AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene96515

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96515.t1 MTR_5g055100 86.920 237 31 0 1 237 1 237 1.69e-154 429
MS.gene96515.t1 MTR_2g085280 79.661 236 48 0 1 236 1 236 1.34e-139 391
MS.gene96515.t1 MTR_2g085250 79.661 236 48 0 1 236 1 236 6.30e-139 389
MS.gene96515.t1 MTR_5g045560 75.949 237 57 0 1 237 1 237 5.37e-121 344
MS.gene96515.t1 MTR_5g053390 74.667 225 57 0 1 225 1 225 6.75e-120 341
MS.gene96515.t1 MTR_1g077360 70.222 225 67 0 1 225 1 225 1.35e-111 320
MS.gene96515.t1 MTR_1g075600 69.778 225 68 0 1 225 1 225 3.88e-111 319
MS.gene96515.t1 MTR_8g043650 62.869 237 88 0 1 237 1 237 6.09e-109 313
MS.gene96515.t1 MTR_1g105920 67.123 219 72 0 1 219 1 219 5.87e-108 311
MS.gene96515.t1 MTR_1g105910 62.222 225 85 0 1 225 1 225 8.59e-103 298
MS.gene96515.t1 MTR_1g012570 64.557 237 84 0 1 237 1 237 1.21e-102 297
MS.gene96515.t1 MTR_2g030740 63.713 237 86 0 1 237 1 237 3.12e-102 296
MS.gene96515.t1 MTR_3g052920 62.557 219 82 0 1 219 1 219 9.18e-98 285
MS.gene96515.t1 MTR_1g105905 61.364 220 85 0 18 237 1 220 3.95e-97 283
MS.gene96515.t1 MTR_3g030770 61.702 235 72 3 1 225 1 227 4.94e-96 280
MS.gene96515.t1 MTR_1g108510 60.851 235 74 3 1 225 1 227 7.55e-94 275
MS.gene96515.t1 MTR_0121s0080 57.806 237 99 1 1 237 1 236 1.36e-93 274
MS.gene96515.t1 MTR_2g093190 60.426 235 75 3 1 225 1 227 3.79e-91 268
MS.gene96515.t1 MTR_1g108580 56.118 237 91 2 1 237 1 224 6.93e-87 257
MS.gene96515.t1 MTR_3g052870 57.991 219 73 2 1 219 1 200 1.32e-83 248
MS.gene96515.t1 MTR_1g106070 63.187 182 67 0 1 182 1 182 2.78e-80 239
MS.gene96515.t1 MTR_7g062350 52.119 236 111 2 3 237 14 248 9.55e-79 237
MS.gene96515.t1 MTR_1g075570 61.236 178 55 1 18 195 1 164 8.86e-62 191
MS.gene96515.t1 MTR_3g080940 48.876 178 91 0 1 178 1 178 1.68e-52 169
MS.gene96515.t1 MTR_0121s0100 64.062 128 46 0 1 128 1 128 9.04e-51 162
MS.gene96515.t1 MTR_3g030780 65.487 113 39 0 1 113 1 113 4.79e-49 157
MS.gene96515.t1 MTR_3g067910 73.529 102 27 0 21 122 2 103 4.22e-48 154
MS.gene96515.t1 MTR_3g067875 89.286 56 6 0 18 73 1 56 6.66e-30 106
MS.gene96515.t1 MTR_8g086290 36.747 166 95 2 5 167 8 166 3.51e-29 108
MS.gene96515.t1 MTR_7g028448 39.610 154 81 2 5 158 8 149 2.42e-28 105
MS.gene96515.t1 MTR_4g036915 39.610 154 81 2 5 158 8 149 2.42e-28 105
MS.gene96515.t1 MTR_2g105290 32.759 174 105 2 5 174 8 173 3.80e-27 102
MS.gene96515.t1 MTR_3g067915 54.945 91 41 0 33 123 3 93 3.89e-26 97.8
MS.gene96515.t1 MTR_3g067870 73.016 63 17 0 16 78 83 145 1.15e-24 95.9
MS.gene96515.t1 MTR_1g047550 50.649 77 38 0 9 85 2 78 7.76e-23 91.7
MS.gene96515.t1 MTR_8g079502 53.521 71 33 0 9 79 2 72 1.21e-22 91.3
MS.gene96515.t1 MTR_1g108500 58.537 82 13 1 22 103 110 170 1.68e-22 94.4
MS.gene96515.t1 MTR_4g131030 49.367 79 40 0 9 87 2 80 3.69e-22 90.9
MS.gene96515.t1 MTR_8g051580 49.367 79 40 0 9 87 2 80 4.93e-21 87.0
MS.gene96515.t1 MTR_1g054265 46.835 79 42 0 9 87 2 80 6.16e-21 86.7
MS.gene96515.t1 MTR_8g046350 33.951 162 95 4 9 165 2 156 6.24e-21 86.3
MS.gene96515.t1 MTR_1g063160 38.679 106 63 1 9 112 2 107 2.37e-20 85.1
MS.gene96515.t1 MTR_4g127140 34.595 185 99 5 5 175 8 184 1.37e-19 83.6
