Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene96694.t1 | KEH44019.1 | 95.7 | 581 | 24 | 1 | 1 | 580 | 1 | 581 | 0.00E+00 | 1135.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene96694.t1 | Q84WT5 | 46.2 | 580 | 276 | 8 | 9 | 574 | 6 | 563 | 1.9e-141 | 504.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene96694.t1 | A0A072VPS6 | 95.7 | 581 | 24 | 1 | 1 | 580 | 1 | 581 | 0.0e+00 | 1135.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050809 | MS.gene96694 | 0.814879 | 1.23E-51 | -1.69E-46 |
MS.gene052870 | MS.gene96694 | -0.800153 | 1.65E-48 | -1.69E-46 |
MS.gene056947 | MS.gene96694 | -0.802871 | 4.57E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene96694.t1 | MTR_1g106200 | 95.697 | 581 | 24 | 1 | 1 | 580 | 1 | 581 | 0.0 | 1159 |
MS.gene96694.t1 | MTR_1g106200 | 90.189 | 581 | 23 | 2 | 1 | 580 | 7 | 554 | 0.0 | 1076 |
MS.gene96694.t1 | MTR_1g106910 | 75.172 | 580 | 144 | 0 | 1 | 580 | 1 | 580 | 0.0 | 919 |
MS.gene96694.t1 | MTR_1g106790 | 73.621 | 580 | 152 | 1 | 1 | 580 | 2 | 580 | 0.0 | 901 |
MS.gene96694.t1 | MTR_1g106770 | 74.312 | 545 | 140 | 0 | 36 | 580 | 2 | 546 | 0.0 | 878 |
MS.gene96694.t1 | MTR_7g024420 | 50.000 | 532 | 262 | 3 | 22 | 553 | 13 | 540 | 0.0 | 551 |
MS.gene96694.t1 | MTR_4g074070 | 48.155 | 542 | 277 | 3 | 12 | 553 | 3 | 540 | 0.0 | 539 |
MS.gene96694.t1 | MTR_5g049180 | 47.664 | 535 | 276 | 3 | 18 | 552 | 9 | 539 | 0.0 | 530 |
MS.gene96694.t1 | MTR_3g117800 | 36.620 | 568 | 318 | 9 | 18 | 578 | 1 | 533 | 9.70e-116 | 354 |
MS.gene96694.t1 | MTR_3g117800 | 39.958 | 478 | 270 | 7 | 108 | 578 | 15 | 482 | 7.53e-113 | 345 |
MS.gene96694.t1 | MTR_3g117800 | 40.674 | 445 | 250 | 5 | 139 | 578 | 17 | 452 | 1.90e-109 | 335 |
MS.gene96694.t1 | MTR_4g121520 | 54.887 | 266 | 67 | 3 | 315 | 580 | 222 | 434 | 1.37e-85 | 273 |
MS.gene96694.t1 | MTR_3g103610 | 29.873 | 472 | 295 | 12 | 44 | 489 | 192 | 653 | 1.32e-59 | 211 |
MS.gene96694.t1 | MTR_1g017020 | 27.641 | 568 | 361 | 15 | 44 | 578 | 353 | 903 | 1.46e-56 | 205 |
MS.gene96694.t1 | MTR_1463s0010 | 40.310 | 129 | 31 | 4 | 381 | 509 | 1 | 83 | 1.11e-16 | 76.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene96694.t1 | AT4G33840 | 51.292 | 542 | 257 | 5 | 27 | 565 | 21 | 558 | 0.0 | 565 |
MS.gene96694.t1 | AT4G33830 | 49.074 | 540 | 267 | 6 | 29 | 565 | 24 | 558 | 0.0 | 522 |
MS.gene96694.t1 | AT4G33860 | 50.379 | 528 | 255 | 5 | 29 | 553 | 23 | 546 | 4.34e-180 | 521 |
MS.gene96694.t1 | AT4G33820 | 46.207 | 580 | 276 | 8 | 9 | 574 | 6 | 563 | 7.98e-177 | 512 |
MS.gene96694.t1 | AT4G33810 | 45.833 | 576 | 279 | 8 | 8 | 574 | 11 | 562 | 6.51e-169 | 492 |
MS.gene96694.t1 | AT4G33810 | 45.833 | 576 | 279 | 8 | 8 | 574 | 11 | 562 | 6.51e-169 | 492 |
MS.gene96694.t1 | AT4G33810 | 45.833 | 576 | 279 | 8 | 8 | 574 | 11 | 562 | 6.51e-169 | 492 |
MS.gene96694.t1 | AT4G33810 | 47.514 | 543 | 256 | 7 | 40 | 574 | 1 | 522 | 5.01e-167 | 486 |
MS.gene96694.t1 | AT4G33810 | 47.514 | 543 | 256 | 7 | 40 | 574 | 1 | 522 | 5.01e-167 | 486 |
MS.gene96694.t1 | AT2G14690 | 44.946 | 554 | 259 | 10 | 31 | 567 | 32 | 556 | 1.07e-161 | 474 |
MS.gene96694.t1 | AT4G38650 | 37.225 | 591 | 329 | 11 | 1 | 579 | 1 | 561 | 5.17e-126 | 382 |
MS.gene96694.t1 | AT4G38300 | 44.015 | 259 | 131 | 4 | 201 | 459 | 10 | 254 | 1.57e-71 | 231 |
MS.gene96694.t1 | AT1G10050 | 28.862 | 589 | 361 | 16 | 32 | 578 | 523 | 1095 | 6.02e-60 | 216 |
MS.gene96694.t1 | AT1G10050 | 28.862 | 589 | 361 | 16 | 32 | 578 | 491 | 1063 | 1.10e-59 | 215 |
MS.gene96694.t1 | AT1G10050 | 28.862 | 589 | 361 | 16 | 32 | 578 | 491 | 1063 | 1.10e-59 | 215 |
MS.gene96694.t1 | AT1G58370 | 29.661 | 472 | 291 | 12 | 48 | 489 | 366 | 826 | 1.14e-58 | 211 |
