AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene96638

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96638.t1 MTR_5g057670 96.250 160 6 0 28 187 32 191 9.64e-113 319
MS.gene96638.t1 MTR_5g057335 96.250 160 6 0 28 187 32 191 9.64e-113 319
MS.gene96638.t1 MTR_4g089100 49.600 125 63 0 41 165 40 164 1.48e-43 143
MS.gene96638.t1 MTR_1g109660 41.497 147 83 1 40 186 41 184 4.76e-37 127
MS.gene96638.t1 MTR_2g079830 48.062 129 67 0 40 168 40 168 2.44e-36 125
MS.gene96638.t1 MTR_1g109700 36.000 150 96 0 37 186 36 185 3.57e-30 109
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96638.t1 AT1G13380 71.875 160 42 1 28 187 32 188 5.53e-71 213
MS.gene96638.t1 AT4G27435 49.231 130 66 0 42 171 42 171 4.89e-43 142
MS.gene96638.t1 AT1G61065 48.413 126 65 0 40 165 39 164 4.38e-41 137
MS.gene96638.t1 AT3G15480 42.446 139 79 1 28 165 28 166 2.36e-39 132
MS.gene96638.t1 AT1G52910 44.615 130 70 2 38 165 37 166 1.01e-34 120
MS.gene96638.t1 AT1G68220 39.726 146 86 2 40 184 41 185 1.38e-33 118
MS.gene96638.t1 AT5G17210 31.707 123 81 2 42 163 45 165 5.73e-11 59.7

Find 51 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTTCCTATTTCTTCTTTC+AGG 0.118110 5.3:+45798452 MS.gene96638:CDS
ATAAATAATTCCCCGGTATT+TGG 0.197206 5.3:-45799327 None:intergenic
TTCAGGTGAATCACTGCTTA+TGG 0.206084 5.3:+45798469 MS.gene96638:CDS
TCAGATGTTGCAACTGGTTA+TGG 0.298329 5.3:+45798422 MS.gene96638:CDS
TTTGGGAGGCCTTTAACCCC+TGG 0.341537 5.3:+45798512 MS.gene96638:CDS
TCAGGTGAATCACTGCTTAT+GGG 0.342216 5.3:+45798470 MS.gene96638:CDS
ATTCACCTGAAAGAAGAAAT+AGG 0.343625 5.3:-45798457 None:intergenic
GTCTGTCGGGGTAGGGAATC+AGG 0.360080 5.3:-45797838 None:intergenic
AGGAAAGGCATCTTCATTAC+CGG 0.367227 5.3:+45799377 MS.gene96638:CDS
ACTTCTCCTGTGAAAGTTTG+AGG 0.369772 5.3:+45799357 MS.gene96638:CDS
CAATATGTTTCATTTGTTCC+TGG 0.388667 5.3:-45798389 None:intergenic
AGAAGAAAGAAAATATATAA+TGG 0.392892 5.3:-45798552 None:intergenic
TTGGGAGGCCTTTAACCCCT+GGG 0.398501 5.3:+45798513 MS.gene96638:CDS
CACTTTCTCAGAAGACCAAT+CGG 0.400256 5.3:+45799474 MS.gene96638:CDS
TCCCCGGTATTTGGTGTGAT+AGG 0.408796 5.3:-45799318 None:intergenic
GTGACAAAGTGCATGTGCTT+TGG 0.415268 5.3:+45798494 MS.gene96638:CDS
GCCTTTCCTCAAACTTTCAC+AGG 0.425540 5.3:-45799363 None:intergenic
