Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97083.t1 | RHN59588.1 | 97.3 | 330 | 9 | 0 | 1 | 330 | 1 | 330 | 3.40E-179 | 637.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97083.t1 | Q9SV68 | 71.5 | 330 | 93 | 1 | 1 | 330 | 1 | 329 | 4.2e-133 | 475.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97083.t1 | A0A396I494 | 97.3 | 330 | 9 | 0 | 1 | 330 | 1 | 330 | 2.5e-179 | 637.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050883 | MS.gene97083 | 0.811818 | 5.79E-51 | -1.69E-46 |
| MS.gene058171 | MS.gene97083 | 0.815814 | 7.62E-52 | -1.69E-46 |
| MS.gene058172 | MS.gene97083 | 0.812973 | 3.24E-51 | -1.69E-46 |
| MS.gene058173 | MS.gene97083 | 0.807989 | 3.86E-50 | -1.69E-46 |
| MS.gene058175 | MS.gene97083 | 0.806422 | 8.29E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97083.t1 | MTR_4g033205 | 79.091 | 330 | 68 | 1 | 1 | 330 | 1 | 329 | 0.0 | 530 |
| MS.gene97083.t1 | MTR_4g036310 | 78.116 | 329 | 71 | 1 | 1 | 329 | 1 | 328 | 0.0 | 530 |
| MS.gene97083.t1 | MTR_4g032995 | 79.091 | 330 | 68 | 1 | 1 | 330 | 1 | 329 | 0.0 | 528 |
| MS.gene97083.t1 | MTR_4g036260 | 86.957 | 276 | 35 | 1 | 56 | 330 | 33 | 308 | 4.57e-176 | 490 |
| MS.gene97083.t1 | MTR_4g036170 | 71.125 | 329 | 69 | 4 | 1 | 329 | 1 | 303 | 1.34e-161 | 453 |
| MS.gene97083.t1 | MTR_7g055743 | 67.638 | 309 | 99 | 1 | 21 | 329 | 61 | 368 | 3.85e-148 | 422 |
| MS.gene97083.t1 | MTR_8g064610 | 35.380 | 342 | 169 | 12 | 6 | 330 | 76 | 382 | 3.09e-42 | 150 |
| MS.gene97083.t1 | MTR_4g036150 | 88.732 | 71 | 8 | 0 | 1 | 71 | 1 | 71 | 8.12e-41 | 137 |
| MS.gene97083.t1 | MTR_8g035630 | 33.531 | 337 | 181 | 12 | 4 | 328 | 2 | 307 | 1.21e-32 | 124 |
| MS.gene97083.t1 | MTR_8g035880 | 33.531 | 337 | 181 | 12 | 4 | 328 | 2 | 307 | 1.69e-32 | 124 |
| MS.gene97083.t1 | MTR_7g034395 | 35.905 | 337 | 175 | 12 | 6 | 330 | 8 | 315 | 1.03e-31 | 121 |
| MS.gene97083.t1 | MTR_6g012170 | 32.530 | 332 | 183 | 9 | 11 | 330 | 16 | 318 | 1.60e-29 | 115 |
| MS.gene97083.t1 | MTR_2g078520 | 30.029 | 343 | 210 | 10 | 7 | 329 | 27 | 359 | 1.70e-29 | 116 |
| MS.gene97083.t1 | MTR_6g012160 | 31.959 | 291 | 160 | 7 | 26 | 307 | 32 | 293 | 3.01e-24 | 100 |
| MS.gene97083.t1 | MTR_4g050760 | 26.706 | 337 | 200 | 11 | 16 | 328 | 10 | 323 | 1.48e-19 | 88.2 |
| MS.gene97083.t1 | MTR_2g012380 | 26.706 | 337 | 200 | 11 | 16 | 328 | 10 | 323 | 1.48e-19 | 88.2 |
| MS.gene97083.t1 | MTR_4g086400 | 30.357 | 336 | 182 | 15 | 24 | 328 | 166 | 480 | 4.61e-18 | 85.1 |
| MS.gene97083.t1 | MTR_4g086400 | 30.357 | 336 | 182 | 15 | 24 | 328 | 306 | 620 | 5.33e-18 | 85.1 |
| MS.gene97083.t1 | MTR_2g012380 | 30.180 | 222 | 131 | 7 | 16 | 229 | 10 | 215 | 6.96e-18 | 82.4 |
| MS.gene97083.t1 | MTR_2g012420 | 25.994 | 327 | 205 | 9 | 21 | 328 | 15 | 323 | 2.98e-17 | 81.6 |
| MS.gene97083.t1 | MTR_4g086410 | 29.762 | 336 | 184 | 15 | 24 | 328 | 306 | 620 | 2.30e-16 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97083.t1 | AT4G13010 | 71.515 | 330 | 93 | 1 | 1 | 330 | 1 | 329 | 2.74e-168 | 471 |
| MS.gene97083.t1 | AT1G23740 | 34.694 | 343 | 174 | 11 | 4 | 330 | 76 | 384 | 8.80e-40 | 144 |
| MS.gene97083.t1 | AT3G15090 | 30.368 | 326 | 193 | 9 | 26 | 329 | 52 | 365 | 1.74e-30 | 119 |
| MS.gene97083.t1 | AT1G49670 | 29.464 | 336 | 191 | 16 | 19 | 328 | 301 | 616 | 1.33e-17 | 84.0 |
| MS.gene97083.t1 | AT4G21580 | 28.000 | 325 | 203 | 13 | 21 | 329 | 15 | 324 | 1.10e-14 | 74.3 |
| MS.gene97083.t1 | AT1G49670 | 28.000 | 350 | 201 | 16 | 19 | 328 | 301 | 639 | 2.51e-14 | 74.3 |
| MS.gene97083.t1 | AT5G61510 | 26.524 | 328 | 214 | 11 | 16 | 330 | 93 | 406 | 7.40e-13 | 69.3 |
| MS.gene97083.t1 | AT5G61510 | 26.625 | 323 | 210 | 11 | 21 | 330 | 41 | 349 | 3.59e-12 | 67.0 |