MS.gene96694.t1 | AT1G58370 | 29.661 | 472 | 291 | 12 | 48 | 489 | 394 | 854 | 1.62e-58 | 211 |
MS.gene96694.t1 | AT4G08160 | 30.162 | 494 | 315 | 15 | 80 | 554 | 245 | 727 | 8.70e-57 | 204 |
MS.gene96694.t1 | AT4G08160 | 31.754 | 422 | 262 | 12 | 80 | 484 | 245 | 657 | 6.50e-56 | 200 |
Find 104 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTGCAACCATTTACTAAAA+AGG | 0.196675 | 1.1:-76419926 | MS.gene96694:CDS |
CGCGGCTTTGCGCAATTTAT+CGG | 0.228371 | 1.1:+76419208 | None:intergenic |
ATAATCCAAGTGTGGAAATA+TGG | 0.243112 | 1.1:-76419963 | MS.gene96694:CDS |
GTAATATTGGATTTCCAATA+TGG | 0.244796 | 1.1:-76418827 | MS.gene96694:CDS |
GATAAATACTTAACCCATTC+AGG | 0.250247 | 1.1:+76419233 | None:intergenic |
TTAGAATTTGCTAAAGATAA+TGG | 0.267266 | 1.1:-76419305 | MS.gene96694:CDS |
CTGGCTTCTGTGAGCCATAT+TGG | 0.278897 | 1.1:+76418813 | None:intergenic |
TATCCTCATAAAAGTGAAAA+TGG | 0.296065 | 1.1:+76419111 | None:intergenic |
CCCTTTCAATGTTGTTGTCT+TGG | 0.298203 | 1.1:+76419890 | None:intergenic |
GAATTGAATCTGTTGTTAAA+AGG | 0.302891 | 1.1:-76419178 | MS.gene96694:CDS |
CTTGTCCAGTTGGAGTAGTT+TGG | 0.315012 | 1.1:+76418545 | None:intergenic |
GCAAATTCTAACATTGCATC+TGG | 0.318088 | 1.1:+76419317 | None:intergenic |
CTATCTGCTTTGGCTGTATA+AGG | 0.325055 | 1.1:+76418487 | None:intergenic |
ATAGAGGGTTGGACAGTATC+TGG | 0.325119 | 1.1:-76420782 | MS.gene96694:CDS |
TTGGCTGGCCACTTGCAAAA+TGG | 0.329470 | 1.1:+76418886 | None:intergenic |
AGGGCTAGGCGTTCATTCTT+TGG | 0.333367 | 1.1:-76421001 | MS.gene96694:CDS |
AGGAATCAATATACCTGATT+TGG | 0.339675 | 1.1:+76418777 | None:intergenic |
ACAAAGGCAGATTTCCCATT+TGG | 0.372177 | 1.1:-76419479 | MS.gene96694:CDS |
CAAGGGATTATAATGTTTGC+TGG | 0.384553 | 1.1:-76418616 | MS.gene96694:CDS |
GACCTCATGTAAGCAAGATT+TGG | 0.386824 | 1.1:+76418867 | None:intergenic |
ATGGCTCACAGAAGCCAGTT+TGG | 0.392362 | 1.1:-76418808 | MS.gene96694:CDS |
ATCTTGACACAAACCATTCC+TGG | 0.399462 | 1.1:+76419417 | None:intergenic |
AATTCCTCTACTATCTGCTT+TGG | 0.405314 | 1.1:+76418477 | None:intergenic |
TATAGTACAGAGAAAATTCC+AGG | 0.407018 | 1.1:-76419359 | MS.gene96694:CDS |
TCTGTTGTATTTAAAACAAA+TGG | 0.411591 | 1.1:-76420469 | MS.gene96694:CDS |
GCGGCTTTGCGCAATTTATC+GGG | 0.413681 | 1.1:+76419209 | None:intergenic |
ATTATAATCCCTTGAACTGC+TGG | 0.416207 | 1.1:+76418625 | None:intergenic |
TCTTTCCTTCTACTTATCTC+AGG | 0.416467 | 1.1:-76421098 | MS.gene96694:intron |
GGACAATTTGATTCTTGAAT+GGG | 0.428361 | 1.1:-76418518 | MS.gene96694:CDS |
AATTTCCAAACTACTCCAAC+TGG | 0.432243 | 1.1:-76418550 | MS.gene96694:CDS |
GAACCTCAGAGAGCACAATA+TGG | 0.433972 | 1.1:-76420842 | MS.gene96694:CDS |
CTTGAGGAGATTATGCAATC+TGG | 0.434202 | 1.1:-76418948 | MS.gene96694:CDS |
TATAATACTATTGAATATAG+TGG | 0.435039 | 1.1:-76419008 | MS.gene96694:CDS |
TGGACAATTTGATTCTTGAA+TGG | 0.435532 | 1.1:-76418519 | MS.gene96694:CDS |
AGAAACCTGAGATAAGTAGA+AGG | 0.437755 | 1.1:+76421093 | None:intergenic |
TACTCTCATCCAGCAGTTCA+AGG | 0.446618 | 1.1:-76418634 | MS.gene96694:CDS |
TTTGGATCCTCAGCCAAATC+AGG | 0.451900 | 1.1:-76418790 | MS.gene96694:intron |
TTGATTCTTGAATGGGGAAG+TGG | 0.457488 | 1.1:-76418511 | MS.gene96694:CDS |
TAATCCAAGTGTGGAAATAT+GGG | 0.461783 | 1.1:-76419962 | MS.gene96694:CDS |
TTTCATTTGCATTACTTACA+TGG | 0.462597 | 1.1:+76419537 | None:intergenic |
TGAATTTAAGTGTCAGGAAA+GGG | 0.466143 | 1.1:-76418381 | MS.gene96694:CDS |
ATTTGGCTGAGGATCCAAAC+TGG | 0.478667 | 1.1:+76418794 | None:intergenic |
GCAGATTTCCCATTTGGATG+TGG | 0.480363 | 1.1:-76419473 | MS.gene96694:CDS |
TGGTTCATCCCACATCCAAA+TGG | 0.480525 | 1.1:+76419464 | None:intergenic |
CAAACGGTTCAGCTAGAGAA+AGG | 0.482100 | 1.1:-76420671 | MS.gene96694:CDS |
CAGATTTCCCATTTGGATGT+GGG | 0.482548 | 1.1:-76419472 | MS.gene96694:CDS |
