Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97776.t1 | RHN65930.1 | 66.2 | 331 | 36 | 8 | 1 | 256 | 4 | 333 | 1.40E-98 | 369.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97776.t1 | A0A396IKZ4 | 66.2 | 331 | 36 | 8 | 1 | 256 | 4 | 333 | 1.0e-98 | 369.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052020 | MS.gene97776 | 0.804955 | 1.68E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene97776 | 0.802082 | 6.64E-49 | -1.69E-46 |
| MS.gene052863 | MS.gene97776 | 0.81711 | 3.91E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97776.t1 | AT5G48240 | 40.824 | 267 | 106 | 6 | 32 | 253 | 39 | 298 | 2.68e-47 | 160 |
| MS.gene97776.t1 | AT5G48240 | 35.390 | 308 | 112 | 6 | 32 | 253 | 39 | 345 | 8.00e-42 | 147 |
| MS.gene97776.t1 | AT5G48240 | 39.269 | 219 | 88 | 4 | 32 | 205 | 39 | 257 | 7.74e-32 | 119 |
Find 63 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTCACACCTGCTAATTATT+TGG | 0.126188 | 7.3:+82029820 | MS.gene97776:CDS |
| CACTGAAAAGAAGGCTTCTT+TGG | 0.199240 | 7.3:-82031203 | None:intergenic |
| AGACAACTGCCCCTGCTATA+TGG | 0.291848 | 7.3:+82029205 | MS.gene97776:CDS |
| TGTGGTGGCTTCACCACTTT+TGG | 0.294940 | 7.3:-82029096 | None:intergenic |
| CTACACTTATTAGAAACTTT+TGG | 0.302263 | 7.3:-82029850 | None:intergenic |
| GAGGTGGGAAAGAGGAAGTT+TGG | 0.332856 | 7.3:+82029048 | MS.gene97776:CDS |
| GCTGACAAGTTCGAGAATAA+AGG | 0.333106 | 7.3:+82031976 | MS.gene97776:CDS |
| GAGAAGATGAACAACCTTCT+TGG | 0.339326 | 7.3:+82031930 | MS.gene97776:CDS |
| CTATGCATCCCTATTCTTTG+AGG | 0.352998 | 7.3:-82030170 | None:intergenic |
| CTTGTTACAGCTTGCAGAAA+AGG | 0.375354 | 7.3:+82029793 | MS.gene97776:intron |
| TCCCTTGCTTGTGCTTGCAT+TGG | 0.379829 | 7.3:-82031909 | None:intergenic |
| TATGCATCCCTATTCTTTGA+GGG | 0.426789 | 7.3:-82030169 | None:intergenic |
| GGACGCAGAGCGCAAGGTCA+AGG | 0.428212 | 7.3:+82029626 | MS.gene97776:CDS |
| AGAAGATGAACAACCTTCTT+GGG | 0.433478 | 7.3:+82031931 | MS.gene97776:CDS |
| GTGTTAGGGAAGCCAACTAT+TGG | 0.443053 | 7.3:+82031223 | MS.gene97776:CDS |
| GGCTGGACCCCTCAAAGAAT+AGG | 0.448578 | 7.3:+82030161 | MS.gene97776:CDS |
| TGTAGAAAAGCTTGCGGAAG+AGG | 0.455918 | 7.3:+82029605 | MS.gene97776:CDS |
| ATGGAAGTGAGGTGGGAAAG+AGG | 0.457108 | 7.3:+82029040 | MS.gene97776:CDS |
| CTATTAGTATTCCATATAGC+AGG | 0.460489 | 7.3:-82029216 | None:intergenic |
| GCTGGACCCCTCAAAGAATA+GGG | 0.460662 | 7.3:+82030162 | MS.gene97776:CDS |
| CTTCCCTAACACTGAAAAGA+AGG | 0.462487 | 7.3:-82031212 | None:intergenic |
| CAAGTTCGAGAATAAAGGAT+TGG | 0.462911 | 7.3:+82031981 | MS.gene97776:CDS |
