AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050883


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050883.t1 MTR_5g007730 98.715 389 5 0 1 389 1 389 0.0 798
MS.gene050883.t1 MTR_1g098140 98.715 389 5 0 1 389 1 389 0.0 797
MS.gene050883.t1 MTR_7g016720 98.972 389 4 0 1 389 1 389 0.0 796
MS.gene050883.t1 MTR_7g016820 98.715 389 5 0 1 389 1 389 0.0 796
MS.gene050883.t1 MTR_7g016700 98.201 389 7 0 1 389 1 389 0.0 795
MS.gene050883.t1 MTR_1g097935 98.458 389 6 0 1 389 1 389 0.0 795
MS.gene050883.t1 MTR_7g016800 98.458 389 6 0 1 389 1 389 0.0 795
MS.gene050883.t1 MTR_1g097910 98.201 389 7 0 1 389 1 389 0.0 795
MS.gene050883.t1 MTR_7g016780 98.201 389 7 0 1 389 1 389 0.0 793
MS.gene050883.t1 MTR_5g007760 97.429 389 10 0 1 389 1 389 0.0 789
MS.gene050883.t1 MTR_5g007717 96.915 389 12 0 1 389 1 389 0.0 787
MS.gene050883.t1 MTR_5g007713 96.915 389 12 0 1 389 1 389 0.0 786
MS.gene050883.t1 MTR_3g083920 91.237 388 34 0 1 388 1 388 0.0 753
MS.gene050883.t1 MTR_3g083910 90.464 388 37 0 1 388 1 388 0.0 749
MS.gene050883.t1 MTR_2g058470 87.918 389 47 0 1 389 1 389 0.0 721
MS.gene050883.t1 MTR_3g086260 82.216 388 69 0 1 388 1 388 0.0 682
MS.gene050883.t1 MTR_7g084300 80.977 389 74 0 1 389 1 389 0.0 677
MS.gene050883.t1 MTR_7g113405 97.690 303 7 0 87 389 1 303 0.0 607
MS.gene050883.t1 MTR_3g088675 66.324 389 131 0 1 389 1 389 0.0 578
MS.gene050883.t1 MTR_5g007740 81.595 326 60 0 64 389 1 326 0.0 556
MS.gene050883.t1 MTR_5g007723 68.766 397 75 5 12 389 32 398 0.0 534
MS.gene050883.t1 MTR_5g007770 78.000 300 33 2 70 369 1 267 1.57e-167 469
MS.gene050883.t1 MTR_3g088670 48.974 390 185 6 10 388 2 388 5.51e-131 381
MS.gene050883.t1 MTR_4g075560 42.368 380 212 4 11 387 13 388 1.17e-102 309
MS.gene050883.t1 MTR_4g078730 37.802 373 225 2 15 387 24 389 5.15e-94 287
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050883.t1 AT5G13930 82.732 388 66 1 3 389 8 395 0.0 675
MS.gene050883.t1 AT4G34850 40.849 377 219 3 15 389 18 392 8.09e-98 297
MS.gene050883.t1 AT4G00040 39.796 392 224 6 1 387 1 385 1.54e-96 293
MS.gene050883.t1 AT1G02050 39.332 389 225 6 2 387 12 392 2.26e-88 273
MS.gene050883.t1 AT4G34850 40.312 320 188 2 72 389 1 319 2.59e-82 254

Find 98 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATATAGGTTTCTCAATTTC+TGG 0.117134 7.1:-3019100 None:intergenic
CTTGAATGGGGTGTGTTATT+TGG 0.254367 7.1:+3019505 MS.gene050883:CDS
AGAAGGTCCTGCAACCATTT+TGG 0.255937 7.1:+3018200 MS.gene050883:CDS
TACCAACAAGGTTGCTTTGC+AGG 0.283953 7.1:+3018890 MS.gene050883:CDS