MS.gene96515.t1 MTR_4g093970 45.000 100 46 2 10 101 29 127 1.03e-18 82.4
MS.gene96515.t1 MTR_4g094638 53.623 69 32 0 9 77 2 70 1.70e-18 80.5
MS.gene96515.t1 MTR_3g005530 51.471 68 33 0 9 76 2 69 2.73e-18 80.9
MS.gene96515.t1 MTR_4g094632 52.174 69 33 0 9 77 2 70 6.23e-18 78.2
MS.gene96515.t1 MTR_4g102530 50.000 72 36 0 10 81 3 74 1.10e-17 79.0
MS.gene96515.t1 MTR_3g452380 45.000 80 44 0 3 82 11 90 1.38e-17 79.3
MS.gene96515.t1 MTR_8g033270 50.633 79 37 1 9 85 2 80 2.91e-17 78.6
MS.gene96515.t1 MTR_1g053070 54.412 68 31 0 9 76 2 69 5.42e-17 77.8
MS.gene96515.t1 MTR_4g109830 52.174 69 32 1 9 76 2 70 6.84e-17 77.4
MS.gene96515.t1 MTR_5g066180 50.000 68 34 0 9 76 2 69 1.18e-16 76.6
MS.gene96515.t1 MTR_8g087860 50.000 68 34 0 9 76 18 85 2.06e-16 76.3
MS.gene96515.t1 MTR_7g075870 48.148 81 38 1 10 86 3 83 2.26e-16 75.5
MS.gene96515.t1 MTR_0003s0590 52.941 68 32 0 9 76 2 69 2.85e-16 75.9
MS.gene96515.t1 MTR_6g464720 52.174 69 32 1 9 76 2 70 3.65e-16 75.5
MS.gene96515.t1 MTR_1g101970 52.941 68 32 0 9 76 2 69 4.55e-16 73.9
MS.gene96515.t1 MTR_8g033220 46.667 75 40 0 10 84 3 77 4.70e-16 74.7
MS.gene96515.t1 MTR_8g033220 46.667 75 40 0 10 84 3 77 5.02e-16 74.7
MS.gene96515.t1 MTR_2g017865 50.000 68 34 0 9 76 17 84 5.13e-16 75.5
MS.gene96515.t1 MTR_4g084740 49.367 79 38 2 9 86 2 79 6.83e-16 75.9
MS.gene96515.t1 MTR_5g032150 50.000 68 34 0 9 76 2 69 7.38e-16 74.3
MS.gene96515.t1 MTR_2g009890 43.421 76 43 0 9 84 2 77 8.15e-16 75.1
MS.gene96515.t1 MTR_3g102570 35.294 136 81 3 9 143 2 131 8.40e-16 75.5
MS.gene96515.t1 MTR_5g032520 50.000 68 34 0 9 76 2 69 9.37e-16 73.9
MS.gene96515.t1 MTR_5g031000 45.588 68 37 0 9 76 2 69 1.91e-15 73.2
MS.gene96515.t1 MTR_5g031000 45.588 68 37 0 9 76 2 69 1.98e-15 73.6
MS.gene96515.t1 MTR_6g015975 50.725 69 33 1 9 76 2 70 2.36e-15 73.2
MS.gene96515.t1 MTR_7g016600 50.725 69 33 1 9 76 2 70 3.28e-15 72.8
MS.gene96515.t1 MTR_8g066260 47.826 69 35 1 9 76 2 70 3.33e-15 72.8
MS.gene96515.t1 MTR_7g075870 47.561 82 38 2 10 86 3 84 4.29e-15 72.0
MS.gene96515.t1 MTR_5g021270 51.429 70 32 1 9 76 2 71 4.42e-15 72.4
MS.gene96515.t1 MTR_7g016630 45.833 72 38 1 9 79 2 73 4.66e-15 72.8
MS.gene96515.t1 MTR_5g021270 51.429 70 32 1 9 76 2 71 4.77e-15 72.0
MS.gene96515.t1 MTR_5g046790 47.826 69 35 1 9 76 2 70 5.14e-15 71.6
MS.gene96515.t1 MTR_3g088615 32.857 140 68 5 9 127 2 136 6.77e-15 70.9
MS.gene96515.t1 MTR_1g038300 46.429 84 39 2 9 86 2 85 7.98e-15 71.6
MS.gene96515.t1 MTR_7g075850 46.341 82 41 2 9 87 2 83 9.43e-15 71.6
MS.gene96515.t1 MTR_2g461710 53.571 56 26 0 9 64 2 57 1.19e-14 67.0
MS.gene96515.t1 MTR_1g029670 50.000 66 32 1 9 74 2 66 1.35e-14 70.1
MS.gene96515.t1 MTR_5g046870 49.275 69 34 1 9 76 2 70 1.92e-14 67.8
MS.gene96515.t1 MTR_5g066960 49.123 57 29 0 9 65 2 58 2.83e-14 65.9
MS.gene96515.t1 MTR_3g113030 47.619 63 33 0 9 71 2 64 1.09e-13 68.6
MS.gene96515.t1 MTR_8g097090 47.826 69 35 1 9 76 2 70 1.81e-13 68.2
MS.gene96515.t1 MTR_4g109810 53.571 56 26 0 9 64 2 57 1.91e-13 67.8
MS.gene96515.t1 MTR_3g084980 53.571 56 26 0 9 64 2 57 2.63e-13 67.4
MS.gene96515.t1 MTR_8g022970 29.825 171 93 5 2 158 9 166 3.14e-13 66.2
