Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96918.t1 | XP_024627930.1 | 48.8 | 320 | 70 | 2 | 7 | 241 | 1 | 311 | 2.30E-74 | 288.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96918.t1 | A0A396I0R2 | 55.8 | 319 | 56 | 2 | 7 | 240 | 1 | 319 | 7.7e-72 | 280.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056356 | MS.gene96918 | 0.870366 | 1.54E-66 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96918.t1 | MTR_0029s0140 | 80.556 | 72 | 14 | 0 | 86 | 157 | 168 | 239 | 4.66e-39 | 140 |
| MS.gene96918.t1 | MTR_0029s0140 | 60.759 | 79 | 22 | 1 | 7 | 85 | 1 | 70 | 1.84e-18 | 84.0 |
| MS.gene96918.t1 | MTR_7g035425 | 35.443 | 158 | 87 | 5 | 96 | 241 | 179 | 333 | 7.20e-19 | 84.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 72 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCGCTGGTTTAGGCTCTTTC+AGG | 0.183435 | 1.4:+31686061 | MS.gene96918:CDS |
| CCCGCCTATCTTTGGTGAAT+TGG | 0.291684 | 1.4:+31686313 | MS.gene96918:CDS |
| TTGCCCTTGCTCTTTCCATT+AGG | 0.302043 | 1.4:-31685300 | None:intergenic |
| ATAACTGCTATCATCACTTT+TGG | 0.303053 | 1.4:+31686003 | MS.gene96918:CDS |
| TGGTGAATTGGTTAAGTATT+GGG | 0.326447 | 1.4:+31686325 | MS.gene96918:CDS |
| TTGCTCTTTCCATTAGGTTT+CGG | 0.328125 | 1.4:-31685294 | None:intergenic |
| TAATGCAGACCAAGTGTTCT+TGG | 0.346146 | 1.4:+31686165 | MS.gene96918:intron |
| TGGATTGGCCCGCCTATCTT+TGG | 0.360603 | 1.4:+31686305 | MS.gene96918:CDS |
| TCTTCTAGCCAGGGATCACC+TGG | 0.378638 | 1.4:+31685432 | MS.gene96918:CDS |
| CGAGAATCTCTCGGATAATC+CGG | 0.382446 | 1.4:-31685825 | None:intergenic |
| TTGTCTCCTCAAACCGCATA+CGG | 0.400455 | 1.4:-31686268 | None:intergenic |
| ATCTGCTGCATCTTCTAGCC+AGG | 0.410992 | 1.4:+31685422 | MS.gene96918:CDS |
| GAAGAACCGGGCGTCGGAAA+AGG | 0.413034 | 1.4:+31686385 | MS.gene96918:CDS |
| GATTGCTTCAGCAGCCGGTT+TGG | 0.416531 | 1.4:-31685967 | None:intergenic |
| TCGACAAAGCAAAGAAGAAC+CGG | 0.426351 | 1.4:+31686372 | MS.gene96918:CDS |
| TTGGTGAATTGGTTAAGTAT+TGG | 0.427319 | 1.4:+31686324 | MS.gene96918:CDS |
| CAGGAGCAGCTACACTAGCC+TGG | 0.433549 | 1.4:-31685461 | None:intergenic |
| AATGCAGACCAAGTGTTCTT+GGG | 0.435174 | 1.4:+31686166 | MS.gene96918:intron |
| GGAATGCCTCCGAAACCTAA+TGG | 0.442258 | 1.4:+31685285 | MS.gene96918:intron |
| CTCGTCGTCGATTCATCTTA+AGG | 0.445948 | 1.4:+31685844 | MS.gene96918:CDS |
| GAAAGAGCAAGGGCAACAAC+AGG | 0.448713 | 1.4:+31685307 | MS.gene96918:CDS |
| GATCTGATTGCTTCAGCAGC+CGG | 0.463673 | 1.4:-31685972 | None:intergenic |