TACAGTTCAGATGTTGCAAC+TGG 0.428312 5.3:+45798416 MS.gene96638:CDS
TGACAAAGTGCATGTGCTTT+GGG 0.430960 5.3:+45798495 MS.gene96638:CDS
CTCGATTCTGTTACACCCTC+TGG 0.435234 5.3:+45797895 MS.gene96638:CDS
TGTTCCTGGAGTTGTGTGAA+TGG 0.437125 5.3:-45798375 None:intergenic
AAAACAATGGAGGGTCTGTC+GGG 0.462024 5.3:-45797851 None:intergenic
CAAGGTCAATCATGCATGTC+CGG 0.491279 5.3:-45799519 None:intergenic
AATGGAGGGTCTGTCGGGGT+AGG 0.492013 5.3:-45797846 None:intergenic
ATGCCTATCACACCAAATAC+CGG 0.505251 5.3:+45799315 MS.gene96638:CDS
ATGGAGGGTCTGTCGGGGTA+GGG 0.506121 5.3:-45797845 None:intergenic
CGATTGGTCTTCTGAGAAAG+TGG 0.515883 5.3:-45799473 None:intergenic
GCAGAATCATGCTTAATAGC+TGG 0.536563 5.3:+45799281 MS.gene96638:CDS
TGATTCTGCAACCAGAAAAG+TGG 0.540613 5.3:-45799267 None:intergenic
AATCGGGTTAGTTCCACGAT+TGG 0.543860 5.3:+45799491 MS.gene96638:CDS
TTGATAACCCCTAGATGAGA+AGG 0.550217 5.3:+45797813 None:intergenic
TGCCTATCACACCAAATACC+GGG 0.552373 5.3:+45799316 MS.gene96638:CDS
TCCTGTGAAAGTTTGAGGAA+AGG 0.553407 5.3:+45799362 MS.gene96638:CDS
ACTTTCTCAGAAGACCAATC+GGG 0.557107 5.3:+45799475 MS.gene96638:CDS
TACAACGATGAAAATTGCTC+CGG 0.580379 5.3:-45799396 None:intergenic
GGAACCATTCACACAACTCC+AGG 0.583570 5.3:+45798371 MS.gene96638:CDS
AGTTCCACGATTGGAATGAC+CGG 0.588851 5.3:+45799500 MS.gene96638:CDS
TGGGAGGCCTTTAACCCCTG+GGG 0.589713 5.3:+45798514 MS.gene96638:CDS
AATCGTGGAACTAACCCGAT+TGG 0.605332 5.3:-45799489 None:intergenic
TCTGAGCATAAATAATTCCC+CGG 0.610710 5.3:-45799334 None:intergenic
GTTGCAACTGGTTATGGAGT+GGG 0.613168 5.3:+45798428 MS.gene96638:CDS
GGGAGGCCTTTAACCCCTGG+GGG 0.642259 5.3:+45798515 MS.gene96638:CDS
CTTCTGAGAAAGTGGAGTAG+TGG 0.649249 5.3:-45799465 None:intergenic
ATGTCCGGTCATTCCAATCG+TGG 0.657041 5.3:-45799504 None:intergenic
CTACTACATGTACTTCACAA+AGG 0.667346 5.3:+45799439 MS.gene96638:CDS
GCCTATCACACCAAATACCG+GGG 0.675980 5.3:+45799317 MS.gene96638:CDS
AAACAATGGAGGGTCTGTCG+GGG 0.680417 5.3:-45797850 None:intergenic
TGTTGCAACTGGTTATGGAG+TGG 0.682410 5.3:+45798427 MS.gene96638:CDS
CAAAGTGCATGTGCTTTGGG+AGG 0.685983 5.3:+45798498 MS.gene96638:CDS
CAGAGGGTGTAACAGAATCG+AGG 0.689372 5.3:-45797894 None:intergenic
AGGGTGTAACAGAATCGAGG+AGG 0.732119 5.3:-45797891 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAGAAAGAAAATATATAA+TGG - chr5.3:45798555-45798574 None:intergenic 15.0%
