Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053795.t1 | XP_003614686.1 | 98.1 | 157 | 3 | 0 | 38 | 194 | 35 | 191 | 5.10E-82 | 313.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053795.t1 | G7JX88 | 98.1 | 157 | 3 | 0 | 38 | 194 | 35 | 191 | 3.7e-82 | 313.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053795 | MS.gene65695 | 0.949994 | 4.10E-108 | -1.69E-46 |
| MS.gene053795 | MS.gene96638 | 0.946392 | 5.04E-105 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053795.t1 | MTR_5g057670 | 98.089 | 157 | 3 | 0 | 38 | 194 | 35 | 191 | 4.31e-113 | 320 |
| MS.gene053795.t1 | MTR_5g057335 | 98.089 | 157 | 3 | 0 | 38 | 194 | 35 | 191 | 4.31e-113 | 320 |
| MS.gene053795.t1 | MTR_4g089100 | 46.715 | 137 | 70 | 1 | 48 | 181 | 40 | 176 | 1.08e-43 | 144 |
| MS.gene053795.t1 | MTR_2g079830 | 43.226 | 155 | 86 | 1 | 23 | 175 | 14 | 168 | 7.86e-37 | 126 |
| MS.gene053795.t1 | MTR_1g109660 | 41.497 | 147 | 83 | 1 | 47 | 193 | 41 | 184 | 1.45e-36 | 126 |
| MS.gene053795.t1 | MTR_1g109700 | 36.000 | 150 | 96 | 0 | 44 | 193 | 36 | 185 | 4.38e-30 | 109 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053795.t1 | AT1G13380 | 75.497 | 151 | 34 | 1 | 44 | 194 | 41 | 188 | 1.10e-71 | 215 |
| MS.gene053795.t1 | AT4G27435 | 49.231 | 130 | 66 | 0 | 49 | 178 | 42 | 171 | 2.47e-43 | 143 |
| MS.gene053795.t1 | AT1G61065 | 46.099 | 141 | 75 | 1 | 47 | 186 | 39 | 179 | 2.31e-41 | 138 |
| MS.gene053795.t1 | AT3G15480 | 42.446 | 139 | 79 | 1 | 38 | 175 | 31 | 169 | 4.05e-39 | 132 |
| MS.gene053795.t1 | AT1G52910 | 43.939 | 132 | 72 | 2 | 45 | 174 | 37 | 168 | 1.29e-34 | 120 |
| MS.gene053795.t1 | AT1G68220 | 39.726 | 146 | 86 | 2 | 47 | 191 | 41 | 185 | 5.52e-33 | 117 |
| MS.gene053795.t1 | AT5G17210 | 31.707 | 123 | 81 | 2 | 49 | 170 | 45 | 165 | 9.86e-11 | 58.9 |
Find 49 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTTCCTATTTCTTCTTTC+AGG | 0.118110 | 5.1:+44794976 | MS.gene053795:CDS |
| ATAAATAATTCCCCGGTATT+TGG | 0.197206 | 5.1:-44795844 | None:intergenic |
| TTCAGGTGAATCACTGCTTA+TGG | 0.206084 | 5.1:+44794993 | MS.gene053795:CDS |
| TCAGATGTTGCAACTGGTTA+TGG | 0.298329 | 5.1:+44794946 | MS.gene053795:CDS |
| TTTGGGAGGCCTTTAACCCC+TGG | 0.341537 | 5.1:+44795036 | MS.gene053795:CDS |
| TCAGGTGAATCACTGCTTAT+GGG | 0.342216 | 5.1:+44794994 | MS.gene053795:CDS |
| ATTCACCTGAAAGAAGAAAT+AGG | 0.343625 | 5.1:-44794981 | None:intergenic |
| AGGAAAGGCATCTTCATTAC+CGG | 0.367227 | 5.1:+44795894 | MS.gene053795:CDS |
| ACTTCTCCTGTGAAAGTTTG+AGG | 0.369772 | 5.1:+44795874 | MS.gene053795:CDS |
| CAATATGTTTCATTTGTTCC+TGG | 0.388667 | 5.1:-44794913 | None:intergenic |
| AGAAGAAAGAAAATATATAA+TGG | 0.392892 | 5.1:-44795076 | None:intergenic |
| TTGGGAGGCCTTTAACCCCT+GGG | 0.398501 | 5.1:+44795037 | MS.gene053795:CDS |
| CACTTTCTCAGAAGACCAAT+CGG | 0.400256 | 5.1:+44795991 | MS.gene053795:CDS |
| TCCCCGGTATTTGGTGTGAT+AGG | 0.408796 | 5.1:-44795835 | None:intergenic |
| GTGACAAAGTGCATGTGCTT+TGG | 0.415268 | 5.1:+44795018 | MS.gene053795:CDS |
| GATTACCATGTCCTTTGAAA+TGG | 0.417044 | 5.1:+44793330 | None:intergenic |
| GCCTTTCCTCAAACTTTCAC+AGG | 0.425540 | 5.1:-44795880 | None:intergenic |
| TACAGTTCAGATGTTGCAAC+TGG | 0.428312 | 5.1:+44794940 | MS.gene053795:CDS |
| TGACAAAGTGCATGTGCTTT+GGG | 0.430960 | 5.1:+44795019 | MS.gene053795:CDS |
