AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene96514

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96514.t1 MTR_5g055100 86.498 237 32 0 1 237 1 237 1.99e-156 433
MS.gene96514.t1 MTR_2g085280 79.661 236 48 0 1 236 1 236 2.54e-141 395
MS.gene96514.t1 MTR_2g085250 79.661 236 48 0 1 236 1 236 9.88e-141 394
MS.gene96514.t1 MTR_5g045560 77.215 237 54 0 1 237 1 237 2.72e-126 357
MS.gene96514.t1 MTR_5g053390 74.222 225 58 0 1 225 1 225 1.56e-121 345
MS.gene96514.t1 MTR_1g077360 70.222 225 67 0 1 225 1 225 2.44e-113 324
MS.gene96514.t1 MTR_1g075600 69.778 225 68 0 1 225 1 225 6.68e-113 323
MS.gene96514.t1 MTR_8g043650 63.291 237 87 0 1 237 1 237 2.50e-111 319
MS.gene96514.t1 MTR_1g105920 67.580 219 71 0 1 219 1 219 2.94e-110 317
MS.gene96514.t1 MTR_1g012570 64.979 237 83 0 1 237 1 237 3.74e-105 304
MS.gene96514.t1 MTR_2g030740 64.557 237 84 0 1 237 1 237 4.80e-105 303
MS.gene96514.t1 MTR_1g105910 62.447 237 89 0 1 237 1 237 1.40e-104 302
MS.gene96514.t1 MTR_3g052920 64.384 219 78 0 1 219 1 219 2.70e-102 296
MS.gene96514.t1 MTR_1g105905 61.818 220 84 0 18 237 1 220 3.91e-99 288
MS.gene96514.t1 MTR_0121s0080 57.806 237 99 1 1 237 1 236 2.85e-96 281
MS.gene96514.t1 MTR_3g030770 60.851 235 74 3 1 225 1 227 1.16e-95 279
MS.gene96514.t1 MTR_1g108510 60.426 235 75 3 1 225 1 227 9.19e-94 275
MS.gene96514.t1 MTR_2g093190 59.574 235 77 3 1 225 1 227 8.80e-91 267
MS.gene96514.t1 MTR_3g052870 59.817 219 69 2 1 219 1 200 1.74e-87 258
MS.gene96514.t1 MTR_1g108580 54.812 239 91 3 1 237 1 224 9.96e-86 254
MS.gene96514.t1 MTR_1g106070 62.637 182 68 0 1 182 1 182 4.16e-81 241
MS.gene96514.t1 MTR_7g062350 52.119 236 111 2 3 237 14 248 6.06e-81 243
MS.gene96514.t1 MTR_1g075570 61.236 178 55 1 18 195 1 164 2.37e-63 195
MS.gene96514.t1 MTR_3g080940 45.685 197 103 1 1 193 1 197 2.18e-52 169
MS.gene96514.t1 MTR_0121s0100 63.281 128 47 0 1 128 1 128 9.27e-50 159
MS.gene96514.t1 MTR_3g067910 74.510 102 26 0 21 122 2 103 3.00e-49 157
MS.gene96514.t1 MTR_3g030780 61.789 123 47 0 1 123 1 123 4.69e-49 157
MS.gene96514.t1 MTR_3g067875 87.500 56 7 0 18 73 1 56 1.98e-29 105
MS.gene96514.t1 MTR_8g086290 35.928 167 97 2 5 168 8 167 1.89e-28 106
MS.gene96514.t1 MTR_2g105290 32.759 174 105 2 5 174 8 173 6.92e-28 104
MS.gene96514.t1 MTR_7g028448 38.961 154 82 2 5 158 8 149 1.01e-27 104
MS.gene96514.t1 MTR_4g036915 38.961 154 82 2 5 158 8 149 1.01e-27 104
MS.gene96514.t1 MTR_3g067915 54.945 91 41 0 33 123 3 93 5.96e-26 97.4
MS.gene96514.t1 MTR_3g067870 74.603 63 16 0 16 78 83 145 6.28e-26 99.4
MS.gene96514.t1 MTR_1g047550 51.948 77 37 0 9 85 2 78 7.84e-24 94.4
MS.gene96514.t1 MTR_8g079502 54.930 71 32 0 9 79 2 72 1.65e-23 93.6
MS.gene96514.t1 MTR_4g131030 43.636 110 59 2 9 117 2 109 3.42e-23 93.6
MS.gene96514.t1 MTR_8g051580 50.633 79 39 0 9 87 2 80 4.25e-22 90.1
MS.gene96514.t1 MTR_8g046350 53.247 77 36 0 9 85 2 78 6.54e-22 89.0
MS.gene96514.t1 MTR_1g108500 57.317 82 14 1 22 103 110 170 7.25e-22 92.4
MS.gene96514.t1 MTR_1g054265 48.101 79 41 0 9 87 2 80 8.88e-22 89.0
MS.gene96514.t1 MTR_1g063160 40.000 105 61 1 9 111 2 106 3.22e-21 87.4
MS.gene96514.t1 MTR_4g127140 35.393 178 107 3 5 175 8 184 4.34e-20 84.7
