Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96533.t1 | XP_024633451.1 | 94.5 | 182 | 10 | 0 | 45 | 226 | 1 | 182 | 2.70E-87 | 332 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96533.t1 | A0A2Z6PCD1 | 63.2 | 231 | 62 | 2 | 13 | 224 | 99 | 325 | 1.4e-69 | 272.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058580 | MS.gene96533 | 0.801871 | 7.34E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96533.t1 | MTR_3g055517 | 81.043 | 211 | 19 | 2 | 97 | 289 | 1 | 208 | 2.93e-117 | 335 |
| MS.gene96533.t1 | MTR_7g012300 | 74.380 | 121 | 16 | 3 | 179 | 289 | 35 | 150 | 5.35e-48 | 157 |
| MS.gene96533.t1 | MTR_7g012300 | 57.692 | 78 | 25 | 1 | 70 | 139 | 1 | 78 | 7.72e-19 | 81.6 |
| MS.gene96533.t1 | MTR_5g061300 | 58.219 | 146 | 8 | 2 | 13 | 139 | 165 | 276 | 3.98e-44 | 153 |
| MS.gene96533.t1 | MTR_5g061660 | 74.444 | 90 | 5 | 1 | 218 | 289 | 75 | 164 | 9.35e-32 | 116 |
| MS.gene96533.t1 | MTR_7g056577 | 77.778 | 81 | 9 | 1 | 218 | 289 | 51 | 131 | 1.07e-30 | 112 |
| MS.gene96533.t1 | MTR_2g461540 | 73.333 | 90 | 6 | 1 | 218 | 289 | 7 | 96 | 1.30e-29 | 108 |
| MS.gene96533.t1 | MTR_3g027320 | 90.323 | 62 | 6 | 0 | 228 | 289 | 2 | 63 | 8.91e-27 | 99.8 |
| MS.gene96533.t1 | MTR_2g043940 | 75.325 | 77 | 8 | 2 | 219 | 289 | 307 | 378 | 7.12e-25 | 102 |
| MS.gene96533.t1 | MTR_6g043310 | 32.026 | 153 | 89 | 4 | 70 | 214 | 1 | 146 | 1.49e-19 | 83.6 |
| MS.gene96533.t1 | MTR_0039s0180 | 46.610 | 118 | 40 | 4 | 185 | 289 | 15 | 122 | 6.93e-18 | 78.2 |
| MS.gene96533.t1 | MTR_6g088780 | 30.075 | 133 | 77 | 3 | 104 | 229 | 15 | 138 | 1.56e-14 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 57 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCTCAACCTTTCGCTTTA+AGG | 0.082262 | 5.1:+42860603 | None:intergenic |
| GTCAAGAGGTATCTACTTTA+AGG | 0.200895 | 5.1:-42860558 | MS.gene96533:CDS |
| TGAGCTATTGGCACCTTTGC+AGG | 0.277094 | 5.1:+42861317 | None:intergenic |
| ATGCAATCCTCAATTAAATA+TGG | 0.295737 | 5.1:-42860476 | MS.gene96533:CDS |
| CCCGGCAGGTTACGTTGTTA+TGG | 0.300543 | 5.1:-42860646 | MS.gene96533:CDS |
| CACGAGTCAGAGAGAAGCTT+TGG | 0.306744 | 5.1:+42861084 | None:intergenic |
| ATTTGTGCTCTACTATCCTT+TGG | 0.307819 | 5.1:+42860403 | None:intergenic |
| TTTGTGCTCTACTATCCTTT+GGG | 0.348428 | 5.1:+42860404 | None:intergenic |
| TTTCAACCATTTCTTGAAGT+TGG | 0.352234 | 5.1:+42860719 | None:intergenic |
| TGAATTTGAAGTGGACGATA+TGG | 0.357182 | 5.1:-42859418 | MS.gene96533:CDS |
| TTCAACCATTTCTTGAAGTT+GGG | 0.360276 | 5.1:+42860720 | None:intergenic |