Find 71 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTAAAACTTCATTGGTCTT+TGG | 0.259631 | 4.4:-69916332 | None:intergenic |
| TGGCGAGCAGAAGAATATTT+TGG | 0.297261 | 4.4:+69918478 | MS.gene97083:CDS |
| ACGCCTCTCTCAGTCAAATT+AGG | 0.305157 | 4.4:-69918734 | None:intergenic |
| TCCTATGCCGGAGGTGCATC+TGG | 0.321752 | 4.4:+69915853 | MS.gene97083:CDS |
| TTGGTCTTTGGAGTTGGAAT+TGG | 0.325626 | 4.4:-69916320 | None:intergenic |
| CAACTTGATTAAAACTTCAT+TGG | 0.343455 | 4.4:-69916339 | None:intergenic |
| TACGTGGTTGTTCCCTAGTT+TGG | 0.362617 | 4.4:-69918546 | None:intergenic |
| TTAGCATTAATCCACTTGAT+TGG | 0.395868 | 4.4:+69916369 | MS.gene97083:CDS |
| AGCATGGATGGCCATGCAAC+TGG | 0.411554 | 4.4:+69918965 | MS.gene97083:CDS |
| GTTGTTCAGCTTGCCAAACT+AGG | 0.415462 | 4.4:+69918533 | MS.gene97083:CDS |
| ACTTCATTGGTCTTTGGAGT+TGG | 0.417019 | 4.4:-69916326 | None:intergenic |
| AACGGAGGAATTAAGCTTGA+TGG | 0.418660 | 4.4:+69918452 | MS.gene97083:CDS |
| CTCTTCAATGATGTTCCCTC+TGG | 0.419971 | 4.4:-69918644 | None:intergenic |
| TGAGAAAAGCTGAAGATGCT+TGG | 0.421355 | 4.4:+69918936 | MS.gene97083:CDS |
| AGCTGATACTTCAGATGGTC+TGG | 0.427959 | 4.4:-69918372 | None:intergenic |
| ATTGAATTCGTTAAGAGCTT+AGG | 0.430825 | 4.4:+69918593 | MS.gene97083:CDS |
| GAGAAAAGCTGAAGATGCTT+GGG | 0.446124 | 4.4:+69918937 | MS.gene97083:CDS |
| TTCTGAATCTTCCAATCAAG+TGG | 0.467299 | 4.4:-69916380 | None:intergenic |
| TGAGCTGTGATACCGGCTAT+AGG | 0.469356 | 4.4:-69918413 | None:intergenic |
| CTTCAATCCAGATGCACCTC+CGG | 0.472457 | 4.4:-69915860 | None:intergenic |
| GGAATTAAGCTTGATGGGAC+TGG | 0.474637 | 4.4:+69918458 | MS.gene97083:CDS |
| CGCTTGACATCTACAAAATA+CGG | 0.475330 | 4.4:-69918839 | None:intergenic |
| GCAGTAATACATTGCACTAT+CGG | 0.493461 | 4.4:+69918689 | MS.gene97083:CDS |
| CTCGCTCAGTTGCTGAAGGA+TGG | 0.495402 | 4.4:+69918878 | MS.gene97083:CDS |
| ACATCATTGAAGAGTCCATC+TGG | 0.496276 | 4.4:+69918653 | MS.gene97083:CDS |
| GATTCAGGCACTGATGTAGC+AGG | 0.496812 | 4.4:+69917106 | MS.gene97083:intron |
| ACTGCTGCTTCAGGTGGTGT+AGG | 0.500776 | 4.4:+69918503 | MS.gene97083:CDS |
| GGCATCATGAGCTGTGATAC+CGG | 0.507896 | 4.4:-69918420 | None:intergenic |
| TTGTTCAGCTTGCCAAACTA+GGG | 0.517286 | 4.4:+69918534 | MS.gene97083:CDS |
| AGTGAGTCATACAAGGTATG+TGG | 0.519949 | 4.4:-69916442 | None:intergenic |
| AGATGTCAAGCGCGAGGGCA+TGG | 0.520888 | 4.4:+69918850 | MS.gene97083:CDS |
| GTATCAGCTGCTGAAGCTGC+CGG | 0.530209 | 4.4:+69918386 | MS.gene97083:CDS |
| GCTTTAAAATCCTTCACTTG+TGG | 0.532691 | 4.4:-69917148 | None:intergenic |
| GATACCGGCTATAGGTAAAC+CGG | 0.534540 | 4.4:-69918405 | None:intergenic |
| CGGAGGTGCATCTGGATTGA+AGG | 0.534828 | 4.4:+69915861 | MS.gene97083:CDS |
| ACGGAGGAATTAAGCTTGAT+GGG | 0.539799 | 4.4:+69918453 | MS.gene97083:CDS |
| GTGAGTCATACAAGGTATGT+GGG | 0.540113 | 4.4:-69916441 | None:intergenic |
| GATCCTAATTTGACTGAGAG+AGG | 0.541772 | 4.4:+69918731 | MS.gene97083:CDS |
| GCAGGAGAGGTAGTAGAGGT+TGG | 0.545244 | 4.4:+69917124 | MS.gene97083:CDS |
| TCCAGATGCACCTCCGGCAT+AGG | 0.545972 | 4.4:-69915854 | None:intergenic |
| GTTCAGTACAATTCCTATGC+CGG | 0.548444 | 4.4:+69915841 | MS.gene97083:CDS |
| AACAACATTGAACTTAGGCC+AGG | 0.550340 | 4.4:-69918773 | None:intergenic |
| TTGGTAACTGCTGCTTCAGG+TGG | 0.558002 | 4.4:+69918497 | MS.gene97083:CDS |
| GCTTGGGCTAAGAGCATGGA+TGG | 0.569347 | 4.4:+69918953 | MS.gene97083:CDS |
| GTTGTAGTGGATGTAACACC+TGG | 0.570851 | 4.4:+69918755 | MS.gene97083:CDS |
| AGGTGGACTAGCTGAGTTTG+CGG | 0.572988 | 4.4:+69918325 | MS.gene97083:CDS |
| AGATCTCGCTCAGTTGCTGA+AGG | 0.584775 | 4.4:+69918874 | MS.gene97083:CDS |
| TAAGAGCTTAGGCGCTGACG+AGG | 0.584824 | 4.4:+69918604 | MS.gene97083:CDS |
| AGGCACTGATGTAGCAGGAG+AGG | 0.593122 | 4.4:+69917111 | MS.gene97083:intron |