MS.gene96514.t1 MTR_4g094632 53.623 69 32 0 9 77 2 70 9.01e-19 80.5
MS.gene96514.t1 MTR_4g093970 34.395 157 91 4 10 158 29 181 1.09e-18 82.4
MS.gene96514.t1 MTR_3g005530 51.471 68 33 0 9 76 2 69 3.22e-18 80.5
MS.gene96514.t1 MTR_4g094638 52.174 69 33 0 9 77 2 70 7.67e-18 78.6
MS.gene96514.t1 MTR_3g452380 45.000 80 44 0 3 82 11 90 1.21e-17 79.3
MS.gene96514.t1 MTR_4g102530 50.000 72 36 0 10 81 3 74 2.47e-17 77.8
MS.gene96514.t1 MTR_8g033270 50.633 79 37 1 9 85 2 80 4.42e-17 78.2
MS.gene96514.t1 MTR_4g109830 52.174 69 32 1 9 76 2 70 6.05e-17 77.4
MS.gene96514.t1 MTR_1g053070 54.412 68 31 0 9 76 2 69 1.48e-16 76.6
MS.gene96514.t1 MTR_5g066180 50.000 68 34 0 9 76 2 69 1.87e-16 75.9
MS.gene96514.t1 MTR_7g075870 48.148 81 38 1 10 86 3 83 1.89e-16 75.5
MS.gene96514.t1 MTR_8g087860 50.000 68 34 0 9 76 18 85 2.19e-16 76.3
MS.gene96514.t1 MTR_6g464720 52.174 69 32 1 9 76 2 70 3.24e-16 75.9
MS.gene96514.t1 MTR_1g101970 52.941 68 32 0 9 76 2 69 4.46e-16 73.9
MS.gene96514.t1 MTR_2g017865 50.000 68 34 0 9 76 17 84 4.78e-16 75.5
MS.gene96514.t1 MTR_0003s0590 52.941 68 32 0 9 76 2 69 5.32e-16 75.1
MS.gene96514.t1 MTR_8g033220 46.667 75 40 0 10 84 3 77 6.28e-16 74.7
MS.gene96514.t1 MTR_8g033220 46.667 75 40 0 10 84 3 77 7.07e-16 74.3
MS.gene96514.t1 MTR_5g032150 50.000 68 34 0 9 76 2 69 1.28e-15 73.6
MS.gene96514.t1 MTR_5g032520 50.000 68 34 0 9 76 2 69 1.62e-15 73.6
MS.gene96514.t1 MTR_4g084740 48.101 79 39 2 9 86 2 79 1.87e-15 74.7
MS.gene96514.t1 MTR_2g009890 43.421 76 43 0 9 84 2 77 2.00e-15 73.9
MS.gene96514.t1 MTR_6g015975 50.725 69 33 1 9 76 2 70 2.97e-15 73.2
MS.gene96514.t1 MTR_7g016600 50.725 69 33 1 9 76 2 70 3.52e-15 72.8
MS.gene96514.t1 MTR_5g031000 45.588 68 37 0 9 76 2 69 3.74e-15 72.8
MS.gene96514.t1 MTR_5g031000 45.588 68 37 0 9 76 2 69 3.80e-15 72.4
MS.gene96514.t1 MTR_7g075870 47.561 82 38 2 10 86 3 84 4.38e-15 72.0
MS.gene96514.t1 MTR_7g016630 45.833 72 38 1 9 79 2 73 4.57e-15 72.8
MS.gene96514.t1 MTR_8g066260 47.826 69 35 1 9 76 2 70 4.94e-15 72.4
MS.gene96514.t1 MTR_5g021270 51.429 70 32 1 9 76 2 71 6.65e-15 71.6
MS.gene96514.t1 MTR_5g021270 51.429 70 32 1 9 76 2 71 6.96e-15 71.6
MS.gene96514.t1 MTR_5g046790 47.826 69 35 1 9 76 2 70 7.11e-15 71.2
MS.gene96514.t1 MTR_3g102570 49.296 71 35 1 9 78 2 72 8.69e-15 72.8
MS.gene96514.t1 MTR_7g075850 46.341 82 41 2 9 87 2 83 1.14e-14 71.6
MS.gene96514.t1 MTR_2g461710 53.571 56 26 0 9 64 2 57 1.29e-14 66.6
MS.gene96514.t1 MTR_1g038300 46.429 84 39 2 9 86 2 85 1.96e-14 70.5
MS.gene96514.t1 MTR_3g088615 45.714 70 36 1 9 76 2 71 2.75e-14 68.9
MS.gene96514.t1 MTR_5g046870 49.275 69 34 1 9 76 2 70 2.90e-14 67.4
MS.gene96514.t1 MTR_1g029670 48.485 66 33 1 9 74 2 66 4.79e-14 68.6
MS.gene96514.t1 MTR_5g066960 49.123 57 29 0 9 65 2 58 5.68e-14 65.1
MS.gene96514.t1 MTR_3g437790 31.469 143 79 5 26 158 30 163 5.80e-14 68.2
MS.gene96514.t1 MTR_3g113030 45.714 70 36 1 9 76 2 71 2.11e-13 67.8
MS.gene96514.t1 MTR_8g097090 47.826 69 35 1 9 76 2 70 2.28e-13 67.8
MS.gene96514.t1 MTR_4g109810 52.632 57 27 0 9 65 2 58 2.49e-13 67.8
MS.gene96514.t1 MTR_8g022970 29.825 171 93 5 2 158 9 166 3.51e-13 66.2
MS.gene96514.t1 MTR_3g084980 53.571 56 26 0 9 64 2 57 3.69e-13 67.0