| TGATGAATTACAAGATAAAC+TGG | 0.360373 | 5.1:-42859394 | MS.gene96533:CDS |
| AGGACGATGTTTAAGTCTTT+CGG | 0.371163 | 5.1:+42861337 | None:intergenic |
| CTAGTCCCAACTTCAAGAAA+TGG | 0.372385 | 5.1:-42860725 | MS.gene96533:intron |
| AAGCAATTGGATGAGGAAAC+TGG | 0.374588 | 5.1:-42860859 | MS.gene96533:CDS |
| TTAAGTCTTTCGGTCATGTT+AGG | 0.387532 | 5.1:+42861347 | None:intergenic |
| CCGGCAGGTTACGTTGTTAT+GGG | 0.401832 | 5.1:-42860645 | MS.gene96533:CDS |
| ACGAGTCAGAGAGAAGCTTT+GGG | 0.424327 | 5.1:+42861085 | None:intergenic |
| AGGGAGTAGAGGAAAGCAAT+TGG | 0.431530 | 5.1:-42860872 | MS.gene96533:CDS |
| TTGATTCGTGCAGCGTGAAA+AGG | 0.452448 | 5.1:-42860941 | MS.gene96533:intron |
| ATTGACTCCATATTTAATTG+AGG | 0.470425 | 5.1:+42860469 | None:intergenic |
| CATCTCCATGAGATAATCCT+AGG | 0.496903 | 5.1:+42860437 | None:intergenic |
| CAAGAAATGGTTGAAAAGAA+AGG | 0.498068 | 5.1:-42860712 | MS.gene96533:CDS |
| ACTGAAGTGGCTGCATCGAA+TGG | 0.505893 | 5.1:-42861111 | MS.gene96533:CDS |
| TATCAATGAAGATGTTGTAC+AGG | 0.507268 | 5.1:-42859577 | MS.gene96533:CDS |
| CCCATAACAACGTAACCTGC+CGG | 0.511889 | 5.1:+42860645 | None:intergenic |
| CTGAAGTGGCTGCATCGAAT+GGG | 0.523338 | 5.1:-42861110 | MS.gene96533:CDS |
| GAGTCAATAGAACATTTCCT+AGG | 0.524729 | 5.1:-42860454 | MS.gene96533:CDS |
| TAGAGGAAAGCAATTGGATG+AGG | 0.527584 | 5.1:-42860866 | MS.gene96533:CDS |
| TTGTGCTCTACTATCCTTTG+GGG | 0.538222 | 5.1:+42860405 | None:intergenic |
| TCAATTCATACTCCATGTCA+TGG | 0.549340 | 5.1:-42860367 | MS.gene96533:CDS |
| TAAAACTTCCTTAAAGCGAA+AGG | 0.552255 | 5.1:-42860611 | MS.gene96533:CDS |
| CCATAACAACGTAACCTGCC+GGG | 0.555194 | 5.1:+42860646 | None:intergenic |
| ATGGTTACCTTTCCATGACA+TGG | 0.558473 | 5.1:+42860355 | None:intergenic |
| TGGGAAAGGAGCGTCCCGGC+AGG | 0.564163 | 5.1:-42860660 | MS.gene96533:CDS |
| CATTTCCTAGGATTATCTCA+TGG | 0.569174 | 5.1:-42860442 | MS.gene96533:CDS |
| CTTAAGTGATGAATTTCAAG+AGG | 0.569182 | 5.1:-42859481 | MS.gene96533:CDS |
| AAAATAGAGGTCAACTGAAG+TGG | 0.569233 | 5.1:-42861124 | MS.gene96533:CDS |
| CGTAGATGATGAATTTCTTG+AGG | 0.569451 | 5.1:-42859523 | MS.gene96533:CDS |
| TCTTGAGGACGAATTTCTTG+AGG | 0.570664 | 5.1:-42859508 | MS.gene96533:CDS |
| GAATTTGAAGTGGACGATAT+GGG | 0.574360 | 5.1:-42859417 | MS.gene96533:CDS |
| GAAACTCGAAAAGGGAGTAG+AGG | 0.574679 | 5.1:-42860883 | MS.gene96533:CDS |
| CGTAGATGATGAATTTCAAG+AGG | 0.587270 | 5.1:-42859454 | MS.gene96533:CDS |
| AGGATTGCATTGTTGTATGA+CGG | 0.596761 | 5.1:+42860489 | None:intergenic |