| TTTGTAGATGTCAAGCGCGA+GGG | 0.598828 | 4.4:+69918845 | MS.gene97083:CDS |
| AGATGCTTGGGCTAAGAGCA+TGG | 0.599101 | 4.4:+69918949 | MS.gene97083:CDS |
| ACTTGATTGGAAGATTCAGA+AGG | 0.599896 | 4.4:+69916382 | MS.gene97083:CDS |
| TCAGCAGCTGATACTTCAGA+TGG | 0.602347 | 4.4:-69918377 | None:intergenic |
| CACCACAAGTGGCTGTTACG+TGG | 0.602378 | 4.4:-69918562 | None:intergenic |
| AGAGGTTGGACCACAAGTGA+AGG | 0.605318 | 4.4:+69917138 | MS.gene97083:CDS |
| AATGTTGCGAGCACCACAAG+TGG | 0.610017 | 4.4:-69918573 | None:intergenic |
| GTTGAATGACAGTATGGAGG+TGG | 0.611633 | 4.4:+69918308 | MS.gene97083:intron |
| GACTGAGAGAGGCGTTGTAG+TGG | 0.624466 | 4.4:+69918742 | MS.gene97083:CDS |
| TGTAGCAGGAGAGGTAGTAG+AGG | 0.630162 | 4.4:+69917120 | MS.gene97083:CDS |
| CTTGATTGGAAGATTCAGAA+GGG | 0.632077 | 4.4:+69916383 | MS.gene97083:CDS |
| CAGAAAACAACATTGAACTT+AGG | 0.641043 | 4.4:-69918778 | None:intergenic |
| GCTGCCGGTTTACCTATAGC+CGG | 0.642017 | 4.4:+69918401 | MS.gene97083:CDS |
| TGGACTAGCTGAGTTTGCGG+TGG | 0.647341 | 4.4:+69918328 | MS.gene97083:CDS |
| CAGTACAATTCCTATGCCGG+AGG | 0.652533 | 4.4:+69915844 | MS.gene97083:CDS |
| CTTGACTACAAGACTCCAGA+GGG | 0.657014 | 4.4:+69918629 | MS.gene97083:CDS |
| TGAGTCATACAAGGTATGTG+GGG | 0.666802 | 4.4:-69916440 | None:intergenic |
| TATGTTGAATGACAGTATGG+AGG | 0.695097 | 4.4:+69918305 | MS.gene97083:intron |
| TCTTGACTACAAGACTCCAG+AGG | 0.701587 | 4.4:+69918628 | MS.gene97083:CDS |
| TTAGGATCAAAAGTTGACCA+CGG | 0.710883 | 4.4:-69918716 | None:intergenic |
| AACCACGTAACAGCCACTTG+TGG | 0.711924 | 4.4:+69918560 | MS.gene97083:CDS |
| ATTGCACTATCGGAATACCG+TGG | 0.792393 | 4.4:+69918699 | MS.gene97083:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTCAAACATTTTTTTTAA+AGG | + | chr4.4:69917315-69917334 | MS.gene97083:intron | 10.0% |
| !!! | TTTAAAGGAATTATTTTTTT+TGG | + | chr4.4:69917330-69917349 | MS.gene97083:intron | 10.0% |
| !! | TTAATGATATCATAACATTA+AGG | - | chr4.4:69917062-69917081 | None:intergenic | 15.0% |
| !!! | ATTATTTTCATAAACTATTG+TGG | - | chr4.4:69916903-69916922 | None:intergenic | 15.0% |
| !!! | TTTTTACTTAAATCTTAGTT+TGG | + | chr4.4:69916477-69916496 | MS.gene97083:intron | 15.0% |
| !! | ACATAAAGCAAAATTGAAAT+CGG | - | chr4.4:69918290-69918309 | None:intergenic | 20.0% |
| !! | ACATTTAAATGTGAAGAAAT+GGG | + | chr4.4:69917404-69917423 | MS.gene97083:intron | 20.0% |
| !! | GAAACTTATTCAAATGTAAA+GGG | - | chr4.4:69916264-69916283 | None:intergenic | 20.0% |
| !! | GATTTAAGTAAAAAAGAAGA+TGG | - | chr4.4:69916471-69916490 | None:intergenic | 20.0% |
| !! | TGAAACTTATTCAAATGTAA+AGG | - | chr4.4:69916265-69916284 | None:intergenic | 20.0% |
| ! | AAATGAAAAACAGTAACCTA+AGG | - | chr4.4:69917231-69917250 | None:intergenic | 25.0% |
| ! | ATAGCATTTATCCTACAAAA+AGG | + | chr4.4:69916997-69917016 | MS.gene97083:intron | 25.0% |
| ! | ATATCAATTTCGTCAAATAG+TGG | + | chr4.4:69917925-69917944 | MS.gene97083:intron | 25.0% |
| ! | ATATTGCATATTATATGCAG+GGG | - | chr4.4:69917452-69917471 | None:intergenic | 25.0% |
| ! | ATGATATCATAACATTAAGG+AGG | - | chr4.4:69917059-69917078 | None:intergenic | 25.0% |
| ! | ATTGTGAAATTGTATTGTTG+TGG | + | chr4.4:69917889-69917908 | MS.gene97083:intron | 25.0% |
| ! | CAACTTGATTAAAACTTCAT+TGG | - | chr4.4:69916342-69916361 | None:intergenic | 25.0% |
| ! | CACATTTAAATGTGAAGAAA+TGG | + | chr4.4:69917403-69917422 | MS.gene97083:intron | 25.0% |
| ! | CATTTAAATGTGAAGAAATG+GGG | + | chr4.4:69917405-69917424 | MS.gene97083:intron | 25.0% |
| ! | GATATTGCATATTATATGCA+GGG | - | chr4.4:69917453-69917472 | None:intergenic | 25.0% |
| ! | TAGCATTTATCCTACAAAAA+GGG | + | chr4.4:69916998-69917017 | MS.gene97083:intron | 25.0% |
| ! | TGATATCAGTTAAATGAGTT+TGG | - | chr4.4:69916053-69916072 | None:intergenic | 25.0% |