!!! ATTATTGCAAATTTCATTTT+TGG + chr5.3:45798702-45798721 MS.gene96638:intron 15.0%
!!! CTTCATATTTTACATTAATT+TGG + chr5.3:45798321-45798340 MS.gene96638:intron 15.0%
!!! TTATATATTTTCTTTCTTCT+TGG + chr5.3:45798555-45798574 MS.gene96638:CDS 15.0%
!! AAAACAAAAAACACATATAG+TGG - chr5.3:45799104-45799123 None:intergenic 20.0%
!! ACGATAAATATCCATAAATA+TGG - chr5.3:45798928-45798947 None:intergenic 20.0%
!! AGAAAACATGCATAATAAAA+AGG - chr5.3:45797977-45797996 None:intergenic 20.0%
!! ATGTAAAAGAATTTGTAGAA+GGG - chr5.3:45798006-45798025 None:intergenic 20.0%
!!! TCATCTTTTCTTGATTTATT+TGG + chr5.3:45798729-45798748 MS.gene96638:intron 20.0%
!!! TTTGCAATAATTTTTTTCAC+TGG - chr5.3:45798693-45798712 None:intergenic 20.0%
!!! TTTTTTTTTCCTTTTTTCCA+GGG + chr5.3:45799244-45799263 MS.gene96638:intron 20.0%
!!! TTTTTTTTTTCCTTTTTTCC+AGG + chr5.3:45799243-45799262 MS.gene96638:intron 20.0%
! AAGTTATGAAAAACAATGGA+GGG - chr5.3:45797863-45797882 None:intergenic 25.0%
! ACTAACAAAGACCATATTTA+TGG + chr5.3:45798914-45798933 MS.gene96638:intron 25.0%
! AGTGAAGTTATGAAAAACAA+TGG - chr5.3:45797867-45797886 None:intergenic 25.0%
! ATGAAACAATGATTCCTATT+TGG - chr5.3:45799080-45799099 None:intergenic 25.0%
! ATGCATAATAAAAAGGATGA+TGG - chr5.3:45797970-45797989 None:intergenic 25.0%
! CAAATTTATTGTGATCTATG+AGG + chr5.3:45799173-45799192 MS.gene96638:intron 25.0%
! CATGTAAAAGAATTTGTAGA+AGG - chr5.3:45798007-45798026 None:intergenic 25.0%
! TCTTGATTTATTTGGTTGAT+TGG + chr5.3:45798737-45798756 MS.gene96638:intron 25.0%
! TGTAAAAGAATTTGTAGAAG+GGG - chr5.3:45798005-45798024 None:intergenic 25.0%
! TGTATGCTTTAATGTTTCAT+AGG + chr5.3:45798279-45798298 MS.gene96638:intron 25.0%
! TTTGGTTAGAATAACCAAAT+AGG + chr5.3:45799063-45799082 MS.gene96638:intron 25.0%
!! CTACAAATTCTTTTACATGA+AGG + chr5.3:45798008-45798027 MS.gene96638:intron 25.0%
!! CTGTCAATTTTATCTTCATA+GGG + chr5.3:45798118-45798137 MS.gene96638:intron 25.0%
!!! TAGATTGATTGTGTTGTTTA+AGG + chr5.3:45798177-45798196 MS.gene96638:intron 25.0%
!!! TTGTTTAAGGTATTTTGTGA+GGG + chr5.3:45798190-45798209 MS.gene96638:intron 25.0%
!!! TTTTTGTTTTGCTACATTGA+AGG - chr5.3:45798791-45798810 None:intergenic 25.0%
AAATGAGTAAGACACACTTT+GGG - chr5.3:45798819-45798838 None:intergenic 30.0%