| GGGAGGACCCAGGTGATCCC+TGG | 0.467266 | 1.4:-31685440 | None:intergenic |
| TTAACCAATTCACCAAAGAT+AGG | 0.468585 | 1.4:-31686317 | None:intergenic |
| CACAGCTTCCCAAGAACACT+TGG | 0.469604 | 1.4:-31686174 | None:intergenic |
| AAGAGCCCGTATGCGGTTTG+AGG | 0.473397 | 1.4:+31686262 | MS.gene96918:CDS |
| AAAAGGGAGGACGCATTCAC+TGG | 0.486499 | 1.4:+31686402 | MS.gene96918:CDS |
| CGAAGAGGGTGGTGGAGAGC+TGG | 0.490661 | 1.4:+31685782 | MS.gene96918:intron |
| GGGATCACCTGGGTCCTCCC+AGG | 0.492872 | 1.4:+31685443 | MS.gene96918:CDS |
| GCGGTATAATACTCACTTAG+TGG | 0.494631 | 1.4:+31685332 | MS.gene96918:CDS |
| TTGGGCGTCTGAGGCGTTCA+AGG | 0.500299 | 1.4:+31686343 | MS.gene96918:CDS |
| AAGAACCGGGCGTCGGAAAA+GGG | 0.501037 | 1.4:+31686386 | MS.gene96918:CDS |
| CTCTTTCCATTAGGTTTCGG+AGG | 0.502358 | 1.4:-31685291 | None:intergenic |
| GCAGTAGAAATGACAGGCAT+CGG | 0.507512 | 1.4:-31685381 | None:intergenic |
| TGAGGAGCAGAAGCCGTCGC+AGG | 0.513097 | 1.4:-31685480 | None:intergenic |
| ATGATAGCAGTTATGAATGA+TGG | 0.523463 | 1.4:-31685994 | None:intergenic |
| GCTTCAGCAGCCGGTTTGGA+AGG | 0.524446 | 1.4:-31685963 | None:intergenic |
| AGACAAGAAAGCGGCCACAT+TGG | 0.524562 | 1.4:+31686285 | MS.gene96918:CDS |
| AGAAAGCGGCCACATTGGAT+TGG | 0.531391 | 1.4:+31686290 | MS.gene96918:CDS |
| TACTGGAGGGCACATGTAAG+TGG | 0.532234 | 1.4:-31685505 | None:intergenic |
| CAGTAGAAATGACAGGCATC+GGG | 0.537420 | 1.4:-31685380 | None:intergenic |
| CTTAGTGGACGCAGCGACAA+AGG | 0.537528 | 1.4:+31685347 | MS.gene96918:CDS |
| AGGAGCAGCTACACTAGCCT+GGG | 0.541346 | 1.4:-31685460 | None:intergenic |
| CCAATTCACCAAAGATAGGC+GGG | 0.544604 | 1.4:-31686313 | None:intergenic |
| TGTCTCCTCAAACCGCATAC+GGG | 0.571839 | 1.4:-31686267 | None:intergenic |
| AATGTGGTCGAAGAGGGTGG+TGG | 0.572688 | 1.4:+31685774 | MS.gene96918:intron |
| TCTGCTGCATCTTCTAGCCA+GGG | 0.572703 | 1.4:+31685423 | MS.gene96918:CDS |
| GCAAGGGCAACAACAGGAAG+CGG | 0.574200 | 1.4:+31685313 | MS.gene96918:CDS |
| GGTTAAGTATTGGGCGTCTG+AGG | 0.575914 | 1.4:+31686334 | MS.gene96918:CDS |
| TAGTGTAGCTGCTCCTGCGA+CGG | 0.577442 | 1.4:+31685467 | MS.gene96918:CDS |
| AGCAAAGAAGAACCGGGCGT+CGG | 0.582886 | 1.4:+31686379 | MS.gene96918:CDS |
| GAGAATCTCTCGGATAATCC+GGG | 0.586945 | 1.4:-31685824 | None:intergenic |
| TGAACTTACGAGTTTCCACT+AGG | 0.589440 | 1.4:-31685867 | None:intergenic |
| GGGCACATGTAAGTGGGATG+AGG | 0.589794 | 1.4:-31685498 | None:intergenic |
| GTAGATGCAGTAGAAATGAC+AGG | 0.591240 | 1.4:-31685387 | None:intergenic |
| GAAACCTAATGGAAAGAGCA+AGG | 0.595131 | 1.4:+31685296 | MS.gene96918:CDS |
