AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene96694


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96694.t1 MTR_1g106200 95.697 581 24 1 1 580 1 581 0.0 1159
MS.gene96694.t1 MTR_1g106200 90.189 581 23 2 1 580 7 554 0.0 1076
MS.gene96694.t1 MTR_1g106910 75.172 580 144 0 1 580 1 580 0.0 919
MS.gene96694.t1 MTR_1g106790 73.621 580 152 1 1 580 2 580 0.0 901
MS.gene96694.t1 MTR_1g106770 74.312 545 140 0 36 580 2 546 0.0 878
MS.gene96694.t1 MTR_7g024420 50.000 532 262 3 22 553 13 540 0.0 551
MS.gene96694.t1 MTR_4g074070 48.155 542 277 3 12 553 3 540 0.0 539
MS.gene96694.t1 MTR_5g049180 47.664 535 276 3 18 552 9 539 0.0 530
MS.gene96694.t1 MTR_3g117800 36.620 568 318 9 18 578 1 533 9.70e-116 354
MS.gene96694.t1 MTR_3g117800 39.958 478 270 7 108 578 15 482 7.53e-113 345
MS.gene96694.t1 MTR_3g117800 40.674 445 250 5 139 578 17 452 1.90e-109 335
MS.gene96694.t1 MTR_4g121520 54.887 266 67 3 315 580 222 434 1.37e-85 273
MS.gene96694.t1 MTR_3g103610 29.873 472 295 12 44 489 192 653 1.32e-59 211
MS.gene96694.t1 MTR_1g017020 27.641 568 361 15 44 578 353 903 1.46e-56 205
MS.gene96694.t1 MTR_1463s0010 40.310 129 31 4 381 509 1 83 1.11e-16 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96694.t1 AT4G33840 51.292 542 257 5 27 565 21 558 0.0 565
MS.gene96694.t1 AT4G33830 49.074 540 267 6 29 565 24 558 0.0 522
MS.gene96694.t1 AT4G33860 50.379 528 255 5 29 553 23 546 4.34e-180 521
MS.gene96694.t1 AT4G33820 46.207 580 276 8 9 574 6 563 7.98e-177 512
MS.gene96694.t1 AT4G33810 45.833 576 279 8 8 574 11 562 6.51e-169 492
MS.gene96694.t1 AT4G33810 45.833 576 279 8 8 574 11 562 6.51e-169 492
MS.gene96694.t1 AT4G33810 45.833 576 279 8 8 574 11 562 6.51e-169 492
MS.gene96694.t1 AT4G33810 47.514 543 256 7 40 574 1 522 5.01e-167 486
MS.gene96694.t1 AT4G33810 47.514 543 256 7 40 574 1 522 5.01e-167 486
MS.gene96694.t1 AT2G14690 44.946 554 259 10 31 567 32 556 1.07e-161 474
MS.gene96694.t1 AT4G38650 37.225 591 329 11 1 579 1 561 5.17e-126 382
MS.gene96694.t1 AT4G38300 44.015 259 131 4 201 459 10 254 1.57e-71 231
MS.gene96694.t1 AT1G10050 28.862 589 361 16 32 578 523 1095 6.02e-60 216
MS.gene96694.t1 AT1G10050 28.862 589 361 16 32 578 491 1063 1.10e-59 215
MS.gene96694.t1 AT1G10050 28.862 589 361 16 32 578 491 1063 1.10e-59 215
MS.gene96694.t1 AT1G58370 29.661 472 291 12 48 489 366 826 1.14e-58 211
MS.gene96694.t1 AT1G58370 29.661 472 291 12 48 489 394 854 1.62e-58 211
MS.gene96694.t1 AT4G08160 30.162 494 315 15 80 554 245 727 8.70e-57 204
MS.gene96694.t1 AT4G08160 31.754 422 262 12 80 484 245 657 6.50e-56 200

Find 104 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGCAACCATTTACTAAAA+AGG 0.196675 1.1:-76419926 MS.gene96694:CDS
CGCGGCTTTGCGCAATTTAT+CGG 0.228371 1.1:+76419208 None:intergenic
ATAATCCAAGTGTGGAAATA+TGG 0.243112 1.1:-76419963 MS.gene96694:CDS
GTAATATTGGATTTCCAATA+TGG 0.244796 1.1:-76418827 MS.gene96694:CDS
GATAAATACTTAACCCATTC+AGG 0.250247 1.1:+76419233 None:intergenic
TTAGAATTTGCTAAAGATAA+TGG 0.267266 1.1:-76419305 MS.gene96694:CDS
CTGGCTTCTGTGAGCCATAT+TGG 0.278897 1.1:+76418813 None:intergenic
TATCCTCATAAAAGTGAAAA+TGG 0.296065 1.1:+76419111 None:intergenic
CCCTTTCAATGTTGTTGTCT+TGG 0.298203 1.1:+76419890 None:intergenic
GAATTGAATCTGTTGTTAAA+AGG 0.302891 1.1:-76419178 MS.gene96694:CDS
CTTGTCCAGTTGGAGTAGTT+TGG 0.315012 1.1:+76418545 None:intergenic
GCAAATTCTAACATTGCATC+TGG 0.318088 1.1:+76419317 None:intergenic
CTATCTGCTTTGGCTGTATA+AGG 0.325055 1.1:+76418487 None:intergenic
ATAGAGGGTTGGACAGTATC+TGG 0.325119 1.1:-76420782 MS.gene96694:CDS