MS.gene96514.t1 MTR_4g093030 33.607 122 61 2 9 114 2 119 6.15e-13 65.1
MS.gene96514.t1 MTR_4g051538 38.202 89 55 0 1 89 1 89 1.07e-11 62.8
MS.gene96514.t1 MTR_4g036050 41.429 70 40 1 9 77 2 71 1.52e-11 61.6
MS.gene96514.t1 MTR_4g036050 41.429 70 40 1 9 77 2 71 1.69e-11 61.6
MS.gene96514.t1 MTR_4g036050 41.429 70 40 1 9 77 2 71 1.71e-11 62.0
MS.gene96514.t1 MTR_4g036050 41.429 70 40 1 9 77 2 71 1.76e-11 61.6
MS.gene96514.t1 MTR_3g109930 30.818 159 96 5 27 178 20 171 7.89e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96514.t1 AT5G60440 48.677 189 90 3 5 190 3 187 1.85e-52 172
MS.gene96514.t1 AT1G65360 43.684 190 98 4 5 192 3 185 6.45e-42 142
MS.gene96514.t1 AT2G24840 47.468 158 78 2 9 163 63 218 4.84e-38 134
MS.gene96514.t1 AT1G01530 40.526 190 105 3 4 192 2 184 5.33e-38 133
MS.gene96514.t1 AT4G36590 37.131 237 124 8 5 226 3 229 1.78e-35 126
MS.gene96514.t1 AT3G04100 27.551 196 138 2 2 193 7 202 3.80e-25 98.6
MS.gene96514.t1 AT2G34440 52.113 71 34 0 9 79 2 72 6.56e-22 89.4
MS.gene96514.t1 AT3G66656 57.353 68 29 0 9 76 2 69 1.50e-21 88.6
MS.gene96514.t1 AT1G72350 36.000 150 63 3 9 158 43 159 1.70e-21 89.4
MS.gene96514.t1 AT4G37940 32.948 173 85 5 9 154 2 170 3.76e-19 83.2
MS.gene96514.t1 AT2G45660 54.412 68 31 0 10 77 3 70 1.08e-18 80.5
MS.gene96514.t1 AT2G45650 55.882 68 30 0 9 76 2 69 1.34e-18 82.4
MS.gene96514.t1 AT5G51870 54.167 72 33 0 5 76 21 92 2.25e-18 80.5
MS.gene96514.t1 AT2G45660 54.412 68 31 0 10 77 3 70 3.13e-18 80.5
MS.gene96514.t1 AT4G37940 32.240 183 87 6 9 154 2 184 4.53e-18 80.5
MS.gene96514.t1 AT2G22630 32.240 183 87 6 9 154 2 184 5.35e-18 80.1
MS.gene96514.t1 AT2G22630 32.240 183 87 6 9 154 2 184 5.35e-18 80.1
MS.gene96514.t1 AT4G22950 48.611 72 37 0 10 81 3 74 6.22e-18 78.6
MS.gene96514.t1 AT1G28460 30.286 175 108 5 5 170 4 173 6.75e-18 79.0
MS.gene96514.t1 AT4G09960 50.000 68 34 0 9 76 2 69 8.31e-18 79.3
MS.gene96514.t1 AT4G09960 50.000 68 34 0 9 76 2 69 9.14e-18 79.7
MS.gene96514.t1 AT4G09960 50.000 68 34 0 9 76 3 70 9.39e-18 79.7
MS.gene96514.t1 AT4G09960 50.000 68 34 0 9 76 12 79 1.17e-17 79.3
MS.gene96514.t1 AT5G51870 55.224 67 30 0 10 76 3 69 1.28e-17 77.8
MS.gene96514.t1 AT5G10140 30.476 210 127 5 9 215 2 195 1.59e-17 78.2
MS.gene96514.t1 AT4G09960 50.000 68 34 0 9 76 28 95 1.86e-17 79.3
MS.gene96514.t1 AT5G51870 55.224 67 30 0 10 76 3 69 1.89e-17 78.2
MS.gene96514.t1 AT4G22950 49.296 71 36 0 10 80 3 73 2.04e-17 78.6
MS.gene96514.t1 AT4G22950 49.296 71 36 0 10 80 3 73 2.04e-17 78.6
MS.gene96514.t1 AT5G51870 54.286 70 32 0 7 76 10 79 2.12e-17 78.6
MS.gene96514.t1 AT5G51870 55.224 67 30 0 10 76 3 69 3.41e-17 77.8
MS.gene96514.t1 AT5G23260 36.242 149 67 4 5 125 14 162 4.17e-17 78.6
MS.gene96514.t1 AT5G10140 50.725 69 33 1 9 76 2 70 4.37e-17 76.3
MS.gene96514.t1 AT4G09960 50.000 68 34 0 9 76 97 164 4.40e-17 79.3
MS.gene96514.t1 AT5G62165 52.239 67 32 0 10 76 3 69 5.88e-17 74.3
MS.gene96514.t1 AT3G57390 54.412 68 31 0 9 76 2 69 6.33e-17 77.4
MS.gene96514.t1 AT5G10140 50.725 69 33 1 9 76 2 70 6.33e-17 76.3
MS.gene96514.t1 AT5G62165 52.239 67 32 0 10 76 3 69 6.59e-17 75.5
MS.gene96514.t1 AT5G62165 52.239 67 32 0 10 76 3 69 6.59e-17 75.5