| CGATTCATCTTAAGGCCTAG+TGG | 0.601629 | 1.4:+31685852 | MS.gene96918:CDS |
| CGACAAAGCAAAGAAGAACC+GGG | 0.601764 | 1.4:+31686373 | MS.gene96918:CDS |
| ACTGGTGGTTGCTTAAGCAA+CGG | 0.611037 | 1.4:+31686420 | MS.gene96918:CDS |
| TACTTAGAAGAGCCCGTATG+CGG | 0.616606 | 1.4:+31686255 | MS.gene96918:CDS |
| ACCAATTCACCAAAGATAGG+CGG | 0.624368 | 1.4:-31686314 | None:intergenic |
| CTTCTAGCCAGGGATCACCT+GGG | 0.625749 | 1.4:+31685433 | MS.gene96918:CDS |
| AACCGGGCGTCGGAAAAGGG+AGG | 0.634296 | 1.4:+31686389 | MS.gene96918:CDS |
| AATCGACGACGAGAATCTCT+CGG | 0.634346 | 1.4:-31685834 | None:intergenic |
| AAACCTAATGGAAAGAGCAA+GGG | 0.642664 | 1.4:+31685297 | MS.gene96918:CDS |
| ACACTAGCCTGGGAGGACCC+AGG | 0.643294 | 1.4:-31685450 | None:intergenic |
| TTGGAAGACATATGGTGATG+TGG | 0.652180 | 1.4:+31686022 | MS.gene96918:CDS |
| AGCAGCTACACTAGCCTGGG+AGG | 0.655945 | 1.4:-31685457 | None:intergenic |
| AGGGAGGACGCATTCACTGG+TGG | 0.665603 | 1.4:+31686405 | MS.gene96918:CDS |
| ACTGGAGGGCACATGTAAGT+GGG | 0.711086 | 1.4:-31685504 | None:intergenic |
| ATAGGCGGGCCAATCCAATG+TGG | 0.757504 | 1.4:-31686299 | None:intergenic |
| GGTTTGAGGAGACAAGAAAG+CGG | 0.763875 | 1.4:+31686276 | MS.gene96918:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGTTATTGATAAATATCT+AGG | + | chr1.4:31685264-31685283 | MS.gene96918:intron | 15.0% |
| ATGATAGCAGTTATGAATGA+TGG | - | chr1.4:31685997-31686016 | None:intergenic | 30.0% | |
| TGAATATGGTGGTAAATGAT+AGG | - | chr1.4:31685583-31685602 | None:intergenic | 30.0% | |
| TGGTGAATTGGTTAAGTATT+GGG | + | chr1.4:31686325-31686344 | MS.gene96918:CDS | 30.0% | |
| TTAACCAATTCACCAAAGAT+AGG | - | chr1.4:31686320-31686339 | None:intergenic | 30.0% | |
| TTGGTGAATTGGTTAAGTAT+TGG | + | chr1.4:31686324-31686343 | MS.gene96918:CDS | 30.0% | |
| ! | ATAACTGCTATCATCACTTT+TGG | + | chr1.4:31686003-31686022 | MS.gene96918:CDS | 30.0% |
| ! | GTTGTTTAATGATGTTTTCC+CGG | + | chr1.4:31685806-31685825 | MS.gene96918:CDS | 30.0% |
| !!! | TACTACTGGTTTTTTACTAC+TGG | + | chr1.4:31685226-31685245 | MS.gene96918:intron | 30.0% |
| AAACCTAATGGAAAGAGCAA+GGG | + | chr1.4:31685297-31685316 | MS.gene96918:CDS | 35.0% | |
| TATGGTGGTAAATGATAGGT+CGG | - | chr1.4:31685579-31685598 | None:intergenic | 35.0% | |
| TTGCTCTTTCCATTAGGTTT+CGG | - | chr1.4:31685297-31685316 | None:intergenic | 35.0% | |
| ! | ATGATAATGAAAAAGAGCGC+TGG | + | chr1.4:31686045-31686064 | MS.gene96918:CDS | 35.0% |
| ! | GGTTTGAGTCTTTTTACTAC+TGG | + | chr1.4:31685212-31685231 | MS.gene96918:intron | 35.0% |
