Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97653.t1 | XP_003606124.2 | 97.3 | 300 | 8 | 0 | 89 | 388 | 88 | 387 | 1.80E-174 | 622.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97653.t1 | Q2KJ44 | 48.3 | 294 | 152 | 0 | 93 | 386 | 22 | 315 | 3.7e-83 | 310.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97653.t1 | G7JIF2 | 97.3 | 300 | 8 | 0 | 89 | 388 | 88 | 387 | 1.3e-174 | 622.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene97653 | MS.gene96812 | PPI |
| MS.gene97653 | MS.gene006768 | PPI |
| MS.gene97653 | MS.gene56557 | PPI |
| MS.gene97653 | MS.gene87267 | PPI |
| MS.gene97653 | MS.gene031528 | PPI |
| MS.gene97653 | MS.gene031278 | PPI |
| MS.gene97653 | MS.gene99805 | PPI |
| MS.gene97653 | MS.gene69797 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97653.t1 | MTR_4g053370 | 96.907 | 388 | 11 | 1 | 1 | 388 | 1 | 387 | 0.0 | 788 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97653.t1 | AT4G08960 | 76.438 | 365 | 85 | 1 | 24 | 388 | 27 | 390 | 0.0 | 589 |
Find 140 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAGGTTCACATGGTGTTT+GGG | 0.203964 | 4.4:+48964001 | MS.gene97653:CDS |
| CTGCAGGTTCACATGGTGTT+TGG | 0.227008 | 4.4:+48964000 | MS.gene97653:CDS |
| AGCACGCATACCATTTAATA+AGG | 0.252744 | 4.4:-48964331 | None:intergenic |
| AACGCAAGCCGGATTGATTA+TGG | 0.275169 | 4.4:+48963825 | MS.gene97653:CDS |
| AAAAGAAAATGCTGCATAAT+AGG | 0.276996 | 4.4:-48964302 | None:intergenic |
| GGTTGGTGGTGGGGAGATTT+CGG | 0.288567 | 4.4:-48963322 | None:intergenic |
| CCGGTGGTGGGTGGTGAGTT+TGG | 0.300291 | 4.4:-48963237 | None:intergenic |
| TATCTTTATCTTGCTTGTAT+TGG | 0.301174 | 4.4:+48964143 | MS.gene97653:CDS |
| TTACAACAAGCTGCGCGATA+TGG | 0.302962 | 4.4:+48963672 | MS.gene97653:CDS |
| CGATTTCATGACTCCGATTC+CGG | 0.304164 | 4.4:+48963504 | MS.gene97653:CDS |
| AAGGAAGGGGAGGGTGGTGG+TGG | 0.320144 | 4.4:-48963297 | None:intergenic |
| ATGATGGCGCGTTGGGAGTT+GGG | 0.322382 | 4.4:-48963381 | None:intergenic |
| CGCAAAATTTGTTTCATGTC+CGG | 0.330601 | 4.4:-48963850 | None:intergenic |
| GATTCATAACAAGGATATAT+TGG | 0.335690 | 4.4:+48964103 | MS.gene97653:CDS |
| GGTGGTGGTGCGAAGGTTGT+TGG | 0.336382 | 4.4:-48963282 | None:intergenic |
| GGATTCGTTTGACTGGGATT+TGG | 0.347891 | 4.4:-48963461 | None:intergenic |
| TCCTTGTTATGAATCGATTT+CGG | 0.352739 | 4.4:-48964095 | None:intergenic |
| ATGGGACGGTAGGTTGGTGG+TGG | 0.369250 | 4.4:-48963333 | None:intergenic |
| CTATTAACCTTCTTCCAATT+CGG | 0.369715 | 4.4:-48964236 | None:intergenic |
| CGTTGGGAGTTGGGGTCCGG+TGG | 0.372224 | 4.4:-48963372 | None:intergenic |
| AACAGCACACGGCATCAAAT+AGG | 0.373831 | 4.4:-48964395 | None:intergenic |
| GATGATGGCGCGTTGGGAGT+TGG | 0.375528 | 4.4:-48963382 | None:intergenic |
| CGGGAACGTGTTGGGCTTGT+GGG | 0.375625 | 4.4:-48963416 | None:intergenic |
| TTTCATCAACCCATAGGCTT+AGG | 0.377210 | 4.4:-48963641 | None:intergenic |
| GTTTGACTGGGATTTGGAAA+TGG | 0.380381 | 4.4:-48963455 | None:intergenic |
| GGGGATTGGATTCGTTTGAC+TGG | 0.384375 | 4.4:-48963468 | None:intergenic |
| GTTGCAATTGGTGTATTGTT+TGG | 0.385503 | 4.4:+48963974 | MS.gene97653:CDS |
| GAGAAGGAAGGGGAGGGTGG+TGG | 0.386591 | 4.4:-48963300 | None:intergenic |
| ACGTGTTGGGCTTGTGGGAC+CGG | 0.388222 | 4.4:-48963411 | None:intergenic |