| CGACTGGCTAATTGCTATCA+TGG | 0.433563 | 5.1:-44793380 | None:intergenic |
| TGTTCCTGGAGTTGTGTGAA+TGG | 0.437125 | 5.1:-44794899 | None:intergenic |
| CAAGGTCAATCATGCATGTC+CGG | 0.491279 | 5.1:-44796036 | None:intergenic |
| ATGCCTATCACACCAAATAC+CGG | 0.505251 | 5.1:+44795832 | MS.gene053795:CDS |
| TGAAAATAACTCAGGGAATG+AGG | 0.515053 | 5.1:+44793919 | MS.gene053795:intron |
| CGATTGGTCTTCTGAGAAAG+TGG | 0.515883 | 5.1:-44795990 | None:intergenic |
| GCAGAATCATGCTTAATAGC+TGG | 0.536563 | 5.1:+44795798 | MS.gene053795:CDS |
| TGATTCTGCAACCAGAAAAG+TGG | 0.540613 | 5.1:-44795784 | None:intergenic |
| AATCGGGTTAGTTCCACGAT+TGG | 0.543860 | 5.1:+44796008 | MS.gene053795:CDS |
| TGCCTATCACACCAAATACC+GGG | 0.552373 | 5.1:+44795833 | MS.gene053795:CDS |
| TCCTGTGAAAGTTTGAGGAA+AGG | 0.553407 | 5.1:+44795879 | MS.gene053795:CDS |
| ACTTTCTCAGAAGACCAATC+GGG | 0.557107 | 5.1:+44795992 | MS.gene053795:CDS |
| CTCTAGCAACACCATTTCAA+AGG | 0.579400 | 5.1:-44793341 | None:intergenic |
| TACAACGATGAAAATTGCTC+CGG | 0.580379 | 5.1:-44795913 | None:intergenic |
| GGAACCATTCACACAACTCC+AGG | 0.583570 | 5.1:+44794895 | MS.gene053795:CDS |
| AGTTCCACGATTGGAATGAC+CGG | 0.588851 | 5.1:+44796017 | MS.gene053795:CDS |
| TGGGAGGCCTTTAACCCCTG+GGG | 0.589713 | 5.1:+44795038 | MS.gene053795:CDS |
| CAACACCATTTCAAAGGACA+TGG | 0.595424 | 5.1:-44793335 | None:intergenic |
| TTGAAAGCAGTACAGTCGAC+TGG | 0.601768 | 5.1:-44793396 | None:intergenic |
| AATCGTGGAACTAACCCGAT+TGG | 0.605332 | 5.1:-44796006 | None:intergenic |
| TCTGAGCATAAATAATTCCC+CGG | 0.610710 | 5.1:-44795851 | None:intergenic |
| GTTGCAACTGGTTATGGAGT+GGG | 0.613168 | 5.1:+44794952 | MS.gene053795:CDS |
| TACAAAGCAGAGTGACAATG+AGG | 0.625119 | 5.1:-44793420 | None:intergenic |
| GGGAGGCCTTTAACCCCTGG+GGG | 0.642259 | 5.1:+44795039 | MS.gene053795:CDS |
| CTTCTGAGAAAGTGGAGTAG+TGG | 0.649249 | 5.1:-44795982 | None:intergenic |
| ATGTCCGGTCATTCCAATCG+TGG | 0.657041 | 5.1:-44796021 | None:intergenic |
| CTACTACATGTACTTCACAA+AGG | 0.667346 | 5.1:+44795956 | MS.gene053795:CDS |
| GCCTATCACACCAAATACCG+GGG | 0.675980 | 5.1:+44795834 | MS.gene053795:CDS |
| TGTTGCAACTGGTTATGGAG+TGG | 0.682410 | 5.1:+44794951 | MS.gene053795:CDS |
| CAAAGTGCATGTGCTTTGGG+AGG | 0.685983 | 5.1:+44795022 | MS.gene053795:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCAATATAAAAAATATTTTC+TGG | - | chr5.1:44794068-44794087 | None:intergenic | 10.0% |
| !! | AGAAGAAAGAAAATATATAA+TGG | - | chr5.1:44795079-44795098 | None:intergenic | 15.0% |
| !!! | ATTATTGGAAATTTCATTTT+TGG | + | chr5.1:44795226-44795245 | MS.gene053795:intron | 15.0% |
| !!! | TTATATATTTTCTTTCTTCT+TGG | + | chr5.1:44795079-44795098 | MS.gene053795:CDS | 15.0% |
| !! | AAAACAAAAAACACATATAG+TGG | - | chr5.1:44795629-44795648 | None:intergenic | 20.0% |
| !! | AAATTCAGAAAAACAATGAA+GGG | - | chr5.1:44794404-44794423 | None:intergenic | 20.0% |
| !! | ACTAACAAAGAACATATTTA+TGG | + | chr5.1:44795439-44795458 | MS.gene053795:intron | 20.0% |
| !! | ATAATTGTCACAAAAATGAT+AGG | - | chr5.1:44793633-44793652 | None:intergenic | 20.0% |
| !! | CTTCTTAATTTACATTAACT+TGG | + | chr5.1:44794845-44794864 | MS.gene053795:intron | 20.0% |
| !! | TCTATGCTTTAATATTTCAT+AGG | + | chr5.1:44794803-44794822 | MS.gene053795:intron | 20.0% |
| !!! | AGATTAATTGTGTTGTTTTA+AGG | + | chr5.1:44794724-44794743 | MS.gene053795:intron | 20.0% |