| ACTTAAACATCGTCCTGCAA+AGG | 0.599908 | 5.1:-42861330 | MS.gene96533:intron |
| TCATACTCCATGTCATGGAA+AGG | 0.600438 | 5.1:-42860362 | MS.gene96533:intron |
| GAAACAAGCACATAGTCAAG+AGG | 0.625977 | 5.1:-42860572 | MS.gene96533:CDS |
| CATAGATGAGGAATTTCAAG+AGG | 0.630357 | 5.1:-42859550 | MS.gene96533:CDS |
| TGGAGTATGAATTGAAGCAG+AGG | 0.631621 | 5.1:+42860375 | None:intergenic |
| GTTATGGGAAAGGAGCGTCC+CGG | 0.645768 | 5.1:-42860664 | MS.gene96533:CDS |
| CATCGGTGATGAATTTGAAG+TGG | 0.646556 | 5.1:-42859427 | MS.gene96533:CDS |
| AATGTAAGAAGTGTGAAAGC+TGG | 0.648486 | 5.1:-42861380 | MS.gene96533:CDS |
| AGATGCTAACAGTTCCCCAA+AGG | 0.661509 | 5.1:-42860419 | MS.gene96533:CDS |
| GAATTTCAAGAGGATGACAT+CGG | 0.674893 | 5.1:-42859444 | MS.gene96533:CDS |
| CGAGTCAGAGAGAAGCTTTG+GGG | 0.679098 | 5.1:+42861086 | None:intergenic |
| TGTACAGGATGACATAGATG+AGG | 0.688021 | 5.1:-42859562 | MS.gene96533:CDS |
| GTAAGAAGTGTGAAAGCTGG+TGG | 0.693896 | 5.1:-42861377 | MS.gene96533:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCAATAATATTTCTATATA+TGG | + | chr5.1:42860442-42860461 | None:intergenic | 10.0% |
| !! | AATATTAATCTTACCTGTAT+AGG | + | chr5.1:42859518-42859537 | None:intergenic | 20.0% |
| !! | TAATATATGCAAAAAGTTGT+TGG | - | chr5.1:42860504-42860523 | MS.gene96533:CDS | 20.0% |
| !!! | AATTTTGTTTATGCAATTTG+TGG | - | chr5.1:42860895-42860914 | MS.gene96533:CDS | 20.0% |
| ! | AAAAAACATTTCTGATTGAG+TGG | + | chr5.1:42859872-42859891 | None:intergenic | 25.0% |
| ! | AAAAACATTTCTGATTGAGT+GGG | + | chr5.1:42859871-42859890 | None:intergenic | 25.0% |
| ! | ATGCAATCCTCAATTAAATA+TGG | - | chr5.1:42860299-42860318 | MS.gene96533:intron | 25.0% |
| ! | TAAAACAAGTTTCCTAATTG+CGG | - | chr5.1:42861042-42861061 | MS.gene96533:intron | 25.0% |
| ! | TGATGAATTACAAGATAAAC+TGG | - | chr5.1:42861381-42861400 | MS.gene96533:CDS | 25.0% |
| ! | TGATTATGACATACATAGAA+AGG | + | chr5.1:42859568-42859587 | None:intergenic | 25.0% |
| ! | TGTAATGATAGAATAAGGAA+GGG | - | chr5.1:42861012-42861031 | MS.gene96533:intron | 25.0% |
| ! | TTGTAATGATAGAATAAGGA+AGG | - | chr5.1:42861011-42861030 | MS.gene96533:intron | 25.0% |
| ! | TTGTGTTTACTTAATATTGC+TGG | - | chr5.1:42859977-42859996 | MS.gene96533:intron | 25.0% |
| !! | ATTGACTCCATATTTAATTG+AGG | + | chr5.1:42860309-42860328 | None:intergenic | 25.0% |
| !!! | ATGTTTTTTGAAACTCGAAA+AGG | - | chr5.1:42859883-42859902 | MS.gene96533:intron | 25.0% |
| !!! | CTATGTTTTACTTGTTGTTT+TGG | - | chr5.1:42861074-42861093 | MS.gene96533:intron | 25.0% |