| TAAATGGTATGCGTGCTTCT+TGG | 0.393961 | 4.4:+48964337 | MS.gene97653:CDS |
| CTTGCAGCAGGTGCCGGTGG+TGG | 0.396907 | 4.4:-48963250 | None:intergenic |
| ATATTAGTGGGGTGCCGAAT+TGG | 0.401572 | 4.4:+48964222 | MS.gene97653:CDS |
| TTCTCGAAACCCTAAGCCTA+TGG | 0.411170 | 4.4:+48963631 | MS.gene97653:CDS |
| TTGGGGTCCGGTGGGATAGC+CGG | 0.417278 | 4.4:-48963363 | None:intergenic |
| GGAACAATTTCAACTGTTGC+CGG | 0.418494 | 4.4:-48963780 | None:intergenic |
| AGCGAGGATGATGGCGCGTT+GGG | 0.418643 | 4.4:-48963388 | None:intergenic |
| GGGACGGTAGGTTGGTGGTG+GGG | 0.420695 | 4.4:-48963331 | None:intergenic |
| GGAGATTTCGGAGAAGGAAG+GGG | 0.423079 | 4.4:-48963310 | None:intergenic |
| CACGAACGATTAGTCAATTC+CGG | 0.423907 | 4.4:+48963717 | MS.gene97653:CDS |
| TTGCAGCAGGTGCCGGTGGT+GGG | 0.426710 | 4.4:-48963249 | None:intergenic |
| GATTGGTGAGGAAGATTATC+AGG | 0.427504 | 4.4:+48963905 | MS.gene97653:CDS |
| TGGGATAGCCGGAGCGCGGA+TGG | 0.427727 | 4.4:-48963352 | None:intergenic |
| TCGGAGAAGGAAGGGGAGGG+TGG | 0.431736 | 4.4:-48963303 | None:intergenic |
| TGTAGCTACGGGAACGTGTT+GGG | 0.433442 | 4.4:-48963424 | None:intergenic |
| GCGCGTTGGGAGTTGGGGTC+CGG | 0.439646 | 4.4:-48963375 | None:intergenic |
| ATTGACTAATCGTTCGTGCC+AGG | 0.442656 | 4.4:-48963712 | None:intergenic |
| GGGAGATTTCGGAGAAGGAA+GGG | 0.448421 | 4.4:-48963311 | None:intergenic |
| AGCCGGATTGATTATGGAAC+CGG | 0.450803 | 4.4:+48963831 | MS.gene97653:CDS |
| TGGACCGCCGCACTTGCAGC+AGG | 0.453080 | 4.4:-48963262 | None:intergenic |
| GATGTATAAAGCTGAAGTCT+TGG | 0.454317 | 4.4:+48964271 | MS.gene97653:CDS |
| GCCGCACTTGCAGCAGGTGC+CGG | 0.458057 | 4.4:-48963256 | None:intergenic |
| CCTATGTTGGATGATATTAG+TGG | 0.459272 | 4.4:+48964209 | MS.gene97653:CDS |
| TTCATCAACCCATAGGCTTA+GGG | 0.462141 | 4.4:-48963640 | None:intergenic |
| GGGGAGATTTCGGAGAAGGA+AGG | 0.464717 | 4.4:-48963312 | None:intergenic |
| GATTTCGGAGAAGGAAGGGG+AGG | 0.466478 | 4.4:-48963307 | None:intergenic |
| CCGGGAGGAACTTAAACATA+AGG | 0.467437 | 4.4:-48963746 | None:intergenic |
| GCAGGTTCACATGGTGTTTG+GGG | 0.468678 | 4.4:+48964002 | MS.gene97653:CDS |
| TTGTATTGTTTAGCGAGGTT+AGG | 0.472313 | 4.4:+48963879 | MS.gene97653:CDS |
| TGCGACGACCCAAATATAAA+CGG | 0.484672 | 4.4:-48964047 | None:intergenic |
| GGAGGGTGGTGGTGGTGCGA+AGG | 0.485010 | 4.4:-48963289 | None:intergenic |
| GGGATAGCCGGAGCGCGGAT+GGG | 0.488505 | 4.4:-48963351 | None:intergenic |
| TGAAATCGGCGAATATCATC+GGG | 0.489895 | 4.4:-48963489 | None:intergenic |
| ATTGTTTCTGATTGGTGGCA+AGG | 0.490486 | 4.4:-48963591 | None:intergenic |
| TGGGACGGTAGGTTGGTGGT+GGG | 0.490972 | 4.4:-48963332 | None:intergenic |
| TGCTGAGCATTCACCTATGT+TGG | 0.492827 | 4.4:+48964196 | MS.gene97653:CDS |
| ACGGGAACGTGTTGGGCTTG+TGG | 0.494475 | 4.4:-48963417 | None:intergenic |
| TGGTGGGGAGATTTCGGAGA+AGG | 0.494562 | 4.4:-48963316 | None:intergenic |
| AATTGGAAGAAGGTTAATAG+TGG | 0.495791 | 4.4:+48964239 | MS.gene97653:CDS |
| ATGGAAAGGCGGTGTAGCTA+CGG | 0.497511 | 4.4:-48963436 | None:intergenic |
| TAGTGTTAATTGTTTCTGAT+TGG | 0.497846 | 4.4:-48963599 | None:intergenic |
| GCGCGGATGGGACGGTAGGT+TGG | 0.498372 | 4.4:-48963339 | None:intergenic |
| TTCTGATTGGTGGCAAGGAT+CGG | 0.499072 | 4.4:-48963586 | None:intergenic |
| TGGATTCATCGTCGCACTAT+CGG | 0.499386 | 4.4:+48963539 | MS.gene97653:CDS |
