Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96566.t1 | XP_003622933.1 | 87.9 | 281 | 34 | 0 | 1 | 281 | 1 | 281 | 1.50E-127 | 465.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96566.t1 | Q6ICB0 | 50.7 | 146 | 70 | 2 | 6 | 149 | 7 | 152 | 7.6e-35 | 149.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96566.t1 | G7L195 | 87.9 | 281 | 34 | 0 | 1 | 281 | 1 | 281 | 1.1e-127 | 465.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055864 | MS.gene96566 | 0.81217 | 4.85E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96566.t1 | MTR_7g058510 | 96.797 | 281 | 9 | 0 | 1 | 281 | 1 | 281 | 0.0 | 564 |
| MS.gene96566.t1 | MTR_4g100500 | 33.858 | 127 | 72 | 2 | 8 | 128 | 24 | 144 | 3.95e-14 | 70.1 |
| MS.gene96566.t1 | MTR_5g013040 | 35.433 | 127 | 70 | 2 | 8 | 128 | 25 | 145 | 9.86e-14 | 69.3 |
| MS.gene96566.t1 | MTR_4g113720 | 26.289 | 194 | 122 | 4 | 8 | 195 | 31 | 209 | 6.72e-13 | 66.6 |
| MS.gene96566.t1 | MTR_1g013110 | 30.675 | 163 | 84 | 6 | 8 | 150 | 19 | 172 | 6.79e-13 | 66.6 |
| MS.gene96566.t1 | MTR_4g113720 | 26.289 | 194 | 122 | 4 | 8 | 195 | 31 | 209 | 6.96e-13 | 67.0 |
| MS.gene96566.t1 | MTR_3g106240 | 29.457 | 129 | 75 | 3 | 8 | 128 | 19 | 139 | 4.72e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96566.t1 | AT3G07090 | 63.082 | 279 | 88 | 3 | 1 | 279 | 1 | 264 | 7.48e-129 | 367 |
| MS.gene96566.t1 | AT3G07090 | 63.082 | 279 | 88 | 3 | 1 | 279 | 1 | 264 | 7.48e-129 | 367 |
| MS.gene96566.t1 | AT4G17486 | 32.283 | 127 | 74 | 2 | 8 | 128 | 28 | 148 | 9.45e-12 | 63.5 |
| MS.gene96566.t1 | AT4G17486 | 32.283 | 127 | 74 | 2 | 8 | 128 | 28 | 148 | 1.57e-11 | 62.8 |
| MS.gene96566.t1 | AT5G25170 | 31.783 | 129 | 72 | 3 | 8 | 128 | 20 | 140 | 1.78e-11 | 62.8 |
| MS.gene96566.t1 | AT2G25190 | 32.283 | 127 | 74 | 3 | 8 | 128 | 19 | 139 | 1.83e-11 | 63.2 |
| MS.gene96566.t1 | AT5G47310 | 32.258 | 124 | 72 | 2 | 8 | 125 | 30 | 147 | 3.39e-11 | 62.4 |
Find 57 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACACAGGAATTGTGGTTTA+TGG | 0.212137 | 7.3:-46273538 | MS.gene96566:CDS |
| TATGGCAATGAATACTTCTT+TGG | 0.252041 | 7.3:-46273520 | MS.gene96566:CDS |
| GGACTGTTCATAACTTCATT+AGG | 0.279110 | 7.3:+46273262 | None:intergenic |
| AAACTCATCCACTGAGAAAA+AGG | 0.288944 | 7.3:-46272295 | MS.gene96566:CDS |
| ATTGTTTGCAGGAGGGTTAC+AGG | 0.297422 | 7.3:-46274255 | MS.gene96566:intron |
| CAAAGAGTTTGCTGCAATAA+TGG | 0.302763 | 7.3:-46272121 | MS.gene96566:CDS |
| GTAAGCAAGCTGTAAGTTTC+AGG | 0.303403 | 7.3:+46273364 | None:intergenic |
| TACATTTCAAACACATCCTT+TGG | 0.308893 | 7.3:+46273415 | None:intergenic |
