Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene96590.t1 | XP_003598073.1 | 97.9 | 382 | 8 | 0 | 1 | 382 | 1 | 382 | 1.30E-209 | 738.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene96590.t1 | A1RYE4 | 34.5 | 264 | 148 | 5 | 106 | 361 | 58 | 304 | 5.7e-33 | 143.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene96590.t1 | G7J081 | 97.9 | 382 | 8 | 0 | 1 | 382 | 1 | 382 | 9.2e-210 | 738.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene012318 | MS.gene96590 | PPI |
MS.gene96590 | MS.gene073336 | PPI |
MS.gene96326 | MS.gene96590 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene96590.t1 | MTR_3g005970 | 97.906 | 382 | 8 | 0 | 1 | 382 | 1 | 382 | 0.0 | 775 |
MS.gene96590.t1 | MTR_4g005880 | 31.496 | 254 | 154 | 5 | 117 | 367 | 151 | 387 | 1.21e-29 | 120 |
MS.gene96590.t1 | MTR_1g107480 | 30.435 | 253 | 158 | 3 | 117 | 367 | 118 | 354 | 1.55e-29 | 120 |
MS.gene96590.t1 | MTR_8g033410 | 26.286 | 350 | 210 | 11 | 45 | 375 | 1 | 321 | 1.39e-27 | 111 |
MS.gene96590.t1 | MTR_8g033400 | 28.244 | 262 | 160 | 6 | 107 | 362 | 76 | 315 | 9.33e-26 | 106 |
MS.gene96590.t1 | MTR_8g033390 | 27.174 | 276 | 174 | 6 | 106 | 375 | 64 | 318 | 9.88e-26 | 106 |
MS.gene96590.t1 | MTR_4g012960 | 26.493 | 268 | 177 | 3 | 108 | 375 | 58 | 305 | 6.35e-25 | 103 |
MS.gene96590.t1 | MTR_4g013090 | 28.517 | 263 | 155 | 6 | 108 | 362 | 58 | 295 | 5.40e-24 | 101 |
MS.gene96590.t1 | MTR_4g013100 | 27.519 | 258 | 164 | 5 | 108 | 362 | 59 | 296 | 7.18e-24 | 100 |
MS.gene96590.t1 | MTR_6g007170 | 31.086 | 267 | 150 | 9 | 112 | 366 | 116 | 360 | 1.30e-21 | 95.5 |
MS.gene96590.t1 | MTR_2g101840 | 26.217 | 267 | 174 | 4 | 99 | 362 | 50 | 296 | 1.80e-20 | 91.3 |
MS.gene96590.t1 | MTR_7g075830 | 24.555 | 281 | 173 | 7 | 118 | 380 | 57 | 316 | 3.09e-17 | 82.0 |
MS.gene96590.t1 | MTR_6g007175 | 28.716 | 296 | 155 | 12 | 86 | 366 | 56 | 310 | 9.44e-17 | 80.9 |
MS.gene96590.t1 | MTR_4g013135 | 28.044 | 271 | 172 | 5 | 108 | 375 | 58 | 308 | 4.07e-15 | 75.9 |
MS.gene96590.t1 | MTR_1g112510 | 26.493 | 268 | 180 | 7 | 119 | 375 | 88 | 349 | 1.96e-14 | 74.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene96590.t1 | AT1G72190 | 63.158 | 380 | 130 | 3 | 5 | 382 | 2 | 373 | 2.49e-174 | 490 |
MS.gene96590.t1 | AT1G17745 | 31.707 | 287 | 174 | 8 | 85 | 366 | 111 | 380 | 3.02e-31 | 125 |
