Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97190.t1 | XP_003621402.1 | 77.8 | 418 | 80 | 4 | 25 | 435 | 24 | 435 | 6.90E-127 | 464.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97190.t1 | Q9LIB3 | 33.1 | 287 | 137 | 6 | 92 | 361 | 96 | 344 | 9.4e-24 | 112.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97190.t1 | G7L570 | 77.8 | 418 | 80 | 4 | 25 | 435 | 24 | 435 | 5.0e-127 | 464.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058827 | MS.gene97190 | 0.808704 | 2.72E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97190.t1 | MTR_7g012940 | 92.326 | 417 | 19 | 4 | 26 | 435 | 25 | 435 | 0.0 | 709 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97190.t1 | AT3G29310 | 33.811 | 349 | 173 | 13 | 9 | 341 | 15 | 321 | 2.89e-37 | 143 |
Find 113 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCAAATTGTGTAAGGTTTA+TGG | 0.131706 | 7.3:+84938824 | MS.gene97190:CDS |
| TGATAGATGCAAGTTGTTTA+AGG | 0.193783 | 7.3:-84937718 | None:intergenic |
| TGCTCCATTGCCACTTAAAA+TGG | 0.217047 | 7.3:+84939270 | MS.gene97190:CDS |
| TGATGAAGGGTTTGTGATTT+GGG | 0.218801 | 7.3:-84937524 | None:intergenic |
| TGGGTTGGAGGAGGTGGTGG+TGG | 0.257478 | 7.3:-84937335 | None:intergenic |
| TTCTCATCATCATCACCTTC+TGG | 0.268545 | 7.3:-84938758 | None:intergenic |
| GTTGGAGGAGGTGGTGGTGG+TGG | 0.273057 | 7.3:-84937332 | None:intergenic |
| GATGGGGTGGTTGTGGTGTG+GGG | 0.278446 | 7.3:-84937391 | None:intergenic |
| GGAGGAGGTGGTGGTGGTGG+AGG | 0.285241 | 7.3:-84937329 | None:intergenic |
| CATCAAACTTGATTCAATTC+AGG | 0.291591 | 7.3:+84937829 | MS.gene97190:CDS |
| ATGATGAAGGGTTTGTGATT+TGG | 0.301555 | 7.3:-84937525 | None:intergenic |
| AAGATGGGGTGGTTGTGGTG+TGG | 0.309946 | 7.3:-84937393 | None:intergenic |
| GAGGTTGGTGGTGGCTGTGA+TGG | 0.311859 | 7.3:-84937310 | None:intergenic |
| GTGGTGGTGGTGGAGGTTGG+TGG | 0.319503 | 7.3:-84937322 | None:intergenic |
| GAGGTGGTGGTGGTGGAGGT+TGG | 0.323697 | 7.3:-84937325 | None:intergenic |
| GTGGTGGTGGAGGTTGGTGG+TGG | 0.332471 | 7.3:-84937319 | None:intergenic |
| AGATGGGGTGGTTGTGGTGT+GGG | 0.335949 | 7.3:-84937392 | None:intergenic |
| CAATGGGTTGGAGGAGGTGG+TGG | 0.351890 | 7.3:-84937338 | None:intergenic |
| GGGGTGTAGCATGGGTAAGA+GGG | 0.352158 | 7.3:-84937371 | None:intergenic |
| AAGGTCCATTAGTAGAGATT+TGG | 0.356909 | 7.3:+84938628 | MS.gene97190:CDS |
| ATGGGGTGGTTGTGGTGTGG+GGG | 0.370454 | 7.3:-84937390 | None:intergenic |
| GGGTGTAGCATGGGTAAGAG+GGG | 0.380958 | 7.3:-84937370 | None:intergenic |
| CTGAACCAAATCTCTACTAA+TGG | 0.382106 | 7.3:-84938633 | None:intergenic |
| GGAAAGAACGGAAATGGGTT+TGG | 0.385477 | 7.3:-84937667 | None:intergenic |
| AGATGTTGTGGACACTTCTC+AGG | 0.389176 | 7.3:+84939129 | MS.gene97190:CDS |
| GAACGAGGAAAGAACGGAAA+TGG | 0.391524 | 7.3:-84937673 | None:intergenic |
| GTGCAGTAGCAATGGGTTGG+AGG | 0.393924 | 7.3:-84937347 | None:intergenic |
| GTCGTGTTGTGGAGAAAGAT+GGG | 0.404514 | 7.3:-84937408 | None:intergenic |
| GTTGGTGGTGGCTGTGATGG+TGG | 0.408088 | 7.3:-84937307 | None:intergenic |
| GGAGAAAGATGGGGTGGTTG+TGG | 0.411329 | 7.3:-84937398 | None:intergenic |
| TAGCAATGGGTTGGAGGAGG+TGG | 0.415086 | 7.3:-84937341 | None:intergenic |