TCAGCCCATATTTCCACACT+TGG | 0.484189 | 1.1:+76419958 | None:intergenic |
ATTGAGGAACGTATATCAAA+TGG | 0.491052 | 1.1:-76420749 | MS.gene96694:CDS |
GGTTGGACAGTATCTGGAAA+TGG | 0.499106 | 1.1:-76420776 | MS.gene96694:CDS |
ACCAAGACAACAACATTGAA+AGG | 0.500494 | 1.1:-76419891 | MS.gene96694:CDS |
TACTCCAACTGGACAAGTTG+TGG | 0.508753 | 1.1:-76418539 | MS.gene96694:CDS |
ACCTCGAAAAGAATCTCAGC+CGG | 0.511024 | 1.1:+76420358 | None:intergenic |
CTGTTGAAACCAGCTTGTGC+TGG | 0.513392 | 1.1:+76418592 | None:intergenic |
TTGAATTTAAGTGTCAGGAA+AGG | 0.514898 | 1.1:-76418382 | MS.gene96694:CDS |
AATCTTGCTTACATGAGGTC+AGG | 0.523790 | 1.1:-76418864 | MS.gene96694:CDS |
GGTTCATCCCACATCCAAAT+GGG | 0.524124 | 1.1:+76419465 | None:intergenic |
AAAATGGCCTTGCAATCCTA+TGG | 0.528513 | 1.1:+76418902 | None:intergenic |
GTAGATATTTCATTACATCA+TGG | 0.536564 | 1.1:-76418454 | MS.gene96694:CDS |
TTTGCTGGTCCAGCACAAGC+TGG | 0.541008 | 1.1:-76418601 | MS.gene96694:CDS |
AGGATTTGATCACAACATAG+AGG | 0.543988 | 1.1:-76420798 | MS.gene96694:CDS |
ACTGAAATGTTATTTGCCAT+AGG | 0.544070 | 1.1:-76418918 | MS.gene96694:CDS |
ATCTGGAAATGGAACAATTG+AGG | 0.546320 | 1.1:-76420765 | MS.gene96694:CDS |
CCAAGACAACAACATTGAAA+GGG | 0.549553 | 1.1:-76419890 | MS.gene96694:intron |
CCTCGAAAAGAATCTCAGCC+GGG | 0.555600 | 1.1:+76420359 | None:intergenic |
TTATTTGCCATAGGATTGCA+AGG | 0.558146 | 1.1:-76418909 | MS.gene96694:CDS |
CCCAGAAAATGTTATGACCT+CGG | 0.560200 | 1.1:+76419273 | None:intergenic |
CAAACATTGACTACCAGGAA+TGG | 0.563798 | 1.1:-76419430 | MS.gene96694:CDS |
TGAGATAAGTAGAAGGAAAG+AGG | 0.565953 | 1.1:+76421100 | None:intergenic |
TGATTCTTGAATGGGGAAGT+GGG | 0.567685 | 1.1:-76418510 | MS.gene96694:CDS |
TTGATCACAACATAGAGGGT+TGG | 0.568919 | 1.1:-76420793 | MS.gene96694:CDS |
TCATGTAAGCAAGATTTGGC+TGG | 0.570296 | 1.1:+76418871 | None:intergenic |
ACAAAGGAGAATTGATAGCA+TGG | 0.571786 | 1.1:-76419154 | MS.gene96694:CDS |
CTTTCACTAATGAGATGAAG+TGG | 0.573436 | 1.1:-76419382 | MS.gene96694:CDS |
CAATATACCTGATTTGGCTG+AGG | 0.579698 | 1.1:+76418783 | None:intergenic |
CAAATTCTAACATTGCATCT+GGG | 0.582016 | 1.1:+76419318 | None:intergenic |
AGTTGCAAACTTCTCGAGCC+CGG | 0.584837 | 1.1:-76420377 | MS.gene96694:CDS |
TTGTCCACAACTTGTCCAGT+TGG | 0.589012 | 1.1:+76418535 | None:intergenic |
CAATGTTTGTGAGAATATGA+TGG | 0.591061 | 1.1:+76419444 | None:intergenic |
GGATTTGATCACAACATAGA+GGG | 0.591949 | 1.1:-76420797 | MS.gene96694:CDS |
TCTGTTGTTAAAAGGTACAA+AGG | 0.592676 | 1.1:-76419170 | MS.gene96694:CDS |
GCTTGGCTTCAGTTGAGTGA+AGG | 0.592889 | 1.1:-76420505 | MS.gene96694:CDS |
CCTCCATATTGTGCTCTCTG+AGG | 0.597382 | 1.1:+76420839 | None:intergenic |
TCTCACAAACATTGACTACC+AGG | 0.597515 | 1.1:-76419435 | MS.gene96694:CDS |
GATAATGGAATTTCTGTCCG+AGG | 0.602235 | 1.1:-76419290 | MS.gene96694:CDS |
CAAAGGAGAATTGATAGCAT+GGG | 0.602744 | 1.1:-76419153 | MS.gene96694:CDS |
TAATGCAAATGAAACAGCAT+CGG | 0.605090 | 1.1:-76419528 | MS.gene96694:CDS |
CAGAGAGCACAATATGGAGG+AGG | 0.606885 | 1.1:-76420836 | MS.gene96694:CDS |
GATAAGTAGAAGGAAAGAGG+TGG | 0.610537 | 1.1:+76421103 | None:intergenic |
ACTCTCATCCAGCAGTTCAA+GGG | 0.613025 | 1.1:-76418633 | MS.gene96694:CDS |
ATCCATGCTTTGCTATCACA+TGG | 0.619431 | 1.1:+76420425 | None:intergenic |
GCAGGCAGAGTACTTTGAAG+AGG | 0.621359 | 1.1:-76418671 | MS.gene96694:intron |
AGTTGTGATAACACAAACAA+AGG | 0.625979 | 1.1:-76419495 | MS.gene96694:CDS |
AGCCAAATCTTGCTTACATG+AGG | 0.629685 | 1.1:-76418869 | MS.gene96694:CDS |
GCAAATGAAACAGCATCGGA+AGG | 0.632167 | 1.1:-76419524 | MS.gene96694:CDS |
GGAGGCATTATAGTAAACTC+AGG | 0.632520 | 1.1:-76420818 | MS.gene96694:CDS |
GACAATTTGATTCTTGAATG+GGG | 0.637575 | 1.1:-76418517 | MS.gene96694:CDS |