| ATAGTTTCGGTAACGCAAGC+CGG | 0.500096 | 4.4:+48963814 | MS.gene97653:CDS |
| GTTGATGAGAAAGTTGCAAT+TGG | 0.501566 | 4.4:+48963962 | MS.gene97653:CDS |
| CTTAAACATAAGGGATTCAC+CGG | 0.503215 | 4.4:-48963736 | None:intergenic |
| TGATGGCGCGTTGGGAGTTG+GGG | 0.504793 | 4.4:-48963380 | None:intergenic |
| GTCCGGTTCCATAATCAATC+CGG | 0.506439 | 4.4:-48963833 | None:intergenic |
| CTTCGTCGTGGTGGTGGTGG+TGG | 0.509194 | 4.4:-48963203 | None:intergenic |
| GTGTATTGTTTGGAGCCTGC+AGG | 0.509281 | 4.4:+48963984 | MS.gene97653:CDS |
| TGTTAATTGTTTCTGATTGG+TGG | 0.509567 | 4.4:-48963596 | None:intergenic |
| GATCTTCGTCGTGGTGGTGG+TGG | 0.514130 | 4.4:-48963206 | None:intergenic |
| GTTGCCGGTTTAAGATCCTC+CGG | 0.515286 | 4.4:-48963765 | None:intergenic |
| CAGCAGGTGCCGGTGGTGGG+TGG | 0.517803 | 4.4:-48963246 | None:intergenic |
| CGGAATCGGAGTCATGAAAT+CGG | 0.520938 | 4.4:-48963503 | None:intergenic |
| TGGGGTGCCGAATTGGAAGA+AGG | 0.521399 | 4.4:+48964229 | MS.gene97653:CDS |
| CAGGTTCACATGGTGTTTGG+GGG | 0.522612 | 4.4:+48964003 | MS.gene97653:CDS |
| GGGATTGGATTCGTTTGACT+GGG | 0.523160 | 4.4:-48963467 | None:intergenic |
| GCACGCATACCATTTAATAA+GGG | 0.525572 | 4.4:-48964330 | None:intergenic |
| CGGGAGGAACTTAAACATAA+GGG | 0.526089 | 4.4:-48963745 | None:intergenic |
| ACCGGCACCTGCTGCAAGTG+CGG | 0.528830 | 4.4:+48963255 | MS.gene97653:CDS |
| ATGAAATCGGCGAATATCAT+CGG | 0.530272 | 4.4:-48963490 | None:intergenic |
| CCTCCCGGAGGATCTTAAAC+CGG | 0.532607 | 4.4:+48963761 | MS.gene97653:CDS |
| GTGTAGCTACGGGAACGTGT+TGG | 0.536048 | 4.4:-48963425 | None:intergenic |
| TTGGTGTGATTCTTCTGACA+TGG | 0.537503 | 4.4:-48963178 | None:intergenic |
| TAGCCGGAGCGCGGATGGGA+CGG | 0.537711 | 4.4:-48963347 | None:intergenic |
| CTACCGTCCCATCCGCGCTC+CGG | 0.538251 | 4.4:+48963344 | MS.gene97653:CDS |
| ATTTCGGAGAAGGAAGGGGA+GGG | 0.543147 | 4.4:-48963306 | None:intergenic |
| CCTTATGTTTAAGTTCCTCC+CGG | 0.543603 | 4.4:+48963746 | MS.gene97653:CDS |
| TGGGACCGGAGCGAGGATGA+TGG | 0.545102 | 4.4:-48963397 | None:intergenic |
| GGGCTTGTGGGACCGGAGCG+AGG | 0.546066 | 4.4:-48963404 | None:intergenic |
| CGGATGGGACGGTAGGTTGG+TGG | 0.546322 | 4.4:-48963336 | None:intergenic |
| CCGCGCTCCGGCTATCCCAC+CGG | 0.547082 | 4.4:+48963356 | MS.gene97653:CDS |
| TTGGAGCCTGCAGGTTCACA+TGG | 0.547952 | 4.4:+48963993 | MS.gene97653:CDS |
| ACTGGGATTTGGAAATGGAA+AGG | 0.550667 | 4.4:-48963450 | None:intergenic |
| TTAGCGAGGTTAGGTGCGAT+TGG | 0.556294 | 4.4:+48963888 | MS.gene97653:CDS |
| TGGAAAGGCGGTGTAGCTAC+GGG | 0.556436 | 4.4:-48963435 | None:intergenic |
| ACGCGCCATCATCCTCGCTC+CGG | 0.556958 | 4.4:+48963392 | MS.gene97653:CDS |
| GGTGATCTTCGTCGTGGTGG+TGG | 0.558418 | 4.4:-48963209 | None:intergenic |
| GAGCGAGGATGATGGCGCGT+TGG | 0.559327 | 4.4:-48963389 | None:intergenic |
| TCTCGAAACCCTAAGCCTAT+GGG | 0.561363 | 4.4:+48963632 | MS.gene97653:CDS |
| GTTGGGAGTTGGGGTCCGGT+GGG | 0.566244 | 4.4:-48963371 | None:intergenic |
| GGCACCTGCTGCAAGTGCGG+CGG | 0.567796 | 4.4:+48963258 | MS.gene97653:CDS |
| GAAACATCGCTTATCGAACC+TGG | 0.569038 | 4.4:+48963694 | MS.gene97653:CDS |
| CCAAACTCACCACCCACCAC+CGG | 0.570430 | 4.4:+48963237 | MS.gene97653:CDS |
| TTGCCGGTTTAAGATCCTCC+GGG | 0.581718 | 4.4:-48963764 | None:intergenic |