| !!! | TCATCTTTTCTTGATTTATT+TGG | + | chr5.1:44795251-44795270 | MS.gene053795:intron | 20.0% |
| !!! | TGATTTTCTCAAATTATTAG+CGG | + | chr5.1:44794307-44794326 | MS.gene053795:intron | 20.0% |
| !!! | TGTTTTAAGGTATTTTATGT+GGG | + | chr5.1:44794737-44794756 | MS.gene053795:intron | 20.0% |
| !!! | TTGTTTTAAGGTATTTTATG+TGG | + | chr5.1:44794736-44794755 | MS.gene053795:intron | 20.0% |
| !!! | TTTCCAATAATTTTTTTCAC+TGG | - | chr5.1:44795217-44795236 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTCCTTTTTTCCA+GGG | + | chr5.1:44795761-44795780 | MS.gene053795:intron | 20.0% |
| !!! | TTTTTTTTTTCCTTTTTTCC+AGG | + | chr5.1:44795760-44795779 | MS.gene053795:intron | 20.0% |
| ! | ACCCAAAAAAAGATAAATGA+AGG | - | chr5.1:44793676-44793695 | None:intergenic | 25.0% |
| ! | AGAAAACATGCATAATACAA+AGG | - | chr5.1:44794523-44794542 | None:intergenic | 25.0% |
| ! | ATCATTTCTATATCCTATGA+AGG | - | chr5.1:44794340-44794359 | None:intergenic | 25.0% |
| ! | ATGAAACAATGATTCCTATT+TGG | - | chr5.1:44795605-44795624 | None:intergenic | 25.0% |
| ! | ATGTAAAAGAATTGGTAGAA+GGG | - | chr5.1:44794552-44794571 | None:intergenic | 25.0% |
| ! | CAAATTTATTGTGATCTATG+AGG | + | chr5.1:44795698-44795717 | MS.gene053795:intron | 25.0% |
| ! | GAAATTCAGAAAAACAATGA+AGG | - | chr5.1:44794405-44794424 | None:intergenic | 25.0% |
| ! | TATGTCAAAAAGAAACATAG+CGG | + | chr5.1:44794691-44794710 | MS.gene053795:intron | 25.0% |
| ! | TATTTAAGCACTAGAAAGAA+GGG | + | chr5.1:44793727-44793746 | MS.gene053795:intron | 25.0% |
| ! | TCTTGATTTATTTGGTTGAT+TGG | + | chr5.1:44795259-44795278 | MS.gene053795:intron | 25.0% |
| ! | TGTCCAGTGAAAAAAATTAT+TGG | + | chr5.1:44795211-44795230 | MS.gene053795:intron | 25.0% |
| ! | TTCAGTGTAATTATATGTGT+CGG | - | chr5.1:44794282-44794301 | None:intergenic | 25.0% |
| ! | TTTACATATGCATACAGTAA+GGG | + | chr5.1:44793998-44794017 | MS.gene053795:intron | 25.0% |
| ! | TTTGGTTAGAATAACCAAAT+AGG | + | chr5.1:44795588-44795607 | MS.gene053795:intron | 25.0% |
| !! | AAGGCTATTTCAAAGAAAAA+AGG | - | chr5.1:44793657-44793676 | None:intergenic | 25.0% |
| !! | CTGTCAATTTTATCTTCATA+GGG | + | chr5.1:44794664-44794683 | MS.gene053795:intron | 25.0% |
| !! | CTTTTTGTGAAAATAACTCA+GGG | + | chr5.1:44793912-44793931 | MS.gene053795:intron | 25.0% |
| !! | TCTTTTTGTGAAAATAACTC+AGG | + | chr5.1:44793911-44793930 | MS.gene053795:intron | 25.0% |
| !! | TGTTTTCTTTTGGTATTACA+TGG | + | chr5.1:44793510-44793529 | MS.gene053795:intron | 25.0% |
| !!! | AGCCTTCATTTATCTTTTTT+TGG | + | chr5.1:44793671-44793690 | MS.gene053795:intron | 25.0% |
| !!! | GCCTTCATTTATCTTTTTTT+GGG | + | chr5.1:44793672-44793691 | MS.gene053795:intron | 25.0% |
| !!! | TCTATTCCATTTTTGTTTGT+TGG | - | chr5.1:44794163-44794182 | None:intergenic | 25.0% |
| !!! | TTTTTGTTTTGCTACATTGA+AGG | - | chr5.1:44795313-44795332 | None:intergenic | 25.0% |
| AAATATTTGGAAATGTGAGG+AGG | - | chr5.1:44794475-44794494 | None:intergenic | 30.0% | |
| AAATGAGTAAGACACACTTT+GGG | - | chr5.1:44795341-44795360 | None:intergenic | 30.0% | |
| AACATGCATAATACAAAGGA+CGG | - | chr5.1:44794519-44794538 | None:intergenic | 30.0% | |
| AAGGGAAAAAAGAATATGAG+AGG | - | chr5.1:44794618-44794637 | None:intergenic | 30.0% | |
| AATATTTGGAAATGTGAGGA+GGG | - | chr5.1:44794474-44794493 | None:intergenic | 30.0% | |