GGCCATGTGATAGCAAAGCA+TGG | 0.645129 | 1.1:-76420427 | MS.gene96694:CDS |
ACAGCCAAAGCAGATAGTAG+AGG | 0.647030 | 1.1:-76418481 | MS.gene96694:CDS |
GAGGAACGTATATCAAATGG+TGG | 0.659694 | 1.1:-76420746 | MS.gene96694:CDS |
GCAGAGCAATAATCCAAGTG+TGG | 0.666015 | 1.1:-76419971 | MS.gene96694:intron |
TGATAGCAAAGCATGGATGT+TGG | 0.670562 | 1.1:-76420420 | MS.gene96694:CDS |
CCTCAGAGAGCACAATATGG+AGG | 0.677720 | 1.1:-76420839 | MS.gene96694:CDS |
AATGGAAGTGAACTTGTGCA+TGG | 0.692631 | 1.1:-76420451 | MS.gene96694:CDS |
GGAAGTGAACTTGTGCATGG+TGG | 0.735930 | 1.1:-76420448 | MS.gene96694:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATATTTTGTTACAATTTTTT+TGG | + | chr1.1:76419840-76419859 | None:intergenic | 10.0% |
!! | AAGAAATACTAAAATTAGAA+CGG | - | chr1.1:76419727-76419746 | MS.gene96694:intron | 15.0% |
!! | TATAATACTATTGAATATAG+TGG | - | chr1.1:76420477-76420496 | MS.gene96694:CDS | 15.0% |
!! | TGTTATGTAACAAAAAAATT+TGG | - | chr1.1:76419465-76419484 | MS.gene96694:CDS | 15.0% |
!!! | AAAATTTTACATGTACTTTT+TGG | - | chr1.1:76419382-76419401 | MS.gene96694:CDS | 15.0% |
!!! | ATTTCTTTTGAGTATAAAAT+TGG | + | chr1.1:76419714-76419733 | None:intergenic | 15.0% |
!! | AAAAATTGAATTTAAGTGTC+AGG | - | chr1.1:76421098-76421117 | MS.gene96694:intron | 20.0% |
!! | ATTTATAGGGACTAAATATA+GGG | - | chr1.1:76419241-76419260 | MS.gene96694:CDS | 20.0% |
!!! | AATTCAATTTTTTGGAGTAA+TGG | + | chr1.1:76421090-76421109 | None:intergenic | 20.0% |
!!! | AGTCCTTATTTTTCATTTAT+AGG | - | chr1.1:76419227-76419246 | MS.gene96694:CDS | 20.0% |
!!! | ATTAGATAGTTTTTCACAAA+CGG | - | chr1.1:76418798-76418817 | MS.gene96694:CDS | 20.0% |
!!! | GACACTTAAATTCAATTTTT+TGG | + | chr1.1:76421098-76421117 | None:intergenic | 20.0% |
!!! | GGCATAAATATATTTTCAAT+CGG | + | chr1.1:76419323-76419342 | None:intergenic | 20.0% |
!!! | GTCCTTATTTTTCATTTATA+GGG | - | chr1.1:76419228-76419247 | MS.gene96694:CDS | 20.0% |
!!! | TCTGTTGTATTTAAAACAAA+TGG | - | chr1.1:76419016-76419035 | MS.gene96694:CDS | 20.0% |
!!! | TTAGAATTTGCTAAAGATAA+TGG | - | chr1.1:76420180-76420199 | MS.gene96694:intron | 20.0% |
!!! | TTCATAAACAATGTTGTTTT+TGG | + | chr1.1:76420453-76420472 | None:intergenic | 20.0% |
! | AACCATTTACTAAAAAGGAA+TGG | - | chr1.1:76419564-76419583 | MS.gene96694:intron | 25.0% |
! | ATAAGAATTCAGAAACAACA+AGG | + | chr1.1:76419432-76419451 | None:intergenic | 25.0% |
! | ATGAAAAATATCAACCTGAA+TGG | - | chr1.1:76420238-76420257 | MS.gene96694:intron | 25.0% |
! | CATTTATAGGGACTAAATAT+AGG | - | chr1.1:76419240-76419259 | MS.gene96694:CDS | 25.0% |
! | GAATTGAATCTGTTGTTAAA+AGG | - | chr1.1:76420307-76420326 | MS.gene96694:intron | 25.0% |
! | GTAATATTGGATTTCCAATA+TGG | - | chr1.1:76420658-76420677 | MS.gene96694:CDS | 25.0% |
! | GTAGATATTTCATTACATCA+TGG | - | chr1.1:76421031-76421050 | MS.gene96694:intron | 25.0% |
! | GTCCCTATAAATGAAAAATA+AGG | + | chr1.1:76419233-76419252 | None:intergenic | 25.0% |
! | TATCCTCATAAAAGTGAAAA+TGG | + | chr1.1:76420377-76420396 | None:intergenic | 25.0% |
! | TGAAAAATATCAACCTGAAT+GGG | - | chr1.1:76420239-76420258 | MS.gene96694:intron | 25.0% |
! | TTTCATTTGCATTACTTACA+TGG | + | chr1.1:76419951-76419970 | None:intergenic | 25.0% |
!! | AGTCTTGATTTATAACTTGT+AGG | - | chr1.1:76419903-76419922 | MS.gene96694:CDS | 25.0% |
!! | TCCTTTTTACAAATCAATAC+TGG | + | chr1.1:76419874-76419893 | None:intergenic | 25.0% |
!!! | ACCAGTATTGATTTGTAAAA+AGG | - | chr1.1:76419870-76419889 | MS.gene96694:intron | 25.0% |
!!! | AGATTCAATTCTTTTTTTCG+CGG | + | chr1.1:76420298-76420317 | None:intergenic | 25.0% |
!!! | CTAGATTTTCTTGGTAATAT+TGG | - | chr1.1:76420645-76420664 | MS.gene96694:intron | 25.0% |