AGAGAAGTGCTTAGTGAATA+TGG 0.292804 7.1:+3019394 MS.gene050883:CDS
CTGATTACAACTCAATCTTT+TGG 0.293179 7.1:+3019290 MS.gene050883:CDS
CTTTCAAAATCTCCTCTGTT+AGG 0.305425 7.1:-3018625 None:intergenic
AACCTATATTTGAGATGGTT+TGG 0.308691 7.1:+3019113 MS.gene050883:CDS
CTTGTTGGACAAGCACTATT+TGG 0.314421 7.1:+3019037 MS.gene050883:CDS
TCCTAGTGTTTGTGAATATA+TGG 0.315099 7.1:+3018652 MS.gene050883:CDS
CTTTGTTCAACACAATTTGC+TGG 0.336534 7.1:-3018240 None:intergenic
TGCAGTGCCAATGGCCAAAA+TGG 0.341928 7.1:-3018214 None:intergenic
TGAATATATGGCACCTTCAT+TGG 0.342121 7.1:+3018664 MS.gene050883:CDS
GCTTCGTTTGGCTAAAGATT+TGG 0.342769 7.1:+3018922 MS.gene050883:CDS
TCTACTTGATCTAAAATTGC+AGG 0.345500 7.1:-3019331 None:intergenic
TCAATGGCTCCTTCACTATC+TGG 0.348362 7.1:-3019154 None:intergenic
GGTTTCTCAATTTCTGGTAC+TGG 0.354846 7.1:-3019094 None:intergenic
GCGCAAAACAACAGTTTCTA+TGG 0.360125 7.1:-3019545 None:intergenic
TGGGGTGTGTTATTTGGCTT+TGG 0.362099 7.1:+3019511 MS.gene050883:CDS
AAGTGAGTAATCTTTGACTT+TGG 0.369443 7.1:-3018770 None:intergenic
AGGAGGCACGGTGCTTCGTT+TGG 0.381968 7.1:+3018910 MS.gene050883:CDS
CACCTTCTTAAAGATGTTCC+TGG 0.385004 7.1:+3019208 MS.gene050883:CDS
TCTAAAATTGCAGGGCCACC+AGG 0.423583 7.1:-3019322 None:intergenic
GTGTTATTTGGCTTTGGACC+AGG 0.425222 7.1:+3019517 MS.gene050883:CDS
ACTCACTTGGACAGCCTTGT+TGG 0.426712 7.1:+3019022 MS.gene050883:CDS
AGTTGAAGCTTTCCAACCAT+TGG 0.427784 7.1:+3019261 MS.gene050883:CDS
CCAATGGCCAAAATGGTTGC+AGG 0.434445 7.1:-3018207 None:intergenic
GTCCAAACCATCTCAAATAT+AGG 0.437103 7.1:-3019115 None:intergenic
GTTGAAGCTTTCCAACCATT+GGG 0.438921 7.1:+3019262 MS.gene050883:CDS
AACAGGAGAAGGACTTGAAT+GGG 0.444037 7.1:+3019492 MS.gene050883:CDS
TTACCAACTCACAAAACTCT+TGG 0.448418 7.1:+3018835 MS.gene050883:CDS
CAACAAAGGTGCCCGTGTAT+TGG 0.459562 7.1:+3018952 MS.gene050883:CDS
TACCACCACCATGTCTTGCC+TGG 0.460934 7.1:-3018690 None:intergenic
GGAGCTGCTGCACTAATTGT+TGG 0.461083 7.1:+3019064 MS.gene050883:CDS
AGTGAAGGCTATAAAAGAAT+GGG 0.468743 7.1:+3018742 MS.gene050883:CDS
GCAAGACATGGTGGTGGTAG+AGG 0.469468 7.1:+3018694 MS.gene050883:CDS
TTCACGAAGGTGACCATCAA+TGG 0.471758 7.1:-3019170 None:intergenic
CAAGATGGACTGAAGACAAC+AGG 0.472027 7.1:+3019475 MS.gene050883:CDS
CTCCTGCAAAGCAACCTTGT+TGG 0.478750 7.1:-3018892 None:intergenic
GTGAGTTGGTAATCAGCTCC+AGG 0.479782 7.1:-3018824 None:intergenic
GATAGTGAAGGAGCCATTGA+TGG 0.482535 7.1:+3019157 MS.gene050883:CDS
CTGTCCAAGTGAGTATCACT+AGG 0.483602 7.1:-3019013 None:intergenic
TACCAACTCACAAAACTCTT+GGG 0.483926 7.1:+3018836 MS.gene050883:CDS