| TTGGTGCATTTGAACTCTTT+TGG | 0.335902 | 7.3:+46272316 | None:intergenic |
| GTCTCTAGATTCTGAATCAT+TGG | 0.350969 | 7.3:+46272426 | None:intergenic |
| GACTGTTCATAACTTCATTA+GGG | 0.364610 | 7.3:+46273263 | None:intergenic |
| TTCCACAAGTACCACAATTC+AGG | 0.398164 | 7.3:-46272383 | MS.gene96566:CDS |
| TTTGCTGCAATAATGGCAAC+TGG | 0.421812 | 7.3:-46272114 | MS.gene96566:CDS |
| TGTGTTTGAAATGTATTTGC+AGG | 0.423912 | 7.3:-46273407 | MS.gene96566:CDS |
| CCACTCAAAGTGGTAGAGTT+AGG | 0.445501 | 7.3:-46273451 | MS.gene96566:CDS |
| GGTGTTGTAAAAGATCCTTT+AGG | 0.452568 | 7.3:-46272177 | MS.gene96566:CDS |
| TTGTTCCTTGCATCACCTAA+AGG | 0.460520 | 7.3:+46272162 | None:intergenic |
| GGGAGCTGAAGAATATAATC+AGG | 0.463108 | 7.3:+46273283 | None:intergenic |
| AAAGCTGTCGAGCAAGTCCT+TGG | 0.493866 | 7.3:+46274206 | None:intergenic |
| ACTTGCTACTAGAAGAGTTA+TGG | 0.494098 | 7.3:-46272064 | MS.gene96566:CDS |
| CCCAACAATGAAGTAGCAAA+AGG | 0.494114 | 7.3:-46272267 | MS.gene96566:CDS |
| ACACCATTTGATGCTGCTGC+TGG | 0.495944 | 7.3:+46272195 | None:intergenic |
| GGAAAACCATCGAAGGCATA+TGG | 0.498523 | 7.3:-46274168 | MS.gene96566:intron |
| GGAATACAACACCTTCCTGC+TGG | 0.503110 | 7.3:-46273493 | MS.gene96566:CDS |
| CTTCAGGCACACAGGAATTG+TGG | 0.517638 | 7.3:-46273545 | MS.gene96566:intron |
| GGCAATGAATACTTCTTTGG+TGG | 0.517963 | 7.3:-46273517 | MS.gene96566:CDS |
| AAACCAGCAGCAGCATCAAA+TGG | 0.520471 | 7.3:-46272198 | MS.gene96566:CDS |
| GAAGTTATGAACAGTCCAAT+GGG | 0.524842 | 7.3:-46273256 | MS.gene96566:CDS |
| CTAGAGACAACATTAAAATC+CGG | 0.526391 | 7.3:-46272411 | MS.gene96566:CDS |
| TTGTTTGCAGGAGGGTTACA+GGG | 0.534976 | 7.3:-46274254 | MS.gene96566:intron |
| CACTCACCATATGCCTTCGA+TGG | 0.540917 | 7.3:+46274162 | None:intergenic |
| AATGTTTATGACTTAAGCCA+AGG | 0.544057 | 7.3:-46274223 | MS.gene96566:CDS |
| TGGTACTTGTGGAACACCGC+CGG | 0.545171 | 7.3:+46272392 | None:intergenic |
| GAAGCAGGACTCACTGTGGA+AGG | 0.554794 | 7.3:+46272360 | None:intergenic |
| CCGTATGGTGTTGATCCAGC+AGG | 0.558159 | 7.3:+46273478 | None:intergenic |
| TGAAGTTATGAACAGTCCAA+TGG | 0.563966 | 7.3:-46273257 | MS.gene96566:CDS |
| ACTGAGGCAAAATTTGAAGC+AGG | 0.564757 | 7.3:+46272345 | None:intergenic |
| GGCCTGAATTGTGGTACTTG+TGG | 0.574049 | 7.3:+46272381 | None:intergenic |
| AATGAATACTTCTTTGGTGG+TGG | 0.574301 | 7.3:-46273514 | MS.gene96566:CDS |
| AGGTGTTACTCATGTTCCAA+AGG | 0.578160 | 7.3:-46273431 | MS.gene96566:CDS |
| CCTGCTGGATCAACACCATA+CGG | 0.580476 | 7.3:-46273478 | MS.gene96566:CDS |
| ACTTTGAGTGGAGTTCCGTA+TGG | 0.581451 | 7.3:+46273463 | None:intergenic |