!!! | TAAAATTGGTTTGCTTACTA+TGG | + | chr1.1:76419700-76419719 | None:intergenic | 25.0% |
!!! | TCAAGTTTTTTGAGATAGTT+GGG | + | chr1.1:76420522-76420541 | None:intergenic | 25.0% |
!!! | TCATACACTGTTTTATTTCA+AGG | + | chr1.1:76418621-76418640 | None:intergenic | 25.0% |
!!! | TGATTATTTTGCTACTATTG+AGG | - | chr1.1:76418511-76418530 | MS.gene96694:CDS | 25.0% |
AGGAATCAATATACCTGATT+TGG | + | chr1.1:76420711-76420730 | None:intergenic | 30.0% | |
AGTTGTGATAACACAAACAA+AGG | - | chr1.1:76419990-76420009 | MS.gene96694:intron | 30.0% | |
ATAATCCAAGTGTGGAAATA+TGG | - | chr1.1:76419522-76419541 | MS.gene96694:CDS | 30.0% | |
ATCTTCACAACATATATGCA+GGG | - | chr1.1:76418465-76418484 | MS.gene96694:CDS | 30.0% | |
ATTGAGGAACGTATATCAAA+TGG | - | chr1.1:76418736-76418755 | MS.gene96694:intron | 30.0% | |
CAAATTCTAACATTGCATCT+GGG | + | chr1.1:76420170-76420189 | None:intergenic | 30.0% | |
CAACTATCTCAAAAAACTTG+AGG | - | chr1.1:76420521-76420540 | MS.gene96694:intron | 30.0% | |
CAATGTTTGTGAGAATATGA+TGG | + | chr1.1:76420044-76420063 | None:intergenic | 30.0% | |
CATACTTCGTACAAATAACA+TGG | - | chr1.1:76419811-76419830 | MS.gene96694:intron | 30.0% | |
CTTGCAACCATTTACTAAAA+AGG | - | chr1.1:76419559-76419578 | MS.gene96694:CDS | 30.0% | |
GACAATTTGATTCTTGAATG+GGG | - | chr1.1:76420968-76420987 | MS.gene96694:intron | 30.0% | |
GATAAATACTTAACCCATTC+AGG | + | chr1.1:76420255-76420274 | None:intergenic | 30.0% | |
GGACAATTTGATTCTTGAAT+GGG | - | chr1.1:76420967-76420986 | MS.gene96694:intron | 30.0% | |
TAATCCAAGTGTGGAAATAT+GGG | - | chr1.1:76419523-76419542 | MS.gene96694:CDS | 30.0% | |
TAATGCAAATGAAACAGCAT+CGG | - | chr1.1:76419957-76419976 | MS.gene96694:CDS | 30.0% | |
TATAGTACAGAGAAAATTCC+AGG | - | chr1.1:76420126-76420145 | MS.gene96694:intron | 30.0% | |
TATCTTCACAACATATATGC+AGG | - | chr1.1:76418464-76418483 | MS.gene96694:CDS | 30.0% | |
TCTTGCTTCTATAAAAGAGA+AGG | + | chr1.1:76419344-76419363 | None:intergenic | 30.0% | |
TGAATTTAAGTGTCAGGAAA+GGG | - | chr1.1:76421104-76421123 | MS.gene96694:CDS | 30.0% | |
TGGACAATTTGATTCTTGAA+TGG | - | chr1.1:76420966-76420985 | MS.gene96694:intron | 30.0% | |
TTGAATTTAAGTGTCAGGAA+AGG | - | chr1.1:76421103-76421122 | MS.gene96694:CDS | 30.0% | |
TTTGTAATACTACCAACTTG+AGG | - | chr1.1:76419666-76419685 | MS.gene96694:intron | 30.0% | |
! | ACTGAAATGTTATTTGCCAT+AGG | - | chr1.1:76420567-76420586 | MS.gene96694:intron | 30.0% |
! | CACTTTTATGAGGATAAACT+AGG | - | chr1.1:76420381-76420400 | MS.gene96694:CDS | 30.0% |
! | CGGCTTAAAATTACATGTTT+TGG | + | chr1.1:76419303-76419322 | None:intergenic | 30.0% |
! | TAATGATTGTGTTCTTTTGC+TGG | + | chr1.1:76418782-76418801 | None:intergenic | 30.0% |
! | TCTGTTGTTAAAAGGTACAA+AGG | - | chr1.1:76420315-76420334 | MS.gene96694:intron | 30.0% |
!! | CTCCATTCCTTTTTAGTAAA+TGG | + | chr1.1:76419569-76419588 | None:intergenic | 30.0% |
!! | CTTTTTAGTAAATGGTTGCA+AGG | + | chr1.1:76419561-76419580 | None:intergenic | 30.0% |
!! | GTGATTCTTATTTGTTATGC+AGG | - | chr1.1:76420796-76420815 | MS.gene96694:CDS | 30.0% |
!! | TGTCCATTTTCACTTTTATG+AGG | - | chr1.1:76420371-76420390 | MS.gene96694:CDS | 30.0% |
!! | TTTTATTTCCACATTCAGCT+TGG | - | chr1.1:76418963-76418982 | MS.gene96694:CDS | 30.0% |
!!! | ACTGTTTTATTTCAAGGCAT+TGG | + | chr1.1:76418615-76418634 | None:intergenic | 30.0% |
!!! | CTCAAGTTTTTTGAGATAGT+TGG | + | chr1.1:76420523-76420542 | None:intergenic | 30.0% |
!!! | GGATTGATATACACTTTTTC+AGG | - | chr1.1:76418835-76418854 | MS.gene96694:CDS | 30.0% |
!!! | TTTTTGGAGTAATGGTTTGA+AGG | + | chr1.1:76421082-76421101 | None:intergenic | 30.0% |
AATTCCTCTACTATCTGCTT+TGG | + | chr1.1:76421011-76421030 | None:intergenic | 35.0% | |
AATTTCCAAACTACTCCAAC+TGG | - | chr1.1:76420935-76420954 | MS.gene96694:intron | 35.0% | |