TTGGCTGGCCACTTGCAAAA+TGG 0.329470 1.1:+76418886 None:intergenic
AGGGCTAGGCGTTCATTCTT+TGG 0.333367 1.1:-76421001 MS.gene96694:CDS
AGGAATCAATATACCTGATT+TGG 0.339675 1.1:+76418777 None:intergenic
ACAAAGGCAGATTTCCCATT+TGG 0.372177 1.1:-76419479 MS.gene96694:CDS
CAAGGGATTATAATGTTTGC+TGG 0.384553 1.1:-76418616 MS.gene96694:CDS
GACCTCATGTAAGCAAGATT+TGG 0.386824 1.1:+76418867 None:intergenic
ATGGCTCACAGAAGCCAGTT+TGG 0.392362 1.1:-76418808 MS.gene96694:CDS
ATCTTGACACAAACCATTCC+TGG 0.399462 1.1:+76419417 None:intergenic
AATTCCTCTACTATCTGCTT+TGG 0.405314 1.1:+76418477 None:intergenic
TATAGTACAGAGAAAATTCC+AGG 0.407018 1.1:-76419359 MS.gene96694:CDS
TCTGTTGTATTTAAAACAAA+TGG 0.411591 1.1:-76420469 MS.gene96694:CDS
GCGGCTTTGCGCAATTTATC+GGG 0.413681 1.1:+76419209 None:intergenic
ATTATAATCCCTTGAACTGC+TGG 0.416207 1.1:+76418625 None:intergenic
TCTTTCCTTCTACTTATCTC+AGG 0.416467 1.1:-76421098 MS.gene96694:intron
GGACAATTTGATTCTTGAAT+GGG 0.428361 1.1:-76418518 MS.gene96694:CDS
AATTTCCAAACTACTCCAAC+TGG 0.432243 1.1:-76418550 MS.gene96694:CDS
GAACCTCAGAGAGCACAATA+TGG 0.433972 1.1:-76420842 MS.gene96694:CDS
CTTGAGGAGATTATGCAATC+TGG 0.434202 1.1:-76418948 MS.gene96694:CDS
TATAATACTATTGAATATAG+TGG 0.435039 1.1:-76419008 MS.gene96694:CDS
TGGACAATTTGATTCTTGAA+TGG 0.435532 1.1:-76418519 MS.gene96694:CDS
AGAAACCTGAGATAAGTAGA+AGG 0.437755 1.1:+76421093 None:intergenic
TACTCTCATCCAGCAGTTCA+AGG 0.446618 1.1:-76418634 MS.gene96694:CDS
TTTGGATCCTCAGCCAAATC+AGG 0.451900 1.1:-76418790 MS.gene96694:intron
TTGATTCTTGAATGGGGAAG+TGG 0.457488 1.1:-76418511 MS.gene96694:CDS
TAATCCAAGTGTGGAAATAT+GGG 0.461783 1.1:-76419962 MS.gene96694:CDS
TTTCATTTGCATTACTTACA+TGG 0.462597 1.1:+76419537 None:intergenic
TGAATTTAAGTGTCAGGAAA+GGG 0.466143 1.1:-76418381 MS.gene96694:CDS
ATTTGGCTGAGGATCCAAAC+TGG 0.478667 1.1:+76418794 None:intergenic
GCAGATTTCCCATTTGGATG+TGG 0.480363 1.1:-76419473 MS.gene96694:CDS
TGGTTCATCCCACATCCAAA+TGG 0.480525 1.1:+76419464 None:intergenic
CAAACGGTTCAGCTAGAGAA+AGG 0.482100 1.1:-76420671 MS.gene96694:CDS
CAGATTTCCCATTTGGATGT+GGG 0.482548 1.1:-76419472 MS.gene96694:CDS
TCAGCCCATATTTCCACACT+TGG 0.484189 1.1:+76419958 None:intergenic
ATTGAGGAACGTATATCAAA+TGG 0.491052 1.1:-76420749 MS.gene96694:CDS
GGTTGGACAGTATCTGGAAA+TGG 0.499106 1.1:-76420776 MS.gene96694:CDS
ACCAAGACAACAACATTGAA+AGG 0.500494 1.1:-76419891 MS.gene96694:CDS
TACTCCAACTGGACAAGTTG+TGG 0.508753 1.1:-76418539 MS.gene96694:CDS
ACCTCGAAAAGAATCTCAGC+CGG 0.511024 1.1:+76420358 None:intergenic
CTGTTGAAACCAGCTTGTGC+TGG 0.513392 1.1:+76418592 None:intergenic
TTGAATTTAAGTGTCAGGAA+AGG 0.514898 1.1:-76418382 MS.gene96694:CDS
AATCTTGCTTACATGAGGTC+AGG 0.523790 1.1:-76418864 MS.gene96694:CDS
GGTTCATCCCACATCCAAAT+GGG 0.524124 1.1:+76419465 None:intergenic
AAAATGGCCTTGCAATCCTA+TGG 0.528513 1.1:+76418902 None:intergenic
GTAGATATTTCATTACATCA+TGG 0.536564 1.1:-76418454 MS.gene96694:CDS
TTTGCTGGTCCAGCACAAGC+TGG 0.541008 1.1:-76418601 MS.gene96694:CDS
AGGATTTGATCACAACATAG+AGG 0.543988 1.1:-76420798 MS.gene96694:CDS
ACTGAAATGTTATTTGCCAT+AGG 0.544070 1.1:-76418918 MS.gene96694:CDS
ATCTGGAAATGGAACAATTG+AGG 0.546320 1.1:-76420765 MS.gene96694:CDS
CCAAGACAACAACATTGAAA+GGG 0.549553 1.1:-76419890 MS.gene96694:intron
CCTCGAAAAGAATCTCAGCC+GGG 0.555600 1.1:+76420359 None:intergenic
TTATTTGCCATAGGATTGCA+AGG 0.558146 1.1:-76418909 MS.gene96694:CDS
CCCAGAAAATGTTATGACCT+CGG 0.560200 1.1:+76419273 None:intergenic
CAAACATTGACTACCAGGAA+TGG 0.563798 1.1:-76419430 MS.gene96694:CDS
TGAGATAAGTAGAAGGAAAG+AGG 0.565953 1.1:+76421100 None:intergenic