AAGGGAAAAAAGAATATGTG+AGG - chr5.3:45798072-45798091 None:intergenic 30.0%
AGGGAAAAAAGAATATGTGA+GGG - chr5.3:45798071-45798090 None:intergenic 30.0%
AGTAAAACTAGAATTAGGCA+TGG + chr5.3:45798218-45798237 MS.gene96638:intron 30.0%
AGTAAAACTCGAATTAGTCA+TGG + chr5.3:45798241-45798260 MS.gene96638:intron 30.0%
ATAAATAATTCCCCGGTATT+TGG - chr5.3:45799330-45799349 None:intergenic 30.0%
ATGTCAAAAAGAAACATAGC+AGG + chr5.3:45798146-45798165 MS.gene96638:intron 30.0%
ATTCACCTGAAAGAAGAAAT+AGG - chr5.3:45798460-45798479 None:intergenic 30.0%
CAATATGTTTCATTTGTTCC+TGG - chr5.3:45798392-45798411 None:intergenic 30.0%
CATGGAGTAAAACTAGAATT+AGG + chr5.3:45798213-45798232 MS.gene96638:intron 30.0%
CCTATGAAGATAAAATTGAC+AGG - chr5.3:45798120-45798139 None:intergenic 30.0%
GAAGTTATGAAAAACAATGG+AGG - chr5.3:45797864-45797883 None:intergenic 30.0%
TTTATTCACATGAAGCTTCT+TGG + chr5.3:45799122-45799141 MS.gene96638:intron 30.0%
! AATAAAAAGGATGATGGCAT+AGG - chr5.3:45797964-45797983 None:intergenic 30.0%
! AATTTTCATCGTTGTAACGA+TGG + chr5.3:45799403-45799422 MS.gene96638:CDS 30.0%
! ATAAAAAGGATGATGGCATA+GGG - chr5.3:45797963-45797982 None:intergenic 30.0%
! CCTGTCAATTTTATCTTCAT+AGG + chr5.3:45798117-45798136 MS.gene96638:intron 30.0%
! TCTTCACTAGTGAATCATTT+TGG + chr5.3:45799206-45799225 MS.gene96638:intron 30.0%
! TTTTATCCGTTAATTGTGTG+AGG - chr5.3:45798985-45799004 None:intergenic 30.0%
!! GTTGTTTAAGGTATTTTGTG+AGG + chr5.3:45798189-45798208 MS.gene96638:intron 30.0%
!!! ACTCATTTTGGCTATAGATT+TGG + chr5.3:45799045-45799064 MS.gene96638:intron 30.0%
AACAAGGCAATGGAGTAAAA+GGG - chr5.3:45798090-45798109 None:intergenic 35.0%
AAGTGTGTCTTACTCATTTC+AGG + chr5.3:45798820-45798839 MS.gene96638:intron 35.0%
ACAATGCCTCACACAATTAA+CGG + chr5.3:45798976-45798995 MS.gene96638:intron 35.0%
AGTGTGTCTTACTCATTTCA+GGG + chr5.3:45798821-45798840 MS.gene96638:intron 35.0%
ATGGTCTTTGTTAGTCAACT+TGG - chr5.3:45798909-45798928 None:intergenic 35.0%
CTACTACATGTACTTCACAA+AGG + chr5.3:45799439-45799458 MS.gene96638:CDS 35.0%
CTATAGCCAAAATGAGTGAA+GGG - chr5.3:45799042-45799061 None:intergenic 35.0%
GAAATGAGTAAGACACACTT+TGG - chr5.3:45798820-45798839 None:intergenic 35.0%
TAACAAGGCAATGGAGTAAA+AGG - chr5.3:45798091-45798110 None:intergenic 35.0%