MS.gene96590.t1 | AT4G34200 | 31.102 | 254 | 155 | 5 | 117 | 367 | 124 | 360 | 1.48e-29 | 120 |
MS.gene96590.t1 | AT1G17745 | 29.299 | 314 | 173 | 9 | 85 | 366 | 111 | 407 | 1.84e-28 | 117 |
MS.gene96590.t1 | AT2G45630 | 28.897 | 263 | 162 | 5 | 118 | 375 | 91 | 333 | 7.14e-27 | 109 |
MS.gene96590.t1 | AT3G19480 | 30.709 | 254 | 156 | 5 | 117 | 367 | 109 | 345 | 1.88e-26 | 111 |
MS.gene96590.t1 | AT1G12550 | 27.376 | 263 | 163 | 7 | 105 | 361 | 62 | 302 | 8.56e-23 | 98.2 |
MS.gene96590.t1 | AT5G14780 | 32.773 | 238 | 128 | 8 | 125 | 351 | 101 | 317 | 1.18e-22 | 98.2 |
MS.gene96590.t1 | AT5G14780 | 32.773 | 238 | 128 | 8 | 125 | 351 | 113 | 329 | 1.57e-22 | 98.2 |
MS.gene96590.t1 | AT5G14780 | 33.473 | 239 | 125 | 9 | 125 | 351 | 127 | 343 | 1.76e-22 | 98.2 |
MS.gene96590.t1 | AT1G79870 | 28.364 | 275 | 173 | 8 | 108 | 378 | 58 | 312 | 1.70e-20 | 91.3 |
MS.gene96590.t1 | AT1G79870 | 25.735 | 272 | 165 | 7 | 108 | 378 | 58 | 293 | 4.75e-16 | 78.2 |
MS.gene96590.t1 | AT1G68010 | 26.966 | 267 | 180 | 6 | 119 | 375 | 88 | 349 | 7.62e-15 | 75.9 |
MS.gene96590.t1 | AT1G68010 | 27.027 | 259 | 174 | 6 | 119 | 367 | 88 | 341 | 2.38e-14 | 73.9 |
MS.gene96590.t1 | AT1G68010 | 26.866 | 268 | 180 | 7 | 119 | 375 | 88 | 350 | 2.45e-13 | 71.2 |
Find 78 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTATCGGTGATACTTTATT+TGG | 0.071786 | 3.1:+1197479 | MS.gene96590:CDS |
GATAATGTAGATATTCATTT+TGG | 0.088675 | 3.1:+1198475 | MS.gene96590:intron |
CTTCATTTCTTCCATGAAAA+AGG | 0.182361 | 3.1:+1199034 | MS.gene96590:CDS |
TTTATTTCAGGGTGCCCTTC+TGG | 0.268864 | 3.1:+1199921 | MS.gene96590:intron |
AAATTTCAATATCTGATCAT+TGG | 0.336562 | 3.1:-1200055 | None:intergenic |
TCCAAGCTTCCTTTGCTGTA+TGG | 0.363828 | 3.1:-1197453 | None:intergenic |
AAGACCCAACATTAGATATA+TGG | 0.364315 | 3.1:-1196645 | None:intergenic |
CTATCGGTGATACTTTATTT+GGG | 0.376577 | 3.1:+1197480 | MS.gene96590:CDS |
AATTTCAATATCTGATCATT+GGG | 0.380747 | 3.1:-1200054 | None:intergenic |
AGAGAAGAGAAGTGAGTGTT+GGG | 0.398307 | 3.1:-1193300 | None:intergenic |
CTCCTAAGTGTCCGGATTCA+AGG | 0.399021 | 3.1:-1199993 | None:intergenic |
ATCATGACTCCTCATATTGC+AGG | 0.400259 | 3.1:+1200087 | MS.gene96590:CDS |
GCACGGCGATTGAAACCATT+TGG | 0.401430 | 3.1:+1198524 | MS.gene96590:CDS |