| CCTAACTCTACCACTTTGAG+TGG | 0.583133 | 7.3:+46273451 | None:intergenic |
| TTTAGGTGATGCAAGGAACA+AGG | 0.587830 | 7.3:-46272160 | MS.gene96566:CDS |
| AAGATCCTTTAGGTGATGCA+AGG | 0.600112 | 7.3:-46272167 | MS.gene96566:CDS |
| TGTTTATACTTCAGGCACAC+AGG | 0.608555 | 7.3:-46273553 | MS.gene96566:intron |
| TCAATTGTACCACATGGCTG+AGG | 0.608636 | 7.3:-46274371 | None:intergenic |
| TTACAGAAAAGAGAACCCAT+TGG | 0.609026 | 7.3:+46273241 | None:intergenic |
| ATACGGAACTCCACTCAAAG+TGG | 0.642098 | 7.3:-46273461 | MS.gene96566:CDS |
| TTGCTGCAATAATGGCAACT+GGG | 0.650479 | 7.3:-46272113 | MS.gene96566:CDS |
| AGAAGAGTTATGGAAAGACA+TGG | 0.658903 | 7.3:-46272054 | MS.gene96566:CDS |
| ATGGTGTTGATCCAGCAGGA+AGG | 0.672257 | 7.3:+46273482 | None:intergenic |
| ACTGTGGAAGGCCTGAATTG+TGG | 0.694621 | 7.3:+46272372 | None:intergenic |
| GAGACAACATTAAAATCCGG+CGG | 0.703759 | 7.3:-46272408 | MS.gene96566:CDS |
| TAAGTTTCAGGCAAGTACCG+CGG | 0.705512 | 7.3:+46273376 | None:intergenic |
| ATTTGAAGCAGGACTCACTG+TGG | 0.706003 | 7.3:+46272356 | None:intergenic |
| ATTTGCAGGAAATCAGTCCG+CGG | 0.754428 | 7.3:-46273393 | MS.gene96566:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTATATTTTGATTATAATTT+CGG | - | chr7.3:46272805-46272824 | MS.gene96566:intron | 10.0% |
| !!! | TATATTTTGATTATAATTTC+GGG | - | chr7.3:46272806-46272825 | MS.gene96566:intron | 10.0% |
| !! | TCTATATTATTAGATGTTAT+TGG | - | chr7.3:46273526-46273545 | MS.gene96566:CDS | 15.0% |
| !!! | AAGGATGTATTTATTTTATA+CGG | + | chr7.3:46273799-46273818 | None:intergenic | 15.0% |
| !!! | ATTGATAATAAATTGATAAG+TGG | - | chr7.3:46272453-46272472 | MS.gene96566:intron | 15.0% |
| !!! | TTTTTATATATCATGATTCA+TGG | - | chr7.3:46272095-46272114 | MS.gene96566:CDS | 15.0% |
| !! | AAATCATGAACATTATACTA+TGG | + | chr7.3:46272273-46272292 | None:intergenic | 20.0% |
| !! | ATATCATTGTTATCAAATAG+TGG | + | chr7.3:46272779-46272798 | None:intergenic | 20.0% |
| !! | GTATAATGTTCATGATTTAA+TGG | - | chr7.3:46272275-46272294 | MS.gene96566:CDS | 20.0% |
| !! | TTAATACTTAAATTGTTTGC+AGG | - | chr7.3:46272121-46272140 | MS.gene96566:CDS | 20.0% |
| !!! | ACAATGTAGAAATACTTTTT+AGG | - | chr7.3:46273336-46273355 | MS.gene96566:CDS | 20.0% |
| !!! | GTTGTTGTATTTTAGAATTA+CGG | - | chr7.3:46272306-46272325 | MS.gene96566:CDS | 20.0% |
| !!! | TGTTTAATTTCTGTCATATA+TGG | - | chr7.3:46272734-46272753 | MS.gene96566:intron | 20.0% |
| !!! | TTGATAACAATGATATTGAA+AGG | - | chr7.3:46272783-46272802 | MS.gene96566:intron | 20.0% |