TACAACGATGAAAATTGCTC+CGG - chr5.3:45799399-45799418 None:intergenic 35.0%
TACTCATTTCAGGGTTCAAA+CGG + chr5.3:45798830-45798849 MS.gene96638:intron 35.0%
TCTATAGCCAAAATGAGTGA+AGG - chr5.3:45799043-45799062 None:intergenic 35.0%
TCTGAGCATAAATAATTCCC+CGG - chr5.3:45799337-45799356 None:intergenic 35.0%
! ACTCCATTGCCTTGTTAATT+GGG + chr5.3:45798094-45798113 MS.gene96638:intron 35.0%
! GCTTTCCTATTTCTTCTTTC+AGG + chr5.3:45798452-45798471 MS.gene96638:CDS 35.0%
! TACTCCATTGCCTTGTTAAT+TGG + chr5.3:45798093-45798112 MS.gene96638:intron 35.0%
!! GGTTGATTGGTTTAAGTATG+TGG + chr5.3:45798750-45798769 MS.gene96638:intron 35.0%
AAAAACAATGGAGGGTCTGT+CGG - chr5.3:45797855-45797874 None:intergenic 40.0%
ACTTCTCCTGTGAAAGTTTG+AGG + chr5.3:45799357-45799376 MS.gene96638:CDS 40.0%
ACTTTCTCAGAAGACCAATC+GGG + chr5.3:45799475-45799494 MS.gene96638:CDS 40.0%
AGAGCCAAACTAACGAACAA+AGG + chr5.3:45798873-45798892 MS.gene96638:intron 40.0%
AGGATTTGGAAATGTGAGGA+GGG - chr5.3:45797932-45797951 None:intergenic 40.0%
ATGCCTATCACACCAAATAC+CGG + chr5.3:45799315-45799334 MS.gene96638:CDS 40.0%
ATTGACAGGCCCAATTAACA+AGG - chr5.3:45798106-45798125 None:intergenic 40.0%
CACTTTCTCAGAAGACCAAT+CGG + chr5.3:45799474-45799493 MS.gene96638:CDS 40.0%
GCAGAATCATGCTTAATAGC+TGG + chr5.3:45799281-45799300 MS.gene96638:CDS 40.0%
GGGAAGTGAAAGAGAAAAAC+AGG - chr5.3:45798051-45798070 None:intergenic 40.0%
GTGTCCTTTGTTCGTTAGTT+TGG - chr5.3:45798880-45798899 None:intergenic 40.0%
TACAGTTCAGATGTTGCAAC+TGG + chr5.3:45798416-45798435 MS.gene96638:CDS 40.0%
TCAGATGTTGCAACTGGTTA+TGG + chr5.3:45798422-45798441 MS.gene96638:CDS 40.0%
TCAGGTGAATCACTGCTTAT+GGG + chr5.3:45798470-45798489 MS.gene96638:CDS 40.0%
TCCTGTGAAAGTTTGAGGAA+AGG + chr5.3:45799362-45799381 MS.gene96638:CDS 40.0%
TGACAAAGTGCATGTGCTTT+GGG + chr5.3:45798495-45798514 MS.gene96638:CDS 40.0%
TGATTCTGCAACCAGAAAAG+TGG - chr5.3:45799270-45799289 None:intergenic 40.0%
TTCAGGTGAATCACTGCTTA+TGG + chr5.3:45798469-45798488 MS.gene96638:CDS 40.0%
! ACACAACCCTTCACTCATTT+TGG + chr5.3:45799033-45799052 MS.gene96638:intron 40.0%
!! AGGAAAGGCATCTTCATTAC+CGG + chr5.3:45799377-45799396 MS.gene96638:CDS 40.0%
!! TAAGGTATTTTGTGAGGGCA+TGG + chr5.3:45798195-45798214 MS.gene96638:intron 40.0%
AAAACAATGGAGGGTCTGTC+GGG - chr5.3:45797854-45797873 None:intergenic 45.0%