TACTACACAAACATGATAGT+TGG | 0.402501 | 3.1:-1196359 | None:intergenic |
ATCTGATCATTGGGATCAAA+TGG | 0.411289 | 3.1:-1200045 | None:intergenic |
AGGATCCCCAGTGGTGCTAC+TGG | 0.419307 | 3.1:+1196596 | MS.gene96590:CDS |
TAGAGATGTACCTTGATAGA+TGG | 0.426362 | 3.1:-1194427 | None:intergenic |
TTCAGTTGCATGTGCTGAAA+TGG | 0.438602 | 3.1:+1196622 | MS.gene96590:CDS |
TAGAGAAGAGAAGTGAGTGT+TGG | 0.439410 | 3.1:-1193301 | None:intergenic |
CTTATAATGCAGTATGGTGT+TGG | 0.439984 | 3.1:+1196433 | MS.gene96590:CDS |
AACCTTAGCCATGGATCTAT+AGG | 0.450234 | 3.1:-1200124 | None:intergenic |
TATTGCTACAAAGCGGAGTT+GGG | 0.456275 | 3.1:+1198556 | MS.gene96590:CDS |
ATGAAGCTTATAATGCAGTA+TGG | 0.460758 | 3.1:+1196427 | MS.gene96590:CDS |
CCTTGGGAATTTCTTCCAAC+GGG | 0.461257 | 3.1:-1196330 | None:intergenic |
TCCATACAGCAAAGGAAGCT+TGG | 0.462894 | 3.1:+1197452 | MS.gene96590:CDS |
ATGATAGTTGGCAATAGCCT+TGG | 0.466311 | 3.1:-1196347 | None:intergenic |
TCCTAGCCCTCCTAAGTGTC+CGG | 0.468903 | 3.1:-1200001 | None:intergenic |
AAAATCTGATGGAGAGAAAT+GGG | 0.472016 | 3.1:+1194302 | MS.gene96590:CDS |
CATGCTGGAAATCCTTTGAC+AGG | 0.473055 | 3.1:+1200349 | MS.gene96590:CDS |
TTATTGCTACAAAGCGGAGT+TGG | 0.473922 | 3.1:+1198555 | MS.gene96590:CDS |
AATGGCCATATATCTAATGT+TGG | 0.489549 | 3.1:+1196640 | MS.gene96590:CDS |
CTACAACAACTCAAGATTCG+AGG | 0.494217 | 3.1:+1193321 | MS.gene96590:CDS |
TGAATTTCCAGTAGCACCAC+TGG | 0.503475 | 3.1:-1196603 | None:intergenic |
ATGGCCATATATCTAATGTT+GGG | 0.506294 | 3.1:+1196641 | MS.gene96590:CDS |
TGATAGTTGGCAATAGCCTT+GGG | 0.519273 | 3.1:-1196346 | None:intergenic |
CTTAAACTTAAACAGTGAAA+CGG | 0.520932 | 3.1:+1198793 | MS.gene96590:CDS |
GCCTTGGGAATTTCTTCCAA+CGG | 0.523993 | 3.1:-1196331 | None:intergenic |
ACTATAGGTTGTTGGTGATG+TGG | 0.525653 | 3.1:+1200315 | MS.gene96590:intron |
GTGGTTCTTCAACTTCATGC+TGG | 0.529637 | 3.1:+1200334 | MS.gene96590:CDS |
ATCGATGCTGCAACAAAGCA+TGG | 0.530276 | 3.1:+1196560 | MS.gene96590:CDS |
AACCTTGAATCCGGACACTT+AGG | 0.536199 | 3.1:+1199991 | MS.gene96590:CDS |
GCAGAATCATCCATCTATCA+AGG | 0.542084 | 3.1:+1194417 | MS.gene96590:CDS |
GGCTAGGAACCGATGTTGCA+TGG | 0.544266 | 3.1:+1200016 | MS.gene96590:CDS |
ACTAACTCAATTCCTGTCAA+AGG | 0.547459 | 3.1:-1200361 | None:intergenic |