| GCACTATCGGATTCCACGCG+TGG | 0.583864 | 4.4:+48963552 | MS.gene97653:CDS |
| TAAAGCTGAAGTCTTGGAGA+AGG | 0.585717 | 4.4:+48964277 | MS.gene97653:CDS |
| TATCGCGCAGCTTGTTGTAA+CGG | 0.589276 | 4.4:-48963669 | None:intergenic |
| CTTGGTTGTATTGTTTAGCG+AGG | 0.591526 | 4.4:+48963874 | MS.gene97653:CDS |
| GTGGAATTTCATCAACCCAT+AGG | 0.593524 | 4.4:-48963647 | None:intergenic |
| GCACTTGCAGCAGGTGCCGG+TGG | 0.593819 | 4.4:-48963253 | None:intergenic |
| CAAACACCATGTGAACCTGC+AGG | 0.596121 | 4.4:-48963999 | None:intergenic |
| GCCGAAATCGATTCATAACA+AGG | 0.602106 | 4.4:+48964094 | MS.gene97653:CDS |
| TTTGTGATGAAGGTGAAGAA+GGG | 0.607215 | 4.4:+48964167 | MS.gene97653:CDS |
| CCACTAATATCATCCAACAT+AGG | 0.607641 | 4.4:-48964209 | None:intergenic |
| TGCGGTGATCTTCGTCGTGG+TGG | 0.611338 | 4.4:-48963212 | None:intergenic |
| CTATGTTGGATGATATTAGT+GGG | 0.612054 | 4.4:+48964210 | MS.gene97653:CDS |
| CGCGCAGCTTGTTGTAACGG+TGG | 0.615214 | 4.4:-48963666 | None:intergenic |
| CGGAGCGCGGATGGGACGGT+AGG | 0.623815 | 4.4:-48963343 | None:intergenic |
| TGGGTGGTGAGTTTGGAGTG+CGG | 0.626122 | 4.4:-48963230 | None:intergenic |
| CCGGTGGGATAGCCGGAGCG+CGG | 0.627795 | 4.4:-48963356 | None:intergenic |
| GAGGTTAGGTGCGATTGGTG+AGG | 0.658266 | 4.4:+48963893 | MS.gene97653:CDS |
| TATGTTTAAGTTCCTCCCGG+AGG | 0.687323 | 4.4:+48963749 | MS.gene97653:CDS |
| GGGATTTGGAAATGGAAAGG+CGG | 0.694877 | 4.4:-48963447 | None:intergenic |
| AAATCGGCGAATATCATCGG+GGG | 0.707005 | 4.4:-48963487 | None:intergenic |
| CCGGTTTAAGATCCTCCGGG+AGG | 0.720116 | 4.4:-48963761 | None:intergenic |
| GAGTGCGGTGATCTTCGTCG+TGG | 0.726247 | 4.4:-48963215 | None:intergenic |
| GAAATCGGCGAATATCATCG+GGG | 0.748149 | 4.4:-48963488 | None:intergenic |
| TATGTTGGATGATATTAGTG+GGG | 0.749431 | 4.4:+48964211 | MS.gene97653:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTGCCGTTTATATTT+GGG | + | chr4.4:48964039-48964058 | MS.gene97653:CDS | 20.0% |
| ! | AAAAGAAAATGCTGCATAAT+AGG | - | chr4.4:48964305-48964324 | None:intergenic | 25.0% |
| ! | GATTCATAACAAGGATATAT+TGG | + | chr4.4:48964103-48964122 | MS.gene97653:CDS | 25.0% |
| ! | TATCTTTATCTTGCTTGTAT+TGG | + | chr4.4:48964143-48964162 | MS.gene97653:CDS | 25.0% |
| !! | ATTATGCAGCATTTTCTTTT+TGG | + | chr4.4:48964305-48964324 | MS.gene97653:CDS | 25.0% |
| !! | TGAAATTGTTCCGTATTTTT+CGG | + | chr4.4:48963791-48963810 | MS.gene97653:CDS | 25.0% |
| !!! | CATTTTTTGCCGTTTATATT+TGG | + | chr4.4:48964038-48964057 | MS.gene97653:CDS | 25.0% |
| !!! | TAGTGTTAATTGTTTCTGAT+TGG | - | chr4.4:48963602-48963621 | None:intergenic | 25.0% |
| !!! | TTTTTGGTTCCCTTATTAAA+TGG | + | chr4.4:48964321-48964340 | MS.gene97653:CDS | 25.0% |
| AATTGGAAGAAGGTTAATAG+TGG | + | chr4.4:48964239-48964258 | MS.gene97653:CDS | 30.0% | |
| CTATGTTGGATGATATTAGT+GGG | + | chr4.4:48964210-48964229 | MS.gene97653:CDS | 30.0% | |
| CTATTAACCTTCTTCCAATT+CGG | - | chr4.4:48964239-48964258 | None:intergenic | 30.0% | |
| TATGTTGGATGATATTAGTG+GGG | + | chr4.4:48964211-48964230 | MS.gene97653:CDS | 30.0% | |
| ! | TCCTTGTTATGAATCGATTT+CGG | - | chr4.4:48964098-48964117 | None:intergenic | 30.0% |
| !! | TGTTAATTGTTTCTGATTGG+TGG | - | chr4.4:48963599-48963618 | None:intergenic | 30.0% |
| !!! | TTGTATTGGTTTTGTGATGA+AGG | + | chr4.4:48964157-48964176 | MS.gene97653:CDS | 30.0% |