| ! | CTTGAAAAAGAGTTCATAAT+GGG | - | chr7.3:46273455-46273474 | MS.gene96566:CDS | 25.0% |
| ! | TGCATTCAAACAAATCTTTA+TGG | - | chr7.3:46273282-46273301 | MS.gene96566:CDS | 25.0% |
| ! | TGGAAAATGAGTTTATAAGT+AGG | - | chr7.3:46273673-46273692 | MS.gene96566:intron | 25.0% |
| !! | CAAAGCATTAACATAATACA+CGG | - | chr7.3:46272396-46272415 | MS.gene96566:CDS | 25.0% |
| !! | TTGTACTAAATTGAGTATTG+AGG | - | chr7.3:46272698-46272717 | MS.gene96566:intron | 25.0% |
| !!! | ATCAATGATACTACTAGTTT+TGG | - | chr7.3:46272049-46272068 | MS.gene96566:CDS | 25.0% |
| !!! | ATTTTAGAATTACGGATTAG+AGG | - | chr7.3:46272314-46272333 | MS.gene96566:CDS | 25.0% |
| !!! | CTTGTTCTAAGATTCTTTTT+TGG | - | chr7.3:46273383-46273402 | MS.gene96566:CDS | 25.0% |
| !!! | TGTACTAAATTGAGTATTGA+GGG | - | chr7.3:46272699-46272718 | MS.gene96566:intron | 25.0% |
| !!! | TGTTTGTTTCCTTTTGTTTT+AGG | - | chr7.3:46272246-46272265 | MS.gene96566:CDS | 25.0% |
| !!! | TTTTAGAATTACGGATTAGA+GGG | - | chr7.3:46272315-46272334 | MS.gene96566:CDS | 25.0% |
| AATGTTTATGACTTAAGCCA+AGG | - | chr7.3:46272164-46272183 | MS.gene96566:CDS | 30.0% | |
| AGAATGTAACTATGTGTGTT+GGG | - | chr7.3:46272483-46272502 | MS.gene96566:intron | 30.0% | |
| ATACTTAAATTGTTTGCAGG+AGG | - | chr7.3:46272124-46272143 | MS.gene96566:CDS | 30.0% | |
| ATGTACATTCAAGATACAAG+AGG | + | chr7.3:46272586-46272605 | None:intergenic | 30.0% | |
| CATACATTCTTCCAAAATTC+CGG | - | chr7.3:46273738-46273757 | MS.gene96566:intron | 30.0% | |
| CTAGAGACAACATTAAAATC+CGG | - | chr7.3:46273976-46273995 | MS.gene96566:intron | 30.0% | |
| GACTGTTCATAACTTCATTA+GGG | + | chr7.3:46273127-46273146 | None:intergenic | 30.0% | |
| GAGTTTAATCTTAAATCCGT+TGG | - | chr7.3:46273548-46273567 | MS.gene96566:intron | 30.0% | |
| GCTTGAAAAAGAGTTCATAA+TGG | - | chr7.3:46273454-46273473 | MS.gene96566:CDS | 30.0% | |
| TACATTTCAAACACATCCTT+TGG | + | chr7.3:46272975-46272994 | None:intergenic | 30.0% | |
| TACTATGGACCTAAAACAAA+AGG | + | chr7.3:46272258-46272277 | None:intergenic | 30.0% | |
| TACTTAAATTGTTTGCAGGA+GGG | - | chr7.3:46272125-46272144 | MS.gene96566:CDS | 30.0% | |
| TAGAATGTAACTATGTGTGT+TGG | - | chr7.3:46272482-46272501 | MS.gene96566:intron | 30.0% | |
| TATGGCAATGAATACTTCTT+TGG | - | chr7.3:46272867-46272886 | MS.gene96566:intron | 30.0% | |
| TCTATGTTGTGTTGAATGAA+TGG | - | chr7.3:46272348-46272367 | MS.gene96566:CDS | 30.0% | |
| ! | ACTGTTTAAAGTTCCACATA+TGG | - | chr7.3:46273432-46273451 | MS.gene96566:CDS | 30.0% |
| ! | CAATGAAGTTGCTCAATTTT+TGG | - | chr7.3:46273067-46273086 | MS.gene96566:intron | 30.0% |