| ! | TTCGACCACATTTTCTTGTT+GGG | - | chr1.4:31685766-31685785 | None:intergenic | 35.0% |
| ! | TTTGTTGTAGGGAAAAAGGT+GGG | - | chr1.4:31685662-31685681 | None:intergenic | 35.0% |
| !! | ATTTGTTGTAGGGAAAAAGG+TGG | - | chr1.4:31685663-31685682 | None:intergenic | 35.0% |
| !! | CATCACTTTTGGAAGACATA+TGG | + | chr1.4:31686014-31686033 | MS.gene96918:CDS | 35.0% |
| !!! | CAGAGTTGATGTACGTTTTT+CGG | + | chr1.4:31686229-31686248 | MS.gene96918:CDS | 35.0% |
| AATATCCAGGATGTACTGGA+GGG | - | chr1.4:31685521-31685540 | None:intergenic | 40.0% | |
| AATGCAGACCAAGTGTTCTT+GGG | + | chr1.4:31686166-31686185 | MS.gene96918:intron | 40.0% | |
| ACAACCCCAACAAGAAAATG+TGG | + | chr1.4:31685758-31685777 | MS.gene96918:intron | 40.0% | |
| ACAAGAAAATGTGGTCGAAG+AGG | + | chr1.4:31685767-31685786 | MS.gene96918:intron | 40.0% | |
| ACCAATTCACCAAAGATAGG+CGG | - | chr1.4:31686317-31686336 | None:intergenic | 40.0% | |
| CAAGAAAATGTGGTCGAAGA+GGG | + | chr1.4:31685768-31685787 | MS.gene96918:intron | 40.0% | |
| CCAGTACATCCTGGATATTA+TGG | + | chr1.4:31685522-31685541 | MS.gene96918:intron | 40.0% | |
| CCATAATATCCAGGATGTAC+TGG | - | chr1.4:31685525-31685544 | None:intergenic | 40.0% | |
| GAAACCTAATGGAAAGAGCA+AGG | + | chr1.4:31685296-31685315 | MS.gene96918:CDS | 40.0% | |
| GCGGTATAATACTCACTTAG+TGG | + | chr1.4:31685332-31685351 | MS.gene96918:CDS | 40.0% | |
| GTAGATGCAGTAGAAATGAC+AGG | - | chr1.4:31685390-31685409 | None:intergenic | 40.0% | |
| TAATATCCAGGATGTACTGG+AGG | - | chr1.4:31685522-31685541 | None:intergenic | 40.0% | |
| TAATGCAGACCAAGTGTTCT+TGG | + | chr1.4:31686165-31686184 | MS.gene96918:intron | 40.0% | |
| TCGACAAAGCAAAGAAGAAC+CGG | + | chr1.4:31686372-31686391 | MS.gene96918:CDS | 40.0% | |
| TGAACTTACGAGTTTCCACT+AGG | - | chr1.4:31685870-31685889 | None:intergenic | 40.0% | |
| ! | ACATTTTCTTGTTGGGGTTG+TGG | - | chr1.4:31685759-31685778 | None:intergenic | 40.0% |
| ! | CTTCGACCACATTTTCTTGT+TGG | - | chr1.4:31685767-31685786 | None:intergenic | 40.0% |
| ! | TCGACCACATTTTCTTGTTG+GGG | - | chr1.4:31685765-31685784 | None:intergenic | 40.0% |
| ! | TTGGAAGACATATGGTGATG+TGG | + | chr1.4:31686022-31686041 | MS.gene96918:CDS | 40.0% |
| !! | ATGAAAAAGAGCGCTGGTTT+AGG | + | chr1.4:31686051-31686070 | MS.gene96918:CDS | 40.0% |
| !! | ATTTGTTGTTGTTGGGGAAG+GGG | - | chr1.4:31685624-31685643 | None:intergenic | 40.0% |
| !! | GATTTGTTGTTGTTGGGGAA+GGG | - | chr1.4:31685625-31685644 | None:intergenic | 40.0% |
| !! | GGGATTTGTTGTAGGGAAAA+AGG | - | chr1.4:31685666-31685685 | None:intergenic | 40.0% |