ACCTTCTTAAAGATGTTCCT+GGG 0.484500 7.1:+3019209 MS.gene050883:CDS
TGGCACCTTCATTGGATGCC+AGG 0.484824 7.1:+3018672 MS.gene050883:CDS
GATGGTCACCTTCGTGAAGC+TGG 0.486168 7.1:+3019175 MS.gene050883:CDS
AATCAGAAATTCCCAATGGT+TGG 0.496533 7.1:-3019273 None:intergenic
CTGAAATTCGCAAGGCTCAG+AGG 0.501086 7.1:+3018175 MS.gene050883:CDS
CAGTGAAGGCTATAAAAGAA+TGG 0.502364 7.1:+3018741 MS.gene050883:CDS
CAACAGGAGAAGGACTTGAA+TGG 0.502457 7.1:+3019491 MS.gene050883:CDS
TGAGAAACCTATATTTGAGA+TGG 0.507221 7.1:+3019108 MS.gene050883:CDS
AGAAAGAAATCAACTCAAGA+TGG 0.509999 7.1:+3019460 MS.gene050883:CDS
TTAATTGTTTGCACTACAAG+TGG 0.517381 7.1:+3018791 MS.gene050883:CDS
CGGCCCTAGTGATACTCACT+TGG 0.529910 7.1:+3019009 MS.gene050883:CDS
GTCTTCGCCCATATGTGAAA+AGG 0.532629 7.1:+3018858 MS.gene050883:CDS
AGGGAAGGAGGCTGCAGTGA+AGG 0.537534 7.1:+3018727 MS.gene050883:CDS
TGAAATTCGCAAGGCTCAGA+GGG 0.537672 7.1:+3018176 MS.gene050883:CDS
CGCAAGGCTCAGAGGGCAGA+AGG 0.541361 7.1:+3018183 MS.gene050883:CDS
ATTTATACTTACACATGCGT+TGG 0.542387 7.1:-3018329 None:intergenic
ATGTTCTTTGAAACAATCCC+AGG 0.542390 7.1:-3019226 None:intergenic
CAGGAACATCTTTAAGAAGG+TGG 0.551001 7.1:-3019207 None:intergenic
TGCTGGATTTGCAGTGCCAA+TGG 0.555118 7.1:-3018223 None:intergenic
AGGTTGCTTTGCAGGAGGCA+CGG 0.555669 7.1:+3018898 MS.gene050883:CDS
GTGGTAGAGGTACCTAGACT+AGG 0.557229 7.1:+3018707 MS.gene050883:CDS
CTAAAATTGCAGGGCCACCA+GGG 0.563478 7.1:-3019321 None:intergenic
ACAGTTTCTATGGTAAGTCC+TGG 0.566209 7.1:-3019535 None:intergenic
TCCCAGGAACATCTTTAAGA+AGG 0.567535 7.1:-3019210 None:intergenic
ACAAGTGGTGTAGACATGCC+TGG 0.569592 7.1:+3018806 MS.gene050883:CDS
CAAATAGTGCTTGTCCAACA+AGG 0.572762 7.1:-3019036 None:intergenic
GCAGCCTCCTTCCCTAGTCT+AGG 0.573798 7.1:-3018719 None:intergenic
GGACTGAAGACAACAGGAGA+AGG 0.577181 7.1:+3019481 MS.gene050883:CDS
CAGAACAAACAACCAATACA+CGG 0.584319 7.1:-3018964 None:intergenic
GTGATAAATCTATGATCAAG+AGG 0.584564 7.1:+3018591 MS.gene050883:CDS
AGTGAGTATCACTAGGGCCG+CGG 0.585653 7.1:-3019006 None:intergenic
TCTTGCCTGGCATCCAATGA+AGG 0.586158 7.1:-3018677 None:intergenic
GTCACTGCAGTCACATTCCG+CGG 0.589094 7.1:+3018989 MS.gene050883:CDS
TTCACTAAGCACTTCTCTAG+TGG 0.592176 7.1:-3019389 None:intergenic
AGAGGTACCTAGACTAGGGA+AGG 0.600145 7.1:+3018712 MS.gene050883:CDS
CTACTTGATCTAAAATTGCA+GGG 0.601634 7.1:-3019330 None:intergenic
ATTGGATGCCAGGCAAGACA+TGG 0.613066 7.1:+3018682 MS.gene050883:CDS
TGGTAGAGGTACCTAGACTA+GGG 0.618791 7.1:+3018708 MS.gene050883:CDS
GGACAAGCACTATTTGGAGA+CGG 0.624184 7.1:+3019043 MS.gene050883:CDS
