 9 76 2 69 4.79e-15 72.8
MS.gene96164.t1 AT5G51870 52.239 67 32 0 10 76 3 69 5.18e-15 71.6
MS.gene96164.t1 AT5G13790 43.011 93 44 1 9 101 2 85 5.46e-15 72.8
MS.gene96164.t1 AT5G51870 48.611 72 37 0 5 76 21 92 5.64e-15 71.2
MS.gene96164.t1 AT5G62165 50.746 67 33 0 10 76 3 69 5.98e-15 71.6
MS.gene96164.t1 AT5G62165 50.746 67 33 0 10 76 3 69 5.98e-15 71.6
MS.gene96164.t1 AT5G62165 50.746 67 33 0 10 76 3 69 5.98e-15 71.6
MS.gene96164.t1 AT1G17310 51.899 79 36 1 8 86 47 123 6.44e-15 71.6
MS.gene96164.t1 AT5G13790 51.471 68 33 0 9 76 2 69 6.56e-15 72.4
MS.gene96164.t1 AT4G11880 50.000 72 35 1 10 80 3 74 7.36e-15 71.6
MS.gene96164.t1 AT4G11880 50.000 72 35 1 10 80 3 74 7.36e-15 71.6
MS.gene96164.t1 AT1G26310 49.275 69 34 1 9 76 2 70 7.65e-15 72.0
MS.gene96164.t1 AT1G17310 51.899 79 36 1 8 86 58 134 8.03e-15 71.6
MS.gene96164.t1 AT5G51870 52.239 67 32 0 10 76 3 69 9.10e-15 71.2
MS.gene96164.t1 AT1G69120 39.560 91 52 1 9 99 2 89 9.14e-15 71.6
MS.gene96164.t1 AT5G51870 52.239 67 32 0 10 76 13 79 1.02e-14 71.2
MS.gene96164.t1 AT5G51860 50.746 67 33 0 10 76 3 69 1.23e-14 70.5
MS.gene96164.t1 AT4G37940 47.059 68 36 0 9 76 2 69 1.38e-14 70.5
MS.gene96164.t1 AT5G51860 50.746 67 33 0 10 76 3 69 1.46e-14 70.5
MS.gene96164.t1 AT2G22540 37.762 143 64 6 9 137 2 133 1.47e-14 70.9
MS.gene96164.t1 AT1G69120 39.560 91 52 1 9 99 2 89 1.53e-14 71.2
MS.gene96164.t1 AT4G37940 47.059 68 36 0 9 76 2 69 1.59e-14 69.7
MS.gene96164.t1 AT4G37940 47.059 68 36 0 9 76 2 69 1.65e-14 70.9
MS.gene96164.t1 AT5G10140 47.826 69 35 1 9 76 2 70 1.75e-14 69.3
MS.gene96164.t1 AT5G10140 47.826 69 35 1 9 76 2 70 2.65e-14 69.3
MS.gene96164.t1 AT5G10140 47.826 69 35 1 9 76 2 70 2.79e-14 69.3
MS.gene96164.t1 AT5G10140 47.826 69 35 1 9 76 2 70 2.86e-14 69.3
MS.gene96164.t1 AT3G54340 36.765 136 77 5 9 137 2 135 4.02e-14 69.7
MS.gene96164.t1 AT2G14210 47.826 69 35 1 9 76 2 70 6.17e-14 69.3
MS.gene96164.t1 AT2G14210 47.826 69 35 1 9 76 2 70 6.58e-14 69.3
MS.gene96164.t1 AT3G02310 49.275 69 34 1 9 76 2 70 1.10e-13 67.8
MS.gene96164.t1 AT3G30260 28.485 165 100 4 9 172 2 149 1.15e-13 68.6
MS.gene96164.t1 AT1G28450 29.197 137 92 3 5 136 4 140 1.16e-13 67.4
MS.gene96164.t1 AT5G20240 50.000 62 31 0 9 70 2 63 1.18e-13 66.6
MS.gene96164.t1 AT5G23260 43.299 97 47 3 2 90 9 105 1.54e-13 68.6
MS.gene96164.t1 AT5G23260 43.299 97 47 3 2 90 9 105 1.75e-13 68.6
MS.gene96164.t1 AT5G15800 47.826 69 35 1 9 76 2 70 2.23e-13 67.8
MS.gene96164.t1 AT3G02310 49.275 69 34 1 9 76 2 70 2.66e-13 67.8
MS.gene96164.t1 AT5G23260 44.318 88 43 2 9 90 2 89 2.83e-13 67.8