| !!! | TGTTTTTTGAAACTCGAAAA+GGG | - | chr5.1:42859884-42859903 | MS.gene96533:intron | 25.0% |
| !!! | TTTTGGTTTTTATTTGTGCA+AGG | - | chr5.1:42861091-42861110 | MS.gene96533:CDS | 25.0% |
| ACACAATCAAAATCCAACTT+TGG | + | chr5.1:42860857-42860876 | None:intergenic | 30.0% | |
| ACATCAACCATAGATATTGT+TGG | + | chr5.1:42861153-42861172 | None:intergenic | 30.0% | |
| CAAGAAATGGTTGAAAAGAA+AGG | - | chr5.1:42860063-42860082 | MS.gene96533:intron | 30.0% | |
| CTTAAGTGATGAATTTCAAG+AGG | - | chr5.1:42861294-42861313 | MS.gene96533:intron | 30.0% | |
| CTTTGAACCAACAATATCTA+TGG | - | chr5.1:42861143-42861162 | MS.gene96533:CDS | 30.0% | |
| GAAAGTAACGCTAAAAATAG+AGG | - | chr5.1:42859638-42859657 | MS.gene96533:intron | 30.0% | |
| GAACTTATGATTATGTCGTT+TGG | - | chr5.1:42860809-42860828 | MS.gene96533:intron | 30.0% | |
| GAGCTTGTAATGATAGAATA+AGG | - | chr5.1:42861007-42861026 | MS.gene96533:intron | 30.0% | |
| TAAAACTTCCTTAAAGCGAA+AGG | - | chr5.1:42860164-42860183 | MS.gene96533:intron | 30.0% | |
| TATCAATGAAGATGTTGTAC+AGG | - | chr5.1:42861198-42861217 | MS.gene96533:intron | 30.0% | |
| TTCAACCATTTCTTGAAGTT+GGG | + | chr5.1:42860058-42860077 | None:intergenic | 30.0% | |
| TTGTTAGTAATGACATCACT+TGG | - | chr5.1:42860725-42860744 | MS.gene96533:intron | 30.0% | |
| TTTCAACCATTTCTTGAAGT+TGG | + | chr5.1:42860059-42860078 | None:intergenic | 30.0% | |
| ! | TAAAGTATTCCTTGGATGAT+TGG | - | chr5.1:42859740-42859759 | MS.gene96533:intron | 30.0% |
| !! | AATTGTTAACTTGCGTATGT+TGG | - | chr5.1:42860767-42860786 | MS.gene96533:intron | 30.0% |
| !! | ATTGTTAACTTGCGTATGTT+GGG | - | chr5.1:42860768-42860787 | MS.gene96533:intron | 30.0% |
| !! | CATAGATATTGTTGGTTCAA+AGG | + | chr5.1:42861145-42861164 | None:intergenic | 30.0% |
| !!! | GAAGCTTTTAAAGCTGTTAT+GGG | - | chr5.1:42860096-42860115 | MS.gene96533:intron | 30.0% |
| !!! | TGAAGCTTTTAAAGCTGTTA+TGG | - | chr5.1:42860095-42860114 | MS.gene96533:intron | 30.0% |
| !!! | TTTTAAAGCTGTTATGGGAA+AGG | - | chr5.1:42860101-42860120 | MS.gene96533:intron | 30.0% |
| AAAATAGAGGTCAACTGAAG+TGG | - | chr5.1:42859651-42859670 | MS.gene96533:intron | 35.0% | |
| AACTGTTAAGTTACGTGTGT+AGG | - | chr5.1:42860562-42860581 | MS.gene96533:CDS | 35.0% | |
| AATCTCAACCTTTCGCTTTA+AGG | + | chr5.1:42860175-42860194 | None:intergenic | 35.0% | |
| AATGACATCACTTGGAATGT+AGG | - | chr5.1:42860733-42860752 | MS.gene96533:intron | 35.0% | |
| ACACGTAACTTAACAGTTTC+AGG | + | chr5.1:42860560-42860579 | None:intergenic | 35.0% | |