| AGAAAGGAGGATGGAGGAAA+TGG | 0.423348 | 7.3:-84937444 | None:intergenic |
| GAAGATTAGCAAATTGTGTA+AGG | 0.423404 | 7.3:+84938817 | MS.gene97190:CDS |
| CTCGCCTTGGTCATCATTTG+AGG | 0.425827 | 7.3:-84939077 | None:intergenic |
| AAAGAGCTGGAAAATCGAAA+TGG | 0.431350 | 7.3:-84937784 | None:intergenic |
| GTTGATTGAGGGAAGATTCA+AGG | 0.442554 | 7.3:-84937595 | None:intergenic |
| GGTCGTGTTGTGGAGAAAGA+TGG | 0.442953 | 7.3:-84937409 | None:intergenic |
| GGCTGTGATGGTGGTTGTAG+TGG | 0.443051 | 7.3:-84937298 | None:intergenic |
| GGAGAGAAGAGAGTGTAGAT+TGG | 0.446189 | 7.3:-84937556 | None:intergenic |
| AACGAGGAAAGAACGGAAAT+GGG | 0.452174 | 7.3:-84937672 | None:intergenic |
| AGAAGCTGTTGAAGAATTTG+AGG | 0.452656 | 7.3:+84938783 | MS.gene97190:CDS |
| GGTGGTTGAGTTGTGGAGAA+AGG | 0.452850 | 7.3:-84937460 | None:intergenic |
| GGTGTAGCATGGGTAAGAGG+GGG | 0.467114 | 7.3:-84937369 | None:intergenic |
| TGGAGAAGGTTTAGCGAATG+AGG | 0.477760 | 7.3:+84938853 | MS.gene97190:CDS |
| CAATGATCGTGGATGGGAAA+AGG | 0.480914 | 7.3:+84938609 | MS.gene97190:CDS |
| AGTGTGAGATTTGCAGAGAA+TGG | 0.482476 | 7.3:+84939004 | MS.gene97190:CDS |
| TGTAAGGTTTATGGAGATGA+TGG | 0.484958 | 7.3:+84938833 | MS.gene97190:CDS |
| GAAGGGTTTGTGATTTGGGG+TGG | 0.485747 | 7.3:-84937520 | None:intergenic |
| GATGAGTTTGATGTTGATTG+AGG | 0.494626 | 7.3:-84937607 | None:intergenic |
| CAGAGAACAAAATCTTCTCT+TGG | 0.499499 | 7.3:-84939249 | None:intergenic |
| GAAGCTGTTGAAGAATTTGA+GGG | 0.504399 | 7.3:+84938784 | MS.gene97190:CDS |
| TGGTGTCTTTGTTCAAAGGC+AGG | 0.507089 | 7.3:+84938958 | MS.gene97190:CDS |
| AAAATGGTGTCTTTGTTCAA+AGG | 0.507657 | 7.3:+84938954 | MS.gene97190:CDS |
| GCGGTAAAGAGTTCGAGGTC+TGG | 0.513210 | 7.3:+84938710 | MS.gene97190:CDS |
| ATCTACGAACGAGGAAAGAA+CGG | 0.513538 | 7.3:-84937679 | None:intergenic |
| TAGCACAAGAACTTGTGAAT+CGG | 0.513547 | 7.3:+84939045 | MS.gene97190:CDS |
| GGTGGTCGTGTACGAGGTTG+TGG | 0.516181 | 7.3:-84937490 | None:intergenic |
| AAGAGCTGGAAAATCGAAAT+GGG | 0.517094 | 7.3:-84937783 | None:intergenic |
| GAGTTGTGGAGAAAGGAGGA+TGG | 0.519893 | 7.3:-84937453 | None:intergenic |
| CTCACACTCTTCTTTACTCT+AGG | 0.520724 | 7.3:-84938989 | None:intergenic |
| AGAACTGATTTGAAGAGTAA+AGG | 0.524279 | 7.3:+84939298 | MS.gene97190:CDS |
| CAGTAGCAATGGGTTGGAGG+AGG | 0.524583 | 7.3:-84937344 | None:intergenic |
| CAAGGGTTTCAATGCGGTGA+AGG | 0.527850 | 7.3:-84937577 | None:intergenic |
| TTGATTGAGGGAAGATTCAA+GGG | 0.529353 | 7.3:-84937594 | None:intergenic |
| GTTTGCAGTTGTAGATGTTG+TGG | 0.531029 | 7.3:+84939117 | MS.gene97190:CDS |
| TATTCTTCAAAACCTCGCCT+TGG | 0.532468 | 7.3:-84939090 | None:intergenic |
| AGATCTAATAGCAATGAAAG+AGG | 0.544021 | 7.3:-84937744 | None:intergenic |
| TCAACACGTAGTAGTGATGA+TGG | 0.546972 | 7.3:+84939196 | MS.gene97190:CDS |
| GTGATTTGGGGTGGTGTACG+AGG | 0.550229 | 7.3:-84937511 | None:intergenic |
| ATGAGTTTGATGTTGATTGA+GGG | 0.550394 | 7.3:-84937606 | None:intergenic |
| TGTACGAGGTGGTTGAGTTG+TGG | 0.556062 | 7.3:-84937467 | None:intergenic |
| GTTTATGGAGATGATGGAGA+AGG | 0.561130 | 7.3:+84938839 | MS.gene97190:CDS |
| TGACGAGGAAGTGCTGGTGG+AGG | 0.561276 | 7.3:+84939162 | MS.gene97190:CDS |