| AGCACGCATACCATTTAATA+AGG | - | chr4.4:48964334-48964353 | None:intergenic | 35.0% | |
| ATGAAATCGGCGAATATCAT+CGG | - | chr4.4:48963493-48963512 | None:intergenic | 35.0% | |
| CCACTAATATCATCCAACAT+AGG | - | chr4.4:48964212-48964231 | None:intergenic | 35.0% | |
| CCGAAACTATCCGAAAAATA+CGG | - | chr4.4:48963804-48963823 | None:intergenic | 35.0% | |
| CCTATGTTGGATGATATTAG+TGG | + | chr4.4:48964209-48964228 | MS.gene97653:CDS | 35.0% | |
| CTTAAACATAAGGGATTCAC+CGG | - | chr4.4:48963739-48963758 | None:intergenic | 35.0% | |
| GATGTATAAAGCTGAAGTCT+TGG | + | chr4.4:48964271-48964290 | MS.gene97653:CDS | 35.0% | |
| GCACGCATACCATTTAATAA+GGG | - | chr4.4:48964333-48964352 | None:intergenic | 35.0% | |
| GTTGCAATTGGTGTATTGTT+TGG | + | chr4.4:48963974-48963993 | MS.gene97653:CDS | 35.0% | |
| TTGTATTGTTTAGCGAGGTT+AGG | + | chr4.4:48963879-48963898 | MS.gene97653:CDS | 35.0% | |
| TTTGTGATGAAGGTGAAGAA+GGG | + | chr4.4:48964167-48964186 | MS.gene97653:CDS | 35.0% | |
| ! | AGTGAAGTTTTTACCGGAAT+CGG | - | chr4.4:48963520-48963539 | None:intergenic | 35.0% |
| ! | ATGAAACAAATTTTGCGGCT+TGG | + | chr4.4:48963856-48963875 | MS.gene97653:CDS | 35.0% |
| ! | CGCAAAATTTGTTTCATGTC+CGG | - | chr4.4:48963853-48963872 | None:intergenic | 35.0% |
| ! | CGGACATGAAACAAATTTTG+CGG | + | chr4.4:48963851-48963870 | MS.gene97653:CDS | 35.0% |
| ! | GAATCCAGTGAAGTTTTTAC+CGG | - | chr4.4:48963526-48963545 | None:intergenic | 35.0% |
| ! | GTTGATGAGAAAGTTGCAAT+TGG | + | chr4.4:48963962-48963981 | MS.gene97653:CDS | 35.0% |
| ! | TTTTGTGATGAAGGTGAAGA+AGG | + | chr4.4:48964166-48964185 | MS.gene97653:CDS | 35.0% |
| !! | CCGTATTTTTCGGATAGTTT+CGG | + | chr4.4:48963801-48963820 | MS.gene97653:CDS | 35.0% |
| ACTGGGATTTGGAAATGGAA+AGG | - | chr4.4:48963453-48963472 | None:intergenic | 40.0% | |
| CGGGAGGAACTTAAACATAA+GGG | - | chr4.4:48963748-48963767 | None:intergenic | 40.0% | |
| CTTGGTTGTATTGTTTAGCG+AGG | + | chr4.4:48963874-48963893 | MS.gene97653:CDS | 40.0% | |
| GATTCCGGTAAAAACTTCAC+TGG | + | chr4.4:48963519-48963538 | MS.gene97653:CDS | 40.0% | |
| GATTGGTGAGGAAGATTATC+AGG | + | chr4.4:48963905-48963924 | MS.gene97653:CDS | 40.0% | |
| GGAACAATTTCAACTGTTGC+CGG | - | chr4.4:48963783-48963802 | None:intergenic | 40.0% | |
| GTGGAATTTCATCAACCCAT+AGG | - | chr4.4:48963650-48963669 | None:intergenic | 40.0% | |
| GTTTGACTGGGATTTGGAAA+TGG | - | chr4.4:48963458-48963477 | None:intergenic | 40.0% | |
| TAAAGCTGAAGTCTTGGAGA+AGG | + | chr4.4:48964277-48964296 | MS.gene97653:CDS | 40.0% | |
| TAAATGGTATGCGTGCTTCT+TGG | + | chr4.4:48964337-48964356 | MS.gene97653:CDS | 40.0% | |
| TGAAATCGGCGAATATCATC+GGG | - | chr4.4:48963492-48963511 | None:intergenic | 40.0% | |
| TGCGACGACCCAAATATAAA+CGG | - | chr4.4:48964050-48964069 | None:intergenic | 40.0% | |
| TTCATCAACCCATAGGCTTA+GGG | - | chr4.4:48963643-48963662 | None:intergenic | 40.0% | |
| TTTCATCAACCCATAGGCTT+AGG | - | chr4.4:48963644-48963663 | None:intergenic | 40.0% | |
| ! | CACGAACGATTAGTCAATTC+CGG | + | chr4.4:48963717-48963736 | MS.gene97653:CDS | 40.0% |
| ! | CCTTATGTTTAAGTTCCTCC+CGG | + | chr4.4:48963746-48963765 | MS.gene97653:CDS | 40.0% |
| ! | GCCGAAATCGATTCATAACA+AGG | + | chr4.4:48964094-48964113 | MS.gene97653:CDS | 40.0% |