MS.gene96514.t1 AT5G62165 52.239 67 32 0 10 76 3 69 6.59e-17 75.5
MS.gene96514.t1 AT5G10140 50.725 69 33 1 9 76 2 70 8.54e-17 75.9
MS.gene96514.t1 AT5G62165 52.239 67 32 0 10 76 3 69 8.84e-17 75.1
MS.gene96514.t1 AT5G62165 52.239 67 32 0 10 76 3 69 8.84e-17 75.1
MS.gene96514.t1 AT5G62165 52.239 67 32 0 10 76 3 69 8.84e-17 75.1
MS.gene96514.t1 AT5G62165 52.239 67 32 0 10 76 3 69 8.84e-17 75.1
MS.gene96514.t1 AT5G62165 52.239 67 32 0 10 76 3 69 8.84e-17 75.1
MS.gene96514.t1 AT3G57230 47.059 68 36 0 9 76 2 69 9.23e-17 75.1
MS.gene96514.t1 AT5G23260 46.739 92 43 2 5 90 14 105 1.10e-16 77.4
MS.gene96514.t1 AT5G23260 36.000 150 68 4 9 130 2 151 1.15e-16 77.0
MS.gene96514.t1 AT3G30260 30.822 146 71 4 9 124 2 147 1.17e-16 77.0
MS.gene96514.t1 AT4G18960 48.000 75 39 0 2 76 11 85 1.38e-16 76.6
MS.gene96514.t1 AT3G57390 54.412 68 31 0 9 76 2 69 1.40e-16 77.0
MS.gene96514.t1 AT5G62165 52.239 67 32 0 10 76 3 69 1.71e-16 75.5
MS.gene96514.t1 AT5G62165 52.239 67 32 0 10 76 3 69 1.71e-16 75.5
MS.gene96514.t1 AT2G42830 46.053 76 41 0 1 76 9 84 1.80e-16 76.3
MS.gene96514.t1 AT3G61120 52.941 68 32 0 9 76 2 69 1.83e-16 76.3
MS.gene96514.t1 AT2G42830 46.053 76 41 0 1 76 9 84 1.91e-16 76.3
MS.gene96514.t1 AT5G62165 52.239 67 32 0 10 76 3 69 2.21e-16 75.5
MS.gene96514.t1 AT5G62165 52.239 67 32 0 10 76 3 69 2.21e-16 75.5
MS.gene96514.t1 AT5G62165 52.239 67 32 0 10 76 3 69 2.21e-16 75.5
MS.gene96514.t1 AT3G57230 47.059 68 36 0 9 76 2 69 2.62e-16 75.9
MS.gene96514.t1 AT3G57230 47.059 68 36 0 9 76 2 69 2.62e-16 75.9
MS.gene96514.t1 AT2G22540 50.000 68 34 0 9 76 2 69 2.64e-16 75.9
MS.gene96514.t1 AT2G22540 50.000 68 34 0 9 76 2 69 2.64e-16 75.9
MS.gene96514.t1 AT3G58780 46.667 75 40 0 2 76 10 84 2.75e-16 75.9
MS.gene96514.t1 AT3G58780 49.296 71 36 0 6 76 20 90 2.84e-16 75.9
MS.gene96514.t1 AT4G24540 52.941 68 32 0 9 76 2 69 3.13e-16 75.1
MS.gene96514.t1 AT4G37940 48.529 68 35 0 9 76 2 69 3.99e-16 73.9
MS.gene96514.t1 AT5G23260 47.727 88 40 2 9 90 2 89 4.62e-16 75.1
MS.gene96514.t1 AT5G51860 52.239 67 32 0 10 76 3 69 4.67e-16 74.3
MS.gene96514.t1 AT1G29962 26.946 167 108 4 5 157 4 170 4.79e-16 73.9
MS.gene96514.t1 AT3G58780 46.667 75 40 0 2 76 10 84 5.10e-16 75.9
MS.gene96514.t1 AT5G51860 52.239 67 32 0 10 76 3 69 6.79e-16 74.3
MS.gene96514.t1 AT5G13790 50.000 68 34 0 9 76 2 69 7.04e-16 75.1
MS.gene96514.t1 AT5G13790 50.000 68 34 0 9 76 2 69 7.72e-16 75.1
MS.gene96514.t1 AT3G54340 48.571 70 34 1 9 76 2 71 8.84e-16 74.3
MS.gene96514.t1 AT1G77980 41.573 89 51 1 9 96 2 90 1.01e-15 75.5
MS.gene96514.t1 AT1G22130 38.384 99 60 1 9 106 2 100 2.18e-15 74.7
MS.gene96514.t1 AT5G60910 49.275 69 34 1 9 76 2 70 2.33e-15 73.2
MS.gene96514.t1 AT5G65050 49.275 69 34 1 9 76 2 70 2.63e-15 72.0
MS.gene96514.t1 AT4G11880 48.611 72 36 1 10 80 3 74 4.17e-15 71.2
MS.gene96514.t1 AT4G11880 48.611 72 36 1 10 80 3 74 4.17e-15 71.2
MS.gene96514.t1 AT1G77950 44.737 76 40 2 9 83 2 76 4.46e-15 72.8
MS.gene96514.t1 AT1G77950 44.737 76 40 2 9 83 2 76 4.46e-15 72.8
MS.gene96514.t1 AT1G77950 44.737 76 40 2 9 83 2 76 4.46e-15 72.8
MS.gene96514.t1 AT1G77950 44.737 76 40 2 9 83 2 76 4.46e-15 72.8
MS.gene96514.t1 AT2G14210 49.275 69 34 1 9 76 2 70 4.60e-15 72.4