| ACTGTTAAGTTACGTGTGTA+GGG | - | chr5.1:42860563-42860582 | MS.gene96533:CDS | 35.0% | |
| AGGACGATGTTTAAGTCTTT+CGG | + | chr5.1:42859441-42859460 | None:intergenic | 35.0% | |
| AGGATTGCATTGTTGTATGA+CGG | + | chr5.1:42860289-42860308 | None:intergenic | 35.0% | |
| ATTCCGTAAAACTTCAATGC+AGG | - | chr5.1:42859607-42859626 | MS.gene96533:intron | 35.0% | |
| ATTTGTGCTCTACTATCCTT+TGG | + | chr5.1:42860375-42860394 | None:intergenic | 35.0% | |
| CATAGATGAGGAATTTCAAG+AGG | - | chr5.1:42861225-42861244 | MS.gene96533:intron | 35.0% | |
| CATTTCCTAGGATTATCTCA+TGG | - | chr5.1:42860333-42860352 | MS.gene96533:intron | 35.0% | |
| CGTAGATGATGAATTTCAAG+AGG | - | chr5.1:42861321-42861340 | MS.gene96533:intron | 35.0% | |
| CGTAGATGATGAATTTCTTG+AGG | - | chr5.1:42861252-42861271 | MS.gene96533:intron | 35.0% | |
| GAATTTCAAGAGGATGACAT+CGG | - | chr5.1:42861331-42861350 | MS.gene96533:CDS | 35.0% | |
| GAGTCAATAGAACATTTCCT+AGG | - | chr5.1:42860321-42860340 | MS.gene96533:intron | 35.0% | |
| TAAAACTTCAATGCAGGCAT+TGG | - | chr5.1:42859613-42859632 | MS.gene96533:intron | 35.0% | |
| TCAAAGAAACCAATCATCCA+AGG | + | chr5.1:42859752-42859771 | None:intergenic | 35.0% | |
| TCAATTCATACTCCATGTCA+TGG | - | chr5.1:42860408-42860427 | MS.gene96533:CDS | 35.0% | |
| TTAAGTCTTTCGGTCATGTT+AGG | + | chr5.1:42859431-42859450 | None:intergenic | 35.0% | |
| TTTGTGCTCTACTATCCTTT+GGG | + | chr5.1:42860374-42860393 | None:intergenic | 35.0% | |
| ! | AATGTAAGAAGTGTGAAAGC+TGG | - | chr5.1:42859395-42859414 | MS.gene96533:CDS | 35.0% |
| ! | ATGCCTGCATTGAAGTTTTA+CGG | + | chr5.1:42859613-42859632 | None:intergenic | 35.0% |
| ! | ATTGTTTAAGATGTGTGTGC+AGG | - | chr5.1:42860631-42860650 | MS.gene96533:CDS | 35.0% |
| ! | CGCTCAATTAAAGTATTCCT+TGG | - | chr5.1:42859732-42859751 | MS.gene96533:intron | 35.0% |
| ! | GAATTTGAAGTGGACGATAT+GGG | - | chr5.1:42861358-42861377 | MS.gene96533:CDS | 35.0% |
| ! | TGAATTTGAAGTGGACGATA+TGG | - | chr5.1:42861357-42861376 | MS.gene96533:CDS | 35.0% |
| ! | TTGTTTAAGATGTGTGTGCA+GGG | - | chr5.1:42860632-42860651 | MS.gene96533:CDS | 35.0% |
| !! | GCTTTGTGAATTCTAGAGTA+AGG | - | chr5.1:42859490-42859509 | MS.gene96533:CDS | 35.0% |
| !! | GTCAAGAGGTATCTACTTTA+AGG | - | chr5.1:42860217-42860236 | MS.gene96533:intron | 35.0% |
| !!! | ACGAGAGGCATTTTAATTCA+TGG | - | chr5.1:42859800-42859819 | MS.gene96533:intron | 35.0% |
| !!! | CGAGAGGCATTTTAATTCAT+GGG | - | chr5.1:42859801-42859820 | MS.gene96533:intron | 35.0% |