MS.gene96164.t1 AT5G23260 44.318 88 43 2 9 90 2 89 2.91e-13 67.4
MS.gene96164.t1 AT5G15800 47.826 69 35 1 9 76 2 70 3.09e-13 67.8
MS.gene96164.t1 AT5G20240 45.714 70 36 1 9 76 2 71 3.56e-13 66.6
MS.gene96164.t1 AT1G24260 29.046 241 135 11 9 234 2 221 5.89e-13 66.6
MS.gene96164.t1 AT1G24260 47.826 69 35 1 9 76 2 70 7.68e-13 66.6
MS.gene96164.t1 AT1G24260 47.826 69 35 1 9 76 2 70 7.98e-13 66.2
MS.gene96164.t1 AT3G58780 50.000 60 30 0 6 65 14 73 8.34e-13 66.2
MS.gene96164.t1 AT2G03710 51.786 56 27 0 9 64 2 57 1.08e-12 65.1
MS.gene96164.t1 AT3G58780 50.000 60 30 0 6 65 14 73 1.13e-12 66.2
MS.gene96164.t1 AT1G47760 35.135 111 57 3 9 118 2 98 2.19e-12 63.9
MS.gene96164.t1 AT2G03710 51.786 56 27 0 9 64 2 57 3.06e-12 64.7
MS.gene96164.t1 AT2G03710 51.786 56 27 0 9 64 2 57 3.31e-12 64.7
MS.gene96164.t1 AT5G65050 43.478 69 38 1 9 76 2 70 6.18e-12 62.8
MS.gene96164.t1 AT5G65070 42.029 69 39 1 9 76 2 70 6.53e-12 62.0
MS.gene96164.t1 AT5G65050 43.478 69 38 1 9 76 2 70 8.95e-12 62.4
MS.gene96164.t1 AT5G65050 43.478 69 38 1 9 76 2 70 9.90e-12 62.4
MS.gene96164.t1 AT5G65050 43.478 69 38 1 9 76 2 70 1.07e-11 62.4
MS.gene96164.t1 AT1G46408 36.975 119 66 4 10 119 5 123 1.25e-11 63.2
MS.gene96164.t1 AT5G65070 42.029 69 39 1 9 76 2 70 1.70e-11 62.0
MS.gene96164.t1 AT1G71692 40.000 70 41 1 9 77 2 71 2.36e-11 61.6
MS.gene96164.t1 AT5G65070 42.029 69 39 1 9 76 2 70 2.47e-11 61.6
MS.gene96164.t1 AT5G65070 42.029 69 39 1 9 76 2 70 2.68e-11 62.0
MS.gene96164.t1 AT5G65060 42.029 69 39 1 9 76 2 70 3.96e-11 60.8
MS.gene96164.t1 AT5G65060 42.029 69 39 1 9 76 2 70 4.28e-11 60.5
MS.gene96164.t1 AT5G65060 42.029 69 39 1 9 76 2 70 4.86e-11 60.5
MS.gene96164.t1 AT5G27130 41.558 77 41 2 10 82 14 90 9.91e-11 60.8

Find 54 sgRNAs with CRISPR-Local

Find 78 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGTTTAGTTTCAACAATA+TGG 0.214738 8.4:+56463219 MS.gene96164:CDS
ATTTGAGTTTGCCGAGGATT+TGG 0.298786 8.4:-56463154 None:intergenic
ATTGCATTGTACCATTGTTT+TGG 0.308530 8.4:-56462811 None:intergenic
TGGTGGGTTGGTCCCGTTGA+TGG 0.316276 8.4:+56462968 MS.gene96164:CDS
AGGCGACCGAGGCTCAATTT+TGG 0.319875 8.4:+56462948 MS.gene96164:CDS
TGCTGATAGGCTTGTTATCC+AGG 0.360030 8.4:+56463060 MS.gene96164:CDS
TTGTTTAGTTTCAACAATAT+GGG 0.373512 8.4:+56463220 MS.gene96164:CDS
CCTCGGTCGCCTTGCGTAAG+TGG 0.412707 8.4:-56462937 None:intergenic
TCTTCTCCATGTCCAGTAGC+TGG 0.428165 8.4:-56462895 None:intergenic
GTCCCGTTGATGGGATGAAT+AGG 0.432754 8.4:+56462978 MS.gene96164:CDS
TGGCTGCACATCATGCTGAT+AGG 0.441356 8.4:+56463047 MS.gene96164:CDS