| !! | ATTGTTTCTGATTGGTGGCA+AGG | - | chr4.4:48963594-48963613 | None:intergenic | 40.0% |
| AAATCGGCGAATATCATCGG+GGG | - | chr4.4:48963490-48963509 | None:intergenic | 45.0% | |
| AACGCAAGCCGGATTGATTA+TGG | + | chr4.4:48963825-48963844 | MS.gene97653:CDS | 45.0% | |
| AGCCGGATTGATTATGGAAC+CGG | + | chr4.4:48963831-48963850 | MS.gene97653:CDS | 45.0% | |
| ATAGTTTCGGTAACGCAAGC+CGG | + | chr4.4:48963814-48963833 | MS.gene97653:CDS | 45.0% | |
| ATTGACTAATCGTTCGTGCC+AGG | - | chr4.4:48963715-48963734 | None:intergenic | 45.0% | |
| CCGGGAGGAACTTAAACATA+AGG | - | chr4.4:48963749-48963768 | None:intergenic | 45.0% | |
| CGATTTCATGACTCCGATTC+CGG | + | chr4.4:48963504-48963523 | MS.gene97653:CDS | 45.0% | |
| CGGAATCGGAGTCATGAAAT+CGG | - | chr4.4:48963506-48963525 | None:intergenic | 45.0% | |
| GAAACATCGCTTATCGAACC+TGG | + | chr4.4:48963694-48963713 | MS.gene97653:CDS | 45.0% | |
| GAAATCGGCGAATATCATCG+GGG | - | chr4.4:48963491-48963510 | None:intergenic | 45.0% | |
| GGATTCGTTTGACTGGGATT+TGG | - | chr4.4:48963464-48963483 | None:intergenic | 45.0% | |
| GGGATTGGATTCGTTTGACT+GGG | - | chr4.4:48963470-48963489 | None:intergenic | 45.0% | |
| GGGATTTGGAAATGGAAAGG+CGG | - | chr4.4:48963450-48963469 | None:intergenic | 45.0% | |
| GTCCGGTTCCATAATCAATC+CGG | - | chr4.4:48963836-48963855 | None:intergenic | 45.0% | |
| TCTCGAAACCCTAAGCCTAT+GGG | + | chr4.4:48963632-48963651 | MS.gene97653:CDS | 45.0% | |
| TGCAGGTTCACATGGTGTTT+GGG | + | chr4.4:48964001-48964020 | MS.gene97653:CDS | 45.0% | |
| TGCTGAGCATTCACCTATGT+TGG | + | chr4.4:48964196-48964215 | MS.gene97653:CDS | 45.0% | |
| TGGATTCATCGTCGCACTAT+CGG | + | chr4.4:48963539-48963558 | MS.gene97653:CDS | 45.0% | |
| TTACAACAAGCTGCGCGATA+TGG | + | chr4.4:48963672-48963691 | MS.gene97653:CDS | 45.0% | |
| TTCTCGAAACCCTAAGCCTA+TGG | + | chr4.4:48963631-48963650 | MS.gene97653:CDS | 45.0% | |
| ! | TATGTTTAAGTTCCTCCCGG+AGG | + | chr4.4:48963749-48963768 | MS.gene97653:CDS | 45.0% |
| ! | TTCTGATTGGTGGCAAGGAT+CGG | - | chr4.4:48963589-48963608 | None:intergenic | 45.0% |
| !! | ATATTAGTGGGGTGCCGAAT+TGG | + | chr4.4:48964222-48964241 | MS.gene97653:CDS | 45.0% |
| !! | TATCGCGCAGCTTGTTGTAA+CGG | - | chr4.4:48963672-48963691 | None:intergenic | 45.0% |
| ATGGAAAGGCGGTGTAGCTA+CGG | - | chr4.4:48963439-48963458 | None:intergenic | 50.0% | |
| ATTTCGGAGAAGGAAGGGGA+GGG | - | chr4.4:48963309-48963328 | None:intergenic | 50.0% | |
| CAAACACCATGTGAACCTGC+AGG | - | chr4.4:48964002-48964021 | None:intergenic | 50.0% | |
| CAGGTTCACATGGTGTTTGG+GGG | + | chr4.4:48964003-48964022 | MS.gene97653:CDS | 50.0% | |
| CTGCAGGTTCACATGGTGTT+TGG | + | chr4.4:48964000-48964019 | MS.gene97653:CDS | 50.0% | |
| GCAGGTTCACATGGTGTTTG+GGG | + | chr4.4:48964002-48964021 | MS.gene97653:CDS | 50.0% | |
| GGAGATTTCGGAGAAGGAAG+GGG | - | chr4.4:48963313-48963332 | None:intergenic | 50.0% | |
| GGGAGATTTCGGAGAAGGAA+GGG | - | chr4.4:48963314-48963333 | None:intergenic | 50.0% | |
| GGGGATTGGATTCGTTTGAC+TGG | - | chr4.4:48963471-48963490 | None:intergenic | 50.0% | |
| TGTAGCTACGGGAACGTGTT+GGG | - | chr4.4:48963427-48963446 | None:intergenic | 50.0% | |
| TTAGCGAGGTTAGGTGCGAT+TGG | + | chr4.4:48963888-48963907 | MS.gene97653:CDS | 50.0% | |