MS.gene96515.t1 MTR_4g093030 29.605 152 82 4 9 135 2 153 9.24e-13 64.3
MS.gene96515.t1 MTR_4g051538 27.979 193 114 7 1 181 1 180 1.91e-12 65.1
MS.gene96515.t1 MTR_3g437790 30.201 149 73 5 26 158 30 163 2.08e-12 63.9
MS.gene96515.t1 MTR_4g036050 41.429 70 40 1 9 77 2 71 8.93e-12 62.0
MS.gene96515.t1 MTR_4g036050 41.429 70 40 1 9 77 2 71 9.82e-12 62.4
MS.gene96515.t1 MTR_4g036050 41.429 70 40 1 9 77 2 71 1.04e-11 62.4
MS.gene96515.t1 MTR_4g036050 41.429 70 40 1 9 77 2 71 1.19e-11 62.4
MS.gene96515.t1 MTR_4g108720 41.558 77 43 1 9 83 2 78 8.47e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96515.t1 AT5G60440 50.000 190 84 5 5 190 3 185 1.60e-50 167
MS.gene96515.t1 AT1G65360 40.444 225 119 6 5 223 3 218 1.79e-41 141
MS.gene96515.t1 AT2G24840 48.101 158 77 2 9 163 63 218 3.16e-38 134
MS.gene96515.t1 AT1G01530 43.005 193 92 6 4 191 2 181 6.26e-38 133
MS.gene96515.t1 AT4G36590 43.373 166 80 4 5 160 3 164 6.81e-35 125
MS.gene96515.t1 AT3G04100 31.056 161 107 2 2 158 7 167 1.21e-25 100
MS.gene96515.t1 AT1G72350 34.637 179 73 6 9 182 43 182 1.15e-21 90.1
MS.gene96515.t1 AT2G34440 50.704 71 35 0 9 79 2 72 5.33e-21 87.0
MS.gene96515.t1 AT3G66656 55.882 68 30 0 9 76 2 69 1.51e-20 85.9
MS.gene96515.t1 AT4G37940 32.000 175 84 5 9 154 2 170 3.61e-19 83.2
MS.gene96515.t1 AT5G51870 55.556 72 32 0 5 76 21 92 6.33e-19 82.0
MS.gene96515.t1 AT2G45660 54.412 68 31 0 10 77 3 70 9.44e-19 80.5
MS.gene96515.t1 AT2G45650 55.882 68 30 0 9 76 2 69 9.96e-19 82.8
MS.gene96515.t1 AT1G28460 28.916 166 111 2 5 163 4 169 2.17e-18 80.1
MS.gene96515.t1 AT2G45660 54.412 68 31 0 10 77 3 70 2.83e-18 80.5
MS.gene96515.t1 AT5G51870 56.716 67 29 0 10 76 3 69 3.70e-18 79.3
MS.gene96515.t1 AT4G37940 31.694 183 88 6 9 154 2 184 4.05e-18 80.5
MS.gene96515.t1 AT5G51870 56.716 67 29 0 10 76 3 69 5.20e-18 79.7
MS.gene96515.t1 AT4G22950 48.611 72 37 0 10 81 3 74 6.03e-18 79.0
MS.gene96515.t1 AT5G51870 55.714 70 31 0 7 76 10 79 7.02e-18 79.7
MS.gene96515.t1 AT4G09960 50.000 68 34 0 9 76 2 69 7.42e-18 79.7
MS.gene96515.t1 AT5G23260 36.913 149 66 5 5 125 14 162 7.46e-18 80.5
MS.gene96515.t1 AT3G57230 27.854 219 107 8 9 181 2 215 7.47e-18 80.1
MS.gene96515.t1 AT3G57230 27.854 219 107 8 9 181 2 215 7.47e-18 80.1
MS.gene96515.t1 AT4G09960 50.000 68 34 0 9 76 2 69 9.04e-18 79.7
MS.gene96515.t1 AT4G09960 50.000 68 34 0 9 76 3 70 9.30e-18 79.7
MS.gene96515.t1 AT5G51870 56.716 67 29 0 10 76 3 69 9.34e-18 79.3
MS.gene96515.t1 AT4G09960 50.000 68 34 0 9 76 12 79 1.14e-17 79.7
MS.gene96515.t1 AT1G29962 27.119 177 115 4 5 167 4 180 1.31e-17 78.2
MS.gene96515.t1 AT5G10140 48.193 83 39 2 9 90 2 81 1.32e-17 77.8
MS.gene96515.t1 AT4G09960 50.000 68 34 0 9 76 28 95 1.79e-17 79.3
MS.gene96515.t1 AT5G10140 48.193 83 39 2 9 90 2 81 1.91e-17 77.8
MS.gene96515.t1 AT4G22950 49.296 71 36 0 10 80 3 73 1.96e-17 78.6
MS.gene96515.t1 AT4G22950 49.296 71 36 0 10 80 3 73 1.96e-17 78.6
MS.gene96515.t1 AT5G10140 48.193 83 39 2 9 90 2 81 2.24e-17 77.8
MS.gene96515.t1 AT5G23260 36.552 145 64 4 9 125 2 146 2.48e-17 79.0
MS.gene96515.t1 AT5G10140 48.193 83 39 2 9 90 2 81 2.85e-17 77.4
MS.gene96515.t1 AT3G57230 47.059 68 36 0 9 76 2 69 3.65e-17 75.9