| ! | TGATATCATAACATTAAGGA+GGG | - | chr4.4:69917058-69917077 | None:intergenic | 25.0% |
| !! | ACTTAAATCTTAGTTTGGAT+TGG | + | chr4.4:69916482-69916501 | MS.gene97083:intron | 25.0% |
| !! | ATTAACATTCCTTTTGATCA+TGG | + | chr4.4:69917077-69917096 | MS.gene97083:intron | 25.0% |
| !! | TTAACATTCCTTTTGATCAT+GGG | + | chr4.4:69917078-69917097 | MS.gene97083:intron | 25.0% |
| !! | TTTAATTAAGCCCTTTTTGT+AGG | - | chr4.4:69917011-69917030 | None:intergenic | 25.0% |
| !!! | AACTTACTTTTTCAAAGAAG+CGG | + | chr4.4:69918810-69918829 | MS.gene97083:CDS | 25.0% |
| !!! | ATTAAAACTTCATTGGTCTT+TGG | - | chr4.4:69916335-69916354 | None:intergenic | 25.0% |
| !!! | CAATGAAGTTTTAATCAAGT+TGG | + | chr4.4:69916340-69916359 | MS.gene97083:CDS | 25.0% |
| !!! | CATTACTGTTTTGTTCTAAT+TGG | + | chr4.4:69917662-69917681 | MS.gene97083:intron | 25.0% |
| !!! | TTTGATTTTTGACTAGTTTG+AGG | - | chr4.4:69915965-69915984 | None:intergenic | 25.0% |
| AAAAACAGTAACCTAAGGAA+GGG | - | chr4.4:69917226-69917245 | None:intergenic | 30.0% | |
| AAACTACATCTGCATATAAG+AGG | - | chr4.4:69917754-69917773 | None:intergenic | 30.0% | |
| AAATTGTATTGTTGTGGAAC+AGG | + | chr4.4:69917895-69917914 | MS.gene97083:intron | 30.0% | |
| AACTACATCTGCATATAAGA+GGG | - | chr4.4:69917753-69917772 | None:intergenic | 30.0% | |
| ATTGAATTCGTTAAGAGCTT+AGG | + | chr4.4:69918593-69918612 | MS.gene97083:CDS | 30.0% | |
| ATTTCTTGATCCACAACTAT+AGG | + | chr4.4:69918194-69918213 | MS.gene97083:intron | 30.0% | |
| CAAATCAATGTTACCAATAG+TGG | - | chr4.4:69918123-69918142 | None:intergenic | 30.0% | |
| CAGAAAACAACATTGAACTT+AGG | - | chr4.4:69918781-69918800 | None:intergenic | 30.0% | |
| CTTTATGTTGAATGACAGTA+TGG | + | chr4.4:69918302-69918321 | MS.gene97083:intron | 30.0% | |
| GAATCTAGGAAAAAAATGGT+AGG | + | chr4.4:69917567-69917586 | MS.gene97083:intron | 30.0% | |
| GGAAATAAGCTGAAAATAGA+TGG | - | chr4.4:69916652-69916671 | None:intergenic | 30.0% | |
| GGATATTGCATATTATATGC+AGG | - | chr4.4:69917454-69917473 | None:intergenic | 30.0% | |
| TACAGAGTTAGATTAGAGAT+AGG | - | chr4.4:69918228-69918247 | None:intergenic | 30.0% | |
| TAGTATACACCTCTATATGA+GGG | - | chr4.4:69917815-69917834 | None:intergenic | 30.0% | |
| TATCAACTAAGCTAAGCTAA+CGG | + | chr4.4:69917475-69917494 | MS.gene97083:intron | 30.0% | |
| TTAGCATTAATCCACTTGAT+TGG | + | chr4.4:69916369-69916388 | MS.gene97083:CDS | 30.0% | |
| TTATCAGTGAGCTAACAAAT+TGG | - | chr4.4:69915926-69915945 | None:intergenic | 30.0% | |
| TTTCTTGATCCACAACTATA+GGG | + | chr4.4:69918195-69918214 | MS.gene97083:intron | 30.0% | |
| ! | AAAAACTAGCTTAAAGGATG+AGG | - | chr4.4:69916020-69916039 | None:intergenic | 30.0% |
| ! | AAAACTAGCTTAAAGGATGA+GGG | - | chr4.4:69916019-69916038 | None:intergenic | 30.0% |
| ! | CATGTCATAAGTTGTTTCAT+TGG | - | chr4.4:69916836-69916855 | None:intergenic | 30.0% |
| ! | GTTTTCATATGCTATCATGT+AGG | - | chr4.4:69916681-69916700 | None:intergenic | 30.0% |
| ! | TTAGCTTAGCTTAGTTGATA+GGG | - | chr4.4:69917475-69917494 | None:intergenic | 30.0% |
| !!! | CATCCTTTAAGCTAGTTTTT+GGG | + | chr4.4:69916020-69916039 | MS.gene97083:intron | 30.0% |
| !!! | GCATCATATTTTTTACCAGA+TGG | - | chr4.4:69918671-69918690 | None:intergenic | 30.0% |
| !!! | TCATCCTTTAAGCTAGTTTT+TGG | + | chr4.4:69916019-69916038 | MS.gene97083:intron | 30.0% |
| !!! | TTTTTGGTTAAGTAGCATAG+TGG | + | chr4.4:69917346-69917365 | MS.gene97083:intron | 30.0% |
| ACTTGATTGGAAGATTCAGA+AGG | + | chr4.4:69916382-69916401 | MS.gene97083:CDS | 35.0% | |
| AGTATACACCTCTATATGAG+GGG | - | chr4.4:69917814-69917833 | None:intergenic | 35.0% | |
| ATCAAAGTCCCATGATCAAA+AGG | - | chr4.4:69917089-69917108 | None:intergenic | 35.0% | |
| ATCAACTAAGCTAAGCTAAC+GGG | + | chr4.4:69917476-69917495 | MS.gene97083:intron | 35.0% | |