MS.gene96514.t1 AT4G11880 48.611 72 36 1 10 80 3 74 5.55e-15 72.0
MS.gene96514.t1 AT4G11880 48.611 72 36 1 10 80 3 74 5.55e-15 72.0
MS.gene96514.t1 AT1G26310 46.377 69 36 1 9 76 2 70 5.83e-15 72.4
MS.gene96514.t1 AT2G14210 49.275 69 34 1 9 76 2 70 6.71e-15 72.0
MS.gene96514.t1 AT5G65050 49.275 69 34 1 9 76 2 70 6.91e-15 70.9
MS.gene96514.t1 AT5G65050 49.275 69 34 1 9 76 2 70 6.94e-15 70.9
MS.gene96514.t1 AT5G65050 49.275 69 34 1 9 76 2 70 7.19e-15 71.2
MS.gene96514.t1 AT5G15800 50.725 69 33 1 9 76 2 70 7.26e-15 72.0
MS.gene96514.t1 AT1G69120 46.377 69 36 1 9 76 2 70 7.93e-15 71.6
MS.gene96514.t1 AT1G17310 52.632 76 34 1 8 83 47 120 7.97e-15 71.2
MS.gene96514.t1 AT2G03710 42.000 100 50 3 9 100 2 101 9.48e-15 72.0
MS.gene96514.t1 AT2G03710 42.000 100 50 3 9 100 2 101 9.56e-15 70.5
MS.gene96514.t1 AT2G03710 42.000 100 50 3 9 100 2 101 1.04e-14 71.6
MS.gene96514.t1 AT1G17310 52.632 76 34 1 8 83 58 131 1.12e-14 71.2
MS.gene96514.t1 AT5G15800 50.725 69 33 1 9 76 2 70 1.25e-14 71.6
MS.gene96514.t1 AT5G20240 47.143 70 35 1 9 76 2 71 1.30e-14 69.3
MS.gene96514.t1 AT5G20240 47.143 70 35 1 9 76 2 71 1.53e-14 70.5
MS.gene96514.t1 AT1G69120 46.377 69 36 1 9 76 2 70 1.64e-14 71.2
MS.gene96514.t1 AT5G65060 47.826 69 35 1 9 76 2 70 5.05e-14 68.6
MS.gene96514.t1 AT5G65060 47.826 69 35 1 9 76 2 70 5.33e-14 68.6
MS.gene96514.t1 AT5G65060 47.826 69 35 1 9 76 2 70 5.35e-14 68.6
MS.gene96514.t1 AT5G65070 42.169 83 44 2 9 90 2 81 5.82e-14 67.4
MS.gene96514.t1 AT2G22540 57.143 56 24 0 9 64 2 57 7.27e-14 68.9
MS.gene96514.t1 AT5G65070 31.210 157 77 6 9 138 2 154 7.53e-14 68.6
MS.gene96514.t1 AT1G71692 47.143 70 36 1 9 77 2 71 1.19e-13 68.2
MS.gene96514.t1 AT3G58780 47.692 65 34 0 2 66 10 74 1.28e-13 68.6
MS.gene96514.t1 AT3G58780 47.692 65 34 0 2 66 10 74 1.69e-13 68.6
MS.gene96514.t1 AT3G02310 46.377 69 36 1 9 76 2 70 1.73e-13 67.4
MS.gene96514.t1 AT1G47760 31.304 115 69 2 9 115 2 114 1.87e-13 67.0
MS.gene96514.t1 AT5G65070 42.169 83 44 2 9 90 2 81 1.97e-13 67.8
MS.gene96514.t1 AT1G24260 47.826 69 35 1 9 76 2 70 2.22e-13 67.8
MS.gene96514.t1 AT5G65070 42.169 83 44 2 9 90 2 81 2.31e-13 67.4
MS.gene96514.t1 AT1G24260 47.826 69 35 1 9 76 2 70 2.32e-13 67.8
MS.gene96514.t1 AT1G24260 47.826 69 35 1 9 76 2 70 2.38e-13 67.8
MS.gene96514.t1 AT1G28450 28.070 171 109 6 5 163 4 172 2.98e-13 66.6
MS.gene96514.t1 AT3G02310 46.377 69 36 1 9 76 2 70 3.18e-13 67.4
MS.gene96514.t1 AT5G65080 40.230 87 48 2 1 86 1 84 1.70e-12 64.3
MS.gene96514.t1 AT5G65070 49.123 57 29 0 9 65 2 58 2.25e-12 64.7
MS.gene96514.t1 AT4G37435 41.667 72 41 1 9 79 2 73 1.73e-11 61.6
MS.gene96514.t1 AT1G18750 37.662 77 46 1 9 83 2 78 2.05e-11 63.2
MS.gene96514.t1 AT1G18750 37.662 77 46 1 9 83 2 78 2.15e-11 63.2
MS.gene96514.t1 AT1G18750 37.662 77 46 1 9 83 2 78 2.23e-11 63.2
MS.gene96514.t1 AT5G65080 43.548 62 35 0 1 62 1 62 2.36e-11 61.6
MS.gene96514.t1 AT5G49490 38.636 88 47 2 5 85 41 128 6.78e-11 61.2
MS.gene96514.t1 AT2G26320 41.892 74 41 1 5 76 14 87 7.61e-11 58.2

Find 55 sgRNAs with CRISPR-Local

Find 60 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACCTTATTCATCTCATAAA+TGG 0.175011 5.1:+43191868 None:intergenic