| GATGAAGGGTTTGTGATTTG+GGG | 0.561923 | 7.3:-84937523 | None:intergenic |
| TGAAGATGACGAGGAAGTGC+TGG | 0.561932 | 7.3:+84939156 | MS.gene97190:CDS |
| TTGTGGAGAAAGGAGGATGG+AGG | 0.563095 | 7.3:-84937450 | None:intergenic |
| TGTGATGGTGGTTGTAGTGG+TGG | 0.564747 | 7.3:-84937295 | None:intergenic |
| TTAAAGCGGTAAAGAGTTCG+AGG | 0.566611 | 7.3:+84938705 | MS.gene97190:CDS |
| TGTACGAGGTGGTCGTGTTG+TGG | 0.568594 | 7.3:-84937419 | None:intergenic |
| AGCTGTTGAAGAATTTGAGG+GGG | 0.574755 | 7.3:+84938786 | MS.gene97190:CDS |
| ACAGCTTTGAGAGAAAGAGC+TGG | 0.591007 | 7.3:-84937797 | None:intergenic |
| GGGGTGCAGTAGCAATGGGT+TGG | 0.592304 | 7.3:-84937350 | None:intergenic |
| TGTGATACAATGATCGTGGA+TGG | 0.592819 | 7.3:+84938602 | MS.gene97190:CDS |
| TTCGTAGATCAAGAACACTA+AGG | 0.594526 | 7.3:+84937693 | MS.gene97190:CDS |
| GGTTGAGTTGTGGAGAAAGG+AGG | 0.595377 | 7.3:-84937457 | None:intergenic |
| GCATATGCATTATGTTAAAG+CGG | 0.601940 | 7.3:+84938691 | MS.gene97190:CDS |
| TTACACGTGCTGCGGAGTGT+CGG | 0.611191 | 7.3:-84937643 | None:intergenic |
| GTGGTTGTAGTGGTGGTGAG+AGG | 0.617629 | 7.3:-84937288 | None:intergenic |
| AAGCTGTTGAAGAATTTGAG+GGG | 0.617769 | 7.3:+84938785 | MS.gene97190:CDS |
| CTCAAATGATGACCAAGGCG+AGG | 0.628250 | 7.3:+84939078 | MS.gene97190:CDS |
| GATGTTGTGGACACTTCTCA+GGG | 0.629657 | 7.3:+84939130 | MS.gene97190:CDS |
| CAGAGACCAAGAAAACCAGA+AGG | 0.649951 | 7.3:+84938743 | MS.gene97190:CDS |
| ACAAGAACTTGTGAATCGGA+TGG | 0.651774 | 7.3:+84939049 | MS.gene97190:CDS |
| TGTTGTGGAGAAAGATGGGG+TGG | 0.652811 | 7.3:-84937404 | None:intergenic |
| TCGTGTTGTGGAGAAAGATG+GGG | 0.652928 | 7.3:-84937407 | None:intergenic |
| AGAGAATGGTAATGTTTGTG+AGG | 0.654824 | 7.3:+84939018 | MS.gene97190:CDS |
| GGTTTGGATTACACGTGCTG+CGG | 0.656835 | 7.3:-84937651 | None:intergenic |
| GAAGTGCTGGTGGAGGACAG+TGG | 0.658352 | 7.3:+84939169 | MS.gene97190:CDS |
| GTGATACAATGATCGTGGAT+GGG | 0.659335 | 7.3:+84938603 | MS.gene97190:CDS |
| AGATGACGAGGAAGTGCTGG+TGG | 0.672090 | 7.3:+84939159 | MS.gene97190:CDS |
| AGGAAATGGTTTGTACGAGG+TGG | 0.672405 | 7.3:-84937430 | None:intergenic |
| GTGCTGGTGGAGGACAGTGG+AGG | 0.676247 | 7.3:+84939172 | MS.gene97190:CDS |
| GTACGAGGTGGTCGTGTACG+AGG | 0.676857 | 7.3:-84937496 | None:intergenic |
| TGGAGGAAATGGTTTGTACG+AGG | 0.681151 | 7.3:-84937433 | None:intergenic |
| GACGATGATTATGATGACGA+TGG | 0.683290 | 7.3:+84938893 | MS.gene97190:CDS |
| GGACTGTGATACAATGATCG+TGG | 0.688220 | 7.3:+84938598 | MS.gene97190:intron |
| TCAGGGTGTTGAAGATGACG+AGG | 0.691426 | 7.3:+84939147 | MS.gene97190:CDS |
| AGTTCCTCAAATGATGACCA+AGG | 0.698816 | 7.3:+84939073 | MS.gene97190:CDS |
| GTGTTCTTGATCTACGAACG+AGG | 0.702234 | 7.3:-84937688 | None:intergenic |
| GTACGAGGTTGTGGTGTACG+AGG | 0.710331 | 7.3:-84937481 | None:intergenic |
| ATTTGGGGTGGTGTACGAGG+TGG | 0.713420 | 7.3:-84937508 | None:intergenic |
| AAGATTCAAGGGTTTCAATG+CGG | 0.722631 | 7.3:-84937583 | None:intergenic |
| CGAGGTTGTGGTGTACGAGG+TGG | 0.734134 | 7.3:-84937478 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTCAAATTTTTATTTTC+AGG | - | chr7.3:84937931-84937950 | None:intergenic | 10.0% |