| ATTTAACTGATATCAGAGCC+GGG | + | chr4.4:69916058-69916077 | MS.gene97083:intron | 35.0% | |
| CATTTAACTGATATCAGAGC+CGG | + | chr4.4:69916057-69916076 | MS.gene97083:intron | 35.0% | |
| CGCTTGACATCTACAAAATA+CGG | - | chr4.4:69918842-69918861 | None:intergenic | 35.0% | |
| CTTGATTGGAAGATTCAGAA+GGG | + | chr4.4:69916383-69916402 | MS.gene97083:CDS | 35.0% | |
| GAAAAACAGTAACCTAAGGA+AGG | - | chr4.4:69917227-69917246 | None:intergenic | 35.0% | |
| GCACGAATCTAGGAAAAAAA+TGG | + | chr4.4:69917563-69917582 | MS.gene97083:intron | 35.0% | |
| GCAGTAATACATTGCACTAT+CGG | + | chr4.4:69918689-69918708 | MS.gene97083:CDS | 35.0% | |
| GTAGTATACACCTCTATATG+AGG | - | chr4.4:69917816-69917835 | None:intergenic | 35.0% | |
| TATATGGAGGAACACTAGAA+AGG | + | chr4.4:69917708-69917727 | MS.gene97083:intron | 35.0% | |
| TATCTTTCTTTCCCTTCCTT+AGG | + | chr4.4:69917212-69917231 | MS.gene97083:intron | 35.0% | |
| TATGTTGAATGACAGTATGG+AGG | + | chr4.4:69918305-69918324 | MS.gene97083:intron | 35.0% | |
| TTAGGATCAAAAGTTGACCA+CGG | - | chr4.4:69918719-69918738 | None:intergenic | 35.0% | |
| TTCTGAATCTTCCAATCAAG+TGG | - | chr4.4:69916383-69916402 | None:intergenic | 35.0% | |
| ! | AAGCTTAATTCCTCCGTTTT+TGG | - | chr4.4:69918450-69918469 | None:intergenic | 35.0% |
| ! | AGCTTTTCTCAAAGGAAACT+TGG | - | chr4.4:69918927-69918946 | None:intergenic | 35.0% |
| ! | CAATGATTTTTCCAGTTGCA+TGG | - | chr4.4:69918979-69918998 | None:intergenic | 35.0% |
| ! | CAATTCTCTTTGAGCTTGTT+TGG | + | chr4.4:69916546-69916565 | MS.gene97083:intron | 35.0% |
| ! | CATCCCAAAAACTAGCTTAA+AGG | - | chr4.4:69916026-69916045 | None:intergenic | 35.0% |
| ! | GTTAGCTTAGCTTAGTTGAT+AGG | - | chr4.4:69917476-69917495 | None:intergenic | 35.0% |
| !! | ATGGATTAGTGAGTCATACA+AGG | - | chr4.4:69916452-69916471 | None:intergenic | 35.0% |
| !! | GCTTTAAAATCCTTCACTTG+TGG | - | chr4.4:69917151-69917170 | None:intergenic | 35.0% |
| !! | TTTCTAGTCTTACATTGCAC+AGG | + | chr4.4:69916171-69916190 | MS.gene97083:intron | 35.0% |
| !!! | CAAGTGAAGGATTTTAAAGC+TGG | + | chr4.4:69917151-69917170 | MS.gene97083:CDS | 35.0% |
| !!! | TACTTTTTCAAAGAAGCGGT+TGG | + | chr4.4:69918814-69918833 | MS.gene97083:CDS | 35.0% |
| AACAACATTGAACTTAGGCC+AGG | - | chr4.4:69918776-69918795 | None:intergenic | 40.0% | |
| AACGGAGGAATTAAGCTTGA+TGG | + | chr4.4:69918452-69918471 | MS.gene97083:CDS | 40.0% | |
| ACATCATTGAAGAGTCCATC+TGG | + | chr4.4:69918653-69918672 | MS.gene97083:CDS | 40.0% | |
| ACGGAGGAATTAAGCTTGAT+GGG | + | chr4.4:69918453-69918472 | MS.gene97083:CDS | 40.0% | |
| ACTATCCTAGTTTCGCTATC+AGG | + | chr4.4:69917954-69917973 | MS.gene97083:intron | 40.0% | |
| AGTGAGTCATACAAGGTATG+TGG | - | chr4.4:69916445-69916464 | None:intergenic | 40.0% | |
| CAAAGAGAATTGCTTGTGTC+AGG | - | chr4.4:69916538-69916557 | None:intergenic | 40.0% | |
| CATCTGCATATAAGAGGGTA+AGG | - | chr4.4:69917748-69917767 | None:intergenic | 40.0% | |
| CATTAAGGAGGGAAATGAGT+CGG | - | chr4.4:69917047-69917066 | None:intergenic | 40.0% | |
| CTCACTGATAAGAGTTTGAC+TGG | + | chr4.4:69915935-69915954 | MS.gene97083:intron | 40.0% | |
| CTTACATTGCACAGGTTCTT+GGG | + | chr4.4:69916179-69916198 | MS.gene97083:intron | 40.0% | |
| GAGAAAAGCTGAAGATGCTT+GGG | + | chr4.4:69918937-69918956 | MS.gene97083:CDS | 40.0% | |
| GATCCTAATTTGACTGAGAG+AGG | + | chr4.4:69918731-69918750 | MS.gene97083:CDS | 40.0% | |
| GGATCATATCCCTATAGTTG+TGG | - | chr4.4:69918207-69918226 | None:intergenic | 40.0% | |
| GTGAGTCATACAAGGTATGT+GGG | - | chr4.4:69916444-69916463 | None:intergenic | 40.0% | |
| GTTACATCCACTAGCAGAAA+CGG | - | chr4.4:69918004-69918023 | None:intergenic | 40.0% | |
| GTTCAGTACAATTCCTATGC+CGG | + | chr4.4:69915841-69915860 | MS.gene97083:CDS | 40.0% | |