MS.gene96515.t1 AT5G23260 46.739 92 43 2 5 90 14 105 3.82e-17 78.6
MS.gene96515.t1 AT4G09960 50.000 68 34 0 9 76 97 164 3.87e-17 79.3
MS.gene96515.t1 AT3G57390 54.412 68 31 0 9 76 2 69 4.42e-17 77.8
MS.gene96515.t1 AT2G22630 30.601 183 90 4 9 154 2 184 5.37e-17 77.4
MS.gene96515.t1 AT2G22630 30.601 183 90 4 9 154 2 184 5.37e-17 77.4
MS.gene96515.t1 AT5G62165 52.239 67 32 0 10 76 3 69 6.13e-17 75.9
MS.gene96515.t1 AT5G62165 52.239 67 32 0 10 76 3 69 6.13e-17 75.9
MS.gene96515.t1 AT5G62165 52.239 67 32 0 10 76 3 69 6.13e-17 75.9
MS.gene96515.t1 AT5G62165 52.239 67 32 0 10 76 3 69 6.13e-17 74.3
MS.gene96515.t1 AT5G62165 52.239 67 32 0 10 76 3 69 7.72e-17 75.5
MS.gene96515.t1 AT5G62165 52.239 67 32 0 10 76 3 69 7.72e-17 75.5
MS.gene96515.t1 AT5G62165 52.239 67 32 0 10 76 3 69 7.72e-17 75.5
MS.gene96515.t1 AT5G62165 52.239 67 32 0 10 76 3 69 7.72e-17 75.5
MS.gene96515.t1 AT5G62165 52.239 67 32 0 10 76 3 69 7.72e-17 75.5
MS.gene96515.t1 AT3G57390 54.412 68 31 0 9 76 2 69 9.91e-17 77.4
MS.gene96515.t1 AT5G23260 47.727 88 40 2 9 90 2 89 1.29e-16 76.6
MS.gene96515.t1 AT4G18960 48.000 75 39 0 2 76 11 85 1.31e-16 77.0
MS.gene96515.t1 AT2G22540 50.000 68 34 0 9 76 2 69 1.53e-16 76.6
MS.gene96515.t1 AT2G22540 50.000 68 34 0 9 76 2 69 1.53e-16 76.6
MS.gene96515.t1 AT2G42830 46.053 76 41 0 1 76 9 84 1.62e-16 76.6
MS.gene96515.t1 AT5G62165 52.239 67 32 0 10 76 3 69 1.71e-16 75.5
MS.gene96515.t1 AT5G62165 52.239 67 32 0 10 76 3 69 1.71e-16 75.5
MS.gene96515.t1 AT2G42830 46.053 76 41 0 1 76 9 84 1.83e-16 76.3
MS.gene96515.t1 AT5G62165 52.239 67 32 0 10 76 3 69 1.84e-16 75.9
MS.gene96515.t1 AT5G62165 52.239 67 32 0 10 76 3 69 1.84e-16 75.9
MS.gene96515.t1 AT5G62165 52.239 67 32 0 10 76 3 69 1.84e-16 75.9
MS.gene96515.t1 AT4G37940 48.529 68 35 0 9 76 2 69 1.98e-16 74.7
MS.gene96515.t1 AT3G58780 49.296 71 36 0 6 76 14 84 2.11e-16 76.3
MS.gene96515.t1 AT4G24540 52.941 68 32 0 9 76 2 69 2.35e-16 75.5
MS.gene96515.t1 AT3G54340 50.000 70 33 1 9 76 2 71 2.48e-16 75.9
MS.gene96515.t1 AT3G58780 49.296 71 36 0 6 76 20 90 2.52e-16 76.3
MS.gene96515.t1 AT5G13790 51.471 68 33 0 9 76 2 69 2.55e-16 76.3
MS.gene96515.t1 AT5G13790 51.471 68 33 0 9 76 2 69 2.61e-16 76.3
MS.gene96515.t1 AT3G30260 30.822 146 71 4 9 124 2 147 3.11e-16 75.9
MS.gene96515.t1 AT5G51860 52.239 67 32 0 10 76 3 69 3.96e-16 74.7
MS.gene96515.t1 AT3G58780 49.296 71 36 0 6 76 14 84 4.30e-16 75.9
MS.gene96515.t1 AT1G77980 42.697 89 50 1 9 96 2 90 4.44e-16 76.6
MS.gene96515.t1 AT5G51860 52.239 67 32 0 10 76 3 69 5.59e-16 74.3
MS.gene96515.t1 AT5G65050 50.725 69 33 1 9 76 2 70 8.82e-16 73.2
MS.gene96515.t1 AT1G22130 39.394 99 59 1 9 106 2 100 1.07e-15 75.5
MS.gene96515.t1 AT3G61120 51.471 68 33 0 9 76 2 69 1.55e-15 73.9
MS.gene96515.t1 AT5G60910 49.275 69 34 1 9 76 2 70 1.96e-15 73.6
MS.gene96515.t1 AT1G77950 46.053 76 39 2 9 83 2 76 2.08e-15 73.6
MS.gene96515.t1 AT1G77950 46.053 76 39 2 9 83 2 76 2.08e-15 73.6
MS.gene96515.t1 AT1G77950 46.053 76 39 2 9 83 2 76 2.08e-15 73.6
MS.gene96515.t1 AT1G77950 46.053 76 39 2 9 83 2 76 2.08e-15 73.6
MS.gene96515.t1 AT5G65050 50.725 69 33 1 9 76 2 70 2.08e-15 72.4
MS.gene96515.t1 AT5G65050 50.725 69 33 1 9 76 2 70 2.13e-15 72.0