| ! | TGTGTTTGAAATGTATTTGC+AGG | - | chr7.3:46272980-46272999 | MS.gene96566:intron | 30.0% |
| AAACTCATCCACTGAGAAAA+AGG | - | chr7.3:46274092-46274111 | MS.gene96566:intron | 35.0% | |
| AACCATGTGCTATCAAATGT+AGG | + | chr7.3:46273654-46273673 | None:intergenic | 35.0% | |
| AATGAATACTTCTTTGGTGG+TGG | - | chr7.3:46272873-46272892 | MS.gene96566:intron | 35.0% | |
| AGAAGAGTTATGGAAAGACA+TGG | - | chr7.3:46274333-46274352 | MS.gene96566:intron | 35.0% | |
| AGAGGAAAGAAACAAACCTA+TGG | + | chr7.3:46272568-46272587 | None:intergenic | 35.0% | |
| GAAGTTATGAACAGTCCAAT+GGG | - | chr7.3:46273131-46273150 | MS.gene96566:intron | 35.0% | |
| GGACTGTTCATAACTTCATT+AGG | + | chr7.3:46273128-46273147 | None:intergenic | 35.0% | |
| GTCTCTAGATTCTGAATCAT+TGG | + | chr7.3:46273964-46273983 | None:intergenic | 35.0% | |
| TGAAGTTATGAACAGTCCAA+TGG | - | chr7.3:46273130-46273149 | MS.gene96566:intron | 35.0% | |
| TTACAGAAAAGAGAACCCAT+TGG | + | chr7.3:46273149-46273168 | None:intergenic | 35.0% | |
| ! | ACTTGCTACTAGAAGAGTTA+TGG | - | chr7.3:46274323-46274342 | MS.gene96566:intron | 35.0% |
| ! | GAAAAAGAGTTCATAATGGG+AGG | - | chr7.3:46273458-46273477 | MS.gene96566:CDS | 35.0% |
| ! | GGGTATTGTGTTTATACTTC+AGG | - | chr7.3:46272826-46272845 | MS.gene96566:intron | 35.0% |
| ! | GGTGTTGTAAAAGATCCTTT+AGG | - | chr7.3:46274210-46274229 | MS.gene96566:CDS | 35.0% |
| ! | TACATTTGATAGCACATGGT+TGG | - | chr7.3:46273653-46273672 | MS.gene96566:intron | 35.0% |
| ! | TGGTGCATTTGAACTCTTTT+GGG | + | chr7.3:46274073-46274092 | None:intergenic | 35.0% |
| ! | TTGGTGCATTTGAACTCTTT+TGG | + | chr7.3:46274074-46274093 | None:intergenic | 35.0% |
| ! | TTTTTCTCAGTGGATGAGTT+TGG | + | chr7.3:46274093-46274112 | None:intergenic | 35.0% |
| !! | CAAAGAGTTTGCTGCAATAA+TGG | - | chr7.3:46274266-46274285 | MS.gene96566:intron | 35.0% |
| !! | CCTTTTGCTACTTCATTGTT+GGG | + | chr7.3:46274123-46274142 | None:intergenic | 35.0% |
| !! | TGATTTGAGTGAAGTGTTGT+AGG | + | chr7.3:46273179-46273198 | None:intergenic | 35.0% |
| !!! | ACTCTTTTTCAAGCCATATG+TGG | + | chr7.3:46273448-46273467 | None:intergenic | 35.0% |
| !!! | GAAGTTGCTCAATTTTTGGT+TGG | - | chr7.3:46273071-46273090 | MS.gene96566:intron | 35.0% |
| AAGATCCTTTAGGTGATGCA+AGG | - | chr7.3:46274220-46274239 | MS.gene96566:CDS | 40.0% | |
| AGATGTCTAGATGTCCGATA+TGG | - | chr7.3:46273605-46273624 | MS.gene96566:intron | 40.0% | |
| AGCAAAGTGATGCAATGCTA+AGG | + | chr7.3:46273818-46273837 | None:intergenic | 40.0% | |
| ATAACCCTGTCTACAAGCAA+TGG | + | chr7.3:46273220-46273239 | None:intergenic | 40.0% | |