ACCAAGACAACAACATTGAA+AGG | - | chr1.1:76419594-76419613 | MS.gene96694:intron | 35.0% | |
AGAAACCTGAGATAAGTAGA+AGG | + | chr1.1:76418395-76418414 | None:intergenic | 35.0% | |
AGGATTTGATCACAACATAG+AGG | - | chr1.1:76418687-76418706 | MS.gene96694:intron | 35.0% | |
ATCTGGAAATGGAACAATTG+AGG | - | chr1.1:76418720-76418739 | MS.gene96694:intron | 35.0% | |
ATTATAATCCCTTGAACTGC+TGG | + | chr1.1:76420863-76420882 | None:intergenic | 35.0% | |
CAAGGGATTATAATGTTTGC+TGG | - | chr1.1:76420869-76420888 | MS.gene96694:intron | 35.0% | |
CCAAGACAACAACATTGAAA+GGG | - | chr1.1:76419595-76419614 | MS.gene96694:intron | 35.0% | |
CTTTCACTAATGAGATGAAG+TGG | - | chr1.1:76420103-76420122 | MS.gene96694:intron | 35.0% | |
GCAAATTCTAACATTGCATC+TGG | + | chr1.1:76420171-76420190 | None:intergenic | 35.0% | |
GGATTTGATCACAACATAGA+GGG | - | chr1.1:76418688-76418707 | MS.gene96694:intron | 35.0% | |
TAGAACGGATAATAAAGACG+TGG | - | chr1.1:76419742-76419761 | MS.gene96694:intron | 35.0% | |
TCTTTCCTTCTACTTATCTC+AGG | - | chr1.1:76418387-76418406 | MS.gene96694:CDS | 35.0% | |
TGAGATAAGTAGAAGGAAAG+AGG | + | chr1.1:76418388-76418407 | None:intergenic | 35.0% | |
TTATTTGCCATAGGATTGCA+AGG | - | chr1.1:76420576-76420595 | MS.gene96694:intron | 35.0% | |
TTGTCGATGCATAAGTTTAG+TGG | + | chr1.1:76419783-76419802 | None:intergenic | 35.0% | |
! | ACAAAGGAGAATTGATAGCA+TGG | - | chr1.1:76420331-76420350 | MS.gene96694:intron | 35.0% |
! | ACCTTGTACTTTTCCTGAAT+CGG | - | chr1.1:76419405-76419424 | MS.gene96694:CDS | 35.0% |
! | ATGGATTTTGTTCCTCAAGT+TGG | + | chr1.1:76419681-76419700 | None:intergenic | 35.0% |
! | CAAAGGAGAATTGATAGCAT+GGG | - | chr1.1:76420332-76420351 | MS.gene96694:intron | 35.0% |
! | GTAGCACTGAATTATAGAGA+GGG | + | chr1.1:76418424-76418443 | None:intergenic | 35.0% |
! | TGTAGCACTGAATTATAGAG+AGG | + | chr1.1:76418425-76418444 | None:intergenic | 35.0% |
!! | GAGATTCTTTTCGAGGTTAA+CGG | - | chr1.1:76419133-76419152 | MS.gene96694:CDS | 35.0% |
!! | GGATGTTGGTCTCTTTTAAA+AGG | - | chr1.1:76419079-76419098 | MS.gene96694:CDS | 35.0% |
!! | TCATTTTACGTTTGAAGTCG+AGG | + | chr1.1:76420731-76420750 | None:intergenic | 35.0% |
!! | TGTTGGTCTCTTTTAAAAGG+CGG | - | chr1.1:76419082-76419101 | MS.gene96694:CDS | 35.0% |
!!! | AGTTTTTTGAGATAGTTGGG+TGG | + | chr1.1:76420519-76420538 | None:intergenic | 35.0% |
!!! | GTTTTTTGAGATAGTTGGGT+GGG | + | chr1.1:76420518-76420537 | None:intergenic | 35.0% |
AATCTTGCTTACATGAGGTC+AGG | - | chr1.1:76420621-76420640 | MS.gene96694:intron | 40.0% | |
AATGGAAGTGAACTTGTGCA+TGG | - | chr1.1:76419034-76419053 | MS.gene96694:CDS | 40.0% | |
ACAAAGGCAGATTTCCCATT+TGG | - | chr1.1:76420006-76420025 | MS.gene96694:intron | 40.0% | |
ACGGATAATAAAGACGTGGT+TGG | - | chr1.1:76419746-76419765 | MS.gene96694:intron | 40.0% | |
AGCCAAATCTTGCTTACATG+AGG | - | chr1.1:76420616-76420635 | MS.gene96694:intron | 40.0% | |
ATCTTGACACAAACCATTCC+TGG | + | chr1.1:76420071-76420090 | None:intergenic | 40.0% | |
CAGATTTCCCATTTGGATGT+GGG | - | chr1.1:76420013-76420032 | MS.gene96694:intron | 40.0% | |
CCCAGAAAATGTTATGACCT+CGG | + | chr1.1:76420215-76420234 | None:intergenic | 40.0% | |
CCCTTTCAATGTTGTTGTCT+TGG | + | chr1.1:76419598-76419617 | None:intergenic | 40.0% | |
CGGATAATAAAGACGTGGTT+GGG | - | chr1.1:76419747-76419766 | MS.gene96694:intron | 40.0% | |
CTATCTGCTTTGGCTGTATA+AGG | + | chr1.1:76421001-76421020 | None:intergenic | 40.0% | |
CTTGAGGAGATTATGCAATC+TGG | - | chr1.1:76420537-76420556 | MS.gene96694:intron | 40.0% | |
GACCTCATGTAAGCAAGATT+TGG | + | chr1.1:76420621-76420640 | None:intergenic | 40.0% | |
GAGGAACGTATATCAAATGG+TGG | - | chr1.1:76418739-76418758 | MS.gene96694:intron | 40.0% | |