GGTGGGTTGGTCCCGTTGAT+GGG 0.452333 8.4:+56462969 MS.gene96164:CDS
GCCGAGGATTTGGTTGATGA+TGG 0.469751 8.4:-56463144 None:intergenic
TTTGGAGGAGACTAAGAAAC+TGG 0.472544 8.4:+56463027 MS.gene96164:CDS
TCCCGTTGATGGGATGAATA+GGG 0.472863 8.4:+56462979 MS.gene96164:CDS
CTCTATGACCGTATCAACAT+TGG 0.477809 8.4:-56462765 None:intergenic
AACAAATGAGATTGCAACAT+AGG 0.480998 8.4:-56463202 None:intergenic
GCCCTATTCATCCCATCAAC+GGG 0.481029 8.4:-56462980 None:intergenic
ATGATGGAGAGGCATGTTAG+AGG 0.501643 8.4:-56463128 None:intergenic
GGGCTCAGATCAAAAGAATC+CGG 0.505206 8.4:-56463266 None:intergenic
GACTCAGATCAACCAGCTAC+TGG 0.508380 8.4:+56462883 MS.gene96164:CDS
TGTTTAGTTTCAACAATATG+GGG 0.522195 8.4:+56463221 MS.gene96164:CDS
ACTGAGAGTGCAAAGCTCAC+TGG 0.526727 8.4:-56462681 None:intergenic
AGTATTGAGCTCGCGCACGT+TGG 0.531885 8.4:-56462855 None:intergenic
GCTCGCGCACGTTGGCGCTA+CGG 0.534754 8.4:-56462847 None:intergenic
GGCCCTATTCATCCCATCAA+CGG 0.536262 8.4:-56462981 None:intergenic
TCTATGACCGTATCAACATT+GGG 0.539713 8.4:-56462764 None:intergenic
TCCATCATCAACCAAATCCT+CGG 0.543176 8.4:+56463143 MS.gene96164:CDS
TGGCCAACCCAATGTTGATA+CGG 0.545005 8.4:+56462757 MS.gene96164:CDS
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 8.4:+56462645 MS.gene96164:CDS
GATCAACCAGCTACTGGACA+TGG 0.554332 8.4:+56462889 MS.gene96164:CDS
ACAAATGAGATTGCAACATA+GGG 0.555620 8.4:-56463201 None:intergenic
GGAGGTGGATATGGACCCTC+CGG 0.560213 8.4:+56463247 MS.gene96164:CDS
ATTCAACCATGTCGAGTGGA+AGG 0.567884 8.4:+56462558 None:intergenic
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 8.4:+56462644 MS.gene96164:CDS
CCACTTACGCAAGGCGACCG+AGG 0.585405 8.4:+56462937 MS.gene96164:CDS
AATGAAAATACCTTCTCCCC+AGG 0.587583 8.4:-56462734 None:intergenic
GCTGATAGGCTTGTTATCCA+GGG 0.594644 8.4:+56463061 MS.gene96164:CDS
AACCCACCAAAATTGAGCCT+CGG 0.597830 8.4:-56462954 None:intergenic
TGACCGTATCAACATTGGGT+TGG 0.600758 8.4:-56462760 None:intergenic
AGTGAGCTTTGCACTCTCAG+TGG 0.609659 8.4:+56462683 MS.gene96164:CDS
CTTTCTTGAAGAGCCCACTA+CGG 0.610979 8.4:-56462658 None:intergenic
GGATTTGGTTGATGATGGAG+AGG 0.611456 8.4:-56463139 None:intergenic
GTTTAGTTTCAACAATATGG+GGG 0.615633 8.4:+56463222 MS.gene96164:CDS
TTTAGTTTCAACAATATGGG+GGG 0.617072 8.4:+56463223 MS.gene96164:CDS
TGTGATTCAACCATGTCGAG+TGG 0.620546 8.4:+56462554 None:intergenic
TGGTTTGAGTAGGAGCACCC+TGG 0.630101 8.4:-56463078 None:intergenic
TGGTACAATGCAATTCATTG+AGG 0.638950 8.4:+56462820 MS.gene96164:CDS
CGAGTCCCACCCCAAAACAA+TGG 0.639467 8.4:+56462800 MS.gene96164:CDS
GGAAACATTTGAGTTTGCCG+AGG 0.647148 8.4:-56463160 None:intergenic