TGATTCTTGAATGGGGAAGT+GGG 0.567685 1.1:-76418510 MS.gene96694:CDS
TTGATCACAACATAGAGGGT+TGG 0.568919 1.1:-76420793 MS.gene96694:CDS
TCATGTAAGCAAGATTTGGC+TGG 0.570296 1.1:+76418871 None:intergenic
ACAAAGGAGAATTGATAGCA+TGG 0.571786 1.1:-76419154 MS.gene96694:CDS
CTTTCACTAATGAGATGAAG+TGG 0.573436 1.1:-76419382 MS.gene96694:CDS
CAATATACCTGATTTGGCTG+AGG 0.579698 1.1:+76418783 None:intergenic
CAAATTCTAACATTGCATCT+GGG 0.582016 1.1:+76419318 None:intergenic
AGTTGCAAACTTCTCGAGCC+CGG 0.584837 1.1:-76420377 MS.gene96694:CDS
TTGTCCACAACTTGTCCAGT+TGG 0.589012 1.1:+76418535 None:intergenic
CAATGTTTGTGAGAATATGA+TGG 0.591061 1.1:+76419444 None:intergenic
GGATTTGATCACAACATAGA+GGG 0.591949 1.1:-76420797 MS.gene96694:CDS
TCTGTTGTTAAAAGGTACAA+AGG 0.592676 1.1:-76419170 MS.gene96694:CDS
GCTTGGCTTCAGTTGAGTGA+AGG 0.592889 1.1:-76420505 MS.gene96694:CDS
CCTCCATATTGTGCTCTCTG+AGG 0.597382 1.1:+76420839 None:intergenic
TCTCACAAACATTGACTACC+AGG 0.597515 1.1:-76419435 MS.gene96694:CDS
GATAATGGAATTTCTGTCCG+AGG 0.602235 1.1:-76419290 MS.gene96694:CDS
CAAAGGAGAATTGATAGCAT+GGG 0.602744 1.1:-76419153 MS.gene96694:CDS
TAATGCAAATGAAACAGCAT+CGG 0.605090 1.1:-76419528 MS.gene96694:CDS
CAGAGAGCACAATATGGAGG+AGG 0.606885 1.1:-76420836 MS.gene96694:CDS
GATAAGTAGAAGGAAAGAGG+TGG 0.610537 1.1:+76421103 None:intergenic
ACTCTCATCCAGCAGTTCAA+GGG 0.613025 1.1:-76418633 MS.gene96694:CDS
ATCCATGCTTTGCTATCACA+TGG 0.619431 1.1:+76420425 None:intergenic
GCAGGCAGAGTACTTTGAAG+AGG 0.621359 1.1:-76418671 MS.gene96694:intron
AGTTGTGATAACACAAACAA+AGG 0.625979 1.1:-76419495 MS.gene96694:CDS
AGCCAAATCTTGCTTACATG+AGG 0.629685 1.1:-76418869 MS.gene96694:CDS
GCAAATGAAACAGCATCGGA+AGG 0.632167 1.1:-76419524 MS.gene96694:CDS
GGAGGCATTATAGTAAACTC+AGG 0.632520 1.1:-76420818 MS.gene96694:CDS
GACAATTTGATTCTTGAATG+GGG 0.637575 1.1:-76418517 MS.gene96694:CDS
GGCCATGTGATAGCAAAGCA+TGG 0.645129 1.1:-76420427 MS.gene96694:CDS
ACAGCCAAAGCAGATAGTAG+AGG 0.647030 1.1:-76418481 MS.gene96694:CDS
GAGGAACGTATATCAAATGG+TGG 0.659694 1.1:-76420746 MS.gene96694:CDS
GCAGAGCAATAATCCAAGTG+TGG 0.666015 1.1:-76419971 MS.gene96694:intron
TGATAGCAAAGCATGGATGT+TGG 0.670562 1.1:-76420420 MS.gene96694:CDS
CCTCAGAGAGCACAATATGG+AGG 0.677720 1.1:-76420839 MS.gene96694:CDS
AATGGAAGTGAACTTGTGCA+TGG 0.692631 1.1:-76420451 MS.gene96694:CDS
GGAAGTGAACTTGTGCATGG+TGG 0.735930 1.1:-76420448 MS.gene96694:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTTGTTACAATTTTTT+TGG + chr1.1:76419840-76419859 None:intergenic 10.0%
!! AAGAAATACTAAAATTAGAA+CGG - chr1.1:76419727-76419746 MS.gene96694:intron 15.0%
!! TATAATACTATTGAATATAG+TGG - chr1.1:76420477-76420496 MS.gene96694:CDS 15.0%
!! TGTTATGTAACAAAAAAATT+TGG - chr1.1:76419465-76419484 MS.gene96694:CDS 15.0%
!!! AAAATTTTACATGTACTTTT+TGG - chr1.1:76419382-76419401 MS.gene96694:CDS 15.0%
!!! ATTTCTTTTGAGTATAAAAT+TGG + chr1.1:76419714-76419733 None:intergenic 15.0%
!! AAAAATTGAATTTAAGTGTC+AGG - chr1.1:76421098-76421117 MS.gene96694:intron 20.0%
!! ATTTATAGGGACTAAATATA+GGG - chr1.1:76419241-76419260 MS.gene96694:CDS 20.0%
!!! AATTCAATTTTTTGGAGTAA+TGG + chr1.1:76421090-76421109 None:intergenic 20.0%
!!! AGTCCTTATTTTTCATTTAT+AGG - chr1.1:76419227-76419246 MS.gene96694:CDS 20.0%
!!! ATTAGATAGTTTTTCACAAA+CGG - chr1.1:76418798-76418817 MS.gene96694:CDS 20.0%
!!! GACACTTAAATTCAATTTTT+TGG + chr1.1:76421098-76421117 None:intergenic 20.0%
!!! GGCATAAATATATTTTCAAT+CGG + chr1.1:76419323-76419342 None:intergenic 20.0%
!!! GTCCTTATTTTTCATTTATA+GGG - chr1.1:76419228-76419247 MS.gene96694:CDS 20.0%
!!! TCTGTTGTATTTAAAACAAA+TGG - chr1.1:76419016-76419035 MS.gene96694:CDS 20.0%