AATCGTGGAACTAACCCGAT+TGG - chr5.3:45799492-45799511 None:intergenic 45.0%
AGGCCCAATTAACAAGGCAA+TGG - chr5.3:45798100-45798119 None:intergenic 45.0%
AGTTCCACGATTGGAATGAC+CGG + chr5.3:45799500-45799519 MS.gene96638:CDS 45.0%
ATAGGGAATTGGGGAGGATT+TGG - chr5.3:45797946-45797965 None:intergenic 45.0%
CTCTTCGCTATTGCTTCACA+GGG + chr5.3:45798350-45798369 MS.gene96638:intron 45.0%
GAAAAGTGGCCCTGGAAAAA+AGG - chr5.3:45799256-45799275 None:intergenic 45.0%
GAGGATTTGGAAATGTGAGG+AGG - chr5.3:45797933-45797952 None:intergenic 45.0%
GCCTTTCCTCAAACTTTCAC+AGG - chr5.3:45799366-45799385 None:intergenic 45.0%
GTGACAAAGTGCATGTGCTT+TGG + chr5.3:45798494-45798513 MS.gene96638:CDS 45.0%
GTTGCAACTGGTTATGGAGT+GGG + chr5.3:45798428-45798447 MS.gene96638:CDS 45.0%
TCTCTTCGCTATTGCTTCAC+AGG + chr5.3:45798349-45798368 MS.gene96638:intron 45.0%
TGCCTATCACACCAAATACC+GGG + chr5.3:45799316-45799335 MS.gene96638:CDS 45.0%
TGTGAAGCAATAGCGAAGAG+AGG - chr5.3:45798350-45798369 None:intergenic 45.0%
TGTTCCTGGAGTTGTGTGAA+TGG - chr5.3:45798378-45798397 None:intergenic 45.0%
TGTTGCAACTGGTTATGGAG+TGG + chr5.3:45798427-45798446 MS.gene96638:CDS 45.0%
TTCATCTGAGCACGCTGATA+CGG + chr5.3:45798613-45798632 MS.gene96638:intron 45.0%
! AGGATGATGGCATAGGGAAT+TGG - chr5.3:45797957-45797976 None:intergenic 45.0%
! CTTCTGAGAAAGTGGAGTAG+TGG - chr5.3:45799468-45799487 None:intergenic 45.0%
! CTTTTACATGAAGGCCTCGA+TGG + chr5.3:45798017-45798036 MS.gene96638:intron 45.0%
! GATGATGGCATAGGGAATTG+GGG - chr5.3:45797955-45797974 None:intergenic 45.0%
! GGATGATGGCATAGGGAATT+GGG - chr5.3:45797956-45797975 None:intergenic 45.0%
!! AATCGGGTTAGTTCCACGAT+TGG + chr5.3:45799491-45799510 MS.gene96638:CDS 45.0%
!! CGATTGGTCTTCTGAGAAAG+TGG - chr5.3:45799476-45799495 None:intergenic 45.0%
!! CGTTAGTTTGGCTCTCGAAT+GGG - chr5.3:45798868-45798887 None:intergenic 45.0%
!! TCGTTAGTTTGGCTCTCGAA+TGG - chr5.3:45798869-45798888 None:intergenic 45.0%
!!! TTTTTCCAGGGCCACTTTTC+TGG + chr5.3:45799256-45799275 MS.gene96638:intron 45.0%
AAACAATGGAGGGTCTGTCG+GGG - chr5.3:45797853-45797872 None:intergenic 50.0%
AACAGGCTTGAAAGCCATCG+AGG - chr5.3:45798034-45798053 None:intergenic 50.0%
AGGGAGACGAGTATACCAGA+GGG - chr5.3:45797913-45797932 None:intergenic 50.0%
AGGGTGTAACAGAATCGAGG+AGG - chr5.3:45797894-45797913 None:intergenic 50.0%