| GGAAAAGTTTCTTCATTTGT+TGG | 0.463833 | 7.3:-82029143 | None:intergenic |
| AAGTTTCTTCATTTGTTGGT+TGG | 0.465423 | 7.3:-82029139 | None:intergenic |
| TTTGCAGAGGTGCCAATAGT+TGG | 0.470202 | 7.3:-82031235 | None:intergenic |
| TTGTTACAGCTTGCAGAAAA+GGG | 0.470529 | 7.3:+82029794 | MS.gene97776:intron |
| TGAATCAGATGACATTGAAA+AGG | 0.471688 | 7.3:+82032099 | MS.gene97776:CDS |
| GAAACTTGAAAAGGGTGCAT+TGG | 0.486616 | 7.3:+82032126 | MS.gene97776:CDS |
| GACGCAGAGCGCAAGGTCAA+GGG | 0.490217 | 7.3:+82029627 | MS.gene97776:CDS |
| AGCATAAAATTATCTCGTAA+TGG | 0.495874 | 7.3:-82031956 | None:intergenic |
| AAGTTCGAGAATAAAGGATT+GGG | 0.504352 | 7.3:+82031982 | MS.gene97776:CDS |
| GAAAGAGGAAGTTTGGTAGT+AGG | 0.507605 | 7.3:+82029055 | MS.gene97776:CDS |
| AGAGCGCAAGGTCAAGGGAG+AGG | 0.508044 | 7.3:+82029632 | MS.gene97776:CDS |
| TCAGAAGATGAAAGAGCAGC+AGG | 0.508746 | 7.3:+82029285 | MS.gene97776:CDS |
| AAACACAAGTTGCTCAGAAA+GGG | 0.510831 | 7.3:+82030140 | MS.gene97776:CDS |
| GTGCATTGGCGTGTTTCTAG+TGG | 0.517211 | 7.3:+82032140 | MS.gene97776:CDS |
| AAAACACAAGTTGCTCAGAA+AGG | 0.521430 | 7.3:+82030139 | MS.gene97776:CDS |
| TTCTTGTGGTCTGACAGTAC+TGG | 0.523091 | 7.3:-82029576 | None:intergenic |
| TATACTCACGTGCTCGCTTG+TGG | 0.523202 | 7.3:-82029164 | None:intergenic |
| GGCCAATGCAAGCACAAGCA+AGG | 0.526431 | 7.3:+82031907 | MS.gene97776:intron |
| ACTTTATTCTGTCCGTGTGG+TGG | 0.539904 | 7.3:-82029111 | None:intergenic |
| GCCAATGCAAGCACAAGCAA+GGG | 0.548228 | 7.3:+82031908 | MS.gene97776:CDS |
| TGCGAGTCCAAATAATTAGC+AGG | 0.548925 | 7.3:-82029827 | None:intergenic |
| GTTGAACATGGAAGTGAGGT+GGG | 0.554596 | 7.3:+82029033 | MS.gene97776:CDS |
| ACAAGTTGCTCAGAAAGGGC+TGG | 0.557598 | 7.3:+82030144 | MS.gene97776:CDS |
| TTTCTACAACAAGATTCTTG+TGG | 0.567648 | 7.3:-82029590 | None:intergenic |
| ATGCATCCCTATTCTTTGAG+GGG | 0.570354 | 7.3:-82030168 | None:intergenic |
| AACTATTGGCACCTCTGCAA+AGG | 0.570490 | 7.3:+82031237 | MS.gene97776:CDS |
| GGAAGAGGACGCAGAGCGCA+AGG | 0.578454 | 7.3:+82029620 | MS.gene97776:CDS |
| TATTAGTATTCCATATAGCA+GGG | 0.579667 | 7.3:-82029215 | None:intergenic |
| TCTCGTAATGGAGCCCAAGA+AGG | 0.580268 | 7.3:-82031944 | None:intergenic |
| ATGGCGCAAGTGGTTGAACA+TGG | 0.583568 | 7.3:+82029021 | MS.gene97776:CDS |
| CAAACAATTCATGGCGCAAG+TGG | 0.595838 | 7.3:+82029011 | None:intergenic |
| TCTTGTTGTAGAAAAGCTTG+CGG | 0.611963 | 7.3:+82029599 | MS.gene97776:CDS |
| AAGAATGTTACTGATAAGAA+CGG | 0.615430 | 7.3:+82029327 | MS.gene97776:CDS |
| GGTTGAACATGGAAGTGAGG+TGG | 0.619215 | 7.3:+82029032 | MS.gene97776:CDS |