CTCAGATCAAAAGAATCCGG+AGG 0.653378 8.4:-56463263 None:intergenic
TCAGATCAAAAGAATCCGGA+GGG 0.678771 8.4:-56463262 None:intergenic
AGAGCTGAACCACTTACGCA+AGG 0.684514 8.4:+56462928 MS.gene96164:CDS
TCGAGTGGAAGGAAAAGCCG+AGG 0.691796 8.4:+56462569 MS.gene96164:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTTTGAAAAATTCAAGTT+GGG - chr8.4:56463005-56463024 None:intergenic 20.0%
!!! TTGTTTAGTTTCAACAATAT+GGG + chr8.4:56463220-56463239 MS.gene96164:CDS 20.0%
!!! TTTGTTTAGTTTCAACAATA+TGG + chr8.4:56463219-56463238 MS.gene96164:CDS 20.0%
!!! TTTTTTTCATCTCAATCTTT+TGG - chr8.4:56462598-56462617 None:intergenic 20.0%
! ATTTCCAACAAAAAATGGAA+TGG - chr8.4:56463101-56463120 None:intergenic 25.0%
!! TGTTTAGTTTCAACAATATG+GGG + chr8.4:56463221-56463240 MS.gene96164:CDS 25.0%
!!! ATTCCATTTTTTGTTGGAAA+TGG + chr8.4:56463100-56463119 MS.gene96164:CDS 25.0%
!!! CCAACTTGAATTTTTCAAAA+AGG + chr8.4:56463003-56463022 MS.gene96164:CDS 25.0%
!!! CCTTTTTGAAAAATTCAAGT+TGG - chr8.4:56463006-56463025 None:intergenic 25.0%
!!! TGAATTTTTCAAAAAGGCTT+TGG + chr8.4:56463009-56463028 MS.gene96164:CDS 25.0%
AAAAATGGAATGGTTTGAGT+AGG - chr8.4:56463091-56463110 None:intergenic 30.0%
AACAAATGAGATTGCAACAT+AGG - chr8.4:56463205-56463224 None:intergenic 30.0%
ACAAATGAGATTGCAACATA+GGG - chr8.4:56463204-56463223 None:intergenic 30.0%
GAACCATTTCCAACAAAAAA+TGG - chr8.4:56463106-56463125 None:intergenic 30.0%
! ATTGCATTGTACCATTGTTT+TGG - chr8.4:56462814-56462833 None:intergenic 30.0%
! GTTTAGTTTCAACAATATGG+GGG + chr8.4:56463222-56463241 MS.gene96164:CDS 30.0%
! TTGCATTGTACCATTGTTTT+GGG - chr8.4:56462813-56462832 None:intergenic 30.0%
! TTTAGTTTCAACAATATGGG+GGG + chr8.4:56463223-56463242 MS.gene96164:CDS 30.0%
!! ATTTTTCAAAAAGGCTTTGG+AGG + chr8.4:56463012-56463031 MS.gene96164:CDS 30.0%
!!! CAAACCATTCCATTTTTTGT+TGG + chr8.4:56463094-56463113 MS.gene96164:CDS 30.0%
TCTATGACCGTATCAACATT+GGG - chr8.4:56462767-56462786 None:intergenic 35.0%
TGGTACAATGCAATTCATTG+AGG + chr8.4:56462820-56462839 MS.gene96164:CDS 35.0%
!! TGCATTGTACCATTGTTTTG+GGG - chr8.4:56462812-56462831 None:intergenic 35.0%
AATGAAAATACCTTCTCCCC+AGG - chr8.4:56462737-56462756 None:intergenic 40.0%
CTCTATGACCGTATCAACAT+TGG - chr8.4:56462768-56462787 None:intergenic 40.0%
TCCATCATCAACCAAATCCT+CGG + chr8.4:56463143-56463162 MS.gene96164:CDS 40.0%
TTTGGAGGAGACTAAGAAAC+TGG + chr8.4:56463027-56463046 MS.gene96164:CDS 40.0%
! ATTTGAGTTTGCCGAGGATT+TGG - chr8.4:56463157-56463176 None:intergenic 40.0%
! CTCTCATTGTTTTCTCACCT+GGG + chr8.4:56462717-56462736 MS.gene96164:CDS 40.0%