!!! TTAGAATTTGCTAAAGATAA+TGG - chr1.1:76420180-76420199 MS.gene96694:intron 20.0%
!!! TTCATAAACAATGTTGTTTT+TGG + chr1.1:76420453-76420472 None:intergenic 20.0%
! AACCATTTACTAAAAAGGAA+TGG - chr1.1:76419564-76419583 MS.gene96694:intron 25.0%
! ATAAGAATTCAGAAACAACA+AGG + chr1.1:76419432-76419451 None:intergenic 25.0%
! ATGAAAAATATCAACCTGAA+TGG - chr1.1:76420238-76420257 MS.gene96694:intron 25.0%
! CATTTATAGGGACTAAATAT+AGG - chr1.1:76419240-76419259 MS.gene96694:CDS 25.0%
! GAATTGAATCTGTTGTTAAA+AGG - chr1.1:76420307-76420326 MS.gene96694:intron 25.0%
! GTAATATTGGATTTCCAATA+TGG - chr1.1:76420658-76420677 MS.gene96694:CDS 25.0%
! GTAGATATTTCATTACATCA+TGG - chr1.1:76421031-76421050 MS.gene96694:intron 25.0%
! GTCCCTATAAATGAAAAATA+AGG + chr1.1:76419233-76419252 None:intergenic 25.0%
! TATCCTCATAAAAGTGAAAA+TGG + chr1.1:76420377-76420396 None:intergenic 25.0%
! TGAAAAATATCAACCTGAAT+GGG - chr1.1:76420239-76420258 MS.gene96694:intron 25.0%
! TTTCATTTGCATTACTTACA+TGG + chr1.1:76419951-76419970 None:intergenic 25.0%
!! AGTCTTGATTTATAACTTGT+AGG - chr1.1:76419903-76419922 MS.gene96694:CDS 25.0%
!! TCCTTTTTACAAATCAATAC+TGG + chr1.1:76419874-76419893 None:intergenic 25.0%
!!! ACCAGTATTGATTTGTAAAA+AGG - chr1.1:76419870-76419889 MS.gene96694:intron 25.0%
!!! AGATTCAATTCTTTTTTTCG+CGG + chr1.1:76420298-76420317 None:intergenic 25.0%
!!! CTAGATTTTCTTGGTAATAT+TGG - chr1.1:76420645-76420664 MS.gene96694:intron 25.0%
!!! TAAAATTGGTTTGCTTACTA+TGG + chr1.1:76419700-76419719 None:intergenic 25.0%
!!! TCAAGTTTTTTGAGATAGTT+GGG + chr1.1:76420522-76420541 None:intergenic 25.0%
!!! TCATACACTGTTTTATTTCA+AGG + chr1.1:76418621-76418640 None:intergenic 25.0%
!!! TGATTATTTTGCTACTATTG+AGG - chr1.1:76418511-76418530 MS.gene96694:CDS 25.0%
AGGAATCAATATACCTGATT+TGG + chr1.1:76420711-76420730 None:intergenic 30.0%
AGTTGTGATAACACAAACAA+AGG - chr1.1:76419990-76420009 MS.gene96694:intron 30.0%
ATAATCCAAGTGTGGAAATA+TGG - chr1.1:76419522-76419541 MS.gene96694:CDS 30.0%
ATCTTCACAACATATATGCA+GGG - chr1.1:76418465-76418484 MS.gene96694:CDS 30.0%
ATTGAGGAACGTATATCAAA+TGG - chr1.1:76418736-76418755 MS.gene96694:intron 30.0%
CAAATTCTAACATTGCATCT+GGG + chr1.1:76420170-76420189 None:intergenic 30.0%
CAACTATCTCAAAAAACTTG+AGG - chr1.1:76420521-76420540 MS.gene96694:intron 30.0%
CAATGTTTGTGAGAATATGA+TGG + chr1.1:76420044-76420063 None:intergenic 30.0%
CATACTTCGTACAAATAACA+TGG - chr1.1:76419811-76419830 MS.gene96694:intron 30.0%
CTTGCAACCATTTACTAAAA+AGG - chr1.1:76419559-76419578 MS.gene96694:CDS 30.0%
GACAATTTGATTCTTGAATG+GGG - chr1.1:76420968-76420987 MS.gene96694:intron 30.0%
GATAAATACTTAACCCATTC+AGG + chr1.1:76420255-76420274 None:intergenic 30.0%
GGACAATTTGATTCTTGAAT+GGG - chr1.1:76420967-76420986 MS.gene96694:intron 30.0%
TAATCCAAGTGTGGAAATAT+GGG - chr1.1:76419523-76419542 MS.gene96694:CDS 30.0%
TAATGCAAATGAAACAGCAT+CGG - chr1.1:76419957-76419976 MS.gene96694:CDS 30.0%
TATAGTACAGAGAAAATTCC+AGG - chr1.1:76420126-76420145 MS.gene96694:intron 30.0%
TATCTTCACAACATATATGC+AGG - chr1.1:76418464-76418483 MS.gene96694:CDS 30.0%
TCTTGCTTCTATAAAAGAGA+AGG + chr1.1:76419344-76419363 None:intergenic 30.0%
TGAATTTAAGTGTCAGGAAA+GGG - chr1.1:76421104-76421123 MS.gene96694:CDS 30.0%
TGGACAATTTGATTCTTGAA+TGG - chr1.1:76420966-76420985 MS.gene96694:intron 30.0%
TTGAATTTAAGTGTCAGGAA+AGG - chr1.1:76421103-76421122 MS.gene96694:CDS 30.0%
TTTGTAATACTACCAACTTG+AGG - chr1.1:76419666-76419685 MS.gene96694:intron 30.0%
! ACTGAAATGTTATTTGCCAT+AGG - chr1.1:76420567-76420586 MS.gene96694:intron 30.0%