| CTGACAGATCTTCCTCCTCG+TGG | 0.637768 | 7.3:-82029266 | None:intergenic |
| TGTAACAATCACCTTTGCAG+AGG | 0.648315 | 7.3:-82031248 | None:intergenic |
| TTAACTTTATTCTGTCCGTG+TGG | 0.661100 | 7.3:-82029114 | None:intergenic |
| ATTAGTATTCCATATAGCAG+GGG | 0.676019 | 7.3:-82029214 | None:intergenic |
| AAGTTTGGTAGTAGGAACCA+AGG | 0.681936 | 7.3:+82029063 | MS.gene97776:CDS |
| AAAGTGGTGAAGCCACCACA+CGG | 0.690683 | 7.3:+82029099 | MS.gene97776:CDS |
| AGTGGTTGAACATGGAAGTG+AGG | 0.721910 | 7.3:+82029029 | MS.gene97776:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAGAGTAAATAAATAATT+TGG | - | chr7.3:82031433-82031452 | None:intergenic | 10.0% |
| !! | ATAATTATTGAAAAATAAGA+GGG | + | chr7.3:82031004-82031023 | MS.gene97776:intron | 10.0% |
| !! | TAATAATGATAATAATACAA+AGG | - | chr7.3:82030089-82030108 | None:intergenic | 10.0% |
| !! | TATAATTATTGAAAAATAAG+AGG | + | chr7.3:82031003-82031022 | MS.gene97776:intron | 10.0% |
| !! | TGTATATAAATTCATAAAAT+TGG | - | chr7.3:82031565-82031584 | None:intergenic | 10.0% |
| !! | TTATTAGAGAATTAAAAAAT+TGG | + | chr7.3:82029520-82029539 | MS.gene97776:intron | 10.0% |
| !! | TTGTATTATTATCATTATTA+AGG | + | chr7.3:82030089-82030108 | MS.gene97776:intron | 10.0% |
| !!! | AAGTTTACTATTTTAAATAT+AGG | - | chr7.3:82030535-82030554 | None:intergenic | 10.0% |
| !! | AATAGAAGAAAACAAAATTT+AGG | - | chr7.3:82030048-82030067 | None:intergenic | 15.0% |
| !! | AATGTGTTAAAAAAAAAATG+TGG | - | chr7.3:82030631-82030650 | None:intergenic | 15.0% |
| !! | TAATTATTGAAAAATAAGAG+GGG | + | chr7.3:82031005-82031024 | MS.gene97776:intron | 15.0% |
| !!! | TTTCTTTTTCTTTTAAATTG+AGG | + | chr7.3:82029894-82029913 | MS.gene97776:intron | 15.0% |
| !! | AAAGAAAAAGAAATCTCATT+TGG | + | chr7.3:82030274-82030293 | MS.gene97776:intron | 20.0% |
| !! | AAGAAAAAGAAATCTCATTT+GGG | + | chr7.3:82030275-82030294 | MS.gene97776:intron | 20.0% |
| !! | ATTAATTACCCAAAAAACAA+TGG | - | chr7.3:82030773-82030792 | None:intergenic | 20.0% |
| !! | TAACTTCAAAATATACTTAC+TGG | - | chr7.3:82032019-82032038 | None:intergenic | 20.0% |
| !! | TCATATCACAAAAAAATCTT+CGG | - | chr7.3:82030937-82030956 | None:intergenic | 20.0% |
| !! | TTAAATTGAGGTTTATTCTA+TGG | + | chr7.3:82029906-82029925 | MS.gene97776:intron | 20.0% |
| !! | TTCTTTAATGATAAAACTTG+AGG | + | chr7.3:82030488-82030507 | MS.gene97776:intron | 20.0% |
| !! | TTGATATCACATTAATTTAG+AGG | - | chr7.3:82031626-82031645 | None:intergenic | 20.0% |
| !! | TTTAAAAAAAGTGAATCGAA+AGG | - | chr7.3:82030688-82030707 | None:intergenic | 20.0% |