AGGAACCGATGTTGCATGGA+CGG | 0.557674 | 3.1:+1200020 | MS.gene96590:CDS |
TTATAATGCAGTATGGTGTT+GGG | 0.558492 | 3.1:+1196434 | MS.gene96590:CDS |
ACAGCCTCATAGTCTAAAAG+AGG | 0.560341 | 3.1:-1199961 | None:intergenic |
CTCCTATAGATCCATGGCTA+AGG | 0.568330 | 3.1:+1200122 | MS.gene96590:CDS |
CTTGAATCCGGACACTTAGG+AGG | 0.570448 | 3.1:+1199994 | MS.gene96590:CDS |
ACATTGGAATTGATTTAGCA+CGG | 0.573732 | 3.1:+1198507 | MS.gene96590:CDS |
CCAAATAAAGTATCACCGAT+AGG | 0.575385 | 3.1:-1197479 | None:intergenic |
AATGCAGTATGGTGTTGGGC+TGG | 0.576747 | 3.1:+1196438 | MS.gene96590:CDS |
CAGTATGGTGTTGGGCTGGA+AGG | 0.577929 | 3.1:+1196442 | MS.gene96590:CDS |
GAATTTCCAGTAGCACCACT+GGG | 0.581979 | 3.1:-1196602 | None:intergenic |
TCCGGACACTTAGGAGGGCT+AGG | 0.583295 | 3.1:+1200000 | MS.gene96590:CDS |
GTAGGTTGATGTTCTCCCGT+TGG | 0.587056 | 3.1:+1196315 | MS.gene96590:intron |
CTTCTGGTTAATGTTGCTAG+AGG | 0.594373 | 3.1:+1199937 | MS.gene96590:CDS |
CTCTAGCAACATTAACCAGA+AGG | 0.595259 | 3.1:-1199936 | None:intergenic |
TGCAGATTTCCATACAGCAA+AGG | 0.595617 | 3.1:+1197444 | MS.gene96590:CDS |
GAAGATACTATACTTGCTTG+CGG | 0.595687 | 3.1:-1196670 | None:intergenic |
AGCCACACAAACCTTAGCCA+TGG | 0.596880 | 3.1:-1200133 | None:intergenic |
TGATGATCTTGTTGATGTGA+AGG | 0.599066 | 3.1:+1198715 | MS.gene96590:CDS |
AGGAAGCTTGGAGAGCCTAT+CGG | 0.606938 | 3.1:+1197464 | MS.gene96590:CDS |
AGCATGGAATCAAAGTTGCT+AGG | 0.608422 | 3.1:+1196576 | MS.gene96590:CDS |
AGAACACTCCTATAGATCCA+TGG | 0.614020 | 3.1:+1200116 | MS.gene96590:CDS |
CCCGTTGGAAGAAATTCCCA+AGG | 0.614180 | 3.1:+1196330 | MS.gene96590:CDS |
GTTGTATATAGATGAGAACA+TGG | 0.621208 | 3.1:-1194385 | None:intergenic |
TCTGTAACGCCTGCAATATG+AGG | 0.621540 | 3.1:-1200096 | None:intergenic |
GATGATCTTGTTGATGTGAA+GGG | 0.630775 | 3.1:+1198716 | MS.gene96590:CDS |
TGGCTCCGTCCATGCAACAT+CGG | 0.631902 | 3.1:-1200025 | None:intergenic |
AAAGTGTGTTGTACTTGTTG+AGG | 0.638382 | 3.1:+1193249 | MS.gene96590:CDS |
AGATGAGAACATGGGAACTG+AGG | 0.641093 | 3.1:-1194376 | None:intergenic |
TTGAATCCGGACACTTAGGA+GGG | 0.659810 | 3.1:+1199995 | MS.gene96590:CDS |
TCTAGCAACATTAACCAGAA+GGG | 0.669159 | 3.1:-1199935 | None:intergenic |
TAAAAGTTATTGCTACAAAG+CGG | 0.687855 | 3.1:+1198549 | MS.gene96590:CDS |
TTGTATATAGATGAGAACAT+GGG | 0.718125 | 3.1:-1194384 | None:intergenic |