! CACTTTTATGAGGATAAACT+AGG - chr1.1:76420381-76420400 MS.gene96694:CDS 30.0%
! CGGCTTAAAATTACATGTTT+TGG + chr1.1:76419303-76419322 None:intergenic 30.0%
! TAATGATTGTGTTCTTTTGC+TGG + chr1.1:76418782-76418801 None:intergenic 30.0%
! TCTGTTGTTAAAAGGTACAA+AGG - chr1.1:76420315-76420334 MS.gene96694:intron 30.0%
!! CTCCATTCCTTTTTAGTAAA+TGG + chr1.1:76419569-76419588 None:intergenic 30.0%
!! CTTTTTAGTAAATGGTTGCA+AGG + chr1.1:76419561-76419580 None:intergenic 30.0%
!! GTGATTCTTATTTGTTATGC+AGG - chr1.1:76420796-76420815 MS.gene96694:CDS 30.0%
!! TGTCCATTTTCACTTTTATG+AGG - chr1.1:76420371-76420390 MS.gene96694:CDS 30.0%
!! TTTTATTTCCACATTCAGCT+TGG - chr1.1:76418963-76418982 MS.gene96694:CDS 30.0%
!!! ACTGTTTTATTTCAAGGCAT+TGG + chr1.1:76418615-76418634 None:intergenic 30.0%
!!! CTCAAGTTTTTTGAGATAGT+TGG + chr1.1:76420523-76420542 None:intergenic 30.0%
!!! GGATTGATATACACTTTTTC+AGG - chr1.1:76418835-76418854 MS.gene96694:CDS 30.0%
!!! TTTTTGGAGTAATGGTTTGA+AGG + chr1.1:76421082-76421101 None:intergenic 30.0%
AATTCCTCTACTATCTGCTT+TGG + chr1.1:76421011-76421030 None:intergenic 35.0%
AATTTCCAAACTACTCCAAC+TGG - chr1.1:76420935-76420954 MS.gene96694:intron 35.0%
ACCAAGACAACAACATTGAA+AGG - chr1.1:76419594-76419613 MS.gene96694:intron 35.0%
AGAAACCTGAGATAAGTAGA+AGG + chr1.1:76418395-76418414 None:intergenic 35.0%
AGGATTTGATCACAACATAG+AGG - chr1.1:76418687-76418706 MS.gene96694:intron 35.0%
ATCTGGAAATGGAACAATTG+AGG - chr1.1:76418720-76418739 MS.gene96694:intron 35.0%
ATTATAATCCCTTGAACTGC+TGG + chr1.1:76420863-76420882 None:intergenic 35.0%
CAAGGGATTATAATGTTTGC+TGG - chr1.1:76420869-76420888 MS.gene96694:intron 35.0%
CCAAGACAACAACATTGAAA+GGG - chr1.1:76419595-76419614 MS.gene96694:intron 35.0%
CTTTCACTAATGAGATGAAG+TGG - chr1.1:76420103-76420122 MS.gene96694:intron 35.0%
GCAAATTCTAACATTGCATC+TGG + chr1.1:76420171-76420190 None:intergenic 35.0%
GGATTTGATCACAACATAGA+GGG - chr1.1:76418688-76418707 MS.gene96694:intron 35.0%
TAGAACGGATAATAAAGACG+TGG - chr1.1:76419742-76419761 MS.gene96694:intron 35.0%
TCTTTCCTTCTACTTATCTC+AGG - chr1.1:76418387-76418406 MS.gene96694:CDS 35.0%
TGAGATAAGTAGAAGGAAAG+AGG + chr1.1:76418388-76418407 None:intergenic 35.0%
TTATTTGCCATAGGATTGCA+AGG - chr1.1:76420576-76420595 MS.gene96694:intron 35.0%
TTGTCGATGCATAAGTTTAG+TGG + chr1.1:76419783-76419802 None:intergenic 35.0%
! ACAAAGGAGAATTGATAGCA+TGG - chr1.1:76420331-76420350 MS.gene96694:intron 35.0%
! ACCTTGTACTTTTCCTGAAT+CGG - chr1.1:76419405-76419424 MS.gene96694:CDS 35.0%
! ATGGATTTTGTTCCTCAAGT+TGG + chr1.1:76419681-76419700 None:intergenic 35.0%
! CAAAGGAGAATTGATAGCAT+GGG - chr1.1:76420332-76420351 MS.gene96694:intron 35.0%
! GTAGCACTGAATTATAGAGA+GGG + chr1.1:76418424-76418443 None:intergenic 35.0%
! TGTAGCACTGAATTATAGAG+AGG + chr1.1:76418425-76418444 None:intergenic 35.0%
!! GAGATTCTTTTCGAGGTTAA+CGG - chr1.1:76419133-76419152 MS.gene96694:CDS 35.0%
!! GGATGTTGGTCTCTTTTAAA+AGG - chr1.1:76419079-76419098 MS.gene96694:CDS 35.0%
!! TCATTTTACGTTTGAAGTCG+AGG + chr1.1:76420731-76420750 None:intergenic 35.0%
!! TGTTGGTCTCTTTTAAAAGG+CGG - chr1.1:76419082-76419101 MS.gene96694:CDS 35.0%
!!! AGTTTTTTGAGATAGTTGGG+TGG + chr1.1:76420519-76420538 None:intergenic 35.0%
!!! GTTTTTTGAGATAGTTGGGT+GGG + chr1.1:76420518-76420537 None:intergenic 35.0%
AATCTTGCTTACATGAGGTC+AGG - chr1.1:76420621-76420640 MS.gene96694:intron 40.0%
AATGGAAGTGAACTTGTGCA+TGG - chr1.1:76419034-76419053 MS.gene96694:CDS 40.0%
ACAAAGGCAGATTTCCCATT+TGG - chr1.1:76420006-76420025 MS.gene96694:intron 40.0%
ACGGATAATAAAGACGTGGT+TGG - chr1.1:76419746-76419765 MS.gene96694:intron 40.0%