| !!! | ATTTCAAATTTTTATTTTCA+GGG | - | chr7.3:84937930-84937949 | None:intergenic | 10.0% |
| !!! | GAAAATAAAAATTTGAAATT+TGG | + | chr7.3:84937931-84937950 | MS.gene97190:intron | 10.0% |
| !!! | TTTTATTTTGAATTTTTTAG+GGG | + | chr7.3:84938005-84938024 | MS.gene97190:intron | 10.0% |
| !!! | AAAATTTGAAATTTAGCTTT+AGG | + | chr7.3:84938059-84938078 | MS.gene97190:intron | 15.0% |
| !!! | AAAATTTGAAATTTGGTTTT+AGG | + | chr7.3:84937938-84937957 | MS.gene97190:intron | 15.0% |
| !!! | AAATTTGAAATTTAGCTTTA+GGG | + | chr7.3:84938060-84938079 | MS.gene97190:intron | 15.0% |
| !!! | AAATTTGAAATTTGGTTTTA+GGG | + | chr7.3:84937939-84937958 | MS.gene97190:intron | 15.0% |
| !!! | ATTTCAAATTTTCATTTTCA+TGG | - | chr7.3:84938051-84938070 | None:intergenic | 15.0% |
| !!! | TTTATTTTGAATTTTTTAGG+GGG | + | chr7.3:84938006-84938025 | MS.gene97190:intron | 15.0% |
| !! | AAAATAGAACCAATTATCTA+TGG | - | chr7.3:84938499-84938518 | None:intergenic | 20.0% |
| !! | AAATTACAATGATTGTGAAT+GGG | + | chr7.3:84937971-84937990 | MS.gene97190:intron | 20.0% |
| !! | AATTTGAATCCATAGATAAT+TGG | + | chr7.3:84938487-84938506 | MS.gene97190:intron | 20.0% |
| !! | TAAATTACAATGATTGTGAA+TGG | + | chr7.3:84937970-84937989 | MS.gene97190:intron | 20.0% |
| !!! | GATACTTTTAACGATATTTT+AGG | + | chr7.3:84938182-84938201 | MS.gene97190:intron | 20.0% |
| !!! | GATATATGTAGAGATATTTT+AGG | + | chr7.3:84938387-84938406 | MS.gene97190:intron | 20.0% |
| !!! | GTAAAAATGTTTTACACTAT+TGG | + | chr7.3:84938251-84938270 | MS.gene97190:intron | 20.0% |
| !!! | GTAAAGAATTTTTACAATGT+CGG | + | chr7.3:84938457-84938476 | MS.gene97190:intron | 20.0% |
| !!! | TTTCATTTGTGTTTTTTTTG+AGG | + | chr7.3:84937883-84937902 | MS.gene97190:intron | 20.0% |
| ! | AAATGAAAAATACCCAAGAT+TGG | - | chr7.3:84937860-84937879 | None:intergenic | 25.0% |
| ! | CTTCATGACATAAATAATAG+AGG | - | chr7.3:84938554-84938573 | None:intergenic | 25.0% |
| ! | GATTAATTTCTCTTTGTTGA+CGG | + | chr7.3:84938114-84938133 | MS.gene97190:intron | 25.0% |
| ! | TCTATTTGTCATGATTTGAT+AGG | - | chr7.3:84938369-84938388 | None:intergenic | 25.0% |
| !!! | AAGTTTTGAAATTTGGCTTT+AGG | + | chr7.3:84938577-84938596 | MS.gene97190:intron | 25.0% |
| !!! | GAAGAGAAAGTTTTGAAATT+TGG | + | chr7.3:84938570-84938589 | MS.gene97190:intron | 25.0% |
| AAAATGGTGTCTTTGTTCAA+AGG | + | chr7.3:84938954-84938973 | MS.gene97190:CDS | 30.0% | |
| AATTCAGGTAAATCCAATCT+TGG | + | chr7.3:84937844-84937863 | MS.gene97190:intron | 30.0% | |
| AGATCTAATAGCAATGAAAG+AGG | - | chr7.3:84937747-84937766 | None:intergenic | 30.0% | |
| AGCAAATTGTGTAAGGTTTA+TGG | + | chr7.3:84938824-84938843 | MS.gene97190:CDS | 30.0% | |
| ATTCAGGTAAATCCAATCTT+GGG | + | chr7.3:84937845-84937864 | MS.gene97190:intron | 30.0% | |
| CAAACTAAATTCATTGCAGA+AGG | + | chr7.3:84938280-84938299 | MS.gene97190:intron | 30.0% | |
| CATCAAACTTGATTCAATTC+AGG | + | chr7.3:84937829-84937848 | MS.gene97190:CDS | 30.0% | |
| GAAGATTAGCAAATTGTGTA+AGG | + | chr7.3:84938817-84938836 | MS.gene97190:CDS | 30.0% | |
| GCATATGCATTATGTTAAAG+CGG | + | chr7.3:84938691-84938710 | MS.gene97190:CDS | 30.0% | |
| TAGCATCAAGTGATTTGATT+AGG | + | chr7.3:84938221-84938240 | MS.gene97190:intron | 30.0% | |