! TCTCATTGTTTTCTCACCTG+GGG + chr8.4:56462718-56462737 MS.gene96164:CDS 40.0%
!! GGGTTCTGAAAAAATTGTGC+TGG - chr8.4:56463184-56463203 None:intergenic 40.0%
!!! ATTGTACCATTGTTTTGGGG+TGG - chr8.4:56462809-56462828 None:intergenic 40.0%
!!! GGGGAGAAGGTATTTTCATT+TGG + chr8.4:56462737-56462756 MS.gene96164:CDS 40.0%
!!! TTGTACCATTGTTTTGGGGT+GGG - chr8.4:56462808-56462827 None:intergenic 40.0%
AACCCACCAAAATTGAGCCT+CGG - chr8.4:56462957-56462976 None:intergenic 45.0%
AGTTTCAACAATATGGGGGG+AGG + chr8.4:56463226-56463245 MS.gene96164:CDS 45.0%
CTTTCTTGAAGAGCCCACTA+CGG - chr8.4:56462661-56462680 None:intergenic 45.0%
TGACCGTATCAACATTGGGT+TGG - chr8.4:56462763-56462782 None:intergenic 45.0%
TGGCCAACCCAATGTTGATA+CGG + chr8.4:56462757-56462776 MS.gene96164:CDS 45.0%
! ATGATGGAGAGGCATGTTAG+AGG - chr8.4:56463131-56463150 None:intergenic 45.0%
! GCTCTCATTGTTTTCTCACC+TGG + chr8.4:56462716-56462735 MS.gene96164:CDS 45.0%
! GGAAACATTTGAGTTTGCCG+AGG - chr8.4:56463163-56463182 None:intergenic 45.0%
! TCCCGTTGATGGGATGAATA+GGG + chr8.4:56462979-56462998 MS.gene96164:CDS 45.0%
! TCTCAATCTTTTGGCGACCT+CGG - chr8.4:56462589-56462608 None:intergenic 45.0%
!! GCTGATAGGCTTGTTATCCA+GGG + chr8.4:56463061-56463080 MS.gene96164:CDS 45.0%
!! GGATTTGGTTGATGATGGAG+AGG - chr8.4:56463142-56463161 None:intergenic 45.0%
!! TGCTGATAGGCTTGTTATCC+AGG + chr8.4:56463060-56463079 MS.gene96164:CDS 45.0%
AGAGCTGAACCACTTACGCA+AGG + chr8.4:56462928-56462947 MS.gene96164:CDS 50.0%
AGTGAGCTTTGCACTCTCAG+TGG + chr8.4:56462683-56462702 MS.gene96164:CDS 50.0%
GACTCAGATCAACCAGCTAC+TGG + chr8.4:56462883-56462902 MS.gene96164:CDS 50.0%
GATCAACCAGCTACTGGACA+TGG + chr8.4:56462889-56462908 MS.gene96164:CDS 50.0%
GCCCTATTCATCCCATCAAC+GGG - chr8.4:56462983-56463002 None:intergenic 50.0%
GGCCCTATTCATCCCATCAA+CGG - chr8.4:56462984-56463003 None:intergenic 50.0%
TCTTCTCCATGTCCAGTAGC+TGG - chr8.4:56462898-56462917 None:intergenic 50.0%
TGGCTGCACATCATGCTGAT+AGG + chr8.4:56463047-56463066 MS.gene96164:CDS 50.0%
TTCAACAATATGGGGGGAGG+AGG + chr8.4:56463229-56463248 MS.gene96164:CDS 50.0%
! ACTGAGAGTGCAAAGCTCAC+TGG - chr8.4:56462684-56462703 None:intergenic 50.0%
! GTCCCGTTGATGGGATGAAT+AGG + chr8.4:56462978-56462997 MS.gene96164:CDS 50.0%
! TGTTTTCTCACCTGGGGAGA+AGG + chr8.4:56462724-56462743 MS.gene96164:CDS 50.0%
!! GACCGAGGCTCAATTTTGGT+GGG + chr8.4:56462952-56462971 MS.gene96164:CDS 50.0%
!! GAGGCTCAATTTTGGTGGGT+TGG + chr8.4:56462956-56462975 MS.gene96164:CDS 50.0%
!! GCCGAGGATTTGGTTGATGA+TGG - chr8.4:56463147-56463166 None:intergenic 50.0%
AACAATATGGGGGGAGGAGG+TGG + chr8.4:56463232-56463251 MS.gene96164:CDS 55.0%
