AlfalfaGEDB | MS.gene050883

M. sativa cultivar XinJiangDaYe / MS.gene050883

KEGG: K00660
GO: GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009058 GO:0016740 GO:0016746 GO:0016747
PFAM: PF00195.22 PF02797.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050883.t1	P30075.2	100	389	0	0	1	389	1	389	3.00E-222	780.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050883.t1	P30075	100.0	389	0	0	1	389	1	389	7.2e-225	780.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050883.t1	G7K6H2	98.7	389	5	0	1	389	1	389	5.8e-220	772.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene050883	-0.819607	1.06E-52	-1.69E-46
MS.gene049181	MS.gene050883	0.820434	6.87E-53	-1.69E-46
MS.gene049222	MS.gene050883	-0.802323	5.92E-49	-1.69E-46
MS.gene049232	MS.gene050883	-0.819216	1.30E-52	-1.69E-46
MS.gene049259	MS.gene050883	0.819681	1.02E-52	-1.69E-46
MS.gene049281	MS.gene050883	0.836373	9.72E-57	-1.69E-46
MS.gene049285	MS.gene050883	-0.815558	8.69E-52	-1.69E-46
MS.gene049312	MS.gene050883	0.813016	3.17E-51	-1.69E-46
MS.gene049320	MS.gene050883	-0.846743	1.79E-59	-1.69E-46
MS.gene049483	MS.gene050883	0.827895	1.22E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	bit score
MS.gene050883.t1	MTR_5g007730	98.715	389	5	1	389	1	389	798
MS.gene050883.t1	MTR_1g098140	98.715	389	5	1	389	1	389	797
MS.gene050883.t1	MTR_7g016720	98.972	389	4	1	389	1	389	796
MS.gene050883.t1	MTR_7g016820	98.715	389	5	1	389	1	389	796
MS.gene050883.t1	MTR_7g016700	98.201	389	7	1	389	1	389	795
MS.gene050883.t1	MTR_1g097935	98.458	389	6	1	389	1	389	795
MS.gene050883.t1	MTR_7g016800	98.458	389	6	1	389	1	389	795
MS.gene050883.t1	MTR_1g097910	98.201	389	7	1	389	1	389	795
MS.gene050883.t1	MTR_7g016780	98.201	389	7	1	389	1	389	793
MS.gene050883.t1	MTR_5g007760	97.429	389	10	1	389	1	389	789

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050883.t1	AT5G13930	82.732	388	66	1	3	389	8	395	0.0	675
MS.gene050883.t1	AT4G34850	40.849	377	219	3	15	389	18	392	8.09e-98	297
MS.gene050883.t1	AT4G00040	39.796	392	224	6	1	387	1	385	1.54e-96	293
MS.gene050883.t1	AT1G02050	39.332	389	225	6	2	387	12	392	2.26e-88	273
MS.gene050883.t1	AT4G34850	40.312	320	188	2	72	389	1	319	2.59e-82	254

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Find 98 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAGGAGAAGGACTTGAAT+GGG	0.444037	7.1:+3019492	MS.gene050883:CDS
AACCTATATTTGAGATGGTT+TGG	0.308691	7.1:+3019113	MS.gene050883:CDS
AAGTGAGTAATCTTTGACTT+TGG	0.369443	7.1:-3018770	None:intergenic
AATATAGGTTTCTCAATTTC+TGG	0.117134	7.1:-3019100	None:intergenic
AATCAGAAATTCCCAATGGT+TGG	0.496533	7.1:-3019273	None:intergenic
ACAAGTGGTGTAGACATGCC+TGG	0.569592	7.1:+3018806	MS.gene050883:CDS
ACAATTGCTCCAGATAGTGA+AGG	0.659707	7.1:+3019145	MS.gene050883:CDS
ACAGGAGAAGGACTTGAATG+GGG	0.714424	7.1:+3019493	MS.gene050883:CDS
ACAGTTTCTATGGTAAGTCC+TGG	0.566209	7.1:-3019535	None:intergenic
ACCTTCTTAAAGATGTTCCT+GGG	0.484500	7.1:+3019209	MS.gene050883:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAAAGAAATCAACTCAAGA+TGG	+	chr7.1:3019460-3019479	MS.gene050883:CDS	30.0%
AGTGAAGGCTATAAAAGAAT+GGG	+	chr7.1:3018742-3018761	MS.gene050883:CDS	30.0%
ATCATAGATTTATCACCTGA+AGG	-	chr7.1:3018587-3018606	None:intergenic	30.0%
ATCCTATCATAATTACCTTC+AGG	+	chr7.1:3018569-3018588	MS.gene050883:intron	30.0%
ATTTATACTTACACATGCGT+TGG	-	chr7.1:3018332-3018351	None:intergenic	30.0%
GTGATAAATCTATGATCAAG+AGG	+	chr7.1:3018591-3018610	MS.gene050883:CDS	30.0%
TCCTAGTGTTTGTGAATATA+TGG	+	chr7.1:3018652-3018671	MS.gene050883:CDS	30.0%
TGAGAAACCTATATTTGAGA+TGG	+	chr7.1:3019108-3019127	MS.gene050883:CDS	30.0%
TGGATAAATATAGAACTACC+AGG	+	chr7.1:3018495-3018514	MS.gene050883:intron	30.0%
TTAATTGTTTGCACTACAAG+TGG	+	chr7.1:3018791-3018810	MS.gene050883:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	3018162	3019582	3018162	ID=MS.gene050883
chr7.1	mRNA	3018162	3019582	3018162	ID=MS.gene050883.t1;Parent=MS.gene050883
chr7.1	exon	3018162	3018339	3018162	ID=MS.gene050883.t1.exon1;Parent=MS.gene050883.t1
chr7.1	CDS	3018162	3018339	3018162	ID=cds.MS.gene050883.t1;Parent=MS.gene050883.t1
chr7.1	exon	3018591	3019582	3018591	ID=MS.gene050883.t1.exon2;Parent=MS.gene050883.t1
chr7.1	CDS	3018591	3019582	3018591	ID=cds.MS.gene050883.t1;Parent=MS.gene050883.t1