GAACCATTTCCAACATAAAA+TGG 0.249437 5.1:+43191746 None:intergenic
ATTGCATGATGTCATCGTTT+TGG 0.268048 5.1:+43192038 None:intergenic
TCTATGATCGTTTCAACATT+TGG 0.289536 5.1:+43192085 None:intergenic
CAACATAAAATGGAAGGGTT+TGG 0.295108 5.1:+43191756 None:intergenic
GTTGAATCTTGTTGAGGATT+TGG 0.322565 5.1:+43191695 None:intergenic
CCTGATTTGTCTTTCGCACC+TGG 0.338707 5.1:+43191912 None:intergenic
AACATAAAATGGAAGGGTTT+GGG 0.353082 5.1:+43191757 None:intergenic
ATGTTGCAACCACATTTGTT+TGG 0.415267 5.1:-43191644 MS.gene96514:CDS
ACCTTATTCATCTCATAAAT+GGG 0.419947 5.1:+43191869 None:intergenic
TCCCATTTATGAGATGAATA+AGG 0.420859 5.1:-43191870 MS.gene96514:CDS
AGTGAGCTTTGCACCCTTTG+TGG 0.424656 5.1:-43192166 MS.gene96514:CDS
GTTGGAAATGGTTCATCCTC+TGG 0.431923 5.1:-43191737 MS.gene96514:CDS
TGTTGCTCAACATGCTGATA+AGG 0.451988 5.1:-43191801 MS.gene96514:CDS
TGCTGATAAGGTTGAAATGC+AGG 0.455758 5.1:-43191789 MS.gene96514:CDS
TTCAACAACTTGGGAGAAGA+AGG 0.459402 5.1:-43191620 MS.gene96514:CDS
CGCAATATATGCACCACAAA+GGG 0.465418 5.1:+43192153 None:intergenic
AACAAATGTGGTTGCAACAT+AGG 0.466580 5.1:+43191647 None:intergenic
TTTGTTTGGTTTCAACAACT+TGG 0.474369 5.1:-43191630 MS.gene96514:CDS
CCTTCTTGTATAATTCAAGT+TGG 0.484620 5.1:+43191846 None:intergenic
TGACATCATGCAATTAATTG+AGG 0.491229 5.1:-43192029 MS.gene96514:CDS
CCAGGTGCGAAAGACAAATC+AGG 0.504787 5.1:-43191912 MS.gene96514:CDS
GCTCGCGCACCTTGGCTCTA+CGG 0.510044 5.1:+43192002 None:intergenic
ACAAATGTGGTTGCAACATA+GGG 0.521813 5.1:+43191648 None:intergenic
GAAGGTGGACATGGTCCCCA+TGG 0.528388 5.1:-43191602 MS.gene96514:CDS
TTGTTTGGTTTCAACAACTT+GGG 0.531159 5.1:-43191629 MS.gene96514:CDS
GCCAAGGTGCGCGAGCTCAA+TGG 0.535008 5.1:-43191995 MS.gene96514:CDS
ACCATTGAGCTCGCGCACCT+TGG 0.535093 5.1:+43191994 None:intergenic
CCAACTTGAATTATACAAGA+AGG 0.537115 5.1:-43191846 MS.gene96514:CDS
CATTTCCAACATAAAATGGA+AGG 0.542188 5.1:+43191750 None:intergenic
GAGCTCAATGGTATATTGAC+TGG 0.544330 5.1:-43191983 MS.gene96514:CDS
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 5.1:-43192204 MS.gene96514:CDS
CCGTGAGAATGAGCTAATCC+AGG 0.557926 5.1:-43191930 MS.gene96514:CDS
ATTTCCAACATAAAATGGAA+GGG 0.561384 5.1:+43191751 None:intergenic
GGAAAGGTTGAATCTTGTTG+AGG 0.562205 5.1:+43191689 None:intergenic
GCTCATATCAAAAGAACCCA+TGG 0.571548 5.1:+43191585 None:intergenic
GGATTTGGCTGATGCTCAAG+AGG 0.571835 5.1:+43191710 None:intergenic
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 5.1:-43192205 MS.gene96514:CDS
ACTGGTATGAAAGATGCAAT+CGG 0.573096 5.1:-43191965 MS.gene96514:CDS
GCGTTAATCATATTCTCACC+TGG 0.578489 5.1:-43192133 MS.gene96514:CDS
TTGGGAGAAGAAGGTGGACA+TGG 0.601059 5.1:-43191611 MS.gene96514:CDS
CTCATATCAAAAGAACCCAT+GGG 0.612341 5.1:+43191586 None:intergenic
AACAACTTGGGAGAAGAAGG+TGG 0.615626 5.1:-43191617 MS.gene96514:CDS
TGTGCTTTAGCCATGTCAAG+CGG 0.619256 5.1:-43192295 None:intergenic
TCAAGCGGAAAGAAAACTCA+AGG 0.621333 5.1:-43192280 MS.gene96514:CDS
AAGGTGGACATGGTCCCCAT+GGG 0.627258 5.1:-43191601 MS.gene96514:CDS
CCTGGATTAGCTCATTCTCA+CGG 0.627343 5.1:+43191930 None:intergenic
CTTTCTTGAAGAGCCCACTA+CGG 0.627906 5.1:+43192191 None:intergenic
ACGCAATATATGCACCACAA+AGG 0.628806 5.1:+43192152 None:intergenic