| !! | TGGAGGGATTTGTTGTTGTT+GGG | - | chr1.4:31685631-31685650 | None:intergenic | 40.0% |
| !! | TTGTGGAGGGATTTGTTGTA+GGG | - | chr1.4:31685673-31685692 | None:intergenic | 40.0% |
| !! | TTTTGTGGTGGGACTGAATA+TGG | - | chr1.4:31685597-31685616 | None:intergenic | 40.0% |
| !!! | GAAAAAGGTGGGTTTTGTTG+TGG | - | chr1.4:31685651-31685670 | None:intergenic | 40.0% |
| !!! | TGGTGGGTTTTGTTGTTGTT+GGG | - | chr1.4:31685712-31685731 | None:intergenic | 40.0% |
| !!! | TTTTGTTGTTGTTGGGGTTG+TGG | - | chr1.4:31685732-31685751 | None:intergenic | 40.0% |
| AATCGACGACGAGAATCTCT+CGG | - | chr1.4:31685837-31685856 | None:intergenic | 45.0% | |
| ACTGGTGGTTGCTTAAGCAA+CGG | + | chr1.4:31686420-31686439 | MS.gene96918:CDS | 45.0% | |
| ATGGCACCATACCTCCTTAT+GGG | + | chr1.4:31685541-31685560 | MS.gene96918:intron | 45.0% | |
| CAGTAGAAATGACAGGCATC+GGG | - | chr1.4:31685383-31685402 | None:intergenic | 45.0% | |
| CCAATTCACCAAAGATAGGC+GGG | - | chr1.4:31686316-31686335 | None:intergenic | 45.0% | |
| CGACAAAGCAAAGAAGAACC+GGG | + | chr1.4:31686373-31686392 | MS.gene96918:CDS | 45.0% | |
| CGAGAATCTCTCGGATAATC+CGG | - | chr1.4:31685828-31685847 | None:intergenic | 45.0% | |
| CGATTCATCTTAAGGCCTAG+TGG | + | chr1.4:31685852-31685871 | MS.gene96918:CDS | 45.0% | |
| CTCTTTCCATTAGGTTTCGG+AGG | - | chr1.4:31685294-31685313 | None:intergenic | 45.0% | |
| GAGAATCTCTCGGATAATCC+GGG | - | chr1.4:31685827-31685846 | None:intergenic | 45.0% | |
| GCAGTAGAAATGACAGGCAT+CGG | - | chr1.4:31685384-31685403 | None:intergenic | 45.0% | |
| GGTTTGAGGAGACAAGAAAG+CGG | + | chr1.4:31686276-31686295 | MS.gene96918:CDS | 45.0% | |
| GTAAATGATAGGTCGGAGGA+AGG | - | chr1.4:31685572-31685591 | None:intergenic | 45.0% | |
| TACTTAGAAGAGCCCGTATG+CGG | + | chr1.4:31686255-31686274 | MS.gene96918:CDS | 45.0% | |
| TATGGCACCATACCTCCTTA+TGG | + | chr1.4:31685540-31685559 | MS.gene96918:intron | 45.0% | |
| TTGCCCTTGCTCTTTCCATT+AGG | - | chr1.4:31685303-31685322 | None:intergenic | 45.0% | |
| TTGTCTCCTCAAACCGCATA+CGG | - | chr1.4:31686271-31686290 | None:intergenic | 45.0% | |
| TTTCTTGTTGGGGTTGTGGT+GGG | - | chr1.4:31685755-31685774 | None:intergenic | 45.0% | |
| ! | CAGCTTTTTGCCTTCCAAAC+CGG | + | chr1.4:31685953-31685972 | MS.gene96918:intron | 45.0% |
| ! | GTTGTTGTTGGGGAACATGT+GGG | - | chr1.4:31685701-31685720 | None:intergenic | 45.0% |
| ! | TGTTGTTGTTGGGGAACATG+TGG | - | chr1.4:31685702-31685721 | None:intergenic | 45.0% |