GGTACCTAGACTAGGGAAGG+AGG 0.631813 7.1:+3018715 MS.gene050883:CDS
CAACAAGGTTGCTTTGCAGG+AGG 0.634702 7.1:+3018893 MS.gene050883:CDS
GAGTGTATCTGAAATTCGCA+AGG 0.641296 7.1:+3018167 MS.gene050883:CDS
TTGTAATCAGAAATTCCCAA+TGG 0.649608 7.1:-3019277 None:intergenic
AGAACAAACAACCAATACAC+GGG 0.659559 7.1:-3018963 None:intergenic
ACAATTGCTCCAGATAGTGA+AGG 0.659707 7.1:+3019145 MS.gene050883:CDS
GAGATACATGTACCTAACAG+AGG 0.667740 7.1:+3018613 MS.gene050883:CDS
TGTCCAAGTGAGTATCACTA+GGG 0.674277 7.1:-3019012 None:intergenic
TGCCAGGCAAGACATGGTGG+TGG 0.676603 7.1:+3018688 MS.gene050883:CDS
GTGAAGGCTATAAAAGAATG+GGG 0.681481 7.1:+3018743 MS.gene050883:CDS
GCCATATATTCACAAACACT+AGG 0.682483 7.1:-3018653 None:intergenic
GATTTGGCTGAGAACAACAA+AGG 0.683242 7.1:+3018938 MS.gene050883:CDS
ATGTTAGTCCAGCTTCACGA+AGG 0.698828 7.1:-3019183 None:intergenic
AGGTATATGATGTACCAACA+AGG 0.704257 7.1:+3018878 MS.gene050883:CDS
ACAGGAGAAGGACTTGAATG+GGG 0.714424 7.1:+3019493 MS.gene050883:CDS
GGATGCCAGGCAAGACATGG+TGG 0.736388 7.1:+3018685 MS.gene050883:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCAGGAGAATTATATTAAA+TGG - chr7.1:3018379-3018398 None:intergenic 20.0%
!!! GTGATTTTAAAGTAAAAATC+AGG - chr7.1:3018273-3018292 None:intergenic 20.0%
!!! TAGTTCTATATTTATCCATT+TGG - chr7.1:3018493-3018512 None:intergenic 20.0%
! AATATAGGTTTCTCAATTTC+TGG - chr7.1:3019103-3019122 None:intergenic 25.0%
! ATGATATTAGTTCAGCAAAT+TGG - chr7.1:3018551-3018570 None:intergenic 25.0%
! GAAACCAATGACAAAATAAT+GGG - chr7.1:3018521-3018540 None:intergenic 25.0%
! TGAAACCAATGACAAAATAA+TGG - chr7.1:3018522-3018541 None:intergenic 25.0%
! TGATATTAGTTCAGCAAATT+GGG - chr7.1:3018550-3018569 None:intergenic 25.0%
!! ATCATATACCTTTTCACATA+TGG - chr7.1:3018869-3018888 None:intergenic 25.0%
!! TAATAAATTTGCTTGCCAAA+TGG + chr7.1:3018475-3018494 MS.gene050883:intron 25.0%
!! TCATATACCTTTTCACATAT+GGG - chr7.1:3018868-3018887 None:intergenic 25.0%
!! TCTTTATTTGTAAAAGACAC+TGG + chr7.1:3018442-3018461 MS.gene050883:intron 25.0%
AGAAAGAAATCAACTCAAGA+TGG + chr7.1:3019460-3019479 MS.gene050883:CDS 30.0%
AGTGAAGGCTATAAAAGAAT+GGG + chr7.1:3018742-3018761 MS.gene050883:CDS 30.0%
ATCATAGATTTATCACCTGA+AGG - chr7.1:3018587-3018606 None:intergenic 30.0%
ATCCTATCATAATTACCTTC+AGG + chr7.1:3018569-3018588 MS.gene050883:intron 30.0%
ATTTATACTTACACATGCGT+TGG - chr7.1:3018332-3018351 None:intergenic 30.0%
GTGATAAATCTATGATCAAG+AGG + chr7.1:3018591-3018610 MS.gene050883:CDS 30.0%
TCCTAGTGTTTGTGAATATA+TGG + chr7.1:3018652-3018671 MS.gene050883:CDS 30.0%