AAAGTTGCTAGGATCCCCAG+TGG | 0.758524 | 3.1:+1196587 | MS.gene96590:CDS |
AATTTCCAGTAGCACCACTG+GGG | 0.785993 | 3.1:-1196601 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.1 | gene | 1193239 | 1200390 | 1193239 | ID=MS.gene96590 |
chr3.1 | mRNA | 1193239 | 1200390 | 1193239 | ID=MS.gene96590.t1;Parent=MS.gene96590 |
chr3.1 | exon | 1193239 | 1193342 | 1193239 | ID=MS.gene96590.t1.exon1;Parent=MS.gene96590.t1 |
chr3.1 | CDS | 1193239 | 1193342 | 1193239 | ID=cds.MS.gene96590.t1;Parent=MS.gene96590.t1 |
chr3.1 | exon | 1194300 | 1194438 | 1194300 | ID=MS.gene96590.t1.exon2;Parent=MS.gene96590.t1 |
chr3.1 | CDS | 1194300 | 1194438 | 1194300 | ID=cds.MS.gene96590.t1;Parent=MS.gene96590.t1 |
chr3.1 | exon | 1196319 | 1196463 | 1196319 | ID=MS.gene96590.t1.exon3;Parent=MS.gene96590.t1 |
chr3.1 | CDS | 1196319 | 1196463 | 1196319 | ID=cds.MS.gene96590.t1;Parent=MS.gene96590.t1 |
chr3.1 | exon | 1196552 | 1196679 | 1196552 | ID=MS.gene96590.t1.exon4;Parent=MS.gene96590.t1 |
chr3.1 | CDS | 1196552 | 1196679 | 1196552 | ID=cds.MS.gene96590.t1;Parent=MS.gene96590.t1 |
chr3.1 | exon | 1197437 | 1197508 | 1197437 | ID=MS.gene96590.t1.exon5;Parent=MS.gene96590.t1 |
chr3.1 | CDS | 1197437 | 1197508 | 1197437 | ID=cds.MS.gene96590.t1;Parent=MS.gene96590.t1 |
chr3.1 | exon | 1198485 | 1198614 | 1198485 | ID=MS.gene96590.t1.exon6;Parent=MS.gene96590.t1 |
chr3.1 | CDS | 1198485 | 1198614 | 1198485 | ID=cds.MS.gene96590.t1;Parent=MS.gene96590.t1 |
chr3.1 | exon | 1198708 | 1198814 | 1198708 | ID=MS.gene96590.t1.exon7;Parent=MS.gene96590.t1 |
chr3.1 | CDS | 1198708 | 1198814 | 1198708 | ID=cds.MS.gene96590.t1;Parent=MS.gene96590.t1 |
chr3.1 | exon | 1199014 | 1199055 | 1199014 | ID=MS.gene96590.t1.exon8;Parent=MS.gene96590.t1 |
chr3.1 | CDS | 1199014 | 1199055 | 1199014 | ID=cds.MS.gene96590.t1;Parent=MS.gene96590.t1 |
chr3.1 | exon | 1199931 | 1200143 | 1199931 | ID=MS.gene96590.t1.exon9;Parent=MS.gene96590.t1 |
chr3.1 | CDS | 1199931 | 1200143 | 1199931 | ID=cds.MS.gene96590.t1;Parent=MS.gene96590.t1 |
chr3.1 | exon | 1200322 | 1200390 | 1200322 | ID=MS.gene96590.t1.exon10;Parent=MS.gene96590.t1 |
chr3.1 | CDS | 1200322 | 1200390 | 1200322 | ID=cds.MS.gene96590.t1;Parent=MS.gene96590.t1 |
Gene Sequence |
Protein sequence |