| ! | TTTTCTTGTTGGGGTTGTGG+TGG | - | chr1.4:31685756-31685775 | None:intergenic | 45.0% |
| !! | CTCGTCGTCGATTCATCTTA+AGG | + | chr1.4:31685844-31685863 | MS.gene96918:CDS | 45.0% |
| !! | GGAGGGATTTGTTGTTGTTG+GGG | - | chr1.4:31685630-31685649 | None:intergenic | 45.0% |
| !! | GGATTTGTTGTTGTTGGGGA+AGG | - | chr1.4:31685626-31685645 | None:intergenic | 45.0% |
| !! | GGTATGGTGCCATAATATCC+AGG | - | chr1.4:31685534-31685553 | None:intergenic | 45.0% |
| !! | GTGGAGGGATTTGTTGTTGT+TGG | - | chr1.4:31685632-31685651 | None:intergenic | 45.0% |
| !! | GTTGTGGAGGGATTTGTTGT+AGG | - | chr1.4:31685635-31685654 | None:intergenic | 45.0% |
| !!! | AAAGGTGGGTTTTGTTGTGG+AGG | - | chr1.4:31685648-31685667 | None:intergenic | 45.0% |
| !!! | AAGGTGGGTTTTGTTGTGGA+GGG | - | chr1.4:31685647-31685666 | None:intergenic | 45.0% |
| !!! | ACATGTGGGTTTTGTTGTGG+AGG | - | chr1.4:31685687-31685706 | None:intergenic | 45.0% |
| !!! | CATGTGGGTTTTGTTGTGGA+GGG | - | chr1.4:31685686-31685705 | None:intergenic | 45.0% |
| !!! | GGAACATGTGGGTTTTGTTG+TGG | - | chr1.4:31685690-31685709 | None:intergenic | 45.0% |
| !!! | GGTGGGTTTTGTTGTTGTTG+GGG | - | chr1.4:31685711-31685730 | None:intergenic | 45.0% |
| !!! | GTGGTGGGTTTTGTTGTTGT+TGG | - | chr1.4:31685713-31685732 | None:intergenic | 45.0% |
| AAAAGGGAGGACGCATTCAC+TGG | + | chr1.4:31686402-31686421 | MS.gene96918:CDS | 50.0% | |
| AGAAAGCGGCCACATTGGAT+TGG | + | chr1.4:31686290-31686309 | MS.gene96918:CDS | 50.0% | |
| AGACAAGAAAGCGGCCACAT+TGG | + | chr1.4:31686285-31686304 | MS.gene96918:CDS | 50.0% | |
| ATCTGCTGCATCTTCTAGCC+AGG | + | chr1.4:31685422-31685441 | MS.gene96918:CDS | 50.0% | |
| ATGATAGGTCGGAGGAAGGA+AGG | - | chr1.4:31685568-31685587 | None:intergenic | 50.0% | |
| CACAGCTTCCCAAGAACACT+TGG | - | chr1.4:31686177-31686196 | None:intergenic | 50.0% | |
| CCCGCCTATCTTTGGTGAAT+TGG | + | chr1.4:31686313-31686332 | MS.gene96918:CDS | 50.0% | |
| GAAAATGTGGTCGAAGAGGG+TGG | + | chr1.4:31685771-31685790 | MS.gene96918:intron | 50.0% | |
| GAAAGAGCAAGGGCAACAAC+AGG | + | chr1.4:31685307-31685326 | MS.gene96918:CDS | 50.0% | |
| GAAGGTCCCATAAGGAGGTA+TGG | - | chr1.4:31685550-31685569 | None:intergenic | 50.0% | |
| GATCTGATTGCTTCAGCAGC+CGG | - | chr1.4:31685975-31685994 | None:intergenic | 50.0% | |
| GGAATGCCTCCGAAACCTAA+TGG | + | chr1.4:31685285-31685304 | MS.gene96918:intron | 50.0% | |
| GGTGGTAAATGATAGGTCGG+AGG | - | chr1.4:31685576-31685595 | None:intergenic | 50.0% | |
| TCTGCTGCATCTTCTAGCCA+GGG | + | chr1.4:31685423-31685442 | MS.gene96918:CDS | 50.0% | |