| AGGAAAGTGAAAGAGAAAAA+CGG | - | chr5.1:44794598-44794617 | None:intergenic | 30.0% | |
| AGTAAAACTAGAATTAGGCA+TGG | + | chr5.1:44794765-44794784 | MS.gene053795:intron | 30.0% | |
| ATAAATAATTCCCCGGTATT+TGG | - | chr5.1:44795847-44795866 | None:intergenic | 30.0% | |
| ATGTCAAAAAGAAACATAGC+GGG | + | chr5.1:44794692-44794711 | MS.gene053795:intron | 30.0% | |
| ATGTTCTTTGTTAGTCAACT+TGG | - | chr5.1:44795434-44795453 | None:intergenic | 30.0% | |
| ATTCACCTGAAAGAAGAAAT+AGG | - | chr5.1:44794984-44795003 | None:intergenic | 30.0% | |
| CAATATGTTTCATTTGTTCC+TGG | - | chr5.1:44794916-44794935 | None:intergenic | 30.0% | |
| CATGGAGTAAAACTAGAATT+AGG | + | chr5.1:44794760-44794779 | MS.gene053795:intron | 30.0% | |
| CATGTAAAAGAATTGGTAGA+AGG | - | chr5.1:44794553-44794572 | None:intergenic | 30.0% | |
| CCTATGAAGATAAAATTGAC+AGG | - | chr5.1:44794666-44794685 | None:intergenic | 30.0% | |
| CTATTTAAGCACTAGAAAGA+AGG | + | chr5.1:44793726-44793745 | MS.gene053795:intron | 30.0% | |
| GTTTACATATGCATACAGTA+AGG | + | chr5.1:44793997-44794016 | MS.gene053795:intron | 30.0% | |
| TGTAAAAGAATTGGTAGAAG+GGG | - | chr5.1:44794551-44794570 | None:intergenic | 30.0% | |
| TTCCGTTCATATATGTGATA+CGG | + | chr5.1:44794042-44794061 | MS.gene053795:intron | 30.0% | |
| TTTCTATATCCTATGAAGGA+TGG | - | chr5.1:44794336-44794355 | None:intergenic | 30.0% | |
| ! | AAGGGATATTTCATTTTCTC+TGG | + | chr5.1:44794016-44794035 | MS.gene053795:intron | 30.0% |
| ! | AATTTTCATCGTTGTAACGA+TGG | + | chr5.1:44795920-44795939 | MS.gene053795:CDS | 30.0% |
| ! | ATTTTGCTTCCAGTATCATA+GGG | - | chr5.1:44794130-44794149 | None:intergenic | 30.0% |
| ! | CCTGTCAATTTTATCTTCAT+AGG | + | chr5.1:44794663-44794682 | MS.gene053795:intron | 30.0% |
| ! | CTACCAATTCTTTTACATGA+AGG | + | chr5.1:44794554-44794573 | MS.gene053795:intron | 30.0% |
| ! | CTTCTTTCTAGTGCTTAAAT+AGG | - | chr5.1:44793728-44793747 | None:intergenic | 30.0% |
| ! | TCTTCACTAGTGAATCATTT+TGG | + | chr5.1:44795731-44795750 | MS.gene053795:intron | 30.0% |
| ! | TTTTATCCGTTAATTGTGTG+AGG | - | chr5.1:44795510-44795529 | None:intergenic | 30.0% |
| !!! | ACTCATTTTGGCTATAGATT+TGG | + | chr5.1:44795570-44795589 | MS.gene053795:intron | 30.0% |
| !!! | TGAAGTCTCTTGTTTTCTTT+TGG | + | chr5.1:44793500-44793519 | MS.gene053795:intron | 30.0% |
| AAAATGATAGGCTACTCTAC+AGG | - | chr5.1:44793621-44793640 | None:intergenic | 35.0% | |
| AACAAGGCAATGGAGTAAAA+GGG | - | chr5.1:44794636-44794655 | None:intergenic | 35.0% | |
| AAGCAATGGTACAACATACT+GGG | + | chr5.1:44793551-44793570 | MS.gene053795:intron | 35.0% | |
| AAGTGTGTCTTACTCATTTC+AGG | + | chr5.1:44795342-44795361 | MS.gene053795:intron | 35.0% | |
| ACAATGCCTCACACAATTAA+CGG | + | chr5.1:44795501-44795520 | MS.gene053795:intron | 35.0% | |
| AGGCCTTCATGTAAAAGAAT+TGG | - | chr5.1:44794560-44794579 | None:intergenic | 35.0% | |
| AGTGTGTCTTACTCATTTCA+GGG | + | chr5.1:44795343-44795362 | MS.gene053795:intron | 35.0% | |
| ATGCGACCAACAAACAAAAA+TGG | + | chr5.1:44794154-44794173 | MS.gene053795:intron | 35.0% | |
| CTACTACATGTACTTCACAA+AGG | + | chr5.1:44795956-44795975 | MS.gene053795:CDS | 35.0% | |
| CTATAGCCAAAATGAGTGAA+GGG | - | chr5.1:44795567-44795586 | None:intergenic | 35.0% | |
| GAAAGAATACCTTCAAGCAA+TGG | + | chr5.1:44793537-44793556 | MS.gene053795:intron | 35.0% | |