MS.gene96515.t1 AT5G65050 50.725 69 33 1 9 76 2 70 2.20e-15 72.4
MS.gene96515.t1 AT2G14210 49.275 69 34 1 9 76 2 70 2.27e-15 73.2
MS.gene96515.t1 AT2G14210 49.275 69 34 1 9 76 2 70 2.79e-15 72.8
MS.gene96515.t1 AT4G11880 48.611 72 36 1 10 80 3 74 3.69e-15 71.6
MS.gene96515.t1 AT4G11880 48.611 72 36 1 10 80 3 74 3.69e-15 71.6
MS.gene96515.t1 AT1G17310 52.632 76 34 1 8 83 47 120 4.38e-15 72.0
MS.gene96515.t1 AT5G15800 50.725 69 33 1 9 76 2 70 5.11e-15 72.4
MS.gene96515.t1 AT1G26310 46.377 69 36 1 9 76 2 70 5.38e-15 72.4
MS.gene96515.t1 AT4G11880 48.611 72 36 1 10 80 3 74 5.66e-15 72.0
MS.gene96515.t1 AT4G11880 48.611 72 36 1 10 80 3 74 5.66e-15 72.0
MS.gene96515.t1 AT2G03710 42.000 100 50 3 9 100 2 101 6.35e-15 70.9
MS.gene96515.t1 AT1G69120 46.377 69 36 1 9 76 2 70 6.49e-15 72.0
MS.gene96515.t1 AT1G17310 52.632 76 34 1 8 83 58 131 6.56e-15 71.6
MS.gene96515.t1 AT2G03710 42.000 100 50 3 9 100 2 101 7.61e-15 72.0
MS.gene96515.t1 AT2G03710 42.000 100 50 3 9 100 2 101 7.94e-15 72.0
MS.gene96515.t1 AT5G15800 50.725 69 33 1 9 76 2 70 8.67e-15 72.0
MS.gene96515.t1 AT1G69120 46.377 69 36 1 9 76 2 70 1.20e-14 71.6
MS.gene96515.t1 AT1G28450 27.811 169 112 4 5 163 4 172 1.26e-14 70.1
MS.gene96515.t1 AT5G20240 47.143 70 35 1 9 76 2 71 1.34e-14 69.3
MS.gene96515.t1 AT5G65060 49.275 69 34 1 9 76 2 70 1.49e-14 70.1
MS.gene96515.t1 AT5G65060 49.275 69 34 1 9 76 2 70 1.58e-14 70.1
MS.gene96515.t1 AT5G65060 49.275 69 34 1 9 76 2 70 1.59e-14 70.1
MS.gene96515.t1 AT5G20240 47.143 70 35 1 9 76 2 71 1.65e-14 70.5
MS.gene96515.t1 AT2G22540 57.143 56 24 0 9 64 2 57 3.68e-14 69.7
MS.gene96515.t1 AT5G65070 42.169 83 44 2 9 90 2 81 4.14e-14 67.8
MS.gene96515.t1 AT1G71692 47.143 70 36 1 9 77 2 71 6.71e-14 68.6
MS.gene96515.t1 AT5G65070 42.169 83 44 2 9 90 2 81 7.76e-14 68.2
MS.gene96515.t1 AT3G58780 50.820 61 30 0 6 66 14 74 1.11e-13 68.6
MS.gene96515.t1 AT3G02310 46.377 69 36 1 9 76 2 70 1.14e-13 67.8
MS.gene96515.t1 AT3G58780 50.820 61 30 0 6 66 14 74 1.50e-13 68.6
MS.gene96515.t1 AT5G65070 42.169 83 44 2 9 90 2 81 1.60e-13 68.2
MS.gene96515.t1 AT1G24260 55.357 56 25 0 9 64 2 57 1.65e-13 68.2
MS.gene96515.t1 AT5G65070 42.169 83 44 2 9 90 2 81 1.66e-13 67.8
MS.gene96515.t1 AT1G24260 47.826 69 35 1 9 76 2 70 1.70e-13 68.2
MS.gene96515.t1 AT1G24260 47.826 69 35 1 9 76 2 70 1.79e-13 68.2
MS.gene96515.t1 AT1G47760 33.333 102 60 1 9 102 2 103 1.79e-13 67.0
MS.gene96515.t1 AT3G02310 46.377 69 36 1 9 76 2 70 1.99e-13 68.2
MS.gene96515.t1 AT5G65080 40.230 87 48 2 1 86 1 84 1.23e-12 64.7
MS.gene96515.t1 AT5G65070 49.123 57 29 0 9 65 2 58 1.64e-12 65.1
MS.gene96515.t1 AT4G37435 43.056 72 40 1 9 79 2 73 6.87e-12 62.8
MS.gene96515.t1 AT1G18750 37.662 77 46 1 9 83 2 78 1.07e-11 63.9
MS.gene96515.t1 AT1G18750 37.662 77 46 1 9 83 2 78 1.12e-11 64.3
MS.gene96515.t1 AT1G18750 37.662 77 46 1 9 83 2 78 1.12e-11 63.9
MS.gene96515.t1 AT5G65080 43.548 62 35 0 1 62 1 62 1.44e-11 62.0
MS.gene96515.t1 AT2G26320 41.892 74 41 1 5 76 14 87 3.40e-11 58.9
MS.gene96515.t1 AT5G49490 37.500 96 52 3 5 93 41 135 4.57e-11 61.6
MS.gene96515.t1 AT5G49420 37.931 87 49 2 5 86 3 89 5.87e-11 61.6