| TGATAGATGCAAGTTGTTTA+AGG | - | chr7.3:84937721-84937740 | None:intergenic | 30.0% | |
| ! | ATGAGTTTGATGTTGATTGA+GGG | - | chr7.3:84937609-84937628 | None:intergenic | 30.0% |
| ! | GTGTAAACATTTTACACTCT+CGG | - | chr7.3:84938340-84938359 | None:intergenic | 30.0% |
| !! | AGAACTGATTTGAAGAGTAA+AGG | + | chr7.3:84939298-84939317 | MS.gene97190:CDS | 30.0% |
| !! | TAGAGATTTGGTTCAGTTTT+TGG | + | chr7.3:84938640-84938659 | MS.gene97190:CDS | 30.0% |
| !!! | ATTGGTGATTTTGATGATGA+AGG | - | chr7.3:84937541-84937560 | None:intergenic | 30.0% |
| !!! | TGATGTTTTGATTGGTAGAA+GGG | + | chr7.3:84938922-84938941 | MS.gene97190:CDS | 30.0% |
| !!! | TTGGTGATTTTGATGATGAA+GGG | - | chr7.3:84937540-84937559 | None:intergenic | 30.0% |
| AAAGAGCTGGAAAATCGAAA+TGG | - | chr7.3:84937787-84937806 | None:intergenic | 35.0% | |
| AAGAGCTGGAAAATCGAAAT+GGG | - | chr7.3:84937786-84937805 | None:intergenic | 35.0% | |
| AAGATTCAAGGGTTTCAATG+CGG | - | chr7.3:84937586-84937605 | None:intergenic | 35.0% | |
| AAGCTGTTGAAGAATTTGAG+GGG | + | chr7.3:84938785-84938804 | MS.gene97190:CDS | 35.0% | |
| AAGGTCCATTAGTAGAGATT+TGG | + | chr7.3:84938628-84938647 | MS.gene97190:CDS | 35.0% | |
| AGAAGCTGTTGAAGAATTTG+AGG | + | chr7.3:84938783-84938802 | MS.gene97190:CDS | 35.0% | |
| AGAAGGGATAGCAACAAAAA+TGG | + | chr7.3:84938938-84938957 | MS.gene97190:CDS | 35.0% | |
| ATGATGAAGGGTTTGTGATT+TGG | - | chr7.3:84937528-84937547 | None:intergenic | 35.0% | |
| CAGAGAACAAAATCTTCTCT+TGG | - | chr7.3:84939252-84939271 | None:intergenic | 35.0% | |
| CTGAACCAAATCTCTACTAA+TGG | - | chr7.3:84938636-84938655 | None:intergenic | 35.0% | |
| GAAGCTGTTGAAGAATTTGA+GGG | + | chr7.3:84938784-84938803 | MS.gene97190:CDS | 35.0% | |
| GGGTTGTGATACAATGATTA+TGG | + | chr7.3:84938080-84938099 | MS.gene97190:intron | 35.0% | |
| TAGCACAAGAACTTGTGAAT+CGG | + | chr7.3:84939045-84939064 | MS.gene97190:CDS | 35.0% | |
| TGATGAAGGGTTTGTGATTT+GGG | - | chr7.3:84937527-84937546 | None:intergenic | 35.0% | |
| TGTAAGGTTTATGGAGATGA+TGG | + | chr7.3:84938833-84938852 | MS.gene97190:CDS | 35.0% | |
| TTCGTAGATCAAGAACACTA+AGG | + | chr7.3:84937693-84937712 | MS.gene97190:CDS | 35.0% | |
| TTGATTGAGGGAAGATTCAA+GGG | - | chr7.3:84937597-84937616 | None:intergenic | 35.0% | |
| ! | AGAGAATGGTAATGTTTGTG+AGG | + | chr7.3:84939018-84939037 | MS.gene97190:CDS | 35.0% |
| ! | GATGAGTTTGATGTTGATTG+AGG | - | chr7.3:84937610-84937629 | None:intergenic | 35.0% |
| ! | GTTCTGCTTTCCATTTTAAG+TGG | - | chr7.3:84939283-84939302 | None:intergenic | 35.0% |
| ! | TCACTCAATGATGCACTTTT+TGG | - | chr7.3:84938420-84938439 | None:intergenic | 35.0% |
| !! | CACTCAATGATGCACTTTTT+GGG | - | chr7.3:84938419-84938438 | None:intergenic | 35.0% |
| !! | CTTTCCATTTTAAGTGGCAA+TGG | - | chr7.3:84939277-84939296 | None:intergenic | 35.0% |
| !! | GTTTTTGGACTCAATTGAAG+AGG | + | chr7.3:84938655-84938674 | MS.gene97190:CDS | 35.0% |
| !!! | CTGATGTTTTGATTGGTAGA+AGG | + | chr7.3:84938921-84938940 | MS.gene97190:CDS | 35.0% |
| !!! | GGAGTAACTGATGTTTTGAT+TGG | + | chr7.3:84938914-84938933 | MS.gene97190:CDS | 35.0% |