| GAAATGAGTAAGACACACTT+TGG | - | chr5.1:44795342-44795361 | None:intergenic | 35.0% | |
| GAGTAACAATCATACAACAG+CGG | - | chr5.1:44793879-44793898 | None:intergenic | 35.0% | |
| GGAAAGTGAAAGAGAAAAAC+GGG | - | chr5.1:44794597-44794616 | None:intergenic | 35.0% | |
| GGATATAGAAATGATAACCC+TGG | + | chr5.1:44794345-44794364 | MS.gene053795:intron | 35.0% | |
| GGGAAATATTTGGAAATGTG+AGG | - | chr5.1:44794478-44794497 | None:intergenic | 35.0% | |
| TAACAAGGCAATGGAGTAAA+AGG | - | chr5.1:44794637-44794656 | None:intergenic | 35.0% | |
| TACAACGATGAAAATTGCTC+CGG | - | chr5.1:44795916-44795935 | None:intergenic | 35.0% | |
| TACTCATTTCAGGGTTCAAA+CGG | + | chr5.1:44795352-44795371 | MS.gene053795:intron | 35.0% | |
| TATGTTGTACCATTGCTTGA+AGG | - | chr5.1:44793549-44793568 | None:intergenic | 35.0% | |
| TCTATAGCCAAAATGAGTGA+AGG | - | chr5.1:44795568-44795587 | None:intergenic | 35.0% | |
| TCTGAGCATAAATAATTCCC+CGG | - | chr5.1:44795854-44795873 | None:intergenic | 35.0% | |
| TGAAAATAACTCAGGGAATG+AGG | + | chr5.1:44793919-44793938 | MS.gene053795:intron | 35.0% | |
| TTACCTTCTACTGTGTAAAG+AGG | + | chr5.1:44793701-44793720 | MS.gene053795:intron | 35.0% | |
| TTAGAATTTGTGAGACCAAG+AGG | - | chr5.1:44793841-44793860 | None:intergenic | 35.0% | |
| TTTATTCACACGAAGCTTCT+TGG | + | chr5.1:44795647-44795666 | MS.gene053795:intron | 35.0% | |
| ! | ACTCCATTGCCTTGTTAATT+GGG | + | chr5.1:44794640-44794659 | MS.gene053795:intron | 35.0% |
| ! | GATTTTGCTTCCAGTATCAT+AGG | - | chr5.1:44794131-44794150 | None:intergenic | 35.0% |
| ! | GCTTTCCTATTTCTTCTTTC+AGG | + | chr5.1:44794976-44794995 | MS.gene053795:CDS | 35.0% |
| ! | GGATATTTCATTTTCTCTGG+TGG | + | chr5.1:44794019-44794038 | MS.gene053795:intron | 35.0% |
| ! | GTAATTATATGTGTCGGTGT+CGG | - | chr5.1:44794276-44794295 | None:intergenic | 35.0% |
| ! | TACTCCATTGCCTTGTTAAT+TGG | + | chr5.1:44794639-44794658 | MS.gene053795:intron | 35.0% |
| !! | CATAGGCTTTGAAGTACTAA+TGG | + | chr5.1:44794820-44794839 | MS.gene053795:intron | 35.0% |
| !! | GGTTGATTGGTTTAAGTATG+TGG | + | chr5.1:44795272-44795291 | MS.gene053795:intron | 35.0% |
| !! | TAAGGTATTTTATGTGGGCA+TGG | + | chr5.1:44794742-44794761 | MS.gene053795:intron | 35.0% |
| AAAACAATGAAGGGTCTGTC+TGG | - | chr5.1:44794395-44794414 | None:intergenic | 40.0% | |
| AAACAATGAAGGGTCTGTCT+GGG | - | chr5.1:44794394-44794413 | None:intergenic | 40.0% | |
| AATGATAACCCTGGATGAGA+AGG | + | chr5.1:44794354-44794373 | MS.gene053795:intron | 40.0% | |
| ACTTCTCCTGTGAAAGTTTG+AGG | + | chr5.1:44795874-44795893 | MS.gene053795:CDS | 40.0% | |
| ACTTTCTCAGAAGACCAATC+GGG | + | chr5.1:44795992-44796011 | MS.gene053795:CDS | 40.0% | |
| AGAAAGAAGGGTTGACTAGA+TGG | + | chr5.1:44793739-44793758 | MS.gene053795:intron | 40.0% | |
| AGAGCCAAACTAACGAACAA+AGG | + | chr5.1:44795395-44795414 | MS.gene053795:intron | 40.0% | |
| AGGGTGTAACATATTCAAGG+AGG | - | chr5.1:44794435-44794454 | None:intergenic | 40.0% | |
| ATGCATAATACAAAGGACGG+TGG | - | chr5.1:44794516-44794535 | None:intergenic | 40.0% | |
| ATGCCTATCACACCAAATAC+CGG | + | chr5.1:44795832-44795851 | MS.gene053795:CDS | 40.0% | |
| ATTGACAGGCCCAATTAACA+AGG | - | chr5.1:44794652-44794671 | None:intergenic | 40.0% | |
| CAAGCAATGGTACAACATAC+TGG | + | chr5.1:44793550-44793569 | MS.gene053795:intron | 40.0% | |