CGAGTCCCACCCCAAAACAA+TGG + chr8.4:56462800-56462819 MS.gene96164:CDS 55.0%
TCGAGTGGAAGGAAAAGCCG+AGG + chr8.4:56462569-56462588 MS.gene96164:CDS 55.0%
! AGGCGACCGAGGCTCAATTT+TGG + chr8.4:56462948-56462967 MS.gene96164:CDS 55.0%
! AGTATTGAGCTCGCGCACGT+TGG - chr8.4:56462858-56462877 None:intergenic 55.0%
! CGACCGAGGCTCAATTTTGG+TGG + chr8.4:56462951-56462970 MS.gene96164:CDS 55.0%
!! ACTTTCTCGAAGCGCCGTAG+TGG + chr8.4:56462644-56462663 MS.gene96164:CDS 55.0%
!! CTTTCTCGAAGCGCCGTAGT+GGG + chr8.4:56462645-56462664 MS.gene96164:CDS 55.0%
!! TGGTTTGAGTAGGAGCACCC+TGG - chr8.4:56463081-56463100 None:intergenic 55.0%
ATGGGGGGAGGAGGTGGATA+TGG + chr8.4:56463238-56463257 MS.gene96164:CDS 60.0%
GGAGGTGGATATGGACCCTC+CGG + chr8.4:56463247-56463266 MS.gene96164:CDS 60.0%
!! GGTGGGTTGGTCCCGTTGAT+GGG + chr8.4:56462969-56462988 MS.gene96164:CDS 60.0%
!! TGGTGGGTTGGTCCCGTTGA+TGG + chr8.4:56462968-56462987 MS.gene96164:CDS 60.0%
CCACTTACGCAAGGCGACCG+AGG + chr8.4:56462937-56462956 MS.gene96164:CDS 65.0%
CCTCGGTCGCCTTGCGTAAG+TGG - chr8.4:56462940-56462959 None:intergenic 65.0%
GCTCGCGCACGTTGGCGCTA+CGG - chr8.4:56462850-56462869 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 56462566 56463279 56462566 ID=MS.gene96164
chr8.4 mRNA 56462566 56463279 56462566 ID=MS.gene96164.t1;Parent=MS.gene96164
chr8.4 exon 56462566 56463279 56462566 ID=MS.gene96164.t1.exon1;Parent=MS.gene96164.t1
chr8.4 CDS 56462566 56463279 56462566 ID=cds.MS.gene96164.t1;Parent=MS.gene96164.t1
Gene Sequence

>MS.gene96164

ATGTCGAGTGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGAGATGAAAAAAATGAGCAACGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACTCTCAGTGGTGCAGATGTTGCTCTCATTGTTTTCTCACCTGGGGAGAAGGTATTTTCATTTGGCCAACCCAATGTTGATACGGTCATAGAGCGTTATCTCTCTCGAGTCCCACCCCAAAACAATGGTACAATGCAATTCATTGAGGCTCACCGTAGCGCCAACGTGCGCGAGCTCAATACTCAGCTGACTCAGATCAACCAGCTACTGGACATGGAGAAGAAACGTGTTGAAGAGCTGAACCACTTACGCAAGGCGACCGAGGCTCAATTTTGGTGGGTTGGTCCCGTTGATGGGATGAATAGGGCCCAACTTGAATTTTTCAAAAAGGCTTTGGAGGAGACTAAGAAACTGGCTGCACATCATGCTGATAGGCTTGTTATCCAGGGTGCTCCTACTCAAACCATTCCATTTTTTGTTGGAAATGGTTCATCCTCTAACATGCCTCTCCATCATCAACCAAATCCTCGGCAAACTCAAATGTTTCCAGCACAATTTTTTCAGAACCCTATGTTGCAATCTCATTTGTTTAGTTTCAACAATATGGGGGGAGGAGGTGGATATGGACCCTCCGGATTCTTTTGA
Protein sequence

>MS.gene96164.t1

MSSGRKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLSGADVALIVFSPGEKVFSFGQPNVDTVIERYLSRVPPQNNGTMQFIEAHRSANVRELNTQLTQINQLLDMEKKRVEELNHLRKATEAQFWWVGPVDGMNRAQLEFFKKALEETKKLAAHHADRLVIQGAPTQTIPFFVGNGSSSNMPLHHQPNPRQTQMFPAQFFQNPMLQSHLFSFNNMGGGGGYGPSGFF