| AACGAGGAAAGAACGGAAAT+GGG | - | chr7.3:84937675-84937694 | None:intergenic | 40.0% | |
| ACAAGAACTTGTGAATCGGA+TGG | + | chr7.3:84939049-84939068 | MS.gene97190:CDS | 40.0% | |
| AGCTGTTGAAGAATTTGAGG+GGG | + | chr7.3:84938786-84938805 | MS.gene97190:CDS | 40.0% | |
| AGTGTGAGATTTGCAGAGAA+TGG | + | chr7.3:84939004-84939023 | MS.gene97190:CDS | 40.0% | |
| AGTTCCTCAAATGATGACCA+AGG | + | chr7.3:84939073-84939092 | MS.gene97190:CDS | 40.0% | |
| ATCTACGAACGAGGAAAGAA+CGG | - | chr7.3:84937682-84937701 | None:intergenic | 40.0% | |
| CTCACACTCTTCTTTACTCT+AGG | - | chr7.3:84938992-84939011 | None:intergenic | 40.0% | |
| GATGAAGGGTTTGTGATTTG+GGG | - | chr7.3:84937526-84937545 | None:intergenic | 40.0% | |
| GTGATACAATGATCGTGGAT+GGG | + | chr7.3:84938603-84938622 | MS.gene97190:CDS | 40.0% | |
| GTTGATTGAGGGAAGATTCA+AGG | - | chr7.3:84937598-84937617 | None:intergenic | 40.0% | |
| GTTTGCAGTTGTAGATGTTG+TGG | + | chr7.3:84939117-84939136 | MS.gene97190:CDS | 40.0% | |
| TATTCTTCAAAACCTCGCCT+TGG | - | chr7.3:84939093-84939112 | None:intergenic | 40.0% | |
| TCAACACGTAGTAGTGATGA+TGG | + | chr7.3:84939196-84939215 | MS.gene97190:CDS | 40.0% | |
| TGTGATACAATGATCGTGGA+TGG | + | chr7.3:84938602-84938621 | MS.gene97190:CDS | 40.0% | |
| TTAAAGCGGTAAAGAGTTCG+AGG | + | chr7.3:84938705-84938724 | MS.gene97190:CDS | 40.0% | |
| TTCTCATCATCATCACCTTC+TGG | - | chr7.3:84938761-84938780 | None:intergenic | 40.0% | |
| ! | GACGATGATTATGATGACGA+TGG | + | chr7.3:84938893-84938912 | MS.gene97190:CDS | 40.0% |
| ! | TGCTCCATTGCCACTTAAAA+TGG | + | chr7.3:84939270-84939289 | MS.gene97190:CDS | 40.0% |
| !! | GTTTATGGAGATGATGGAGA+AGG | + | chr7.3:84938839-84938858 | MS.gene97190:CDS | 40.0% |
| !!! | TCATCACCTTCTGGTTTTCT+TGG | - | chr7.3:84938752-84938771 | None:intergenic | 40.0% |
| AGAAAGGAGGATGGAGGAAA+TGG | - | chr7.3:84937447-84937466 | None:intergenic | 45.0% | |
| AGATGTTGTGGACACTTCTC+AGG | + | chr7.3:84939129-84939148 | MS.gene97190:CDS | 45.0% | |
| CAATGATCGTGGATGGGAAA+AGG | + | chr7.3:84938609-84938628 | MS.gene97190:CDS | 45.0% | |
| CAGAGACCAAGAAAACCAGA+AGG | + | chr7.3:84938743-84938762 | MS.gene97190:CDS | 45.0% | |
| GAACGAGGAAAGAACGGAAA+TGG | - | chr7.3:84937676-84937695 | None:intergenic | 45.0% | |
| GATGTTGTGGACACTTCTCA+GGG | + | chr7.3:84939130-84939149 | MS.gene97190:CDS | 45.0% | |
| GGACTGTGATACAATGATCG+TGG | + | chr7.3:84938598-84938617 | MS.gene97190:intron | 45.0% | |
| GTCGTGTTGTGGAGAAAGAT+GGG | - | chr7.3:84937411-84937430 | None:intergenic | 45.0% | |
| GTGTTCTTGATCTACGAACG+AGG | - | chr7.3:84937691-84937710 | None:intergenic | 45.0% | |
| GTTGAAGAATTTGAGGGGGA+GGG | + | chr7.3:84938790-84938809 | MS.gene97190:CDS | 45.0% | |
| TCGTGTTGTGGAGAAAGATG+GGG | - | chr7.3:84937410-84937429 | None:intergenic | 45.0% | |
| TGGAGAAGGTTTAGCGAATG+AGG | + | chr7.3:84938853-84938872 | MS.gene97190:CDS | 45.0% | |
| TGGTGTCTTTGTTCAAAGGC+AGG | + | chr7.3:84938958-84938977 | MS.gene97190:CDS | 45.0% | |
| TGTTGAAGAATTTGAGGGGG+AGG | + | chr7.3:84938789-84938808 | MS.gene97190:CDS | 45.0% | |
| ! | AGGAAATGGTTTGTACGAGG+TGG | - | chr7.3:84937433-84937452 | None:intergenic | 45.0% |