ATGTCCGGTCATTCCAATCG+TGG - chr5.3:45799507-45799526 None:intergenic 50.0%
CTCGATTCTGTTACACCCTC+TGG + chr5.3:45797895-45797914 MS.gene96638:CDS 50.0%
GAAGCAATAGCGAAGAGAGG+AGG - chr5.3:45798347-45798366 None:intergenic 50.0%
GCCTATCACACCAAATACCG+GGG + chr5.3:45799317-45799336 MS.gene96638:CDS 50.0%
GGAACCATTCACACAACTCC+AGG + chr5.3:45798371-45798390 MS.gene96638:CDS 50.0%
GGGGAGGATTTGGAAATGTG+AGG - chr5.3:45797936-45797955 None:intergenic 50.0%
! CAAAGTGCATGTGCTTTGGG+AGG + chr5.3:45798498-45798517 MS.gene96638:CDS 50.0%
! CAGAGGGTGTAACAGAATCG+AGG - chr5.3:45797897-45797916 None:intergenic 50.0%
!! TCCCCGGTATTTGGTGTGAT+AGG - chr5.3:45799321-45799340 None:intergenic 50.0%
ACCAAGCTCGATTTCCCCCA+GGG - chr5.3:45798532-45798551 None:intergenic 55.0%
CGATTTCCCCCAGGGGTTAA+AGG - chr5.3:45798524-45798543 None:intergenic 55.0%
GAGGGAGACGAGTATACCAG+AGG - chr5.3:45797914-45797933 None:intergenic 55.0%
GATGGCATAGGGAATTGGGG+AGG - chr5.3:45797952-45797971 None:intergenic 55.0%
TGCAACCAGAAAAGTGGCCC+TGG - chr5.3:45799264-45799283 None:intergenic 55.0%
TTGGGAGGCCTTTAACCCCT+GGG + chr5.3:45798513-45798532 MS.gene96638:CDS 55.0%
TTTGGGAGGCCTTTAACCCC+TGG + chr5.3:45798512-45798531 MS.gene96638:CDS 55.0%
AATGGAGGGTCTGTCGGGGT+AGG - chr5.3:45797849-45797868 None:intergenic 60.0%
ATGGAGGGTCTGTCGGGGTA+GGG - chr5.3:45797848-45797867 None:intergenic 60.0%
CCAAGCTCGATTTCCCCCAG+GGG - chr5.3:45798531-45798550 None:intergenic 60.0%
GACCAAGCTCGATTTCCCCC+AGG - chr5.3:45798533-45798552 None:intergenic 60.0%
GTCTGTCGGGGTAGGGAATC+AGG - chr5.3:45797841-45797860 None:intergenic 60.0%
TGGGAGGCCTTTAACCCCTG+GGG + chr5.3:45798514-45798533 MS.gene96638:CDS 60.0%
CCCCTGGGGGAAATCGAGCT+TGG + chr5.3:45798528-45798547 MS.gene96638:CDS 65.0%
GGGAGGCCTTTAACCCCTGG+GGG + chr5.3:45798515-45798534 MS.gene96638:CDS 65.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 45797827 45799532 45797827 ID=MS.gene96638
chr5.3 mRNA 45797827 45799532 45797827 ID=MS.gene96638.t1;Parent=MS.gene96638
chr5.3 exon 45797827 45797916 45797827 ID=MS.gene96638.t1.exon1;Parent=MS.gene96638.t1
chr5.3 CDS 45797827 45797916 45797827 ID=cds.MS.gene96638.t1;Parent=MS.gene96638.t1
chr5.3 exon 45798371 45798576 45798371 ID=MS.gene96638.t1.exon2;Parent=MS.gene96638.t1