| CACTTTCTCAGAAGACCAAT+CGG | + | chr5.1:44795991-44796010 | MS.gene053795:CDS | 40.0% | |
| CTCTAGCAACACCATTTCAA+AGG | - | chr5.1:44793344-44793363 | None:intergenic | 40.0% | |
| CTCTCAATTCCCTATGATAC+TGG | + | chr5.1:44794118-44794137 | MS.gene053795:intron | 40.0% | |
| CTTGAATATGTTACACCCTC+TGG | + | chr5.1:44794436-44794455 | MS.gene053795:intron | 40.0% | |
| GAGGATAGCTCAATAGTTAG+AGG | + | chr5.1:44793761-44793780 | MS.gene053795:intron | 40.0% | |
| GCAGAATCATGCTTAATAGC+TGG | + | chr5.1:44795798-44795817 | MS.gene053795:CDS | 40.0% | |
| GGCCGTATCACATATATGAA+CGG | - | chr5.1:44794047-44794066 | None:intergenic | 40.0% | |
| GTGTCCTTTGTTCGTTAGTT+TGG | - | chr5.1:44795402-44795421 | None:intergenic | 40.0% | |
| TACAAAGCAGAGTGACAATG+AGG | - | chr5.1:44793423-44793442 | None:intergenic | 40.0% | |
| TACAGTTCAGATGTTGCAAC+TGG | + | chr5.1:44794940-44794959 | MS.gene053795:CDS | 40.0% | |
| TCAGATGTTGCAACTGGTTA+TGG | + | chr5.1:44794946-44794965 | MS.gene053795:CDS | 40.0% | |
| TCAGGTGAATCACTGCTTAT+GGG | + | chr5.1:44794994-44795013 | MS.gene053795:CDS | 40.0% | |
| TCCTGTGAAAGTTTGAGGAA+AGG | + | chr5.1:44795879-44795898 | MS.gene053795:CDS | 40.0% | |
| TGACAAAGTGCATGTGCTTT+GGG | + | chr5.1:44795019-44795038 | MS.gene053795:CDS | 40.0% | |
| TGATCGTTCTATAAGGAGCA+TGG | - | chr5.1:44794187-44794206 | None:intergenic | 40.0% | |
| TGATTCTGCAACCAGAAAAG+TGG | - | chr5.1:44795787-44795806 | None:intergenic | 40.0% | |
| TGCTAGAATACATACACCGT+TGG | + | chr5.1:44793579-44793598 | MS.gene053795:intron | 40.0% | |
| TGCTCCTTATAGAACGATCA+CGG | + | chr5.1:44794187-44794206 | MS.gene053795:intron | 40.0% | |
| TTCAGGTGAATCACTGCTTA+TGG | + | chr5.1:44794993-44795012 | MS.gene053795:CDS | 40.0% | |
| ! | AATGTCTAGAACTCTCCTAG+TGG | - | chr5.1:44793802-44793821 | None:intergenic | 40.0% |
| ! | ACACAACCCTTCACTCATTT+TGG | + | chr5.1:44795558-44795577 | MS.gene053795:intron | 40.0% |
| ! | ATGTCTAGAACTCTCCTAGT+GGG | - | chr5.1:44793801-44793820 | None:intergenic | 40.0% |
| ! | CAGAGGGTGTAACATATTCA+AGG | - | chr5.1:44794438-44794457 | None:intergenic | 40.0% |
| !! | AGGAAAGGCATCTTCATTAC+CGG | + | chr5.1:44795894-44795913 | MS.gene053795:CDS | 40.0% |
| !! | CGTTAGTTTGGCTCTTGAAT+GGG | - | chr5.1:44795390-44795409 | None:intergenic | 40.0% |
| !! | CTAGGAGAGTTCTAGACATT+TGG | + | chr5.1:44793802-44793821 | MS.gene053795:intron | 40.0% |
| !! | TCGTTAGTTTGGCTCTTGAA+TGG | - | chr5.1:44795391-44795410 | None:intergenic | 40.0% |
| AAGAAGGGTTGACTAGATGG+AGG | + | chr5.1:44793742-44793761 | MS.gene053795:intron | 45.0% | |
| AAGGAGGAAATGGCAACACA+TGG | - | chr5.1:44793448-44793467 | None:intergenic | 45.0% | |
| AATACAAAGGACGGTGGCAT+AGG | - | chr5.1:44794510-44794529 | None:intergenic | 45.0% | |
| AATCAGGTTCCTTCTCATCC+AGG | - | chr5.1:44794366-44794385 | None:intergenic | 45.0% | |
| AATCGTGGAACTAACCCGAT+TGG | - | chr5.1:44796009-44796028 | None:intergenic | 45.0% | |
| ACAAATGGCATGCAGTCCAA+CGG | - | chr5.1:44793598-44793617 | None:intergenic | 45.0% | |
| AGGCCCAATTAACAAGGCAA+TGG | - | chr5.1:44794646-44794665 | None:intergenic | 45.0% | |
| AGGCTACTCTACAGGACAAA+TGG | - | chr5.1:44793613-44793632 | None:intergenic | 45.0% | |
| AGTTCCACGATTGGAATGAC+CGG | + | chr5.1:44796017-44796036 | MS.gene053795:CDS | 45.0% | |