| TGTCTCCTCAAACCGCATAC+GGG | - | chr1.4:31686270-31686289 | None:intergenic | 50.0% | |
| ! | ACTGGAGGGCACATGTAAGT+GGG | - | chr1.4:31685507-31685526 | None:intergenic | 50.0% |
| ! | GTTGTTGTTGGGGTTGTGGT+GGG | - | chr1.4:31685728-31685747 | None:intergenic | 50.0% |
| ! | TACTGGAGGGCACATGTAAG+TGG | - | chr1.4:31685508-31685527 | None:intergenic | 50.0% |
| ! | TGTGGTGGGACTGAATATGG+TGG | - | chr1.4:31685594-31685613 | None:intergenic | 50.0% |
| ! | TGTTGTTGTTGGGGTTGTGG+TGG | - | chr1.4:31685729-31685748 | None:intergenic | 50.0% |
| !! | GAAGGGGAAGGTTTTGTGGT+GGG | - | chr1.4:31685608-31685627 | None:intergenic | 50.0% |
| !! | GGTTAAGTATTGGGCGTCTG+AGG | + | chr1.4:31686334-31686353 | MS.gene96918:CDS | 50.0% |
| AAGAGCCCGTATGCGGTTTG+AGG | + | chr1.4:31686262-31686281 | MS.gene96918:CDS | 55.0% | |
| AATGTGGTCGAAGAGGGTGG+TGG | + | chr1.4:31685774-31685793 | MS.gene96918:intron | 55.0% | |
| AGCAAAGAAGAACCGGGCGT+CGG | + | chr1.4:31686379-31686398 | MS.gene96918:CDS | 55.0% | |
| ATAGGCGGGCCAATCCAATG+TGG | - | chr1.4:31686302-31686321 | None:intergenic | 55.0% | |
| ATGTGCCCTCCAGTACATCC+TGG | + | chr1.4:31685513-31685532 | MS.gene96918:intron | 55.0% | |
| CTTCTAGCCAGGGATCACCT+GGG | + | chr1.4:31685433-31685452 | MS.gene96918:CDS | 55.0% | |
| GATTGCTTCAGCAGCCGGTT+TGG | - | chr1.4:31685970-31685989 | None:intergenic | 55.0% | |
| GCAAGGGCAACAACAGGAAG+CGG | + | chr1.4:31685313-31685332 | MS.gene96918:CDS | 55.0% | |
| GGAAGGAAGGTCCCATAAGG+AGG | - | chr1.4:31685555-31685574 | None:intergenic | 55.0% | |
| GGAGGAAGGAAGGTCCCATA+AGG | - | chr1.4:31685558-31685577 | None:intergenic | 55.0% | |
| GGGCACATGTAAGTGGGATG+AGG | - | chr1.4:31685501-31685520 | None:intergenic | 55.0% | |
| TAGTGTAGCTGCTCCTGCGA+CGG | + | chr1.4:31685467-31685486 | MS.gene96918:CDS | 55.0% | |
| TCTTCTAGCCAGGGATCACC+TGG | + | chr1.4:31685432-31685451 | MS.gene96918:CDS | 55.0% | |
| ! | AGGAGCAGCTACACTAGCCT+GGG | - | chr1.4:31685463-31685482 | None:intergenic | 55.0% |
| ! | CTTAGTGGACGCAGCGACAA+AGG | + | chr1.4:31685347-31685366 | MS.gene96918:CDS | 55.0% |
| ! | GTTGTTGTTGGGGAAGGGGA+AGG | - | chr1.4:31685620-31685639 | None:intergenic | 55.0% |
| ! | TGGGGAAGGGGAAGGTTTTG+TGG | - | chr1.4:31685612-31685631 | None:intergenic | 55.0% |
| !! | AAGAACCGGGCGTCGGAAAA+GGG | + | chr1.4:31686386-31686405 | MS.gene96918:CDS | 55.0% |
| !! | GCGCTGGTTTAGGCTCTTTC+AGG | + | chr1.4:31686061-31686080 | MS.gene96918:CDS | 55.0% |
| !! | GGAAGGGGAAGGTTTTGTGG+TGG | - | chr1.4:31685609-31685628 | None:intergenic | 55.0% |