| GTTTCATTGGTATCACACCA+AGG | - | chr4.4:69916823-69916842 | None:intergenic | 40.0% | |
| TCAACTAAGCTAAGCTAACG+GGG | + | chr4.4:69917477-69917496 | MS.gene97083:intron | 40.0% | |
| TCTTACATTGCACAGGTTCT+TGG | + | chr4.4:69916178-69916197 | MS.gene97083:intron | 40.0% | |
| TGAGAAAAGCTGAAGATGCT+TGG | + | chr4.4:69918936-69918955 | MS.gene97083:CDS | 40.0% | |
| TGAGTCATACAAGGTATGTG+GGG | - | chr4.4:69916443-69916462 | None:intergenic | 40.0% | |
| TGATCATGGGACTTTGATTC+AGG | + | chr4.4:69917091-69917110 | MS.gene97083:intron | 40.0% | |
| TGTTTATCGAAGCAAGACCT+TGG | + | chr4.4:69916803-69916822 | MS.gene97083:intron | 40.0% | |
| TTACATCCACTAGCAGAAAC+GGG | - | chr4.4:69918003-69918022 | None:intergenic | 40.0% | |
| TTGTTCAGCTTGCCAAACTA+GGG | + | chr4.4:69918534-69918553 | MS.gene97083:CDS | 40.0% | |
| ! | AACTTTTGCCATGTGTCATC+AGG | + | chr4.4:69917604-69917623 | MS.gene97083:intron | 40.0% |
| ! | GCATCTTCAGCTTTTCTCAA+AGG | - | chr4.4:69918935-69918954 | None:intergenic | 40.0% |
| ! | GTTTCTGCTAGTGGATGTAA+CGG | + | chr4.4:69918003-69918022 | MS.gene97083:intron | 40.0% |
| ! | TGGCGAGCAGAAGAATATTT+TGG | + | chr4.4:69918478-69918497 | MS.gene97083:CDS | 40.0% |
| !! | ACTTCATTGGTCTTTGGAGT+TGG | - | chr4.4:69916329-69916348 | None:intergenic | 40.0% |
| !! | ATTTTGGTAACTGCTGCTTC+AGG | + | chr4.4:69918494-69918513 | MS.gene97083:CDS | 40.0% |
| !! | TGTTACCAATAGTGGACTAC+TGG | - | chr4.4:69918115-69918134 | None:intergenic | 40.0% |
| !! | TTGGTCTTTGGAGTTGGAAT+TGG | - | chr4.4:69916323-69916342 | None:intergenic | 40.0% |
| !!! | AATTCCTCCGTTTTTGGTGA+GGG | - | chr4.4:69918444-69918463 | None:intergenic | 40.0% |
| !!! | TAATTCCTCCGTTTTTGGTG+AGG | - | chr4.4:69918445-69918464 | None:intergenic | 40.0% |
| ACGCCTCTCTCAGTCAAATT+AGG | - | chr4.4:69918737-69918756 | None:intergenic | 45.0% | |
| AGCTGATACTTCAGATGGTC+TGG | - | chr4.4:69918375-69918394 | None:intergenic | 45.0% | |
| AGGTACCAGTAGTCCACTAT+TGG | + | chr4.4:69918107-69918126 | MS.gene97083:intron | 45.0% | |
| ATCCTTTGCCTGATGACACA+TGG | - | chr4.4:69917615-69917634 | None:intergenic | 45.0% | |
| ATGCTATCATGTAGGCTGTG+TGG | - | chr4.4:69916673-69916692 | None:intergenic | 45.0% | |
| ATTGCACTATCGGAATACCG+TGG | + | chr4.4:69918699-69918718 | MS.gene97083:CDS | 45.0% | |
| CATGATGCCCTCACCAAAAA+CGG | + | chr4.4:69918434-69918453 | MS.gene97083:CDS | 45.0% | |
| CCACACTGAAATCCTTAACC+CGG | - | chr4.4:69916079-69916098 | None:intergenic | 45.0% | |
| CGGGTTAAGGATTTCAGTGT+GGG | + | chr4.4:69916077-69916096 | MS.gene97083:intron | 45.0% | |
| CTCTTCAATGATGTTCCCTC+TGG | - | chr4.4:69918647-69918666 | None:intergenic | 45.0% | |
| CTTCATTGCCCCTCATATAG+AGG | + | chr4.4:69917803-69917822 | MS.gene97083:intron | 45.0% | |
| CTTGACTACAAGACTCCAGA+GGG | + | chr4.4:69918629-69918648 | MS.gene97083:CDS | 45.0% | |
| GCATATGTACCACAAGCACA+GGG | - | chr4.4:69918158-69918177 | None:intergenic | 45.0% | |
| GGAATTAAGCTTGATGGGAC+TGG | + | chr4.4:69918458-69918477 | MS.gene97083:CDS | 45.0% | |
| GTGAGTATTACTCAATCGCG+AGG | + | chr4.4:69918087-69918106 | MS.gene97083:intron | 45.0% | |
| GTTGAATGACAGTATGGAGG+TGG | + | chr4.4:69918308-69918327 | MS.gene97083:intron | 45.0% | |
| GTTGTTCAGCTTGCCAAACT+AGG | + | chr4.4:69918533-69918552 | MS.gene97083:CDS | 45.0% | |
| TAAACCAAGTAAGACCGTGG+AGG | + | chr4.4:69917685-69917704 | MS.gene97083:intron | 45.0% | |
| TACGTGGTTGTTCCCTAGTT+TGG | - | chr4.4:69918549-69918568 | None:intergenic | 45.0% | |
| TAGAGCTCACAGTAGCATAG+TGG | + | chr4.4:69917370-69917389 | MS.gene97083:intron | 45.0% | |
| TATACCTCCACGGTCTTACT+TGG | - | chr4.4:69917692-69917711 | None:intergenic | 45.0% | |
| TCAGCAGCTGATACTTCAGA+TGG | - | chr4.4:69918380-69918399 | None:intergenic | 45.0% | |