AGCCAAATCTTGCTTACATG+AGG - chr1.1:76420616-76420635 MS.gene96694:intron 40.0%
ATCTTGACACAAACCATTCC+TGG + chr1.1:76420071-76420090 None:intergenic 40.0%
CAGATTTCCCATTTGGATGT+GGG - chr1.1:76420013-76420032 MS.gene96694:intron 40.0%
CCCAGAAAATGTTATGACCT+CGG + chr1.1:76420215-76420234 None:intergenic 40.0%
CCCTTTCAATGTTGTTGTCT+TGG + chr1.1:76419598-76419617 None:intergenic 40.0%
CGGATAATAAAGACGTGGTT+GGG - chr1.1:76419747-76419766 MS.gene96694:intron 40.0%
CTATCTGCTTTGGCTGTATA+AGG + chr1.1:76421001-76421020 None:intergenic 40.0%
CTTGAGGAGATTATGCAATC+TGG - chr1.1:76420537-76420556 MS.gene96694:intron 40.0%
GACCTCATGTAAGCAAGATT+TGG + chr1.1:76420621-76420640 None:intergenic 40.0%
GAGGAACGTATATCAAATGG+TGG - chr1.1:76418739-76418758 MS.gene96694:intron 40.0%
GATAAGTAGAAGGAAAGAGG+TGG + chr1.1:76418385-76418404 None:intergenic 40.0%
TCATGTAAGCAAGATTTGGC+TGG + chr1.1:76420617-76420636 None:intergenic 40.0%
TGATAGCAAAGCATGGATGT+TGG - chr1.1:76419065-76419084 MS.gene96694:CDS 40.0%
TGATTCTTGAATGGGGAAGT+GGG - chr1.1:76420975-76420994 MS.gene96694:CDS 40.0%
TTGATCACAACATAGAGGGT+TGG - chr1.1:76418692-76418711 MS.gene96694:intron 40.0%
TTGATTCTTGAATGGGGAAG+TGG - chr1.1:76420974-76420993 MS.gene96694:intron 40.0%
! AAAATGGCCTTGCAATCCTA+TGG + chr1.1:76420586-76420605 None:intergenic 40.0%
! ACCGATTCAGGAAAAGTACA+AGG + chr1.1:76419409-76419428 None:intergenic 40.0%
! AGGTCAGGTCTAGATTTTCT+TGG - chr1.1:76420636-76420655 MS.gene96694:intron 40.0%
! ATAGTGTAGTTTTCTTGGCC+TGG + chr1.1:76420147-76420166 None:intergenic 40.0%
! ATCCATGCTTTGCTATCACA+TGG + chr1.1:76419063-76419082 None:intergenic 40.0%
! ATGTTTTCGCAGTTACACGA+AGG - chr1.1:76420760-76420779 MS.gene96694:CDS 40.0%
! CAAACATTGACTACCAGGAA+TGG - chr1.1:76420055-76420074 MS.gene96694:intron 40.0%
! CCGAGGTCATAACATTTTCT+GGG - chr1.1:76420212-76420231 MS.gene96694:intron 40.0%
! CTGGGATAGTGTAGTTTTCT+TGG + chr1.1:76420152-76420171 None:intergenic 40.0%
! TCCGAGGTCATAACATTTTC+TGG - chr1.1:76420211-76420230 MS.gene96694:intron 40.0%
! TCTCACAAACATTGACTACC+AGG - chr1.1:76420050-76420069 MS.gene96694:intron 40.0%
!! CAATATACCTGATTTGGCTG+AGG + chr1.1:76420705-76420724 None:intergenic 40.0%
!! GATAATGGAATTTCTGTCCG+AGG - chr1.1:76420195-76420214 MS.gene96694:intron 40.0%
!! GGAGGCATTATAGTAAACTC+AGG - chr1.1:76418667-76418686 MS.gene96694:CDS 40.0%
AACTGAAGCCAAGCTGAATG+TGG + chr1.1:76418974-76418993 None:intergenic 45.0%
AATAAAGACGTGGTTGGGAG+TGG - chr1.1:76419752-76419771 MS.gene96694:intron 45.0%
ACAGCCAAAGCAGATAGTAG+AGG - chr1.1:76421004-76421023 MS.gene96694:intron 45.0%
ACCTCGAAAAGAATCTCAGC+CGG + chr1.1:76419130-76419149 None:intergenic 45.0%
ACTCTCATCCAGCAGTTCAA+GGG - chr1.1:76420852-76420871 MS.gene96694:CDS 45.0%
ATAGAGGGTTGGACAGTATC+TGG - chr1.1:76418703-76418722 MS.gene96694:intron 45.0%
ATTTGGCTGAGGATCCAAAC+TGG + chr1.1:76420694-76420713 None:intergenic 45.0%
CAAACGGTTCAGCTAGAGAA+AGG - chr1.1:76418814-76418833 MS.gene96694:CDS 45.0%
CACAACATATATGCAGGGCT+AGG - chr1.1:76418470-76418489 MS.gene96694:CDS 45.0%
CTTGTCCAGTTGGAGTAGTT+TGG + chr1.1:76420943-76420962 None:intergenic 45.0%
GCAGAGCAATAATCCAAGTG+TGG - chr1.1:76419514-76419533 MS.gene96694:CDS 45.0%
GCAGATTTCCCATTTGGATG+TGG - chr1.1:76420012-76420031 MS.gene96694:intron 45.0%
GGTTCATCCCACATCCAAAT+GGG + chr1.1:76420023-76420042 None:intergenic 45.0%
GGTTGGACAGTATCTGGAAA+TGG - chr1.1:76418709-76418728 MS.gene96694:intron 45.0%
TACTCCAACTGGACAAGTTG+TGG - chr1.1:76420946-76420965 MS.gene96694:intron 45.0%
TACTCTCATCCAGCAGTTCA+AGG - chr1.1:76420851-76420870 MS.gene96694:CDS 45.0%