| ATACAAAGGACGGTGGCATA+GGG | - | chr5.1:44794509-44794528 | None:intergenic | 45.0% | |
| ATCAGGTTCCTTCTCATCCA+GGG | - | chr5.1:44794365-44794384 | None:intergenic | 45.0% | |
| CTCTTTGCTCTTGCTTCACA+GGG | + | chr5.1:44794874-44794893 | MS.gene053795:intron | 45.0% | |
| GAAAAGTGGCCCTGGAAAAA+AGG | - | chr5.1:44795773-44795792 | None:intergenic | 45.0% | |
| GCCTTTCCTCAAACTTTCAC+AGG | - | chr5.1:44795883-44795902 | None:intergenic | 45.0% | |
| GGGGATTGGAGGGAAATATT+TGG | - | chr5.1:44794488-44794507 | None:intergenic | 45.0% | |
| GGTCCTCTTTACACAGTAGA+AGG | - | chr5.1:44793707-44793726 | None:intergenic | 45.0% | |
| GTGACAAAGTGCATGTGCTT+TGG | + | chr5.1:44795018-44795037 | MS.gene053795:CDS | 45.0% | |
| GTGTCCGTGATCGTTCTATA+AGG | - | chr5.1:44794194-44794213 | None:intergenic | 45.0% | |
| GTTGCAACTGGTTATGGAGT+GGG | + | chr5.1:44794952-44794971 | MS.gene053795:CDS | 45.0% | |
| TAGAGAGAAGAACACCCACT+AGG | + | chr5.1:44793784-44793803 | MS.gene053795:intron | 45.0% | |
| TAGCGGTATCCATCCTTCAT+AGG | + | chr5.1:44794324-44794343 | MS.gene053795:intron | 45.0% | |
| TCTCTTTGCTCTTGCTTCAC+AGG | + | chr5.1:44794873-44794892 | MS.gene053795:intron | 45.0% | |
| TGCCTATCACACCAAATACC+GGG | + | chr5.1:44795833-44795852 | MS.gene053795:CDS | 45.0% | |
| TGTTCCTGGAGTTGTGTGAA+TGG | - | chr5.1:44794902-44794921 | None:intergenic | 45.0% | |
| TGTTGCAACTGGTTATGGAG+TGG | + | chr5.1:44794951-44794970 | MS.gene053795:CDS | 45.0% | |
| TTCATCTGAGCACGCTGATA+CGG | + | chr5.1:44795137-44795156 | MS.gene053795:intron | 45.0% | |
| TTGAAAGCAGTACAGTCGAC+TGG | - | chr5.1:44793399-44793418 | None:intergenic | 45.0% | |
| ! | CGACTGGCTAATTGCTATCA+TGG | - | chr5.1:44793383-44793402 | None:intergenic | 45.0% |
| ! | CTTCTGAGAAAGTGGAGTAG+TGG | - | chr5.1:44795985-44796004 | None:intergenic | 45.0% |
| ! | CTTTTACATGAAGGCCTCGA+TGG | + | chr5.1:44794563-44794582 | MS.gene053795:intron | 45.0% |
| !! | AATCGGGTTAGTTCCACGAT+TGG | + | chr5.1:44796008-44796027 | MS.gene053795:CDS | 45.0% |
| !! | CGATTGGTCTTCTGAGAAAG+TGG | - | chr5.1:44795993-44796012 | None:intergenic | 45.0% |
| !!! | TTTTTCCAGGGCCACTTTTC+TGG | + | chr5.1:44795773-44795792 | MS.gene053795:intron | 45.0% |
| ACTGGGACATGTCTAATCCG+AGG | - | chr5.1:44794218-44794237 | None:intergenic | 50.0% | |
| AGACCAAGAGGTCACAGGTT+AGG | - | chr5.1:44793829-44793848 | None:intergenic | 50.0% | |
| AGGGAGACTGAGTATACCAG+AGG | - | chr5.1:44794455-44794474 | None:intergenic | 50.0% | |
| ATGTCCGGTCATTCCAATCG+TGG | - | chr5.1:44796024-44796043 | None:intergenic | 50.0% | |
| GATTAGACATGTCCCAGTGC+CGG | + | chr5.1:44794220-44794239 | MS.gene053795:intron | 50.0% | |
| GCCTATCACACCAAATACCG+GGG | + | chr5.1:44795834-44795853 | MS.gene053795:CDS | 50.0% | |
| GGAACCATTCACACAACTCC+AGG | + | chr5.1:44794895-44794914 | MS.gene053795:CDS | 50.0% | |
| GGGAGACTGAGTATACCAGA+GGG | - | chr5.1:44794454-44794473 | None:intergenic | 50.0% | |
| GTCTGTCTGGGTAGTGAATC+AGG | - | chr5.1:44794382-44794401 | None:intergenic | 50.0% | |
| TACAAAGGACGGTGGCATAG+GGG | - | chr5.1:44794508-44794527 | None:intergenic | 50.0% | |
| TTGCGCATGCAAGGAGGAAA+TGG | - | chr5.1:44793458-44793477 | None:intergenic | 50.0% | |
| TTGTGAGACCAAGAGGTCAC+AGG | - | chr5.1:44793834-44793853 | None:intergenic | 50.0% | |
| ! | CAAAGTGCATGTGCTTTGGG+AGG | + | chr5.1:44795022-44795041 | MS.gene053795:CDS | 50.0% |