MS.gene96515.t1 AT1G46408 43.836 73 37 2 10 78 5 77 6.19e-11 61.2

Find 54 sgRNAs with CRISPR-Local

Find 57 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGCATGATGTCATCATTT+TGG 0.109779 5.1:+43158917 None:intergenic
GACCTTATTCATCTCATAAA+TGG 0.175011 5.1:+43158747 None:intergenic
GAACCATTTACAACATAAAA+TGG 0.248337 5.1:+43158625 None:intergenic
TCTATGATCGTTTCAACATT+TGG 0.289536 5.1:+43158964 None:intergenic
GCTGAATCTTGTTGAGGATT+TGG 0.301044 5.1:+43158574 None:intergenic
CAACATAAAATGGAAGGGTT+TGG 0.302139 5.1:+43158635 None:intergenic
TTGTTGAAACCAAACAAATA+AGG 0.314433 5.1:+43158514 None:intergenic
ATGTTGCAACCTTATTTGTT+TGG 0.345480 5.1:-43158523 MS.gene96515:CDS
AACATAAAATGGAAGGGTTT+GGG 0.360113 5.1:+43158636 None:intergenic
AGATAAATCAGGAACAGTTT+TGG 0.363448 5.1:-43158780 MS.gene96515:CDS
TTGTTTGGTTTCAACAATAT+AGG 0.376703 5.1:-43158508 MS.gene96515:CDS
TGAATTATACAAGAAGGCTT+TGG 0.386209 5.1:-43158719 MS.gene96515:CDS
ACCTTATTCATCTCATAAAT+GGG 0.419947 5.1:+43158748 None:intergenic
TCCCATTTATGAGATGAATA+AGG 0.420859 5.1:-43158749 MS.gene96515:CDS
AGTGAGCTTTGCACCCTTTG+TGG 0.424656 5.1:-43159045 MS.gene96515:CDS
AACAAATAAGGTTGCAACAT+AGG 0.449382 5.1:+43158526 None:intergenic
CCTGATTTATCTTTCGCACC+TGG 0.470215 5.1:+43158791 None:intergenic
CCAGGTGCGAAAGATAAATC+AGG 0.478066 5.1:-43158791 MS.gene96515:CDS
CCTTCTTGTATAATTCAAGT+TGG 0.484620 5.1:+43158725 None:intergenic
ACAAATAAGGTTGCAACATA+GGG 0.494926 5.1:+43158527 None:intergenic
TGACATCATGCAATTAATTG+AGG 0.500210 5.1:-43158908 MS.gene96515:CDS
GCTCGCGCACCTTGGCTCTA+CGG 0.510044 5.1:+43158881 None:intergenic
TTCAACAATATAGGAGAAGA+AGG 0.511518 5.1:-43158499 MS.gene96515:CDS
ATTATACAAGAAGGCTTTGG+AGG 0.515397 5.1:-43158716 MS.gene96515:CDS
AGCAATATATGCACCACAAA+GGG 0.515612 5.1:+43159032 None:intergenic
GAAGGTGGACATGGTCCCCA+TGG 0.528388 5.1:-43158481 MS.gene96515:CDS
GCCCATATCAAAAGAACCCA+TGG 0.534752 5.1:+43158464 None:intergenic
GCCAAGGTGCGCGAGCTCAA+TGG 0.535008 5.1:-43158874 MS.gene96515:CDS
ACCATTGAGCTCGCGCACCT+TGG 0.535093 5.1:+43158873 None:intergenic
CCAACTTGAATTATACAAGA+AGG 0.537115 5.1:-43158725 MS.gene96515:CDS
GAGCTCAATGGTATATTGAC+TGG 0.544330 5.1:-43158862 MS.gene96515:CDS
CATTTACAACATAAAATGGA+AGG 0.549969 5.1:+43158629 None:intergenic
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 5.1:-43159083 MS.gene96515:CDS
CCGTGAGAATGAGCTAATCC+AGG 0.557926 5.1:-43158809 MS.gene96515:CDS
GGATTTGGCTGATGCTCAAG+AGG 0.568099 5.1:+43158589 None:intergenic
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 5.1:-43159084 MS.gene96515:CDS
ATTTACAACATAAAATGGAA+GGG 0.573802 5.1:+43158630 None:intergenic
TGCTGATGGAGTTGAAATGC+AGG 0.574822 5.1:-43158668 MS.gene96515:CDS
GGAAAGGCTGAATCTTGTTG+AGG 0.582164 5.1:+43158568 None:intergenic
CTTGTTGCACAACATGCTGA+TGG 0.603499 5.1:-43158682 MS.gene96515:CDS
CCCATATCAAAAGAACCCAT+GGG 0.612341 5.1:+43158465 None:intergenic
AATGAAAATACTTTCTCACT+AGG 0.614392 5.1:+43158994 None:intergenic
TGTGCTTTAGCCATGTCAAG+CGG 0.619256 5.1:-43159174 None:intergenic
ATAGGAGAAGAAGGTGGACA+TGG 0.621762 5.1:-43158490 MS.gene96515:CDS
AAGGTGGACATGGTCCCCAT+GGG 0.627258 5.1:-43158480 MS.gene96515:CDS
CCTGGATTAGCTCATTCTCA+CGG 0.627343 5.1:+43158809 None:intergenic