TGAGAAACCTATATTTGAGA+TGG + chr7.1:3019108-3019127 MS.gene050883:CDS 30.0%
TGGATAAATATAGAACTACC+AGG + chr7.1:3018495-3018514 MS.gene050883:intron 30.0%
TTAATTGTTTGCACTACAAG+TGG + chr7.1:3018791-3018810 MS.gene050883:CDS 30.0%
TTGTAATCAGAAATTCCCAA+TGG - chr7.1:3019280-3019299 None:intergenic 30.0%
! AACCTATATTTGAGATGGTT+TGG + chr7.1:3019113-3019132 MS.gene050883:CDS 30.0%
! AAGTGAGTAATCTTTGACTT+TGG - chr7.1:3018773-3018792 None:intergenic 30.0%
! CTACTTGATCTAAAATTGCA+GGG - chr7.1:3019333-3019352 None:intergenic 30.0%
! CTGATTACAACTCAATCTTT+TGG + chr7.1:3019290-3019309 MS.gene050883:CDS 30.0%
! TCTACTTGATCTAAAATTGC+AGG - chr7.1:3019334-3019353 None:intergenic 30.0%
! TTTTTCATATAACAGCTTGC+AGG - chr7.1:3018406-3018425 None:intergenic 30.0%
AATCAGAAATTCCCAATGGT+TGG - chr7.1:3019276-3019295 None:intergenic 35.0%
ACCTTCTTAAAGATGTTCCT+GGG + chr7.1:3019209-3019228 MS.gene050883:CDS 35.0%
AGAACAAACAACCAATACAC+GGG - chr7.1:3018966-3018985 None:intergenic 35.0%
AGGTATATGATGTACCAACA+AGG + chr7.1:3018878-3018897 MS.gene050883:CDS 35.0%
CACCTGAAGGTAATTATGAT+AGG - chr7.1:3018574-3018593 None:intergenic 35.0%
CAGAACAAACAACCAATACA+CGG - chr7.1:3018967-3018986 None:intergenic 35.0%
CAGTGAAGGCTATAAAAGAA+TGG + chr7.1:3018741-3018760 MS.gene050883:CDS 35.0%
CTTTCAAAATCTCCTCTGTT+AGG - chr7.1:3018628-3018647 None:intergenic 35.0%
CTTTGTTCAACACAATTTGC+TGG - chr7.1:3018243-3018262 None:intergenic 35.0%
GCCATATATTCACAAACACT+AGG - chr7.1:3018656-3018675 None:intergenic 35.0%
GTCCAAACCATCTCAAATAT+AGG - chr7.1:3019118-3019137 None:intergenic 35.0%
GTGAAGGCTATAAAAGAATG+GGG + chr7.1:3018743-3018762 MS.gene050883:CDS 35.0%
TACCAACTCACAAAACTCTT+GGG + chr7.1:3018836-3018855 MS.gene050883:CDS 35.0%
TGAATATATGGCACCTTCAT+TGG + chr7.1:3018664-3018683 MS.gene050883:CDS 35.0%
TTACCAACTCACAAAACTCT+TGG + chr7.1:3018835-3018854 MS.gene050883:CDS 35.0%
TTGTAAAAGACACTGGTGAA+TGG + chr7.1:3018449-3018468 MS.gene050883:intron 35.0%
!! AGAGAAGTGCTTAGTGAATA+TGG + chr7.1:3019394-3019413 MS.gene050883:CDS 35.0%
!! ATGTTCTTTGAAACAATCCC+AGG - chr7.1:3019229-3019248 None:intergenic 35.0%
AACAGGAGAAGGACTTGAAT+GGG + chr7.1:3019492-3019511 MS.gene050883:CDS 40.0%
ACAATTGCTCCAGATAGTGA+AGG + chr7.1:3019145-3019164 MS.gene050883:CDS 40.0%
ACAGTTTCTATGGTAAGTCC+TGG - chr7.1:3019538-3019557 None:intergenic 40.0%
AGTTGAAGCTTTCCAACCAT+TGG + chr7.1:3019261-3019280 MS.gene050883:CDS 40.0%
CAAATAGTGCTTGTCCAACA+AGG - chr7.1:3019039-3019058 None:intergenic 40.0%
CACCTTCTTAAAGATGTTCC+TGG + chr7.1:3019208-3019227 MS.gene050883:CDS 40.0%