| TCTTGACTACAAGACTCCAG+AGG | + | chr4.4:69918628-69918647 | MS.gene97083:CDS | 45.0% | |
| TGCATATGTACCACAAGCAC+AGG | - | chr4.4:69918159-69918178 | None:intergenic | 45.0% | |
| TGCATATTATATGCAGGGGC+CGG | - | chr4.4:69917448-69917467 | None:intergenic | 45.0% | |
| TGCTTGTGGTACATATGCAC+TGG | + | chr4.4:69918160-69918179 | MS.gene97083:intron | 45.0% | |
| TGGTAAACCAAGTAAGACCG+TGG | + | chr4.4:69917682-69917701 | MS.gene97083:intron | 45.0% | |
| TGTTCCTCCATATACCTCCA+CGG | - | chr4.4:69917702-69917721 | None:intergenic | 45.0% | |
| TTTGTAGATGTCAAGCGCGA+GGG | + | chr4.4:69918845-69918864 | MS.gene97083:CDS | 45.0% | |
| ! | AGTAAGACCGTGGAGGTATA+TGG | + | chr4.4:69917692-69917711 | MS.gene97083:intron | 45.0% |
| ! | GATACCGGCTATAGGTAAAC+CGG | - | chr4.4:69918408-69918427 | None:intergenic | 45.0% |
| ! | GGTATGTGGGGAAATTTTCG+AGG | - | chr4.4:69916431-69916450 | None:intergenic | 45.0% |
| ! | TACTGCCTGATAGCGAAACT+AGG | - | chr4.4:69917962-69917981 | None:intergenic | 45.0% |
| ! | TTTTGTAGATGTCAAGCGCG+AGG | + | chr4.4:69918844-69918863 | MS.gene97083:CDS | 45.0% |
| !! | GTTGTAGTGGATGTAACACC+TGG | + | chr4.4:69918755-69918774 | MS.gene97083:CDS | 45.0% |
| AACCACGTAACAGCCACTTG+TGG | + | chr4.4:69918560-69918579 | MS.gene97083:CDS | 50.0% | |
| AATGTTGCGAGCACCACAAG+TGG | - | chr4.4:69918576-69918595 | None:intergenic | 50.0% | |
| ACCAACCATCACATCTAGCG+TGG | - | chr4.4:69916117-69916136 | None:intergenic | 50.0% | |
| AGAGGTTGGACCACAAGTGA+AGG | + | chr4.4:69917138-69917157 | MS.gene97083:CDS | 50.0% | |
| AGATCTCGCTCAGTTGCTGA+AGG | + | chr4.4:69918874-69918893 | MS.gene97083:CDS | 50.0% | |
| AGATGCTTGGGCTAAGAGCA+TGG | + | chr4.4:69918949-69918968 | MS.gene97083:CDS | 50.0% | |
| AGGAGGGAAATGAGTCGGTT+CGG | - | chr4.4:69917042-69917061 | None:intergenic | 50.0% | |
| ATCACATCTAGCGTGGGTCT+GGG | - | chr4.4:69916110-69916129 | None:intergenic | 50.0% | |
| CAGTACAATTCCTATGCCGG+AGG | + | chr4.4:69915844-69915863 | MS.gene97083:CDS | 50.0% | |
| CATATTATATGCAGGGGCCG+GGG | - | chr4.4:69917446-69917465 | None:intergenic | 50.0% | |
| CCAACCATCACATCTAGCGT+GGG | - | chr4.4:69916116-69916135 | None:intergenic | 50.0% | |
| CCGGGTTAAGGATTTCAGTG+TGG | + | chr4.4:69916076-69916095 | MS.gene97083:intron | 50.0% | |
| CCTAGATTCGTGCATGAGTG+CGG | - | chr4.4:69917556-69917575 | None:intergenic | 50.0% | |
| CTAGATTCGTGCATGAGTGC+GGG | - | chr4.4:69917555-69917574 | None:intergenic | 50.0% | |
| CTAGCAGAAACGGGAAAAGC+AGG | - | chr4.4:69917994-69918013 | None:intergenic | 50.0% | |
| CTGATATCAGAGCCGGGTTA+AGG | + | chr4.4:69916064-69916083 | MS.gene97083:intron | 50.0% | |
| CTTCAATCCAGATGCACCTC+CGG | - | chr4.4:69915863-69915882 | None:intergenic | 50.0% | |
| GCATATTATATGCAGGGGCC+GGG | - | chr4.4:69917447-69917466 | None:intergenic | 50.0% | |
| GCTAACGGGGATGAAAGGAA+TGG | + | chr4.4:69917490-69917509 | MS.gene97083:intron | 50.0% | |
| GCTAAGCTAACGGGGATGAA+AGG | + | chr4.4:69917485-69917504 | MS.gene97083:intron | 50.0% | |
| GGCATCATGAGCTGTGATAC+CGG | - | chr4.4:69918423-69918442 | None:intergenic | 50.0% | |
| TGCCATGTGTCATCAGGCAA+AGG | + | chr4.4:69917610-69917629 | MS.gene97083:intron | 50.0% | |
| TGTAGCAGGAGAGGTAGTAG+AGG | + | chr4.4:69917120-69917139 | MS.gene97083:CDS | 50.0% | |
| ! | AAGACCGTGGAGGTATATGG+AGG | + | chr4.4:69917695-69917714 | MS.gene97083:intron | 50.0% |
| ! | ATGTGAAGAAATGGGGTGCC+CGG | + | chr4.4:69917412-69917431 | MS.gene97083:intron | 50.0% |
| ! | GCTTTTCCCGTTTCTGCTAG+TGG | + | chr4.4:69917994-69918013 | MS.gene97083:intron | 50.0% |
| ! | TGAGCTGTGATACCGGCTAT+AGG | - | chr4.4:69918416-69918435 | None:intergenic | 50.0% |
| ! | TTGGTAACTGCTGCTTCAGG+TGG | + | chr4.4:69918497-69918516 | MS.gene97083:CDS | 50.0% |