GATAAGTAGAAGGAAAGAGG+TGG | + | chr1.1:76418385-76418404 | None:intergenic | 40.0% | |
TCATGTAAGCAAGATTTGGC+TGG | + | chr1.1:76420617-76420636 | None:intergenic | 40.0% | |
TGATAGCAAAGCATGGATGT+TGG | - | chr1.1:76419065-76419084 | MS.gene96694:CDS | 40.0% | |
TGATTCTTGAATGGGGAAGT+GGG | - | chr1.1:76420975-76420994 | MS.gene96694:CDS | 40.0% | |
TTGATCACAACATAGAGGGT+TGG | - | chr1.1:76418692-76418711 | MS.gene96694:intron | 40.0% | |
TTGATTCTTGAATGGGGAAG+TGG | - | chr1.1:76420974-76420993 | MS.gene96694:intron | 40.0% | |
! | AAAATGGCCTTGCAATCCTA+TGG | + | chr1.1:76420586-76420605 | None:intergenic | 40.0% |
! | ACCGATTCAGGAAAAGTACA+AGG | + | chr1.1:76419409-76419428 | None:intergenic | 40.0% |
! | AGGTCAGGTCTAGATTTTCT+TGG | - | chr1.1:76420636-76420655 | MS.gene96694:intron | 40.0% |
! | ATAGTGTAGTTTTCTTGGCC+TGG | + | chr1.1:76420147-76420166 | None:intergenic | 40.0% |
! | ATCCATGCTTTGCTATCACA+TGG | + | chr1.1:76419063-76419082 | None:intergenic | 40.0% |
! | ATGTTTTCGCAGTTACACGA+AGG | - | chr1.1:76420760-76420779 | MS.gene96694:CDS | 40.0% |
! | CAAACATTGACTACCAGGAA+TGG | - | chr1.1:76420055-76420074 | MS.gene96694:intron | 40.0% |
! | CCGAGGTCATAACATTTTCT+GGG | - | chr1.1:76420212-76420231 | MS.gene96694:intron | 40.0% |
! | CTGGGATAGTGTAGTTTTCT+TGG | + | chr1.1:76420152-76420171 | None:intergenic | 40.0% |
! | TCCGAGGTCATAACATTTTC+TGG | - | chr1.1:76420211-76420230 | MS.gene96694:intron | 40.0% |
! | TCTCACAAACATTGACTACC+AGG | - | chr1.1:76420050-76420069 | MS.gene96694:intron | 40.0% |
!! | CAATATACCTGATTTGGCTG+AGG | + | chr1.1:76420705-76420724 | None:intergenic | 40.0% |
!! | GATAATGGAATTTCTGTCCG+AGG | - | chr1.1:76420195-76420214 | MS.gene96694:intron | 40.0% |
!! | GGAGGCATTATAGTAAACTC+AGG | - | chr1.1:76418667-76418686 | MS.gene96694:CDS | 40.0% |
AACTGAAGCCAAGCTGAATG+TGG | + | chr1.1:76418974-76418993 | None:intergenic | 45.0% | |
AATAAAGACGTGGTTGGGAG+TGG | - | chr1.1:76419752-76419771 | MS.gene96694:intron | 45.0% | |
ACAGCCAAAGCAGATAGTAG+AGG | - | chr1.1:76421004-76421023 | MS.gene96694:intron | 45.0% | |
ACCTCGAAAAGAATCTCAGC+CGG | + | chr1.1:76419130-76419149 | None:intergenic | 45.0% | |
ACTCTCATCCAGCAGTTCAA+GGG | - | chr1.1:76420852-76420871 | MS.gene96694:CDS | 45.0% | |
ATAGAGGGTTGGACAGTATC+TGG | - | chr1.1:76418703-76418722 | MS.gene96694:intron | 45.0% | |
ATTTGGCTGAGGATCCAAAC+TGG | + | chr1.1:76420694-76420713 | None:intergenic | 45.0% | |
CAAACGGTTCAGCTAGAGAA+AGG | - | chr1.1:76418814-76418833 | MS.gene96694:CDS | 45.0% | |
CACAACATATATGCAGGGCT+AGG | - | chr1.1:76418470-76418489 | MS.gene96694:CDS | 45.0% | |
CTTGTCCAGTTGGAGTAGTT+TGG | + | chr1.1:76420943-76420962 | None:intergenic | 45.0% | |
GCAGAGCAATAATCCAAGTG+TGG | - | chr1.1:76419514-76419533 | MS.gene96694:CDS | 45.0% | |
GCAGATTTCCCATTTGGATG+TGG | - | chr1.1:76420012-76420031 | MS.gene96694:intron | 45.0% | |
GGTTCATCCCACATCCAAAT+GGG | + | chr1.1:76420023-76420042 | None:intergenic | 45.0% | |
GGTTGGACAGTATCTGGAAA+TGG | - | chr1.1:76418709-76418728 | MS.gene96694:intron | 45.0% | |
TACTCCAACTGGACAAGTTG+TGG | - | chr1.1:76420946-76420965 | MS.gene96694:intron | 45.0% | |
TACTCTCATCCAGCAGTTCA+AGG | - | chr1.1:76420851-76420870 | MS.gene96694:CDS | 45.0% | |
TCAGCCCATATTTCCACACT+TGG | + | chr1.1:76419530-76419549 | None:intergenic | 45.0% | |
TGGTTCATCCCACATCCAAA+TGG | + | chr1.1:76420024-76420043 | None:intergenic | 45.0% | |
TTGTCCACAACTTGTCCAGT+TGG | + | chr1.1:76420953-76420972 | None:intergenic | 45.0% | |
TTTGGATCCTCAGCCAAATC+AGG | - | chr1.1:76420695-76420714 | MS.gene96694:CDS | 45.0% | |
! | GAAACAACAAGGACCGATTC+AGG | + | chr1.1:76419421-76419440 | None:intergenic | 45.0% |