| !! | TGGATTGGCCCGCCTATCTT+TGG | + | chr1.4:31686305-31686324 | MS.gene96918:CDS | 55.0% |
| AGGGAGGACGCATTCACTGG+TGG | + | chr1.4:31686405-31686424 | MS.gene96918:CDS | 60.0% | |
| CAGGAGCAGCTACACTAGCC+TGG | - | chr1.4:31685464-31685483 | None:intergenic | 60.0% | |
| ! | AGCAGCTACACTAGCCTGGG+AGG | - | chr1.4:31685460-31685479 | None:intergenic | 60.0% |
| ! | TTGGGCGTCTGAGGCGTTCA+AGG | + | chr1.4:31686343-31686362 | MS.gene96918:CDS | 60.0% |
| !! | GAAGAACCGGGCGTCGGAAA+AGG | + | chr1.4:31686385-31686404 | MS.gene96918:CDS | 60.0% |
| !! | GCTTCAGCAGCCGGTTTGGA+AGG | - | chr1.4:31685966-31685985 | None:intergenic | 60.0% |
| TGAGGAGCAGAAGCCGTCGC+AGG | - | chr1.4:31685483-31685502 | None:intergenic | 65.0% | |
| ! | ACACTAGCCTGGGAGGACCC+AGG | - | chr1.4:31685453-31685472 | None:intergenic | 65.0% |
| ! | GTCCTCCCTTTTCCGACGCC+CGG | - | chr1.4:31686394-31686413 | None:intergenic | 65.0% |
| !! | AACCGGGCGTCGGAAAAGGG+AGG | + | chr1.4:31686389-31686408 | MS.gene96918:CDS | 65.0% |
| !! | CGAAGAGGGTGGTGGAGAGC+TGG | + | chr1.4:31685782-31685801 | MS.gene96918:intron | 65.0% |
| GGGAGGACCCAGGTGATCCC+TGG | - | chr1.4:31685443-31685462 | None:intergenic | 70.0% | |
| GGGATCACCTGGGTCCTCCC+AGG | + | chr1.4:31685443-31685462 | MS.gene96918:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 31685197 | 31686454 | 31685197 | ID=MS.gene96918 |
| chr1.4 | mRNA | 31685197 | 31686454 | 31685197 | ID=MS.gene96918.t1;Parent=MS.gene96918 |
| chr1.4 | exon | 31685197 | 31685212 | 31685197 | ID=MS.gene96918.t1.exon1;Parent=MS.gene96918.t1 |
| chr1.4 | CDS | 31685197 | 31685212 | 31685197 | ID=cds.MS.gene96918.t1;Parent=MS.gene96918.t1 |
| chr1.4 | exon | 31685286 | 31685524 | 31685286 | ID=MS.gene96918.t1.exon2;Parent=MS.gene96918.t1 |
| chr1.4 | CDS | 31685286 | 31685524 | 31685286 | ID=cds.MS.gene96918.t1;Parent=MS.gene96918.t1 |
| chr1.4 | exon | 31685789 | 31685880 | 31685789 | ID=MS.gene96918.t1.exon3;Parent=MS.gene96918.t1 |
| chr1.4 | CDS | 31685789 | 31685880 | 31685789 | ID=cds.MS.gene96918.t1;Parent=MS.gene96918.t1 |
| chr1.4 | exon | 31685956 | 31686082 | 31685956 | ID=MS.gene96918.t1.exon4;Parent=MS.gene96918.t1 |
| chr1.4 | CDS | 31685956 | 31686082 | 31685956 | ID=cds.MS.gene96918.t1;Parent=MS.gene96918.t1 |
| chr1.4 | exon | 31686173 | 31686454 | 31686173 | ID=MS.gene96918.t1.exon5;Parent=MS.gene96918.t1 |
| chr1.4 | CDS | 31686173 | 31686454 | 31686173 | ID=cds.MS.gene96918.t1;Parent=MS.gene96918.t1 |
| Gene Sequence |
| Protein sequence |