Gene Sequence

>MS.gene050883

ATGGTGAGTGTATCTGAAATTCGCAAGGCTCAGAGGGCAGAAGGTCCTGCAACCATTTTGGCCATTGGCACTGCAAATCCAGCAAATTGTGTTGAACAAAGTACATATCCTGATTTTTACTTTAAAATCACAAATAGCGAGCACAAGACTGAACTCAAAGAGAAATTCCAACGCATGTGTAAGTATAAATAATAATTTTCTTATTAGATACTTTCCATTTAATATAATTCTCCTGAAAACACCTGCAAGCTGTTATATGAAAAATGATACAGTGCAAATATCTTTATTTGTAAAAGACACTGGTGAATGGTGTTAATAAATTTGCTTGCCAAATGGATAAATATAGAACTACCAGGCCCATTATTTTGTCATTGGTTTCATATCACCCAATTTGCTGAACTAATATCATCCTATCATAATTACCTTCAGGTGATAAATCTATGATCAAGAGGAGATACATGTACCTAACAGAGGAGATTTTGAAAGAGAATCCTAGTGTTTGTGAATATATGGCACCTTCATTGGATGCCAGGCAAGACATGGTGGTGGTAGAGGTACCTAGACTAGGGAAGGAGGCTGCAGTGAAGGCTATAAAAGAATGGGGTCAACCAAAGTCAAAGATTACTCACTTAATTGTTTGCACTACAAGTGGTGTAGACATGCCTGGAGCTGATTACCAACTCACAAAACTCTTGGGTCTTCGCCCATATGTGAAAAGGTATATGATGTACCAACAAGGTTGCTTTGCAGGAGGCACGGTGCTTCGTTTGGCTAAAGATTTGGCTGAGAACAACAAAGGTGCCCGTGTATTGGTTGTTTGTTCTGAAGTCACTGCAGTCACATTCCGCGGCCCTAGTGATACTCACTTGGACAGCCTTGTTGGACAAGCACTATTTGGAGACGGAGCTGCTGCACTAATTGTTGGTTCTGATCCAGTACCAGAAATTGAGAAACCTATATTTGAGATGGTTTGGACTGCACAAACAATTGCTCCAGATAGTGAAGGAGCCATTGATGGTCACCTTCGTGAAGCTGGACTAACATTCCACCTTCTTAAAGATGTTCCTGGGATTGTTTCAAAGAACATTGATAAAGCATTAGTTGAAGCTTTCCAACCATTGGGAATTTCTGATTACAACTCAATCTTTTGGATTGCACACCCTGGTGGCCCTGCAATTTTAGATCAAGTAGAGCAAAAGTTAGCCTTGAAGCCTGAAAAGATGAGAGCCACTAGAGAAGTGCTTAGTGAATATGGAAATATGTCAAGTGCATGTGTTTTGTTTATCTTAGATGAAATGAGAAAGAAATCAACTCAAGATGGACTGAAGACAACAGGAGAAGGACTTGAATGGGGTGTGTTATTTGGCTTTGGACCAGGACTTACCATAGAAACTGTTGTTTTGCGCAGTGTCGCTATATGA

Protein sequence

>MS.gene050883.t1

MVSVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKSMIKRRYMYLTEEILKENPSVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNIDKALVEAFQPLGISDYNSIFWIAHPGGPAILDQVEQKLALKPEKMRATREVLSEYGNMSSACVLFILDEMRKKSTQDGLKTTGEGLEWGVLFGFGPGLTIETVVLRSVAI