| ! | GGCAAGGATCGGAGATTTTG+CGG | - | chr4.4:48963578-48963597 | None:intergenic | 50.0% |
| ! | GTGTATTGTTTGGAGCCTGC+AGG | + | chr4.4:48963984-48964003 | MS.gene97653:CDS | 50.0% |
| !! | GTTGCCGGTTTAAGATCCTC+CGG | - | chr4.4:48963768-48963787 | None:intergenic | 50.0% |
| !! | TTGCCGGTTTAAGATCCTCC+GGG | - | chr4.4:48963767-48963786 | None:intergenic | 50.0% |
| CCTCCCGGAGGATCTTAAAC+CGG | + | chr4.4:48963761-48963780 | MS.gene97653:CDS | 55.0% | |
| GAGGTTAGGTGCGATTGGTG+AGG | + | chr4.4:48963893-48963912 | MS.gene97653:CDS | 55.0% | |
| GATTTCGGAGAAGGAAGGGG+AGG | - | chr4.4:48963310-48963329 | None:intergenic | 55.0% | |
| GGCGAATATCATCGGGGGAT+TGG | - | chr4.4:48963485-48963504 | None:intergenic | 55.0% | |
| GGGGAGATTTCGGAGAAGGA+AGG | - | chr4.4:48963315-48963334 | None:intergenic | 55.0% | |
| GTGTAGCTACGGGAACGTGT+TGG | - | chr4.4:48963428-48963447 | None:intergenic | 55.0% | |
| TGGAAAGGCGGTGTAGCTAC+GGG | - | chr4.4:48963438-48963457 | None:intergenic | 55.0% | |
| TGGTGGGGAGATTTCGGAGA+AGG | - | chr4.4:48963319-48963338 | None:intergenic | 55.0% | |
| TTGGAGCCTGCAGGTTCACA+TGG | + | chr4.4:48963993-48964012 | MS.gene97653:CDS | 55.0% | |
| ! | ATGATGGCGCGTTGGGAGTT+GGG | - | chr4.4:48963384-48963403 | None:intergenic | 55.0% |
| ! | TGGGTGGTGAGTTTGGAGTG+CGG | - | chr4.4:48963233-48963252 | None:intergenic | 55.0% |
| !! | GGTTGGTGGTGGGGAGATTT+CGG | - | chr4.4:48963325-48963344 | None:intergenic | 55.0% |
| !! | TGGGGTGCCGAATTGGAAGA+AGG | + | chr4.4:48964229-48964248 | MS.gene97653:CDS | 55.0% |
| ACGGGAACGTGTTGGGCTTG+TGG | - | chr4.4:48963420-48963439 | None:intergenic | 60.0% | |
| ACGTGTTGGGCTTGTGGGAC+CGG | - | chr4.4:48963414-48963433 | None:intergenic | 60.0% | |
| CCAAACTCACCACCCACCAC+CGG | + | chr4.4:48963237-48963256 | MS.gene97653:CDS | 60.0% | |
| CGGGAACGTGTTGGGCTTGT+GGG | - | chr4.4:48963419-48963438 | None:intergenic | 60.0% | |
| GAGTGCGGTGATCTTCGTCG+TGG | - | chr4.4:48963218-48963237 | None:intergenic | 60.0% | |
| GCACTATCGGATTCCACGCG+TGG | + | chr4.4:48963552-48963571 | MS.gene97653:CDS | 60.0% | |
| GGTGATCTTCGTCGTGGTGG+TGG | - | chr4.4:48963212-48963231 | None:intergenic | 60.0% | |
| TGCGGTGATCTTCGTCGTGG+TGG | - | chr4.4:48963215-48963234 | None:intergenic | 60.0% | |
| ! | AGCGAGGATGATGGCGCGTT+GGG | - | chr4.4:48963391-48963410 | None:intergenic | 60.0% |
| ! | CCGGTTTAAGATCCTCCGGG+AGG | - | chr4.4:48963764-48963783 | None:intergenic | 60.0% |
| ! | GATGATGGCGCGTTGGGAGT+TGG | - | chr4.4:48963385-48963404 | None:intergenic | 60.0% |
| ! | GGTGGTGGTGCGAAGGTTGT+TGG | - | chr4.4:48963285-48963304 | None:intergenic | 60.0% |
| ! | TGATGGCGCGTTGGGAGTTG+GGG | - | chr4.4:48963383-48963402 | None:intergenic | 60.0% |
| !! | ATGGGACGGTAGGTTGGTGG+TGG | - | chr4.4:48963336-48963355 | None:intergenic | 60.0% |
| !! | CGCGCAGCTTGTTGTAACGG+TGG | - | chr4.4:48963669-48963688 | None:intergenic | 60.0% |
| !! | GATCTTCGTCGTGGTGGTGG+TGG | - | chr4.4:48963209-48963228 | None:intergenic | 60.0% |
| !! | TGGGACGGTAGGTTGGTGGT+GGG | - | chr4.4:48963335-48963354 | None:intergenic | 60.0% |
| ACCGGCACCTGCTGCAAGTG+CGG | + | chr4.4:48963255-48963274 | MS.gene97653:CDS | 65.0% | |
| ACGCGCCATCATCCTCGCTC+CGG | + | chr4.4:48963392-48963411 | MS.gene97653:CDS | 65.0% | |