| AAGCAATTGGATGAGGAAAC+TGG | - | chr5.1:42859916-42859935 | MS.gene96533:intron | 40.0% | |
| ACTTAAACATCGTCCTGCAA+AGG | - | chr5.1:42859445-42859464 | MS.gene96533:CDS | 40.0% | |
| AGCTCCCTAAAATGAGCTAT+TGG | + | chr5.1:42859473-42859492 | None:intergenic | 40.0% | |
| AGTGACATCACTTGGAATGT+AGG | - | chr5.1:42860528-42860547 | MS.gene96533:CDS | 40.0% | |
| ATGGTTACCTTTCCATGACA+TGG | + | chr5.1:42860423-42860442 | None:intergenic | 40.0% | |
| CATCGGTGATGAATTTGAAG+TGG | - | chr5.1:42861348-42861367 | MS.gene96533:CDS | 40.0% | |
| CATCTCCATGAGATAATCCT+AGG | + | chr5.1:42860341-42860360 | None:intergenic | 40.0% | |
| CTAGTCCCAACTTCAAGAAA+TGG | - | chr5.1:42860050-42860069 | MS.gene96533:intron | 40.0% | |
| GAAACAAGCACATAGTCAAG+AGG | - | chr5.1:42860203-42860222 | MS.gene96533:intron | 40.0% | |
| TAGAGGAAAGCAATTGGATG+AGG | - | chr5.1:42859909-42859928 | MS.gene96533:intron | 40.0% | |
| TAGTCAACATAGCCGCAATT+AGG | + | chr5.1:42861057-42861076 | None:intergenic | 40.0% | |
| TCATACTCCATGTCATGGAA+AGG | - | chr5.1:42860413-42860432 | MS.gene96533:CDS | 40.0% | |
| TCTTGAGGACGAATTTCTTG+AGG | - | chr5.1:42861267-42861286 | MS.gene96533:intron | 40.0% | |
| TGGAGTATGAATTGAAGCAG+AGG | + | chr5.1:42860403-42860422 | None:intergenic | 40.0% | |
| TGTACAGGATGACATAGATG+AGG | - | chr5.1:42861213-42861232 | MS.gene96533:intron | 40.0% | |
| TTAAGATGCGTGTCCAAAGT+TGG | - | chr5.1:42860841-42860860 | MS.gene96533:intron | 40.0% | |
| TTGTGCTCTACTATCCTTTG+GGG | + | chr5.1:42860373-42860392 | None:intergenic | 40.0% | |
| ! | AGGTGCCAATAGCTCATTTT+AGG | - | chr5.1:42859465-42859484 | MS.gene96533:CDS | 40.0% |
| ! | GGTGCCAATAGCTCATTTTA+GGG | - | chr5.1:42859466-42859485 | MS.gene96533:CDS | 40.0% |
| ! | TCATGTCTAGTTTCTACGAG+AGG | - | chr5.1:42859785-42859804 | MS.gene96533:intron | 40.0% |
| !! | TTGTTGGTAGTGACATCACT+TGG | - | chr5.1:42860520-42860539 | MS.gene96533:CDS | 40.0% |
| ACGAGTCAGAGAGAAGCTTT+GGG | + | chr5.1:42859693-42859712 | None:intergenic | 45.0% | |
| AGATGCTAACAGTTCCCCAA+AGG | - | chr5.1:42860356-42860375 | MS.gene96533:intron | 45.0% | |
| AGGGAGTAGAGGAAAGCAAT+TGG | - | chr5.1:42859903-42859922 | MS.gene96533:intron | 45.0% | |
| CTAGAGTAAGGAGCCTATAC+AGG | - | chr5.1:42859502-42859521 | MS.gene96533:CDS | 45.0% | |
| GAAACTCGAAAAGGGAGTAG+AGG | - | chr5.1:42859892-42859911 | MS.gene96533:intron | 45.0% | |
| TTAAGATGTGTGTGCAGGGT+CGG | - | chr5.1:42860636-42860655 | MS.gene96533:CDS | 45.0% | |