CTTTCTTGAAGAGCCCACTA+CGG 0.627906 5.1:+43159070 None:intergenic
GAGCAATATATGCACCACAA+AGG 0.629097 5.1:+43159031 None:intergenic
TGAGGATTACCGTAGAGCCA+AGG 0.649629 5.1:-43158890 MS.gene96515:CDS
ATGCTCAAGAGGAATGCTAG+AGG 0.682270 5.1:+43158600 None:intergenic
TCAAGCGGAAAGAAAACACA+AGG 0.684671 5.1:-43159159 MS.gene96515:CDS
AACAATATAGGAGAAGAAGG+TGG 0.684766 5.1:-43158496 MS.gene96515:CDS
CCATATCAAAAGAACCCATG+GGG 0.712233 5.1:+43158466 None:intergenic
GCTGATGGAGTTGAAATGCA+GGG 0.727418 5.1:-43158667 MS.gene96515:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTACAACATAAAATGGAA+GGG + chr5.1:43159006-43159025 None:intergenic 20.0%
! AATGAAAATACTTTCTCACT+AGG + chr5.1:43158642-43158661 None:intergenic 25.0%
! ACCTTATTCATCTCATAAAT+GGG + chr5.1:43158888-43158907 None:intergenic 25.0%
! CATTTACAACATAAAATGGA+AGG + chr5.1:43159007-43159026 None:intergenic 25.0%
! GAACCATTTACAACATAAAA+TGG + chr5.1:43159011-43159030 None:intergenic 25.0%
! TTGTTGAAACCAAACAAATA+AGG + chr5.1:43159122-43159141 None:intergenic 25.0%
!! CTTCCATTTTATGTTGTAAA+TGG - chr5.1:43159005-43159024 MS.gene96515:CDS 25.0%
!! TTGTTTGGTTTCAACAATAT+AGG - chr5.1:43159125-43159144 MS.gene96515:CDS 25.0%
!!! AGTGAGAAAGTATTTTCATT+TGG - chr5.1:43158642-43158661 MS.gene96515:CDS 25.0%
AACAAATAAGGTTGCAACAT+AGG + chr5.1:43159110-43159129 None:intergenic 30.0%
AACATAAAATGGAAGGGTTT+GGG + chr5.1:43159000-43159019 None:intergenic 30.0%
ACAAATAAGGTTGCAACATA+GGG + chr5.1:43159109-43159128 None:intergenic 30.0%
CCAACTTGAATTATACAAGA+AGG - chr5.1:43158908-43158927 MS.gene96515:CDS 30.0%
CCTTCTTGTATAATTCAAGT+TGG + chr5.1:43158911-43158930 None:intergenic 30.0%
CTGAAAAAACTCTAATGGAA+AGG + chr5.1:43159084-43159103 None:intergenic 30.0%
GACCTTATTCATCTCATAAA+TGG + chr5.1:43158889-43158908 None:intergenic 30.0%
TCCCATTTATGAGATGAATA+AGG - chr5.1:43158884-43158903 MS.gene96515:CDS 30.0%
TCTATGATCGTTTCAACATT+TGG + chr5.1:43158672-43158691 None:intergenic 30.0%
TGAATTATACAAGAAGGCTT+TGG - chr5.1:43158914-43158933 MS.gene96515:CDS 30.0%
TGACATCATGCAATTAATTG+AGG - chr5.1:43158725-43158744 MS.gene96515:CDS 30.0%
TTCAACAATATAGGAGAAGA+AGG - chr5.1:43159134-43159153 MS.gene96515:CDS 30.0%
! AGATAAATCAGGAACAGTTT+TGG - chr5.1:43158853-43158872 MS.gene96515:CDS 30.0%
! ATGTTGCAACCTTATTTGTT+TGG - chr5.1:43159110-43159129 MS.gene96515:CDS 30.0%
! ATTGCATGATGTCATCATTT+TGG + chr5.1:43158719-43158738 None:intergenic 30.0%
! TTGCATGATGTCATCATTTT+GGG + chr5.1:43158718-43158737 None:intergenic 30.0%
AACAATATAGGAGAAGAAGG+TGG - chr5.1:43159137-43159156 MS.gene96515:CDS 35.0%
AGCAATATATGCACCACAAA+GGG + chr5.1:43158604-43158623 None:intergenic 35.0%
CAACATAAAATGGAAGGGTT+TGG + chr5.1:43159001-43159020 None:intergenic 35.0%
! ATTATACAAGAAGGCTTTGG+AGG - chr5.1:43158917-43158936 MS.gene96515:CDS 35.0%
!! GGGTTCTGAAAAAACTCTAA+TGG + chr5.1:43159089-43159108 None:intergenic 35.0%
!! TAAATCAGGAACAGTTTTGG+TGG - chr5.1:43158856-43158875 MS.gene96515:CDS 35.0%
GAGCAATATATGCACCACAA+AGG + chr5.1:43158605-43158624 None:intergenic 40.0%
GAGCTCAATGGTATATTGAC+TGG - chr5.1:43158771-43158790 MS.gene96515:CDS 40.0%
GCTGAATCTTGTTGAGGATT+TGG + chr5.1:43159062-43159081 None:intergenic 40.0%