TCAGCCCATATTTCCACACT+TGG + chr1.1:76419530-76419549 None:intergenic 45.0%
TGGTTCATCCCACATCCAAA+TGG + chr1.1:76420024-76420043 None:intergenic 45.0%
TTGTCCACAACTTGTCCAGT+TGG + chr1.1:76420953-76420972 None:intergenic 45.0%
TTTGGATCCTCAGCCAAATC+AGG - chr1.1:76420695-76420714 MS.gene96694:CDS 45.0%
! GAAACAACAAGGACCGATTC+AGG + chr1.1:76419421-76419440 None:intergenic 45.0%
! GAACCTCAGAGAGCACAATA+TGG - chr1.1:76418643-76418662 MS.gene96694:CDS 45.0%
! GCAAATGAAACAGCATCGGA+AGG - chr1.1:76419961-76419980 MS.gene96694:CDS 45.0%
! TGTCAGGAAAGGGTTTTCAC+AGG - chr1.1:76421114-76421133 MS.gene96694:CDS 45.0%
!! TTGCAAGGCCATTTTGCAAG+TGG - chr1.1:76420591-76420610 MS.gene96694:intron 45.0%
!! TTATGATTATTAATTTAATA+TGG - chr1.1:76418551-76418570 MS.gene96694:CDS 5.0%
AGGGCTAGGCGTTCATTCTT+TGG - chr1.1:76418484-76418503 MS.gene96694:CDS 50.0%
AGTTGCAAACTTCTCGAGCC+CGG - chr1.1:76419108-76419127 MS.gene96694:CDS 50.0%
ATGGCTCACAGAAGCCAGTT+TGG - chr1.1:76420677-76420696 MS.gene96694:CDS 50.0%
CCTCCATATTGTGCTCTCTG+AGG + chr1.1:76418649-76418668 None:intergenic 50.0%
CCTCGAAAAGAATCTCAGCC+GGG + chr1.1:76419129-76419148 None:intergenic 50.0%
CGCGGCTTTGCGCAATTTAT+CGG + chr1.1:76420280-76420299 None:intergenic 50.0%
CTGGCTTCTGTGAGCCATAT+TGG + chr1.1:76420675-76420694 None:intergenic 50.0%
CTGTTGAAACCAGCTTGTGC+TGG + chr1.1:76420896-76420915 None:intergenic 50.0%
GCGGCTTTGCGCAATTTATC+GGG + chr1.1:76420279-76420298 None:intergenic 50.0%
GCTTGGCTTCAGTTGAGTGA+AGG - chr1.1:76418980-76418999 MS.gene96694:CDS 50.0%
GGAAGTGAACTTGTGCATGG+TGG - chr1.1:76419037-76419056 MS.gene96694:CDS 50.0%
GGCCATGTGATAGCAAAGCA+TGG - chr1.1:76419058-76419077 MS.gene96694:CDS 50.0%
! CAGAGAGCACAATATGGAGG+AGG - chr1.1:76418649-76418668 MS.gene96694:CDS 50.0%
! CCTCAGAGAGCACAATATGG+AGG - chr1.1:76418646-76418665 MS.gene96694:CDS 50.0%
! GCAGGCAGAGTACTTTGAAG+AGG - chr1.1:76420814-76420833 MS.gene96694:CDS 50.0%
! TTGGCTGGCCACTTGCAAAA+TGG + chr1.1:76420602-76420621 None:intergenic 50.0%
!! CAAGGCATTGGCAACACAAG+TGG + chr1.1:76418603-76418622 None:intergenic 50.0%
TTTGCTGGTCCAGCACAAGC+TGG - chr1.1:76420884-76420903 MS.gene96694:intron 55.0%
! CCCGGCTGAGATTCTTTTCG+AGG - chr1.1:76419126-76419145 MS.gene96694:CDS 55.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 76418342 76421165 76418342 ID=MS.gene96694
chr1.1 mRNA 76418342 76421165 76418342 ID=MS.gene96694.t1;Parent=MS.gene96694
chr1.1 exon 76421099 76421165 76421099 ID=MS.gene96694.t1.exon1;Parent=MS.gene96694.t1
chr1.1 CDS 76421099 76421165 76421099 ID=cds.MS.gene96694.t1;Parent=MS.gene96694.t1
chr1.1 exon 76420975 76421021 76420975 ID=MS.gene96694.t1.exon2;Parent=MS.gene96694.t1
chr1.1 CDS 76420975 76421021 76420975 ID=cds.MS.gene96694.t1;Parent=MS.gene96694.t1
chr1.1 exon 76420651 76420873 76420651 ID=MS.gene96694.t1.exon3;Parent=MS.gene96694.t1
chr1.1 CDS 76420651 76420873 76420651 ID=cds.MS.gene96694.t1;Parent=MS.gene96694.t1
chr1.1 exon 76420360 76420526 76420360 ID=MS.gene96694.t1.exon4;Parent=MS.gene96694.t1
chr1.1 CDS 76420360 76420526 76420360 ID=cds.MS.gene96694.t1;Parent=MS.gene96694.t1
chr1.1 exon 76419891 76419989 76419891 ID=MS.gene96694.t1.exon5;Parent=MS.gene96694.t1
chr1.1 CDS 76419891 76419989 76419891 ID=cds.MS.gene96694.t1;Parent=MS.gene96694.t1
chr1.1 exon 76418791 76419582 76418791 ID=MS.gene96694.t1.exon6;Parent=MS.gene96694.t1
chr1.1 CDS 76418791 76419582 76418791 ID=cds.MS.gene96694.t1;Parent=MS.gene96694.t1
chr1.1 exon 76418342 76418689 76418342 ID=MS.gene96694.t1.exon7;Parent=MS.gene96694.t1