| ! | CTCTCTGACTCGTGAAAAAC+TGG | - | chr5.1:42859700-42859719 | MS.gene96533:intron | 45.0% |
| ! | GTAAGAAGTGTGAAAGCTGG+TGG | - | chr5.1:42859398-42859417 | MS.gene96533:CDS | 45.0% |
| ! | TTGATTCGTGCAGCGTGAAA+AGG | - | chr5.1:42859834-42859853 | MS.gene96533:intron | 45.0% |
| ACTGAAGTGGCTGCATCGAA+TGG | - | chr5.1:42859664-42859683 | MS.gene96533:intron | 50.0% | |
| CACGAGTCAGAGAGAAGCTT+TGG | + | chr5.1:42859694-42859713 | None:intergenic | 50.0% | |
| CCATAACAACGTAACCTGCC+GGG | + | chr5.1:42860132-42860151 | None:intergenic | 50.0% | |
| CCCATAACAACGTAACCTGC+CGG | + | chr5.1:42860133-42860152 | None:intergenic | 50.0% | |
| CCGGCAGGTTACGTTGTTAT+GGG | - | chr5.1:42860130-42860149 | MS.gene96533:intron | 50.0% | |
| CGAGTCAGAGAGAAGCTTTG+GGG | + | chr5.1:42859692-42859711 | None:intergenic | 50.0% | |
| CTGAAGTGGCTGCATCGAAT+GGG | - | chr5.1:42859665-42859684 | MS.gene96533:intron | 50.0% | |
| TGAGCTATTGGCACCTTTGC+AGG | + | chr5.1:42859461-42859480 | None:intergenic | 50.0% | |
| CCCGGCAGGTTACGTTGTTA+TGG | - | chr5.1:42860129-42860148 | MS.gene96533:intron | 55.0% | |
| !! | GTTATGGGAAAGGAGCGTCC+CGG | - | chr5.1:42860111-42860130 | MS.gene96533:intron | 55.0% |
| !! | TGGGAAAGGAGCGTCCCGGC+AGG | - | chr5.1:42860115-42860134 | MS.gene96533:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 42859389 | 42861408 | 42859389 | ID=MS.gene96533 |
| chr5.1 | mRNA | 42859389 | 42861408 | 42859389 | ID=MS.gene96533.t1;Parent=MS.gene96533 |
| chr5.1 | exon | 42861331 | 42861408 | 42861331 | ID=MS.gene96533.t1.exon1;Parent=MS.gene96533.t1 |
| chr5.1 | CDS | 42861331 | 42861408 | 42861331 | ID=cds.MS.gene96533.t1;Parent=MS.gene96533.t1 |
| chr5.1 | exon | 42861076 | 42861168 | 42861076 | ID=MS.gene96533.t1.exon2;Parent=MS.gene96533.t1 |
| chr5.1 | CDS | 42861076 | 42861168 | 42861076 | ID=cds.MS.gene96533.t1;Parent=MS.gene96533.t1 |
| chr5.1 | exon | 42860849 | 42860950 | 42860849 | ID=MS.gene96533.t1.exon3;Parent=MS.gene96533.t1 |
| chr5.1 | CDS | 42860849 | 42860950 | 42860849 | ID=cds.MS.gene96533.t1;Parent=MS.gene96533.t1 |
| chr5.1 | exon | 42860363 | 42860743 | 42860363 | ID=MS.gene96533.t1.exon4;Parent=MS.gene96533.t1 |
| chr5.1 | CDS | 42860363 | 42860743 | 42860363 | ID=cds.MS.gene96533.t1;Parent=MS.gene96533.t1 |
| chr5.1 | exon | 42859389 | 42859604 | 42859389 | ID=MS.gene96533.t1.exon5;Parent=MS.gene96533.t1 |
| chr5.1 | CDS | 42859389 | 42859604 | 42859389 | ID=cds.MS.gene96533.t1;Parent=MS.gene96533.t1 |
| Gene Sequence |
| Protein sequence |