CTTGTTGGACAAGCACTATT+TGG + chr7.1:3019037-3019056 MS.gene050883:CDS 40.0%
GAGATACATGTACCTAACAG+AGG + chr7.1:3018613-3018632 MS.gene050883:CDS 40.0%
GATTTGGCTGAGAACAACAA+AGG + chr7.1:3018938-3018957 MS.gene050883:CDS 40.0%
GCGCAAAACAACAGTTTCTA+TGG - chr7.1:3019548-3019567 None:intergenic 40.0%
GCTTCGTTTGGCTAAAGATT+TGG + chr7.1:3018922-3018941 MS.gene050883:CDS 40.0%
GTTGAAGCTTTCCAACCATT+GGG + chr7.1:3019262-3019281 MS.gene050883:CDS 40.0%
TGTCCAAGTGAGTATCACTA+GGG - chr7.1:3019015-3019034 None:intergenic 40.0%
TTCACTAAGCACTTCTCTAG+TGG - chr7.1:3019392-3019411 None:intergenic 40.0%
! CAGGAACATCTTTAAGAAGG+TGG - chr7.1:3019210-3019229 None:intergenic 40.0%
! CTTGAATGGGGTGTGTTATT+TGG + chr7.1:3019505-3019524 MS.gene050883:CDS 40.0%
! GAGTGTATCTGAAATTCGCA+AGG + chr7.1:3018167-3018186 MS.gene050883:CDS 40.0%
! TCCCAGGAACATCTTTAAGA+AGG - chr7.1:3019213-3019232 None:intergenic 40.0%
!! CAATGACAAAATAATGGGCC+TGG - chr7.1:3018516-3018535 None:intergenic 40.0%
!! CAGGCCCATTATTTTGTCAT+TGG + chr7.1:3018514-3018533 MS.gene050883:intron 40.0%
!! GGTTTCTCAATTTCTGGTAC+TGG - chr7.1:3019097-3019116 None:intergenic 40.0%
!! TCTCATCTTTTCAGGCTTCA+AGG - chr7.1:3019368-3019387 None:intergenic 40.0%
ACAGGAGAAGGACTTGAATG+GGG + chr7.1:3019493-3019512 MS.gene050883:CDS 45.0%
ATGTTAGTCCAGCTTCACGA+AGG - chr7.1:3019186-3019205 None:intergenic 45.0%
CAACAGGAGAAGGACTTGAA+TGG + chr7.1:3019491-3019510 MS.gene050883:CDS 45.0%
CTGTCCAAGTGAGTATCACT+AGG - chr7.1:3019016-3019035 None:intergenic 45.0%
GATAGTGAAGGAGCCATTGA+TGG + chr7.1:3019157-3019176 MS.gene050883:CDS 45.0%
GGACAAGCACTATTTGGAGA+CGG + chr7.1:3019043-3019062 MS.gene050883:CDS 45.0%
GTCTTCGCCCATATGTGAAA+AGG + chr7.1:3018858-3018877 MS.gene050883:CDS 45.0%
TCAATGGCTCCTTCACTATC+TGG - chr7.1:3019157-3019176 None:intergenic 45.0%
TGAAATTCGCAAGGCTCAGA+GGG + chr7.1:3018176-3018195 MS.gene050883:CDS 45.0%
TTCACGAAGGTGACCATCAA+TGG - chr7.1:3019173-3019192 None:intergenic 45.0%
! AACAGCTTGCAGGTGTTTTC+AGG - chr7.1:3018396-3018415 None:intergenic 45.0%
! AGAAGGTCCTGCAACCATTT+TGG + chr7.1:3018200-3018219 MS.gene050883:CDS 45.0%
! ATCTTTTGGATTGCACACCC+TGG + chr7.1:3019304-3019323 MS.gene050883:CDS 45.0%
! CTAGTGGCTCTCATCTTTTC+AGG - chr7.1:3019376-3019395 None:intergenic 45.0%
! TACCAACAAGGTTGCTTTGC+AGG + chr7.1:3018890-3018909 MS.gene050883:CDS 45.0%
!! CAAGATGGACTGAAGACAAC+AGG + chr7.1:3019475-3019494 MS.gene050883:CDS 45.0%
!! GACCCAAGAGTTTTGTGAGT+TGG - chr7.1:3018841-3018860 None:intergenic 45.0%
!! GTGTTATTTGGCTTTGGACC+AGG + chr7.1:3019517-3019536 MS.gene050883:CDS 45.0%