| CACACAGGAATTGTGGTTTA+TGG | - | chr7.3:46272849-46272868 | MS.gene96566:intron | 40.0% | |
| CATCTACAATATGACTCGAG+TGG | + | chr7.3:46273590-46273609 | None:intergenic | 40.0% | |
| CCCAACAATGAAGTAGCAAA+AGG | - | chr7.3:46274120-46274139 | MS.gene96566:intron | 40.0% | |
| GAACACACCTTTAATCTGCA+GGG | - | chr7.3:46272523-46272542 | MS.gene96566:intron | 40.0% | |
| GAATGTACATGCCAACATCT+TGG | - | chr7.3:46272596-46272615 | MS.gene96566:intron | 40.0% | |
| GAGACAACATTAAAATCCGG+CGG | - | chr7.3:46273979-46273998 | MS.gene96566:intron | 40.0% | |
| GCACTACAAAAACGACTTGT+AGG | + | chr7.3:46273711-46273730 | None:intergenic | 40.0% | |
| GGCAATGAATACTTCTTTGG+TGG | - | chr7.3:46272870-46272889 | MS.gene96566:intron | 40.0% | |
| GGGAGCTGAAGAATATAATC+AGG | + | chr7.3:46273107-46273126 | None:intergenic | 40.0% | |
| GTAAGCAAGCTGTAAGTTTC+AGG | + | chr7.3:46273026-46273045 | None:intergenic | 40.0% | |
| TGGCAGATCATAGAAGATAG+TGG | - | chr7.3:46272641-46272660 | MS.gene96566:intron | 40.0% | |
| TGTTTATACTTCAGGCACAC+AGG | - | chr7.3:46272834-46272853 | MS.gene96566:intron | 40.0% | |
| TTCCACAAGTACCACAATTC+AGG | - | chr7.3:46274004-46274023 | MS.gene96566:intron | 40.0% | |
| TTCTACAAAACCGACAAGCA+TGG | + | chr7.3:46273493-46273512 | None:intergenic | 40.0% | |
| TTGCTGCAATAATGGCAACT+GGG | - | chr7.3:46274274-46274293 | MS.gene96566:intron | 40.0% | |
| TTGTTCCTTGCATCACCTAA+AGG | + | chr7.3:46274228-46274247 | None:intergenic | 40.0% | |
| TTTAGGTGATGCAAGGAACA+AGG | - | chr7.3:46274227-46274246 | MS.gene96566:CDS | 40.0% | |
| TTTGCTGCAATAATGGCAAC+TGG | - | chr7.3:46274273-46274292 | MS.gene96566:intron | 40.0% | |
| ! | ACTGAGGCAAAATTTGAAGC+AGG | + | chr7.3:46274045-46274064 | None:intergenic | 40.0% |
| ! | CTGCAGATTAAAGGTGTGTT+CGG | + | chr7.3:46272524-46272543 | None:intergenic | 40.0% |
| ! | GTCCTACATTTGATAGCACA+TGG | - | chr7.3:46273649-46273668 | MS.gene96566:intron | 40.0% |
| ! | GTGCTAGATAGCTTTACCAT+AGG | - | chr7.3:46272549-46272568 | MS.gene96566:intron | 40.0% |
| ! | TGCATTTGAACTCTTTTGGG+TGG | + | chr7.3:46274070-46274089 | None:intergenic | 40.0% |
| !! | ACAGCTTTCAACGTCGTTTT+TGG | - | chr7.3:46272196-46272215 | MS.gene96566:CDS | 40.0% |
| !! | AGGTGTTACTCATGTTCCAA+AGG | - | chr7.3:46272956-46272975 | MS.gene96566:intron | 40.0% |
| !! | GCCTTTTGCTACTTCATTGT+TGG | + | chr7.3:46274124-46274143 | None:intergenic | 40.0% |
| !! | TTTTTGGGGAAAACCATCGA+AGG | - | chr7.3:46272212-46272231 | MS.gene96566:CDS | 40.0% |
| !!! | AGCTTTCAACGTCGTTTTTG+GGG | - | chr7.3:46272198-46272217 | MS.gene96566:CDS | 40.0% |