| !!! | ACATAAATTTTAGTGGTAAT+TGG | - | chr7.3:82029717-82029736 | None:intergenic | 20.0% |
| !!! | CATAAATTTTAGTGGTAATT+GGG | - | chr7.3:82029716-82029735 | None:intergenic | 20.0% |
| !!! | CATTCAACTTATATACATTT+TGG | - | chr7.3:82031403-82031422 | None:intergenic | 20.0% |
| !!! | GCAATCATTTTGAATATATT+AGG | - | chr7.3:82031133-82031152 | None:intergenic | 20.0% |
| !!! | TACCTGATAGATAATATTTT+GGG | - | chr7.3:82029759-82029778 | None:intergenic | 20.0% |
| !!! | TTACCTGATAGATAATATTT+TGG | - | chr7.3:82029760-82029779 | None:intergenic | 20.0% |
| ! | AAATAGTAAACTTAAGAGTC+AGG | + | chr7.3:82030542-82030561 | MS.gene97776:intron | 25.0% |
| ! | AAGAATGTTACTGATAAGAA+CGG | + | chr7.3:82029327-82029346 | MS.gene97776:CDS | 25.0% |
| ! | ACAGATTAGATAGTAAGAAT+TGG | - | chr7.3:82031156-82031175 | None:intergenic | 25.0% |
| ! | ACTTGATGAATAACTCTATA+AGG | + | chr7.3:82029552-82029571 | MS.gene97776:intron | 25.0% |
| ! | AGAAAAAGAAATCTCATTTG+GGG | + | chr7.3:82030276-82030295 | MS.gene97776:intron | 25.0% |
| ! | AGCATAAAATTATCTCGTAA+TGG | - | chr7.3:82031959-82031978 | None:intergenic | 25.0% |
| ! | ATAGGTATGAACAAAAGAAA+AGG | - | chr7.3:82031091-82031110 | None:intergenic | 25.0% |
| ! | CAGATTAGATAGTAAGAATT+GGG | - | chr7.3:82031155-82031174 | None:intergenic | 25.0% |
| ! | CTTCTTTATAATACTCTTGA+AGG | - | chr7.3:82029442-82029461 | None:intergenic | 25.0% |
| ! | TATTAGTATTCCATATAGCA+GGG | - | chr7.3:82029218-82029237 | None:intergenic | 25.0% |
| ! | TTAATTTCTTTCAACTGCTA+TGG | + | chr7.3:82030788-82030807 | MS.gene97776:intron | 25.0% |
| ! | TTGTCAGTATTATGAAATAG+CGG | + | chr7.3:82030349-82030368 | MS.gene97776:intron | 25.0% |
| !! | ACAATAGAACAATTTTACAG+TGG | - | chr7.3:82031691-82031710 | None:intergenic | 25.0% |
| !! | ATCCAAGCAATTTGATAATT+AGG | - | chr7.3:82031875-82031894 | None:intergenic | 25.0% |
| !! | CTACACTTATTAGAAACTTT+TGG | - | chr7.3:82029853-82029872 | None:intergenic | 25.0% |
| !! | GAGATCAACATAAATTTTAG+TGG | - | chr7.3:82029724-82029743 | None:intergenic | 25.0% |
| !! | TCAAACACTGTTTAAAACTA+GGG | + | chr7.3:82031323-82031342 | MS.gene97776:intron | 25.0% |
| !! | TTATCAAATTGCTTGGATTT+TGG | + | chr7.3:82031877-82031896 | MS.gene97776:intron | 25.0% |
| !! | TTCAAACACTGTTTAAAACT+AGG | + | chr7.3:82031322-82031341 | MS.gene97776:intron | 25.0% |
| !! | TTCGGTTTATCTTTTATAGA+GGG | + | chr7.3:82030308-82030327 | MS.gene97776:intron | 25.0% |
| !! | TTCTTTTTCTTTACTTGTGA+CGG | - | chr7.3:82030266-82030285 | None:intergenic | 25.0% |
| !! | TTTCGGTTTATCTTTTATAG+AGG | + | chr7.3:82030307-82030326 | MS.gene97776:intron | 25.0% |