| ! | GGAAAGAACGGAAATGGGTT+TGG | - | chr7.3:84937670-84937689 | None:intergenic | 45.0% |
| ! | GGAGAGAAGAGAGTGTAGAT+TGG | - | chr7.3:84937559-84937578 | None:intergenic | 45.0% |
| ! | TGGAGGAAATGGTTTGTACG+AGG | - | chr7.3:84937436-84937455 | None:intergenic | 45.0% |
| !! | ACAGCTTTGAGAGAAAGAGC+TGG | - | chr7.3:84937800-84937819 | None:intergenic | 45.0% |
| !!! | AAATTTTTTTTTTTTTTTTG+AGG | + | chr7.3:84938523-84938542 | MS.gene97190:intron | 5.0% |
| !!! | ATTTTATTTTGAATTTTTTA+GGG | + | chr7.3:84938004-84938023 | MS.gene97190:intron | 5.0% |
| !!! | TATTTTATTTTGAATTTTTT+AGG | + | chr7.3:84938003-84938022 | MS.gene97190:intron | 5.0% |
| CAAGGGTTTCAATGCGGTGA+AGG | - | chr7.3:84937580-84937599 | None:intergenic | 50.0% | |
| CTCAAATGATGACCAAGGCG+AGG | + | chr7.3:84939078-84939097 | MS.gene97190:CDS | 50.0% | |
| CTCGCCTTGGTCATCATTTG+AGG | - | chr7.3:84939080-84939099 | None:intergenic | 50.0% | |
| GAGTTGTGGAGAAAGGAGGA+TGG | - | chr7.3:84937456-84937475 | None:intergenic | 50.0% | |
| GGTCGTGTTGTGGAGAAAGA+TGG | - | chr7.3:84937412-84937431 | None:intergenic | 50.0% | |
| GGTTTGGATTACACGTGCTG+CGG | - | chr7.3:84937654-84937673 | None:intergenic | 50.0% | |
| TGTTGTGGAGAAAGATGGGG+TGG | - | chr7.3:84937407-84937426 | None:intergenic | 50.0% | |
| TTGTGGAGAAAGGAGGATGG+AGG | - | chr7.3:84937453-84937472 | None:intergenic | 50.0% | |
| ! | GAAGGGTTTGTGATTTGGGG+TGG | - | chr7.3:84937523-84937542 | None:intergenic | 50.0% |
| ! | GGTGGTTGAGTTGTGGAGAA+AGG | - | chr7.3:84937463-84937482 | None:intergenic | 50.0% |
| ! | GGTTGAGTTGTGGAGAAAGG+AGG | - | chr7.3:84937460-84937479 | None:intergenic | 50.0% |
| ! | TGAAGATGACGAGGAAGTGC+TGG | + | chr7.3:84939156-84939175 | MS.gene97190:CDS | 50.0% |
| ! | TGTACGAGGTGGTTGAGTTG+TGG | - | chr7.3:84937470-84937489 | None:intergenic | 50.0% |
| !! | TCAGGGTGTTGAAGATGACG+AGG | + | chr7.3:84939147-84939166 | MS.gene97190:CDS | 50.0% |
| !! | TGTGATGGTGGTTGTAGTGG+TGG | - | chr7.3:84937298-84937317 | None:intergenic | 50.0% |
| AAGATGGGGTGGTTGTGGTG+TGG | - | chr7.3:84937396-84937415 | None:intergenic | 55.0% | |
| AGATGGGGTGGTTGTGGTGT+GGG | - | chr7.3:84937395-84937414 | None:intergenic | 55.0% | |
| GCGGTAAAGAGTTCGAGGTC+TGG | + | chr7.3:84938710-84938729 | MS.gene97190:CDS | 55.0% | |
| GGAGAAAGATGGGGTGGTTG+TGG | - | chr7.3:84937401-84937420 | None:intergenic | 55.0% | |
| GGGGTGTAGCATGGGTAAGA+GGG | - | chr7.3:84937374-84937393 | None:intergenic | 55.0% | |
| GGGTGTAGCATGGGTAAGAG+GGG | - | chr7.3:84937373-84937392 | None:intergenic | 55.0% | |
| GGTGTAGCATGGGTAAGAGG+GGG | - | chr7.3:84937372-84937391 | None:intergenic | 55.0% | |
| GTACGAGGTTGTGGTGTACG+AGG | - | chr7.3:84937484-84937503 | None:intergenic | 55.0% | |
| TGTACGAGGTGGTCGTGTTG+TGG | - | chr7.3:84937422-84937441 | None:intergenic | 55.0% | |
| TTACACGTGCTGCGGAGTGT+CGG | - | chr7.3:84937646-84937665 | None:intergenic | 55.0% | |
| ! | AAGAGGGGGTGCAGTAGCAA+TGG | - | chr7.3:84937358-84937377 | None:intergenic | 55.0% |
| ! | AGAGGGGGTGCAGTAGCAAT+GGG | - | chr7.3:84937357-84937376 | None:intergenic | 55.0% |
| ! | ATTTGGGGTGGTGTACGAGG+TGG | - | chr7.3:84937511-84937530 | None:intergenic | 55.0% |