| !!! | CAGCTTTCAACGTCGTTTTT+GGG | - | chr7.3:46272197-46272216 | MS.gene96566:CDS | 40.0% |
| AAACCAGCAGCAGCATCAAA+TGG | - | chr7.3:46274189-46274208 | MS.gene96566:CDS | 45.0% | |
| ACACCTTTAATCTGCAGGGT+TGG | - | chr7.3:46272527-46272546 | MS.gene96566:intron | 45.0% | |
| ACTTTGAGTGGAGTTCCGTA+TGG | + | chr7.3:46272927-46272946 | None:intergenic | 45.0% | |
| ATACGGAACTCCACTCAAAG+TGG | - | chr7.3:46272926-46272945 | MS.gene96566:intron | 45.0% | |
| ATTGTTTGCAGGAGGGTTAC+AGG | - | chr7.3:46272132-46272151 | MS.gene96566:CDS | 45.0% | |
| ATTTGCAGGAAATCAGTCCG+CGG | - | chr7.3:46272994-46273013 | MS.gene96566:intron | 45.0% | |
| CCACTCAAAGTGGTAGAGTT+AGG | - | chr7.3:46272936-46272955 | MS.gene96566:intron | 45.0% | |
| CCTAACTCTACCACTTTGAG+TGG | + | chr7.3:46272939-46272958 | None:intergenic | 45.0% | |
| CGAACACACCTTTAATCTGC+AGG | - | chr7.3:46272522-46272541 | MS.gene96566:intron | 45.0% | |
| CTGTCCATTGCTTGTAGACA+GGG | - | chr7.3:46273213-46273232 | MS.gene96566:intron | 45.0% | |
| GCATTCATCACCATGCTTGT+CGG | - | chr7.3:46273480-46273499 | MS.gene96566:CDS | 45.0% | |
| GTGCTGAACGATGTTGTCTA+TGG | - | chr7.3:46272621-46272640 | MS.gene96566:intron | 45.0% | |
| GTTCAGCACAACCAAGATGT+TGG | + | chr7.3:46272610-46272629 | None:intergenic | 45.0% | |
| TTGTTTGCAGGAGGGTTACA+GGG | - | chr7.3:46272133-46272152 | MS.gene96566:CDS | 45.0% | |
| ! | ACGAGACACTACCGGAATTT+TGG | + | chr7.3:46273752-46273771 | None:intergenic | 45.0% |
| ! | ATTTGAAGCAGGACTCACTG+TGG | + | chr7.3:46274034-46274053 | None:intergenic | 45.0% |
| ! | GGAAAACCATCGAAGGCATA+TGG | - | chr7.3:46272219-46272238 | MS.gene96566:CDS | 45.0% |
| ! | GGGAATAGCCTTTTTCTCAG+TGG | + | chr7.3:46274103-46274122 | None:intergenic | 45.0% |
| ! | TAAGTTTCAGGCAAGTACCG+CGG | + | chr7.3:46273014-46273033 | None:intergenic | 45.0% |
| AAAGCTGTCGAGCAAGTCCT+TGG | + | chr7.3:46272184-46272203 | None:intergenic | 50.0% | |
| ACACCATTTGATGCTGCTGC+TGG | + | chr7.3:46274195-46274214 | None:intergenic | 50.0% | |
| ACTGTGGAAGGCCTGAATTG+TGG | + | chr7.3:46274018-46274037 | None:intergenic | 50.0% | |
| AGATGTCCGATATGGCTGCT+AGG | - | chr7.3:46273613-46273632 | MS.gene96566:intron | 50.0% | |
| ATGTCCGATATGGCTGCTAG+GGG | - | chr7.3:46273615-46273634 | MS.gene96566:intron | 50.0% | |
| CACTCACCATATGCCTTCGA+TGG | + | chr7.3:46272228-46272247 | None:intergenic | 50.0% | |
| CCTGCTGGATCAACACCATA+CGG | - | chr7.3:46272909-46272928 | MS.gene96566:intron | 50.0% | |
| CTGATGACACGAGACACTAC+CGG | + | chr7.3:46273760-46273779 | None:intergenic | 50.0% | |