!! TGGGGTGTGTTATTTGGCTT+TGG + chr7.1:3019511-3019530 MS.gene050883:CDS 45.0%
!! TGGTAGAGGTACCTAGACTA+GGG + chr7.1:3018708-3018727 MS.gene050883:CDS 45.0%
ACAAGTGGTGTAGACATGCC+TGG + chr7.1:3018806-3018825 MS.gene050883:CDS 50.0%
ATTGGATGCCAGGCAAGACA+TGG + chr7.1:3018682-3018701 MS.gene050883:CDS 50.0%
CCAATGGCCAAAATGGTTGC+AGG - chr7.1:3018210-3018229 None:intergenic 50.0%
CTAAAATTGCAGGGCCACCA+GGG - chr7.1:3019324-3019343 None:intergenic 50.0%
CTCCTGCAAAGCAACCTTGT+TGG - chr7.1:3018895-3018914 None:intergenic 50.0%
CTGAAATTCGCAAGGCTCAG+AGG + chr7.1:3018175-3018194 MS.gene050883:CDS 50.0%
GGACTGAAGACAACAGGAGA+AGG + chr7.1:3019481-3019500 MS.gene050883:CDS 50.0%
GGAGCTGCTGCACTAATTGT+TGG + chr7.1:3019064-3019083 MS.gene050883:CDS 50.0%
TCTTGCCTGGCATCCAATGA+AGG - chr7.1:3018680-3018699 None:intergenic 50.0%
TGCAGTGCCAATGGCCAAAA+TGG - chr7.1:3018217-3018236 None:intergenic 50.0%
TGCTGGATTTGCAGTGCCAA+TGG - chr7.1:3018226-3018245 None:intergenic 50.0%
! ACTCACTTGGACAGCCTTGT+TGG + chr7.1:3019022-3019041 MS.gene050883:CDS 50.0%
! CAACAAGGTTGCTTTGCAGG+AGG + chr7.1:3018893-3018912 MS.gene050883:CDS 50.0%
! TCTAAAATTGCAGGGCCACC+AGG - chr7.1:3019325-3019344 None:intergenic 50.0%
! TTTTGGATTGCACACCCTGG+TGG + chr7.1:3019307-3019326 MS.gene050883:CDS 50.0%
!! AGAGGTACCTAGACTAGGGA+AGG + chr7.1:3018712-3018731 MS.gene050883:CDS 50.0%
!! CAACAAAGGTGCCCGTGTAT+TGG + chr7.1:3018952-3018971 MS.gene050883:CDS 50.0%
!! CCTGCAACCATTTTGGCCAT+TGG + chr7.1:3018207-3018226 MS.gene050883:CDS 50.0%
!! GTGAGTTGGTAATCAGCTCC+AGG - chr7.1:3018827-3018846 None:intergenic 50.0%
!! GTGGTAGAGGTACCTAGACT+AGG + chr7.1:3018707-3018726 MS.gene050883:CDS 50.0%
AGTGAGTATCACTAGGGCCG+CGG - chr7.1:3019009-3019028 None:intergenic 55.0%
CGGCCCTAGTGATACTCACT+TGG + chr7.1:3019009-3019028 MS.gene050883:CDS 55.0%
GATGGTCACCTTCGTGAAGC+TGG + chr7.1:3019175-3019194 MS.gene050883:CDS 55.0%
GGTACCTAGACTAGGGAAGG+AGG + chr7.1:3018715-3018734 MS.gene050883:CDS 55.0%
GTCACTGCAGTCACATTCCG+CGG + chr7.1:3018989-3019008 MS.gene050883:CDS 55.0%
TACCACCACCATGTCTTGCC+TGG - chr7.1:3018693-3018712 None:intergenic 55.0%
TGGCACCTTCATTGGATGCC+AGG + chr7.1:3018672-3018691 MS.gene050883:CDS 55.0%
! AGGTTGCTTTGCAGGAGGCA+CGG + chr7.1:3018898-3018917 MS.gene050883:CDS 55.0%
!! GCAAGACATGGTGGTGGTAG+AGG + chr7.1:3018694-3018713 MS.gene050883:CDS 55.0%
AGGGAAGGAGGCTGCAGTGA+AGG + chr7.1:3018727-3018746 MS.gene050883:CDS 60.0%
GCAGCCTCCTTCCCTAGTCT+AGG - chr7.1:3018722-3018741 None:intergenic 60.0%