AATGAAAATACTTTCTCACC+AGG 0.642771 5.1:+43192115 None:intergenic
GCTGATAAGGTTGAAATGCA+GGG 0.644380 5.1:-43191788 MS.gene96514:CDS
TGAGGATTACCGTAGAGCCA+AGG 0.649629 5.1:-43192011 MS.gene96514:CDS
ATGCTCAAGAGGCATGCCAG+AGG 0.675147 5.1:+43191721 None:intergenic
TTGTTGAAACCAAACAAATG+TGG 0.685209 5.1:+43191635 None:intergenic
TCATATCAAAAGAACCCATG+GGG 0.745957 5.1:+43191587 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! ACCTTATTCATCTCATAAAT+GGG + chr5.1:43192009-43192028 None:intergenic 25.0%
! ATTTCCAACATAAAATGGAA+GGG + chr5.1:43192127-43192146 None:intergenic 25.0%
AACATAAAATGGAAGGGTTT+GGG + chr5.1:43192121-43192140 None:intergenic 30.0%
AATGAAAATACTTTCTCACC+AGG + chr5.1:43191763-43191782 None:intergenic 30.0%
ATGAAAAAACTCTACTGGAA+AGG + chr5.1:43192205-43192224 None:intergenic 30.0%
CATTTCCAACATAAAATGGA+AGG + chr5.1:43192128-43192147 None:intergenic 30.0%
CCAACTTGAATTATACAAGA+AGG - chr5.1:43192029-43192048 MS.gene96514:CDS 30.0%
CCTTCTTGTATAATTCAAGT+TGG + chr5.1:43192032-43192051 None:intergenic 30.0%
GAACCATTTCCAACATAAAA+TGG + chr5.1:43192132-43192151 None:intergenic 30.0%
GACCTTATTCATCTCATAAA+TGG + chr5.1:43192010-43192029 None:intergenic 30.0%
TCCCATTTATGAGATGAATA+AGG - chr5.1:43192005-43192024 MS.gene96514:CDS 30.0%
TCTATGATCGTTTCAACATT+TGG + chr5.1:43191793-43191812 None:intergenic 30.0%
TGACATCATGCAATTAATTG+AGG - chr5.1:43191846-43191865 MS.gene96514:CDS 30.0%
TTGTTGAAACCAAACAAATG+TGG + chr5.1:43192243-43192262 None:intergenic 30.0%
! AGACAAATCAGGAACATTTT+TGG - chr5.1:43191974-43191993 MS.gene96514:CDS 30.0%
! CTTCCATTTTATGTTGGAAA+TGG - chr5.1:43192126-43192145 MS.gene96514:CDS 30.0%
! TTGTTTGGTTTCAACAACTT+GGG - chr5.1:43192246-43192265 MS.gene96514:CDS 30.0%
! TTTGTTTGGTTTCAACAACT+TGG - chr5.1:43192245-43192264 MS.gene96514:CDS 30.0%
!!! GGTGAGAAAGTATTTTCATT+TGG - chr5.1:43191763-43191782 MS.gene96514:CDS 30.0%
AACAAATGTGGTTGCAACAT+AGG + chr5.1:43192231-43192250 None:intergenic 35.0%
ACAAATGTGGTTGCAACATA+GGG + chr5.1:43192230-43192249 None:intergenic 35.0%
ACTGGTATGAAAGATGCAAT+CGG - chr5.1:43191910-43191929 MS.gene96514:CDS 35.0%
ATGTTGCAACCACATTTGTT+TGG - chr5.1:43192231-43192250 MS.gene96514:CDS 35.0%
CAACATAAAATGGAAGGGTT+TGG + chr5.1:43192122-43192141 None:intergenic 35.0%
GGGTTATGAAAAAACTCTAC+TGG + chr5.1:43192210-43192229 None:intergenic 35.0%
GTTGAATCTTGTTGAGGATT+TGG + chr5.1:43192183-43192202 None:intergenic 35.0%
! ATTGCATGATGTCATCGTTT+TGG + chr5.1:43191840-43191859 None:intergenic 35.0%
! CAAACCCTTCCATTTTATGT+TGG - chr5.1:43192120-43192139 MS.gene96514:CDS 35.0%
! TTGCATGATGTCATCGTTTT+GGG + chr5.1:43191839-43191858 None:intergenic 35.0%
!! CAAATCAGGAACATTTTTGG+TGG - chr5.1:43191977-43191996 MS.gene96514:CDS 35.0%
ACGCAATATATGCACCACAA+AGG + chr5.1:43191726-43191745 None:intergenic 40.0%
CGCAATATATGCACCACAAA+GGG + chr5.1:43191725-43191744 None:intergenic 40.0%
GAGCTCAATGGTATATTGAC+TGG - chr5.1:43191892-43191911 MS.gene96514:CDS 40.0%
GCGTTAATCATATTCTCACC+TGG - chr5.1:43191742-43191761 MS.gene96514:CDS 40.0%
GCTGATAAGGTTGAAATGCA+GGG - chr5.1:43192087-43192106 MS.gene96514:CDS 40.0%
GGAAAGGTTGAATCTTGTTG+AGG + chr5.1:43192189-43192208 None:intergenic 40.0%