| CTTCAGGCACACAGGAATTG+TGG | - | chr7.3:46272842-46272861 | MS.gene96566:intron | 50.0% | |
| GACTCGAGTGGCCTGATAAT+GGG | + | chr7.3:46273578-46273597 | None:intergenic | 50.0% | |
| GATGTCCGATATGGCTGCTA+GGG | - | chr7.3:46273614-46273633 | MS.gene96566:intron | 50.0% | |
| GCACCAACCCTGCAGATTAA+AGG | + | chr7.3:46272533-46272552 | None:intergenic | 50.0% | |
| GCTGTCCATTGCTTGTAGAC+AGG | - | chr7.3:46273212-46273231 | MS.gene96566:intron | 50.0% | |
| GGAATACAACACCTTCCTGC+TGG | - | chr7.3:46272894-46272913 | MS.gene96566:intron | 50.0% | |
| GGCCTGAATTGTGGTACTTG+TGG | + | chr7.3:46274009-46274028 | None:intergenic | 50.0% | |
| TGACTCGAGTGGCCTGATAA+TGG | + | chr7.3:46273579-46273598 | None:intergenic | 50.0% | |
| !! | ACTCTTTTGGGTGGTGACTG+AGG | + | chr7.3:46274061-46274080 | None:intergenic | 50.0% |
| !! | ATGGTGTTGATCCAGCAGGA+AGG | + | chr7.3:46272908-46272927 | None:intergenic | 50.0% |
| ACCTCCCCTAGCAGCCATAT+CGG | + | chr7.3:46273622-46273641 | None:intergenic | 55.0% | |
| GAAGCAGGACTCACTGTGGA+AGG | + | chr7.3:46274030-46274049 | None:intergenic | 55.0% | |
| TGGTACTTGTGGAACACCGC+CGG | + | chr7.3:46273998-46274017 | None:intergenic | 55.0% | |
| !! | CCGTATGGTGTTGATCCAGC+AGG | + | chr7.3:46272912-46272931 | None:intergenic | 55.0% |
| !! | CCTGATAATGGGTGCGCCAA+CGG | + | chr7.3:46273567-46273586 | None:intergenic | 55.0% |
| CCGTTGGCGCACCCATTATC+AGG | - | chr7.3:46273564-46273583 | MS.gene96566:intron | 60.0% | |
| TCCGATATGGCTGCTAGGGG+AGG | - | chr7.3:46273618-46273637 | MS.gene96566:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 46272029 | 46274380 | 46272029 | ID=MS.gene96566 |
| chr7.3 | mRNA | 46272029 | 46274380 | 46272029 | ID=MS.gene96566.t1;Parent=MS.gene96566 |
| chr7.3 | exon | 46274372 | 46274380 | 46274372 | ID=MS.gene96566.t1.exon1;Parent=MS.gene96566.t1 |
| chr7.3 | CDS | 46274372 | 46274380 | 46274372 | ID=cds.MS.gene96566.t1;Parent=MS.gene96566.t1 |
| chr7.3 | exon | 46274169 | 46274266 | 46274169 | ID=MS.gene96566.t1.exon2;Parent=MS.gene96566.t1 |
| chr7.3 | CDS | 46274169 | 46274266 | 46274169 | ID=cds.MS.gene96566.t1;Parent=MS.gene96566.t1 |
| chr7.3 | exon | 46273245 | 46273561 | 46273245 | ID=MS.gene96566.t1.exon3;Parent=MS.gene96566.t1 |
| chr7.3 | CDS | 46273245 | 46273561 | 46273245 | ID=cds.MS.gene96566.t1;Parent=MS.gene96566.t1 |
| chr7.3 | exon | 46272029 | 46272450 | 46272029 | ID=MS.gene96566.t1.exon4;Parent=MS.gene96566.t1 |
| chr7.3 | CDS | 46272029 | 46272450 | 46272029 | ID=cds.MS.gene96566.t1;Parent=MS.gene96566.t1 |
| Gene Sequence |
| Protein sequence |