chr1.1 CDS 76418342 76418689 76418342 ID=cds.MS.gene96694.t1;Parent=MS.gene96694.t1
Gene Sequence

>MS.gene96694

ATGAAGGTTTCTGCAAAATGTTGCAATTTGTTGTTCATCACCACCTCTTTCCTTCTACTTATCTCAGGTTTCTATCTCTCCCTCTCTATAATTCAGTGCTACAATTCTTTTAATTTCTAACATATCTTCACAACATATATGCAGGGCTAGGCGTTCATTCTTTGGATTATGATTATTTTGCTACTATTGAGGCAATGACACGTCTTTTATTATGATTATTAATTTAATATGGCTTATGATTATGTTACAAACTTTAATCCACTTGTGTTGCCAATGCCTTGAAATAAAACAGTGTATGAAAGAACCTCAGAGAGCACAATATGGAGGAGGCATTATAGTAAACTCAGGATTTGATCACAACATAGAGGGTTGGACAGTATCTGGAAATGGAACAATTGAGGAACGTATATCAAATGGTGGAAATAGATTCATTGTTGCCAGCAAAAGAACACAATCATTAGATAGTTTTTCACAAACGGTTCAGCTAGAGAAAGGATTGATATACACTTTTTCAGGTAACTAACGTATGTTTCTCTGTCACTAACATTCATCAAATGAATGTAAATTATCATATCATATTGATCATTAATTCATTTCTTTTCTAAAACATATTTTGATTGATTTTATTTCCACATTCAGCTTGGCTTCAGTTGAGTGAAGGAAGTGACACAGTTTCTGTTGTATTTAAAACAAATGGAAGTGAACTTGTGCATGGTGGCCATGTGATAGCAAAGCATGGATGTTGGTCTCTTTTAAAAGGCGGCATAGTTGCAAACTTCTCGAGCCCGGCTGAGATTCTTTTCGAGGTTAACGGCATTCTTCTTTGAGTTAAATATGTTTTTAGCTTTATGAATTTAGTCTCTATACAAATTTTTATTCAATTCTAGTCCTTATTTTTCATTTATAGGGACTAAATATAGGGAGACTAAAATTGAATAAATTTTTTGTAGACTTAATACCAAAACATGTAATTTTAAGCCGATTGAAAATATATTTATGCCTTCTCTTTTATAGAAGCAAGAAAAGAAAGTTCTTATCTAAAAATTTTACATGTACTTTTTGGACCTTGTACTTTTCCTGAATCGGTCCTTGTTGTTTCTGAATTCTTATCTAAAATGAAATCTGTTATGTAACAAAAAAATTTGGTAAATGAAATTGACTAAGAATGCATTGCAGAGCAATAATCCAAGTGTGGAAATATGGGCTGATAGTGTGTCCTTGCAACCATTTACTAAAAAGGAATGGAGATCACACCAAGACAACAACATTGAAAGGGTAAGCTAATGCAACACGAAACTTGCATTATTCTTCTATGCTTACTATCTTTGTAATACTACCAACTTGAGGAACAAAATCCATAGTAAGCAAACCAATTTTATACTCAAAAGAAATACTAAAATTAGAACGGATAATAAAGACGTGGTTGGGAGTGGAAACTCCACTAAACTTATGCATCGACAAAATTTATGCATACTTCGTACAAATAACATGGTTACCAAAAAAATTGTAACAAAATATAAGAATAGTAACCAGTATTGATTTGTAAAAAGGAAGAGTAACTAGTCTTGATTTATAACTTGTAGGTACGTAAGAGTAGAGTGAGATTCCATGTAAGTAATGCAAATGAAACAGCATCGGAAGGAGCAACAGTTGTGATAACACAAACAAAGGCAGATTTCCCATTTGGATGTGGGATGAACCATCATATTCTCACAAACATTGACTACCAGGAATGGTTTGTGTCAAGATTCAAGTACACAACTTTCACTAATGAGATGAAGTGGTATAGTACAGAGAAAATTCCAGGCCAAGAAAACTACACTATCCCAGATGCAATGTTAGAATTTGCTAAAGATAATGGAATTTCTGTCCGAGGTCATAACATTTTCTGGGACGATGAAAAATATCAACCTGAATGGGTTAAGTATTTATCGCCCGATAAATTGCGCAAAGCCGCGAAAAAAAGAATTGAATCTGTTGTTAAAAGGTACAAAGGAGAATTGATAGCATGGGATGTAGTGAATGAAAATGTCCATTTTCACTTTTATGAGGATAAACTAGGTGAAAATGCATCTGAATTATACTATTTAAAAGCTCATGAGCTTGATCCAAAAACAACATTGTTTATGAATGAGTATAATACTATTGAATATAGTGGAGATAAAGTTGTTAGCCCACCCAACTATCTCAAAAAACTTGAGGAGATTATGCAATCTGGAGAAGCTACTGAAATGTTATTTGCCATAGGATTGCAAGGCCATTTTGCAAGTGGCCAGCCAAATCTTGCTTACATGAGGTCAGGTCTAGATTTTCTTGGTAATATTGGATTTCCAATATGGCTCACAGAAGCCAGTTTGGATCCTCAGCCAAATCAGGTATATTGATTCCTCGACTTCAAACGTAAAATGAAAATAGAAAATGTTTTCGCAGTTACACGAAGGAAGTAGAAAATGTGTGATTCTTATTTGTTATGCAGGCAGAGTACTTTGAAGAGGTACTAAGAGAAGCATACTCTCATCCAGCAGTTCAAGGGATTATAATGTTTGCTGGTCCAGCACAAGCTGGTTTCAACAGTACACTTCTTGCAGATACAAATTTCCAAACTACTCCAACTGGACAAGTTGTGGACAATTTGATTCTTGAATGGGGAAGTGGGCCTTATACAGCCAAAGCAGATAGTAGAGGAATTGTAGATATTTCATTACATCATGGAGATTATGATGTAACTGTTACACATCCTTCAAACCATTACTCCAAAAAATTGAATTTAAGTGTCAGGAAAGGGTTTTCACAGGAAAACGTCCATGTGAAAATGCATGCCTAA

Protein sequence

>MS.gene96694.t1

MKVSAKCCNLLFITTSFLLLISGLGVHSLDYDYFATIECMKEPQRAQYGGGIIVNSGFDHNIEGWTVSGNGTIEERISNGGNRFIVASKRTQSLDSFSQTVQLEKGLIYTFSAWLQLSEGSDTVSVVFKTNGSELVHGGHVIAKHGCWSLLKGGIVANFSSPAEILFESNNPSVEIWADSVSLQPFTKKEWRSHQDNNIERVRKSRVRFHVSNANETASEGATVVITQTKADFPFGCGMNHHILTNIDYQEWFVSRFKYTTFTNEMKWYSTEKIPGQENYTIPDAMLEFAKDNGISVRGHNIFWDDEKYQPEWVKYLSPDKLRKAAKKRIESVVKRYKGELIAWDVVNENVHFHFYEDKLGENASELYYLKAHELDPKTTLFMNEYNTIEYSGDKVVSPPNYLKKLEEIMQSGEATEMLFAIGLQGHFASGQPNLAYMRSGLDFLGNIGFPIWLTEASLDPQPNQAEYFEEVLREAYSHPAVQGIIMFAGPAQAGFNSTLLADTNFQTTPTGQVVDNLILEWGSGPYTAKADSRGIVDISLHHGDYDVTVTHPSNHYSKKLNLSVRKGFSQENVHVKMHA