TCAAGCGGAAAGAAAACACA+AGG - chr5.1:43158474-43158493 MS.gene96515:CDS 40.0%
! ATGATGTCATCATTTTGGGC+TGG + chr5.1:43158714-43158733 None:intergenic 40.0%
ATAGGAGAAGAAGGTGGACA+TGG - chr5.1:43159143-43159162 MS.gene96515:CDS 45.0%
ATGCTCAAGAGGAATGCTAG+AGG + chr5.1:43159036-43159055 None:intergenic 45.0%
CCAGGTGCGAAAGATAAATC+AGG - chr5.1:43158842-43158861 MS.gene96515:CDS 45.0%
CCTGATTTATCTTTCGCACC+TGG + chr5.1:43158845-43158864 None:intergenic 45.0%
CTTGTTGCACAACATGCTGA+TGG - chr5.1:43158951-43158970 MS.gene96515:CDS 45.0%
CTTTCTTGAAGAGCCCACTA+CGG + chr5.1:43158566-43158585 None:intergenic 45.0%
GCTGATGGAGTTGAAATGCA+GGG - chr5.1:43158966-43158985 MS.gene96515:CDS 45.0%
GGAAAGGCTGAATCTTGTTG+AGG + chr5.1:43159068-43159087 None:intergenic 45.0%
TGCTGATGGAGTTGAAATGC+AGG - chr5.1:43158965-43158984 MS.gene96515:CDS 45.0%
!! CCTGGATTAGCTCATTCTCA+CGG + chr5.1:43158827-43158846 None:intergenic 45.0%
AGTGAGCTTTGCACCCTTTG+TGG - chr5.1:43158588-43158607 MS.gene96515:CDS 50.0%
CCGTGAGAATGAGCTAATCC+AGG - chr5.1:43158824-43158843 MS.gene96515:CDS 50.0%
GGATTTGGCTGATGCTCAAG+AGG + chr5.1:43159047-43159066 None:intergenic 50.0%
TGAGGATTACCGTAGAGCCA+AGG - chr5.1:43158743-43158762 MS.gene96515:CDS 50.0%
AAGGTGGACATGGTCCCCAT+GGG - chr5.1:43159153-43159172 MS.gene96515:CDS 55.0%
!! ACTTTCTCGAAGCGCCGTAG+TGG - chr5.1:43158549-43158568 MS.gene96515:CDS 55.0%
!! CTTTCTCGAAGCGCCGTAGT+GGG - chr5.1:43158550-43158569 MS.gene96515:CDS 55.0%
ACCATTGAGCTCGCGCACCT+TGG + chr5.1:43158763-43158782 None:intergenic 60.0%
GAAGGTGGACATGGTCCCCA+TGG - chr5.1:43159152-43159171 MS.gene96515:CDS 60.0%
GCCAAGGTGCGCGAGCTCAA+TGG - chr5.1:43158759-43158778 MS.gene96515:CDS 65.0%
!! GCTCGCGCACCTTGGCTCTA+CGG + chr5.1:43158755-43158774 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 43158471 43159184 43158471 ID=MS.gene96515
chr5.1 mRNA 43158471 43159184 43158471 ID=MS.gene96515.t1;Parent=MS.gene96515
chr5.1 exon 43158471 43159184 43158471 ID=MS.gene96515.t1.exon1;Parent=MS.gene96515.t1
chr5.1 CDS 43158471 43159184 43158471 ID=cds.MS.gene96515.t1;Parent=MS.gene96515.t1
Gene Sequence

>MS.gene96515

ATGTCAAGCGGAAAGAAAACACAAGGTCGTAAAAAGATTGAGATGAAAAAGATGAGCAATGAAAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCTAGTGAGCTTTGCACCCTTTGTGGTGCATATATTGCTCTAATTATATTCTCACCTAGTGAGAAAGTATTTTCATTTGGTCATCCAAATGTTGAAACGATCATAGATCGTTATCTCTCTCAAGTTCCAGCCCAAAATGATGACATCATGCAATTAATTGAGGATTACCGTAGAGCCAAGGTGCGCGAGCTCAATGGTATATTGACTGGTATGAAAGATGCAATCTGCATCGATAAGAACCGTGAGAATGAGCTAATCCAGGTGCGAAAGATAAATCAGGAACAGTTTTGGTGGACTCGTCCCATTTATGAGATGAATAAGGTCCAACTTGAATTATACAAGAAGGCTTTGGAGGATCTTCTGAAACTTGTTGCACAACATGCTGATGGAGTTGAAATGCAGGGTACTTCTACCCAAACCCTTCCATTTTATGTTGTAAATGGTTCATCCTCTAGCATTCCTCTTGAGCATCAGCCAAATCCTCAACAAGATTCAGCCTTTCCATTAGAGTTTTTTCAGAACCCTATGTTGCAACCTTATTTGTTTGGTTTCAACAATATAGGAGAAGAAGGTGGACATGGTCCCCATGGGTTCTTTTGA
Protein sequence

>MS.gene96515.t1

MSSGKKTQGRKKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGAYIALIIFSPSEKVFSFGHPNVETIIDRYLSQVPAQNDDIMQLIEDYRRAKVRELNGILTGMKDAICIDKNRENELIQVRKINQEQFWWTRPIYEMNKVQLELYKKALEDLLKLVAQHADGVEMQGTSTQTLPFYVVNGSSSSIPLEHQPNPQQDSAFPLEFFQNPMLQPYLFGFNNIGEEGGHGPHGFF