| !!! | AAAGGTTTTGAAACTTGAAA+AGG | + | chr7.3:82032117-82032136 | MS.gene97776:CDS | 25.0% |
| !!! | AAGGTTTTGAAACTTGAAAA+GGG | + | chr7.3:82032118-82032137 | MS.gene97776:CDS | 25.0% |
| !!! | TCGATTCACTTTTTTTAAAG+AGG | + | chr7.3:82030689-82030708 | MS.gene97776:intron | 25.0% |
| AAACTCAGTGTTATCAATAG+AGG | - | chr7.3:82030892-82030911 | None:intergenic | 30.0% | |
| AACACAGAAATAGAACAGAT+AGG | - | chr7.3:82031109-82031128 | None:intergenic | 30.0% | |
| AAGTTCGAGAATAAAGGATT+GGG | + | chr7.3:82031982-82032001 | MS.gene97776:CDS | 30.0% | |
| AGCCCAAAATATTATCTATC+AGG | + | chr7.3:82029754-82029773 | MS.gene97776:intron | 30.0% | |
| ATTAGTATTCCATATAGCAG+GGG | - | chr7.3:82029217-82029236 | None:intergenic | 30.0% | |
| ATTGAAAAATAAGAGGGGTT+GGG | + | chr7.3:82031010-82031029 | MS.gene97776:intron | 30.0% | |
| CTATTAGTATTCCATATAGC+AGG | - | chr7.3:82029219-82029238 | None:intergenic | 30.0% | |
| GGAAAAGTTTCTTCATTTGT+TGG | - | chr7.3:82029146-82029165 | None:intergenic | 30.0% | |
| GGAATTACTAAATTTACCCA+AGG | + | chr7.3:82029396-82029415 | MS.gene97776:intron | 30.0% | |
| GTGTTGAGAGGTTTAAAAAT+AGG | - | chr7.3:82030734-82030753 | None:intergenic | 30.0% | |
| GTTTAGACAAATTACCAAAC+TGG | + | chr7.3:82031715-82031734 | MS.gene97776:intron | 30.0% | |
| TAAGCAATATGATGAGTACA+AGG | - | chr7.3:82032064-82032083 | None:intergenic | 30.0% | |
| TATTGAAAAATAAGAGGGGT+TGG | + | chr7.3:82031009-82031028 | MS.gene97776:intron | 30.0% | |
| TGAATCAGATGACATTGAAA+AGG | + | chr7.3:82032099-82032118 | MS.gene97776:CDS | 30.0% | |
| TGAGAGAAGTTTACGTATTA+GGG | - | chr7.3:82030589-82030608 | None:intergenic | 30.0% | |
| TGCCTAATTATCAAATTGCT+TGG | + | chr7.3:82031870-82031889 | MS.gene97776:intron | 30.0% | |
| TGGGTAAATTTAGTAATTCC+TGG | - | chr7.3:82029396-82029415 | None:intergenic | 30.0% | |
| TTACGTATTAGGGTGATTAA+AGG | - | chr7.3:82030579-82030598 | None:intergenic | 30.0% | |
| TTGAGAGAAGTTTACGTATT+AGG | - | chr7.3:82030590-82030609 | None:intergenic | 30.0% | |
| TTTCTACAACAAGATTCTTG+TGG | - | chr7.3:82029593-82029612 | None:intergenic | 30.0% | |
| ! | AAGTTTCTTCATTTGTTGGT+TGG | - | chr7.3:82029142-82029161 | None:intergenic | 30.0% |
| ! | GCTCTAAGTATGAGTTTAAA+AGG | + | chr7.3:82030958-82030977 | MS.gene97776:intron | 30.0% |
| ! | GTTTGAAGTTATCAACAGAA+AGG | - | chr7.3:82031309-82031328 | None:intergenic | 30.0% |
| ! | TCTTTCAGTCAGTTTTTCAT+TGG | + | chr7.3:82031279-82031298 | MS.gene97776:intron | 30.0% |
| !! | ATATTTTGGGCTACGAAAAT+TGG | - | chr7.3:82029746-82029765 | None:intergenic | 30.0% |