TCAAGCGGAAAGAAAACTCA+AGG - chr5.1:43191595-43191614 MS.gene96514:CDS 40.0%
TGCTGATAAGGTTGAAATGC+AGG - chr5.1:43192086-43192105 MS.gene96514:CDS 40.0%
TGTTGCTCAACATGCTGATA+AGG - chr5.1:43192074-43192093 MS.gene96514:CDS 40.0%
TTCAACAACTTGGGAGAAGA+AGG - chr5.1:43192255-43192274 MS.gene96514:CDS 40.0%
AACAACTTGGGAGAAGAAGG+TGG - chr5.1:43192258-43192277 MS.gene96514:CDS 45.0%
CTTTCTTGAAGAGCCCACTA+CGG + chr5.1:43191687-43191706 None:intergenic 45.0%
GTTGGAAATGGTTCATCCTC+TGG - chr5.1:43192138-43192157 MS.gene96514:CDS 45.0%
!! ATGATGTCATCGTTTTGGGC+TGG + chr5.1:43191835-43191854 None:intergenic 45.0%
!! CCTGGATTAGCTCATTCTCA+CGG + chr5.1:43191948-43191967 None:intergenic 45.0%
AGTGAGCTTTGCACCCTTTG+TGG - chr5.1:43191709-43191728 MS.gene96514:CDS 50.0%
CCAGGTGCGAAAGACAAATC+AGG - chr5.1:43191963-43191982 MS.gene96514:CDS 50.0%
CCGTGAGAATGAGCTAATCC+AGG - chr5.1:43191945-43191964 MS.gene96514:CDS 50.0%
GGATTTGGCTGATGCTCAAG+AGG + chr5.1:43192168-43192187 None:intergenic 50.0%
TGAGGATTACCGTAGAGCCA+AGG - chr5.1:43191864-43191883 MS.gene96514:CDS 50.0%
TTGGGAGAAGAAGGTGGACA+TGG - chr5.1:43192264-43192283 MS.gene96514:CDS 50.0%
! CCTGATTTGTCTTTCGCACC+TGG + chr5.1:43191966-43191985 None:intergenic 50.0%
AAGGTGGACATGGTCCCCAT+GGG - chr5.1:43192274-43192293 MS.gene96514:CDS 55.0%
! ATGCTCAAGAGGCATGCCAG+AGG + chr5.1:43192157-43192176 None:intergenic 55.0%
!! ACTTTCTCGAAGCGCCGTAG+TGG - chr5.1:43191670-43191689 MS.gene96514:CDS 55.0%
!! CTTTCTCGAAGCGCCGTAGT+GGG - chr5.1:43191671-43191690 MS.gene96514:CDS 55.0%
ACCATTGAGCTCGCGCACCT+TGG + chr5.1:43191884-43191903 None:intergenic 60.0%
GAAGGTGGACATGGTCCCCA+TGG - chr5.1:43192273-43192292 MS.gene96514:CDS 60.0%
GCCAAGGTGCGCGAGCTCAA+TGG - chr5.1:43191880-43191899 MS.gene96514:CDS 65.0%
!! GCTCGCGCACCTTGGCTCTA+CGG + chr5.1:43191876-43191895 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 43191592 43192305 43191592 ID=MS.gene96514
chr5.1 mRNA 43191592 43192305 43191592 ID=MS.gene96514.t1;Parent=MS.gene96514
chr5.1 exon 43191592 43192305 43191592 ID=MS.gene96514.t1.exon1;Parent=MS.gene96514.t1
chr5.1 CDS 43191592 43192305 43191592 ID=cds.MS.gene96514.t1;Parent=MS.gene96514.t1
Gene Sequence

>MS.gene96514

ATGTCAAGCGGAAAGAAAACTCAAGGTCGTAAAAAGATTGAGATGAAAAAGATGAGCAATGAAAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCTAGTGAGCTTTGCACCCTTTGTGGTGCATATATTGCGTTAATCATATTCTCACCTGGTGAGAAAGTATTTTCATTTGGTCATCCAAATGTTGAAACGATCATAGATCGTTATCTCTCTCAAGTTCCAGCCCAAAACGATGACATCATGCAATTAATTGAGGATTACCGTAGAGCCAAGGTGCGCGAGCTCAATGGTATATTGACTGGTATGAAAGATGCAATCGGCATCAATAAGAACCGTGAGAATGAGCTAATCCAGGTGCGAAAGACAAATCAGGAACATTTTTGGTGGACTCGTCCCATTTATGAGATGAATAAGGTCCAACTTGAATTATACAAGAAGGCTTTAGATGATCTTCTTAAACTTGTTGCTCAACATGCTGATAAGGTTGAAATGCAGGGTACTTCTACCCAAACCCTTCCATTTTATGTTGGAAATGGTTCATCCTCTGGCATGCCTCTTGAGCATCAGCCAAATCCTCAACAAGATTCAACCTTTCCAGTAGAGTTTTTTCATAACCCTATGTTGCAACCACATTTGTTTGGTTTCAACAACTTGGGAGAAGAAGGTGGACATGGTCCCCATGGGTTCTTTTGA
Protein sequence

>MS.gene96514.t1

MSSGKKTQGRKKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGAYIALIIFSPGEKVFSFGHPNVETIIDRYLSQVPAQNDDIMQLIEDYRRAKVRELNGILTGMKDAIGINKNRENELIQVRKTNQEHFWWTRPIYEMNKVQLELYKKALDDLLKLVAQHADKVEMQGTSTQTLPFYVGNGSSSGMPLEHQPNPQQDSTFPVEFFHNPMLQPHLFGFNNLGEEGGHGPHGFF