chr5.3 CDS 45798371 45798576 45798371 ID=cds.MS.gene96638.t1;Parent=MS.gene96638.t1
chr5.3 exon 45799265 45799532 45799265 ID=MS.gene96638.t1.exon3;Parent=MS.gene96638.t1
chr5.3 CDS 45799265 45799532 45799265 ID=cds.MS.gene96638.t1;Parent=MS.gene96638.t1
Gene Sequence

>MS.gene96638

ATGAGAAGGAACCTGATTCCCTACCCCGACAGACCCTCCATTGTTTTTCATAACTTCACTGACACCTCCTCGATTCTGTTACACCCTCTGGTATACTCGTCTCCCTCCTCACATTTCCAAATCCTCCCCAATTCCCTATGCCATCATCCTTTTTATTATGCATGTTTTCTCTCTTCCCCTTCTACAAATTCTTTTACATGAAGGCCTCGATGGCTTTCAAGCCTGTTTTTCTCTTTCACTTCCCTCACATATTCTTTTTTCCCTTTTACTCCATTGCCTTGTTAATTGGGCCTGTCAATTTTATCTTCATAGGGAAACTATGTCAAAAAGAAACATAGCAGGAAGATGAGTAGATTGATTGTGTTGTTTAAGGTATTTTGTGAGGGCATGGAGTAAAACTAGAATTAGGCATGGAGTAAAACTCGAATTAGTCATGGATTTTGTCTGATATGTGTATGCTTTAATGTTTCATAGGCTGTGAAGTATGAATGTTTCTTCATATTTTACATTAATTTGGCCTCCTCTCTTCGCTATTGCTTCACAGGGAACCATTCACACAACTCCAGGAACAAATGAAACATATTGCGTTTACAGTTCAGATGTTGCAACTGGTTATGGAGTGGGTGCTTTCCTATTTCTTCTTTCAGGTGAATCACTGCTTATGGGTGTGACAAAGTGCATGTGCTTTGGGAGGCCTTTAACCCCTGGGGGAAATCGAGCTTGGTCCATTATATATTTTCTTTCTTCTTGGTAAGAATTCTGAGTTCATTATTTTACTAATTCTATTTCATCTGAGCACGCTGATACGGTGATATTATACTTGTTAAAACTATTGTGTTAAAAGTCACATGTTCTTATAATGTCCAGTGAAAAAAATTATTGCAAATTTCATTTTTGGCACATCATCTTTTCTTGATTTATTTGGTTGATTGGTTTAAGTATGTGGTGCTTTCAATATAGTCCTTCAATGTAGCAAAACAAAAAAAATTCCCAAAGTGTGTCTTACTCATTTCAGGGTTCAAACGGACTAGTAGAAGACCCATTCGAGAGCCAAACTAACGAACAAAGGACACAGAGAACCAAGTTGACTAACAAAGACCATATTTATGGATATTTATCGTAGTTTTAATACATTTAGTGACTATAGAGACAATGCCTCACACAATTAACGGATAAAATGAGTTTTTATTTGTTTATTTATACACAACACAACCCTTCACTCATTTTGGCTATAGATTTGGTTAGAATAACCAAATAGGAATCATTGTTTCATTCCACTATATGTGTTTTTTGTTTTTATTCACATGAAGCTTCTTGGTTTTACGAAAATGTTGCTCATGAGACATCAAATTTATTGTGATCTATGAGGTCATTCATTCTCTTCACTAGTGAATCATTTTGGTTTCAATTGCTATTTTTTTTTTTTCCTTTTTTCCAGGGCCACTTTTCTGGTTGCAGAATCATGCTTAATAGCTGGTGCAAAAAAGAATGCCTATCACACCAAATACCGGGGAATTATTTATGCTCAGAACTTCTCCTGTGAAAGTTTGAGGAAAGGCATCTTCATTACCGGAGCAATTTTCATCGTTGTAACGATGGTTCTTAACGTATACTACTACATGTACTTCACAAAGGCAACCACTACTCCACTTTCTCAGAAGACCAATCGGGTTAGTTCCACGATTGGAATGACCGGACATGCATGA
Protein sequence

>MS.gene96638.t1

MRRNLIPYPDRPSIVFHNFTDTSSILLHPLGTIHTTPGTNETYCVYSSDVATGYGVGAFLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWSIIYFLSSWATFLVAESCLIAGAKKNAYHTKYRGIIYAQNFSCESLRKGIFITGAIFIVVTMVLNVYYYMYFTKATTTPLSQKTNRVSSTIGMTGHA