| !!! | GGACTACTTTTGATTTCTTT+CGG | + | chr7.3:82029991-82030010 | MS.gene97776:intron | 30.0% |
| !!! | TCACCACTTTTGGTTTTTTA+CGG | - | chr7.3:82029089-82029108 | None:intergenic | 30.0% |
| AAAAAAAATGTGGCAGAGCA+TGG | - | chr7.3:82030621-82030640 | None:intergenic | 35.0% | |
| AAAACACAAGTTGCTCAGAA+AGG | + | chr7.3:82030139-82030158 | MS.gene97776:CDS | 35.0% | |
| AAACACAAGTTGCTCAGAAA+GGG | + | chr7.3:82030140-82030159 | MS.gene97776:CDS | 35.0% | |
| AACTAGGGTTAGAACTGATT+AGG | + | chr7.3:82031338-82031357 | MS.gene97776:intron | 35.0% | |
| ACAACAGTGAAATCAGTAAG+AGG | - | chr7.3:82029962-82029981 | None:intergenic | 35.0% | |
| AGAAGATGAACAACCTTCTT+GGG | + | chr7.3:82031931-82031950 | MS.gene97776:CDS | 35.0% | |
| CAAGTTCGAGAATAAAGGAT+TGG | + | chr7.3:82031981-82032000 | MS.gene97776:CDS | 35.0% | |
| CATCATATTGCTTAACTGCA+GGG | + | chr7.3:82032070-82032089 | MS.gene97776:intron | 35.0% | |
| CATTTGGGGATTCATTGTTT+CGG | + | chr7.3:82030290-82030309 | MS.gene97776:intron | 35.0% | |
| CTAAATTCCGTTGAAGAACA+AGG | + | chr7.3:82031373-82031392 | MS.gene97776:intron | 35.0% | |
| CTAATAAGTGTAGCGACAAA+AGG | + | chr7.3:82029860-82029879 | MS.gene97776:intron | 35.0% | |
| CTTGAATGCTTTACAACCTT+GGG | - | chr7.3:82029415-82029434 | None:intergenic | 35.0% | |
| GTGTTATCAATAGAGGATAG+TGG | - | chr7.3:82030885-82030904 | None:intergenic | 35.0% | |
| TATGCATCCCTATTCTTTGA+GGG | - | chr7.3:82030172-82030191 | None:intergenic | 35.0% | |
| TCAAAGAATAGGGATGCATA+GGG | + | chr7.3:82030172-82030191 | MS.gene97776:intron | 35.0% | |
| TCATCATATTGCTTAACTGC+AGG | + | chr7.3:82032069-82032088 | MS.gene97776:intron | 35.0% | |
| TCTTGAATGCTTTACAACCT+TGG | - | chr7.3:82029416-82029435 | None:intergenic | 35.0% | |
| TGGTTGTTGTAGCATCTATA+GGG | + | chr7.3:82030452-82030471 | MS.gene97776:intron | 35.0% | |
| TGTCACACCTGCTAATTATT+TGG | + | chr7.3:82029820-82029839 | MS.gene97776:CDS | 35.0% | |
| TGTTCAAAGTTCAACCAGTT+TGG | - | chr7.3:82031732-82031751 | None:intergenic | 35.0% | |
| TTAACTTTATTCTGTCCGTG+TGG | - | chr7.3:82029117-82029136 | None:intergenic | 35.0% | |
| TTCTTAGAAGACGATGATGA+TGG | + | chr7.3:82029354-82029373 | MS.gene97776:intron | 35.0% | |
| TTGTTACAGCTTGCAGAAAA+GGG | + | chr7.3:82029794-82029813 | MS.gene97776:intron | 35.0% | |
| TTTAGTACACTCTGCTTTCA+TGG | + | chr7.3:82031759-82031778 | MS.gene97776:intron | 35.0% | |
| TTTCACTGTTGTTGTGAACA+TGG | + | chr7.3:82029970-82029989 | MS.gene97776:intron | 35.0% | |
| ! | AAGCCTTCTTTTCAGTGTTA+GGG | + | chr7.3:82031209-82031228 | MS.gene97776:CDS | 35.0% |