GGATGCCAGGCAAGACATGG+TGG + chr7.1:3018685-3018704 MS.gene050883:CDS 60.0%
TGCCAGGCAAGACATGGTGG+TGG + chr7.1:3018688-3018707 MS.gene050883:CDS 60.0%
! AGGAGGCACGGTGCTTCGTT+TGG + chr7.1:3018910-3018929 MS.gene050883:CDS 60.0%
CGCAAGGCTCAGAGGGCAGA+AGG + chr7.1:3018183-3018202 MS.gene050883:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 3018162 3019582 3018162 ID=MS.gene050883
chr7.1 mRNA 3018162 3019582 3018162 ID=MS.gene050883.t1;Parent=MS.gene050883
chr7.1 exon 3018162 3018339 3018162 ID=MS.gene050883.t1.exon1;Parent=MS.gene050883.t1
chr7.1 CDS 3018162 3018339 3018162 ID=cds.MS.gene050883.t1;Parent=MS.gene050883.t1
chr7.1 exon 3018591 3019582 3018591 ID=MS.gene050883.t1.exon2;Parent=MS.gene050883.t1
chr7.1 CDS 3018591 3019582 3018591 ID=cds.MS.gene050883.t1;Parent=MS.gene050883.t1
Gene Sequence

>MS.gene050883

ATGGTGAGTGTATCTGAAATTCGCAAGGCTCAGAGGGCAGAAGGTCCTGCAACCATTTTGGCCATTGGCACTGCAAATCCAGCAAATTGTGTTGAACAAAGTACATATCCTGATTTTTACTTTAAAATCACAAATAGCGAGCACAAGACTGAACTCAAAGAGAAATTCCAACGCATGTGTAAGTATAAATAATAATTTTCTTATTAGATACTTTCCATTTAATATAATTCTCCTGAAAACACCTGCAAGCTGTTATATGAAAAATGATACAGTGCAAATATCTTTATTTGTAAAAGACACTGGTGAATGGTGTTAATAAATTTGCTTGCCAAATGGATAAATATAGAACTACCAGGCCCATTATTTTGTCATTGGTTTCATATCACCCAATTTGCTGAACTAATATCATCCTATCATAATTACCTTCAGGTGATAAATCTATGATCAAGAGGAGATACATGTACCTAACAGAGGAGATTTTGAAAGAGAATCCTAGTGTTTGTGAATATATGGCACCTTCATTGGATGCCAGGCAAGACATGGTGGTGGTAGAGGTACCTAGACTAGGGAAGGAGGCTGCAGTGAAGGCTATAAAAGAATGGGGTCAACCAAAGTCAAAGATTACTCACTTAATTGTTTGCACTACAAGTGGTGTAGACATGCCTGGAGCTGATTACCAACTCACAAAACTCTTGGGTCTTCGCCCATATGTGAAAAGGTATATGATGTACCAACAAGGTTGCTTTGCAGGAGGCACGGTGCTTCGTTTGGCTAAAGATTTGGCTGAGAACAACAAAGGTGCCCGTGTATTGGTTGTTTGTTCTGAAGTCACTGCAGTCACATTCCGCGGCCCTAGTGATACTCACTTGGACAGCCTTGTTGGACAAGCACTATTTGGAGACGGAGCTGCTGCACTAATTGTTGGTTCTGATCCAGTACCAGAAATTGAGAAACCTATATTTGAGATGGTTTGGACTGCACAAACAATTGCTCCAGATAGTGAAGGAGCCATTGATGGTCACCTTCGTGAAGCTGGACTAACATTCCACCTTCTTAAAGATGTTCCTGGGATTGTTTCAAAGAACATTGATAAAGCATTAGTTGAAGCTTTCCAACCATTGGGAATTTCTGATTACAACTCAATCTTTTGGATTGCACACCCTGGTGGCCCTGCAATTTTAGATCAAGTAGAGCAAAAGTTAGCCTTGAAGCCTGAAAAGATGAGAGCCACTAGAGAAGTGCTTAGTGAATATGGAAATATGTCAAGTGCATGTGTTTTGTTTATCTTAGATGAAATGAGAAAGAAATCAACTCAAGATGGACTGAAGACAACAGGAGAAGGACTTGAATGGGGTGTGTTATTTGGCTTTGGACCAGGACTTACCATAGAAACTGTTGTTTTGCGCAGTGTCGCTATATGA

Protein sequence

>MS.gene050883.t1

MVSVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKSMIKRRYMYLTEEILKENPSVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNIDKALVEAFQPLGISDYNSIFWIAHPGGPAILDQVEQKLALKPEKMRATREVLSEYGNMSSACVLFILDEMRKKSTQDGLKTTGEGLEWGVLFGFGPGLTIETVVLRSVAI