| !! | AGGTGGACTAGCTGAGTTTG+CGG | + | chr4.4:69918325-69918344 | MS.gene97083:CDS | 50.0% |
| !! | GATTCAGGCACTGATGTAGC+AGG | + | chr4.4:69917106-69917125 | MS.gene97083:intron | 50.0% |
| AGCATGGATGGCCATGCAAC+TGG | + | chr4.4:69918965-69918984 | MS.gene97083:CDS | 55.0% | |
| CACCACAAGTGGCTGTTACG+TGG | - | chr4.4:69918565-69918584 | None:intergenic | 55.0% | |
| CAGACCCACGCTAGATGTGA+TGG | + | chr4.4:69916109-69916128 | MS.gene97083:intron | 55.0% | |
| CATCACATCTAGCGTGGGTC+TGG | - | chr4.4:69916111-69916130 | None:intergenic | 55.0% | |
| CATTGCACAGGTTCTTGGGC+TGG | + | chr4.4:69916183-69916202 | MS.gene97083:intron | 55.0% | |
| CCCACGCTAGATGTGATGGT+TGG | + | chr4.4:69916113-69916132 | MS.gene97083:intron | 55.0% | |
| CCGCACTCATGCACGAATCT+AGG | + | chr4.4:69917553-69917572 | MS.gene97083:intron | 55.0% | |
| CTCGCTCAGTTGCTGAAGGA+TGG | + | chr4.4:69918878-69918897 | MS.gene97083:CDS | 55.0% | |
| GATGCCCTCACCAAAAACGG+AGG | + | chr4.4:69918437-69918456 | MS.gene97083:CDS | 55.0% | |
| GCAGGAGAGGTAGTAGAGGT+TGG | + | chr4.4:69917124-69917143 | MS.gene97083:CDS | 55.0% | |
| GTATCAGCTGCTGAAGCTGC+CGG | + | chr4.4:69918386-69918405 | MS.gene97083:CDS | 55.0% | |
| ! | ACTGCTGCTTCAGGTGGTGT+AGG | + | chr4.4:69918503-69918522 | MS.gene97083:CDS | 55.0% |
| ! | CGGAGGTGCATCTGGATTGA+AGG | + | chr4.4:69915861-69915880 | MS.gene97083:CDS | 55.0% |
| ! | GCTTGGGCTAAGAGCATGGA+TGG | + | chr4.4:69918953-69918972 | MS.gene97083:CDS | 55.0% |
| ! | TGTGAAGAAATGGGGTGCCC+GGG | + | chr4.4:69917413-69917432 | MS.gene97083:intron | 55.0% |
| !! | AGGCACTGATGTAGCAGGAG+AGG | + | chr4.4:69917111-69917130 | MS.gene97083:intron | 55.0% |
| !! | GACTGAGAGAGGCGTTGTAG+TGG | + | chr4.4:69918742-69918761 | MS.gene97083:CDS | 55.0% |
| !! | GCTGCCGGTTTACCTATAGC+CGG | + | chr4.4:69918401-69918420 | MS.gene97083:CDS | 55.0% |
| !! | TAAGAGCTTAGGCGCTGACG+AGG | + | chr4.4:69918604-69918623 | MS.gene97083:CDS | 55.0% |
| !! | TGGACTAGCTGAGTTTGCGG+TGG | + | chr4.4:69918328-69918347 | MS.gene97083:CDS | 55.0% |
| AGATGTCAAGCGCGAGGGCA+TGG | + | chr4.4:69918850-69918869 | MS.gene97083:CDS | 60.0% | |
| GCTCTTCTGCCCTGTGCTTG+TGG | + | chr4.4:69918146-69918165 | MS.gene97083:intron | 60.0% | |
| TCCAGATGCACCTCCGGCAT+AGG | - | chr4.4:69915857-69915876 | None:intergenic | 60.0% | |
| ! | GTGAAGAAATGGGGTGCCCG+GGG | + | chr4.4:69917414-69917433 | MS.gene97083:intron | 60.0% |
| ! | TCCTATGCCGGAGGTGCATC+TGG | + | chr4.4:69915853-69915872 | MS.gene97083:CDS | 60.0% |
| AGGGGCCGGGGTTCGAACCC+CGG | - | chr4.4:69917434-69917453 | None:intergenic | 75.0% | |
| GGTGCCCGGGGTTCGAACCC+CGG | + | chr4.4:69917426-69917445 | MS.gene97083:intron | 75.0% | |
| ! | GGGGCCGGGGTTCGAACCCC+GGG | - | chr4.4:69917433-69917452 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 69915817 | 69919009 | 69915817 | ID=MS.gene97083 |
| chr4.4 | mRNA | 69915817 | 69919009 | 69915817 | ID=MS.gene97083.t1;Parent=MS.gene97083 |
| chr4.4 | exon | 69915817 | 69915882 | 69915817 | ID=MS.gene97083.t1.exon1;Parent=MS.gene97083.t1 |
| chr4.4 | CDS | 69915817 | 69915882 | 69915817 | ID=cds.MS.gene97083.t1;Parent=MS.gene97083.t1 |
| chr4.4 | exon | 69916308 | 69916452 | 69916308 | ID=MS.gene97083.t1.exon2;Parent=MS.gene97083.t1 |
| chr4.4 | CDS | 69916308 | 69916452 | 69916308 | ID=cds.MS.gene97083.t1;Parent=MS.gene97083.t1 |
| chr4.4 | exon | 69917113 | 69917204 | 69917113 | ID=MS.gene97083.t1.exon3;Parent=MS.gene97083.t1 |
| chr4.4 | CDS | 69917113 | 69917204 | 69917113 | ID=cds.MS.gene97083.t1;Parent=MS.gene97083.t1 |
| chr4.4 | exon | 69918320 | 69919009 | 69918320 | ID=MS.gene97083.t1.exon4;Parent=MS.gene97083.t1 |
| chr4.4 | CDS | 69918320 | 69919009 | 69918320 | ID=cds.MS.gene97083.t1;Parent=MS.gene97083.t1 |
| Gene Sequence |
| Protein sequence |