| !! | TCCCCGGTATTTGGTGTGAT+AGG | - | chr5.1:44795838-44795857 | None:intergenic | 50.0% |
| ACAAAGGACGGTGGCATAGG+GGG | - | chr5.1:44794507-44794526 | None:intergenic | 55.0% | |
| ACCAAGCTCGATTTCCCCCA+GGG | - | chr5.1:44795056-44795075 | None:intergenic | 55.0% | |
| CGATTTCCCCCAGGGGTTAA+AGG | - | chr5.1:44795048-44795067 | None:intergenic | 55.0% | |
| CTCCTTGCATGCGCAAGTGA+AGG | + | chr5.1:44793462-44793481 | MS.gene053795:intron | 55.0% | |
| CTTCACTTGCGCATGCAAGG+AGG | - | chr5.1:44793464-44793483 | None:intergenic | 55.0% | |
| GAACGATCACGGACACTCCT+CGG | + | chr5.1:44794198-44794217 | MS.gene053795:intron | 55.0% | |
| GGACCTAACCTGTGACCTCT+TGG | + | chr5.1:44793823-44793842 | MS.gene053795:intron | 55.0% | |
| TGCAACCAGAAAAGTGGCCC+TGG | - | chr5.1:44795781-44795800 | None:intergenic | 55.0% | |
| TGCCTTCACTTGCGCATGCA+AGG | - | chr5.1:44793467-44793486 | None:intergenic | 55.0% | |
| TGTCAGACACGACACGTGTC+CGG | - | chr5.1:44794242-44794261 | None:intergenic | 55.0% | |
| TTGGGAGGCCTTTAACCCCT+GGG | + | chr5.1:44795037-44795056 | MS.gene053795:CDS | 55.0% | |
| TTTGGGAGGCCTTTAACCCC+TGG | + | chr5.1:44795036-44795055 | MS.gene053795:CDS | 55.0% | |
| ! | AACGGGCTTGAAAGCCATCG+AGG | - | chr5.1:44794580-44794599 | None:intergenic | 55.0% |
| !! | TGTCGGTGTCGGTGTAGTGT+CGG | - | chr5.1:44794265-44794284 | None:intergenic | 55.0% |
| CCAAGCTCGATTTCCCCCAG+GGG | - | chr5.1:44795055-44795074 | None:intergenic | 60.0% | |
| GACCAAGCTCGATTTCCCCC+AGG | - | chr5.1:44795057-44795076 | None:intergenic | 60.0% | |
| GGTGGCATAGGGGGATTGGA+GGG | - | chr5.1:44794498-44794517 | None:intergenic | 60.0% | |
| TGGGAGGCCTTTAACCCCTG+GGG | + | chr5.1:44795038-44795057 | MS.gene053795:CDS | 60.0% | |
| ACACGACACGTGTCCGGCAC+TGG | - | chr5.1:44794236-44794255 | None:intergenic | 65.0% | |
| CACGACACGTGTCCGGCACT+GGG | - | chr5.1:44794235-44794254 | None:intergenic | 65.0% | |
| CCCCTGGGGGAAATCGAGCT+TGG | + | chr5.1:44795052-44795071 | MS.gene053795:CDS | 65.0% | |
| CGGTGGCATAGGGGGATTGG+AGG | - | chr5.1:44794499-44794518 | None:intergenic | 65.0% | |
| GGACGGTGGCATAGGGGGAT+TGG | - | chr5.1:44794502-44794521 | None:intergenic | 65.0% | |
| GGGAGGCCTTTAACCCCTGG+GGG | + | chr5.1:44795039-44795058 | MS.gene053795:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 44793337 | 44796049 | 44793337 | ID=MS.gene053795 |
| chr5.1 | mRNA | 44793337 | 44796049 | 44793337 | ID=MS.gene053795.t1;Parent=MS.gene053795 |
| chr5.1 | exon | 44793337 | 44793439 | 44793337 | ID=MS.gene053795.t1.exon1;Parent=MS.gene053795.t1 |
| chr5.1 | CDS | 44793337 | 44793439 | 44793337 | ID=cds.MS.gene053795.t1;Parent=MS.gene053795.t1 |
| chr5.1 | exon | 44793933 | 44793940 | 44793933 | ID=MS.gene053795.t1.exon2;Parent=MS.gene053795.t1 |
| chr5.1 | CDS | 44793933 | 44793940 | 44793933 | ID=cds.MS.gene053795.t1;Parent=MS.gene053795.t1 |
| chr5.1 | exon | 44794895 | 44795100 | 44794895 | ID=MS.gene053795.t1.exon3;Parent=MS.gene053795.t1 |
| chr5.1 | CDS | 44794895 | 44795100 | 44794895 | ID=cds.MS.gene053795.t1;Parent=MS.gene053795.t1 |
| chr5.1 | exon | 44795782 | 44796049 | 44795782 | ID=MS.gene053795.t1.exon4;Parent=MS.gene053795.t1 |
| chr5.1 | CDS | 44795782 | 44796049 | 44795782 | ID=cds.MS.gene053795.t1;Parent=MS.gene053795.t1 |
| Gene Sequence |
| Protein sequence |