! | GAACCTCAGAGAGCACAATA+TGG | - | chr1.1:76418643-76418662 | MS.gene96694:CDS | 45.0% |
! | GCAAATGAAACAGCATCGGA+AGG | - | chr1.1:76419961-76419980 | MS.gene96694:CDS | 45.0% |
! | TGTCAGGAAAGGGTTTTCAC+AGG | - | chr1.1:76421114-76421133 | MS.gene96694:CDS | 45.0% |
!! | TTGCAAGGCCATTTTGCAAG+TGG | - | chr1.1:76420591-76420610 | MS.gene96694:intron | 45.0% |
!! | TTATGATTATTAATTTAATA+TGG | - | chr1.1:76418551-76418570 | MS.gene96694:CDS | 5.0% |
AGGGCTAGGCGTTCATTCTT+TGG | - | chr1.1:76418484-76418503 | MS.gene96694:CDS | 50.0% | |
AGTTGCAAACTTCTCGAGCC+CGG | - | chr1.1:76419108-76419127 | MS.gene96694:CDS | 50.0% | |
ATGGCTCACAGAAGCCAGTT+TGG | - | chr1.1:76420677-76420696 | MS.gene96694:CDS | 50.0% | |
CCTCCATATTGTGCTCTCTG+AGG | + | chr1.1:76418649-76418668 | None:intergenic | 50.0% | |
CCTCGAAAAGAATCTCAGCC+GGG | + | chr1.1:76419129-76419148 | None:intergenic | 50.0% | |
CGCGGCTTTGCGCAATTTAT+CGG | + | chr1.1:76420280-76420299 | None:intergenic | 50.0% | |
CTGGCTTCTGTGAGCCATAT+TGG | + | chr1.1:76420675-76420694 | None:intergenic | 50.0% | |
CTGTTGAAACCAGCTTGTGC+TGG | + | chr1.1:76420896-76420915 | None:intergenic | 50.0% | |
GCGGCTTTGCGCAATTTATC+GGG | + | chr1.1:76420279-76420298 | None:intergenic | 50.0% | |
GCTTGGCTTCAGTTGAGTGA+AGG | - | chr1.1:76418980-76418999 | MS.gene96694:CDS | 50.0% | |
GGAAGTGAACTTGTGCATGG+TGG | - | chr1.1:76419037-76419056 | MS.gene96694:CDS | 50.0% | |
GGCCATGTGATAGCAAAGCA+TGG | - | chr1.1:76419058-76419077 | MS.gene96694:CDS | 50.0% | |
! | CAGAGAGCACAATATGGAGG+AGG | - | chr1.1:76418649-76418668 | MS.gene96694:CDS | 50.0% |
! | CCTCAGAGAGCACAATATGG+AGG | - | chr1.1:76418646-76418665 | MS.gene96694:CDS | 50.0% |
! | GCAGGCAGAGTACTTTGAAG+AGG | - | chr1.1:76420814-76420833 | MS.gene96694:CDS | 50.0% |
! | TTGGCTGGCCACTTGCAAAA+TGG | + | chr1.1:76420602-76420621 | None:intergenic | 50.0% |
!! | CAAGGCATTGGCAACACAAG+TGG | + | chr1.1:76418603-76418622 | None:intergenic | 50.0% |
TTTGCTGGTCCAGCACAAGC+TGG | - | chr1.1:76420884-76420903 | MS.gene96694:intron | 55.0% | |
! | CCCGGCTGAGATTCTTTTCG+AGG | - | chr1.1:76419126-76419145 | MS.gene96694:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 76418342 | 76421165 | 76418342 | ID=MS.gene96694 |
chr1.1 | mRNA | 76418342 | 76421165 | 76418342 | ID=MS.gene96694.t1;Parent=MS.gene96694 |
chr1.1 | exon | 76421099 | 76421165 | 76421099 | ID=MS.gene96694.t1.exon1;Parent=MS.gene96694.t1 |
chr1.1 | CDS | 76421099 | 76421165 | 76421099 | ID=cds.MS.gene96694.t1;Parent=MS.gene96694.t1 |
chr1.1 | exon | 76420975 | 76421021 | 76420975 | ID=MS.gene96694.t1.exon2;Parent=MS.gene96694.t1 |
chr1.1 | CDS | 76420975 | 76421021 | 76420975 | ID=cds.MS.gene96694.t1;Parent=MS.gene96694.t1 |
chr1.1 | exon | 76420651 | 76420873 | 76420651 | ID=MS.gene96694.t1.exon3;Parent=MS.gene96694.t1 |
chr1.1 | CDS | 76420651 | 76420873 | 76420651 | ID=cds.MS.gene96694.t1;Parent=MS.gene96694.t1 |
chr1.1 | exon | 76420360 | 76420526 | 76420360 | ID=MS.gene96694.t1.exon4;Parent=MS.gene96694.t1 |
chr1.1 | CDS | 76420360 | 76420526 | 76420360 | ID=cds.MS.gene96694.t1;Parent=MS.gene96694.t1 |
chr1.1 | exon | 76419891 | 76419989 | 76419891 | ID=MS.gene96694.t1.exon5;Parent=MS.gene96694.t1 |
chr1.1 | CDS | 76419891 | 76419989 | 76419891 | ID=cds.MS.gene96694.t1;Parent=MS.gene96694.t1 |
chr1.1 | exon | 76418791 | 76419582 | 76418791 | ID=MS.gene96694.t1.exon6;Parent=MS.gene96694.t1 |
chr1.1 | CDS | 76418791 | 76419582 | 76418791 | ID=cds.MS.gene96694.t1;Parent=MS.gene96694.t1 |
chr1.1 | exon | 76418342 | 76418689 | 76418342 | ID=MS.gene96694.t1.exon7;Parent=MS.gene96694.t1 |
chr1.1 | CDS | 76418342 | 76418689 | 76418342 | ID=cds.MS.gene96694.t1;Parent=MS.gene96694.t1 |
Gene Sequence |
Protein sequence |