| ! | GTGATTTGGGGTGGTGTACG+AGG | - | chr7.3:84937514-84937533 | None:intergenic | 55.0% |
| ! | GTGGTTGTAGTGGTGGTGAG+AGG | - | chr7.3:84937291-84937310 | None:intergenic | 55.0% |
| !! | AGATGACGAGGAAGTGCTGG+TGG | + | chr7.3:84939159-84939178 | MS.gene97190:CDS | 55.0% |
| !! | CAGTAGCAATGGGTTGGAGG+AGG | - | chr7.3:84937347-84937366 | None:intergenic | 55.0% |
| !! | GGCTGTGATGGTGGTTGTAG+TGG | - | chr7.3:84937301-84937320 | None:intergenic | 55.0% |
| !! | GTGCAGTAGCAATGGGTTGG+AGG | - | chr7.3:84937350-84937369 | None:intergenic | 55.0% |
| !! | TAGCAATGGGTTGGAGGAGG+TGG | - | chr7.3:84937344-84937363 | None:intergenic | 55.0% |
| ATGGGGTGGTTGTGGTGTGG+GGG | - | chr7.3:84937393-84937412 | None:intergenic | 60.0% | |
| CGAGGTTGTGGTGTACGAGG+TGG | - | chr7.3:84937481-84937500 | None:intergenic | 60.0% | |
| GATGGGGTGGTTGTGGTGTG+GGG | - | chr7.3:84937394-84937413 | None:intergenic | 60.0% | |
| GGGGTGCAGTAGCAATGGGT+TGG | - | chr7.3:84937353-84937372 | None:intergenic | 60.0% | |
| GGTGGTCGTGTACGAGGTTG+TGG | - | chr7.3:84937493-84937512 | None:intergenic | 60.0% | |
| GTACGAGGTGGTCGTGTACG+AGG | - | chr7.3:84937499-84937518 | None:intergenic | 60.0% | |
| ! | GGGGGTGTAGCATGGGTAAG+AGG | - | chr7.3:84937375-84937394 | None:intergenic | 60.0% |
| ! | GTGGTGTGGGGGTGTAGCAT+GGG | - | chr7.3:84937382-84937401 | None:intergenic | 60.0% |
| ! | TGTGGTGTGGGGGTGTAGCA+TGG | - | chr7.3:84937383-84937402 | None:intergenic | 60.0% |
| !! | CAATGGGTTGGAGGAGGTGG+TGG | - | chr7.3:84937341-84937360 | None:intergenic | 60.0% |
| !! | GAAGTGCTGGTGGAGGACAG+TGG | + | chr7.3:84939169-84939188 | MS.gene97190:CDS | 60.0% |
| !! | GAGGTTGGTGGTGGCTGTGA+TGG | - | chr7.3:84937313-84937332 | None:intergenic | 60.0% |
| !! | GTTGGTGGTGGCTGTGATGG+TGG | - | chr7.3:84937310-84937329 | None:intergenic | 60.0% |
| !! | TGACGAGGAAGTGCTGGTGG+AGG | + | chr7.3:84939162-84939181 | MS.gene97190:CDS | 60.0% |
| ! | GTGCTGGTGGAGGACAGTGG+AGG | + | chr7.3:84939172-84939191 | MS.gene97190:CDS | 65.0% |
| ! | TGGGTTGGAGGAGGTGGTGG+TGG | - | chr7.3:84937338-84937357 | None:intergenic | 65.0% |
| !! | GAGGTGGTGGTGGTGGAGGT+TGG | - | chr7.3:84937328-84937347 | None:intergenic | 65.0% |
| !! | GTGGTGGTGGAGGTTGGTGG+TGG | - | chr7.3:84937322-84937341 | None:intergenic | 65.0% |
| !! | GTGGTGGTGGTGGAGGTTGG+TGG | - | chr7.3:84937325-84937344 | None:intergenic | 65.0% |
| !! | GTTGGAGGAGGTGGTGGTGG+TGG | - | chr7.3:84937335-84937354 | None:intergenic | 65.0% |
| !! | GGAGGAGGTGGTGGTGGTGG+AGG | - | chr7.3:84937332-84937351 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 84937284 | 84939339 | 84937284 | ID=MS.gene97190 |
| chr7.3 | mRNA | 84937284 | 84939339 | 84937284 | ID=MS.gene97190.t1;Parent=MS.gene97190 |
| chr7.3 | exon | 84937284 | 84937850 | 84937284 | ID=MS.gene97190.t1.exon1;Parent=MS.gene97190.t1 |
| chr7.3 | CDS | 84937284 | 84937850 | 84937284 | ID=cds.MS.gene97190.t1;Parent=MS.gene97190.t1 |
| chr7.3 | exon | 84938599 | 84939339 | 84938599 | ID=MS.gene97190.t1.exon2;Parent=MS.gene97190.t1 |
| chr7.3 | CDS | 84938599 | 84939339 | 84938599 | ID=cds.MS.gene97190.t1;Parent=MS.gene97190.t1 |
| Gene Sequence |
| Protein sequence |