| GAGAAGGAAGGGGAGGGTGG+TGG | - | chr4.4:48963303-48963322 | None:intergenic | 65.0% | |
| GTTGGGAGTTGGGGTCCGGT+GGG | - | chr4.4:48963374-48963393 | None:intergenic | 65.0% | |
| TCGGAGAAGGAAGGGGAGGG+TGG | - | chr4.4:48963306-48963325 | None:intergenic | 65.0% | |
| TGGGACCGGAGCGAGGATGA+TGG | - | chr4.4:48963400-48963419 | None:intergenic | 65.0% | |
| TTGGGGTCCGGTGGGATAGC+CGG | - | chr4.4:48963366-48963385 | None:intergenic | 65.0% | |
| ! | AAGGAAGGGGAGGGTGGTGG+TGG | - | chr4.4:48963300-48963319 | None:intergenic | 65.0% |
| ! | CGGATGGGACGGTAGGTTGG+TGG | - | chr4.4:48963339-48963358 | None:intergenic | 65.0% |
| ! | GAGCGAGGATGATGGCGCGT+TGG | - | chr4.4:48963392-48963411 | None:intergenic | 65.0% |
| ! | GGAGATTTTGCGGCCACGCG+TGG | - | chr4.4:48963568-48963587 | None:intergenic | 65.0% |
| !! | CCGGTGGTGGGTGGTGAGTT+TGG | - | chr4.4:48963240-48963259 | None:intergenic | 65.0% |
| !! | CGTGGTGGTGGTGGTGGTGT+TGG | - | chr4.4:48963200-48963219 | None:intergenic | 65.0% |
| !! | CTTCGTCGTGGTGGTGGTGG+TGG | - | chr4.4:48963206-48963225 | None:intergenic | 65.0% |
| !! | GGGACGGTAGGTTGGTGGTG+GGG | - | chr4.4:48963334-48963353 | None:intergenic | 65.0% |
| !! | TTGCAGCAGGTGCCGGTGGT+GGG | - | chr4.4:48963252-48963271 | None:intergenic | 65.0% |
| CGTTGGGAGTTGGGGTCCGG+TGG | - | chr4.4:48963375-48963394 | None:intergenic | 70.0% | |
| CTACCGTCCCATCCGCGCTC+CGG | + | chr4.4:48963344-48963363 | MS.gene97653:CDS | 70.0% | |
| GCCGCACTTGCAGCAGGTGC+CGG | - | chr4.4:48963259-48963278 | None:intergenic | 70.0% | |
| GCGCGGATGGGACGGTAGGT+TGG | - | chr4.4:48963342-48963361 | None:intergenic | 70.0% | |
| GCGCGTTGGGAGTTGGGGTC+CGG | - | chr4.4:48963378-48963397 | None:intergenic | 70.0% | |
| GGCACCTGCTGCAAGTGCGG+CGG | + | chr4.4:48963258-48963277 | MS.gene97653:CDS | 70.0% | |
| GGGATAGCCGGAGCGCGGAT+GGG | - | chr4.4:48963354-48963373 | None:intergenic | 70.0% | |
| TAGCCGGAGCGCGGATGGGA+CGG | - | chr4.4:48963350-48963369 | None:intergenic | 70.0% | |
| TGGACCGCCGCACTTGCAGC+AGG | - | chr4.4:48963265-48963284 | None:intergenic | 70.0% | |
| TGGGATAGCCGGAGCGCGGA+TGG | - | chr4.4:48963355-48963374 | None:intergenic | 70.0% | |
| !! | CTTGCAGCAGGTGCCGGTGG+TGG | - | chr4.4:48963253-48963272 | None:intergenic | 70.0% |
| !! | GCACTTGCAGCAGGTGCCGG+TGG | - | chr4.4:48963256-48963275 | None:intergenic | 70.0% |
| !! | GGAGGGTGGTGGTGGTGCGA+AGG | - | chr4.4:48963292-48963311 | None:intergenic | 70.0% |
| CCGCGCTCCGGCTATCCCAC+CGG | + | chr4.4:48963356-48963375 | MS.gene97653:CDS | 75.0% | |
| CCGGTGGGATAGCCGGAGCG+CGG | - | chr4.4:48963359-48963378 | None:intergenic | 75.0% | |
| CGGAGCGCGGATGGGACGGT+AGG | - | chr4.4:48963346-48963365 | None:intergenic | 75.0% | |
| GGGCTTGTGGGACCGGAGCG+AGG | - | chr4.4:48963407-48963426 | None:intergenic | 75.0% | |
| !! | CAGCAGGTGCCGGTGGTGGG+TGG | - | chr4.4:48963249-48963268 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 48963180 | 48964403 | 48963180 | ID=MS.gene97653 |
| chr4.4 | mRNA | 48963180 | 48964403 | 48963180 | ID=MS.gene97653.t1;Parent=MS.gene97653 |
| chr4.4 | exon | 48963180 | 48964403 | 48963180 | ID=MS.gene97653.t1.exon1;Parent=MS.gene97653.t1 |
| chr4.4 | CDS | 48963180 | 48964403 | 48963180 | ID=cds.MS.gene97653.t1;Parent=MS.gene97653.t1 |
| Gene Sequence |
| Protein sequence |