| ! | AGGTTGTAAAGCATTCAAGA+TGG | + | chr7.3:82029416-82029435 | MS.gene97776:intron | 35.0% |
| ! | TATTCCACATAGCAGACTTT+TGG | + | chr7.3:82030845-82030864 | MS.gene97776:intron | 35.0% |
| ! | TCTTGTTGTAGAAAAGCTTG+CGG | + | chr7.3:82029599-82029618 | MS.gene97776:CDS | 35.0% |
| ! | TTTGATAATTAGGCAAGCGA+TGG | - | chr7.3:82031865-82031884 | None:intergenic | 35.0% |
| !! | CTGCATAATAAAGTGTTGAG+AGG | - | chr7.3:82030746-82030765 | None:intergenic | 35.0% |
| !! | GCATTTGCTTTTGTACACTT+TGG | + | chr7.3:82031462-82031481 | MS.gene97776:intron | 35.0% |
| !!! | CTACTTTTGATTTCTTTCGG+TGG | + | chr7.3:82029994-82030013 | MS.gene97776:intron | 35.0% |
| !!! | GCAGCATACCATTGTTTTTT+GGG | + | chr7.3:82030762-82030781 | MS.gene97776:intron | 35.0% |
| !!! | TGCAGCATACCATTGTTTTT+TGG | + | chr7.3:82030761-82030780 | MS.gene97776:intron | 35.0% |
| AAACAAGTGTTCCTTGAACG+AGG | + | chr7.3:82031831-82031850 | MS.gene97776:intron | 40.0% | |
| AACACCAAAAGTCTGCTATG+TGG | - | chr7.3:82030852-82030871 | None:intergenic | 40.0% | |
| AATAGGTCATATGCAGCTCA+CGG | - | chr7.3:82030415-82030434 | None:intergenic | 40.0% | |
| AATTCCGTTGAAGAACAAGG+AGG | + | chr7.3:82031376-82031395 | MS.gene97776:intron | 40.0% | |
| AGATGCTACAACAACCAGTA+TGG | - | chr7.3:82030449-82030468 | None:intergenic | 40.0% | |
| AGGCCGTAAAAAACCAAAAG+TGG | + | chr7.3:82029083-82029102 | MS.gene97776:CDS | 40.0% | |
| ATAAGTGTAGCGACAAAAGG+AGG | + | chr7.3:82029863-82029882 | MS.gene97776:intron | 40.0% | |
| ATATGACCTATTTGGGCCTT+TGG | + | chr7.3:82030423-82030442 | MS.gene97776:intron | 40.0% | |
| ATGCATCCCTATTCTTTGAG+GGG | - | chr7.3:82030171-82030190 | None:intergenic | 40.0% | |
| CACTGAAAAGAAGGCTTCTT+TGG | - | chr7.3:82031206-82031225 | None:intergenic | 40.0% | |
| CTATGCATCCCTATTCTTTG+AGG | - | chr7.3:82030173-82030192 | None:intergenic | 40.0% | |
| CTCAAAGAATAGGGATGCAT+AGG | + | chr7.3:82030171-82030190 | MS.gene97776:intron | 40.0% | |
| CTGGTTGTTGTAGCATCTAT+AGG | + | chr7.3:82030451-82030470 | MS.gene97776:intron | 40.0% | |
| CTTCCCTAACACTGAAAAGA+AGG | - | chr7.3:82031215-82031234 | None:intergenic | 40.0% | |
| CTTGTTACAGCTTGCAGAAA+AGG | + | chr7.3:82029793-82029812 | MS.gene97776:intron | 40.0% | |
| GAGAAGATGAACAACCTTCT+TGG | + | chr7.3:82031930-82031949 | MS.gene97776:CDS | 40.0% | |
| GAGCTGCATATGACCTATTT+GGG | + | chr7.3:82030416-82030435 | MS.gene97776:intron | 40.0% | |
| GCTGACAAGTTCGAGAATAA+AGG | + | chr7.3:82031976-82031995 | MS.gene97776:CDS | 40.0% | |
| GGCAAAAAAGGAAAAGCTGA+TGG | + | chr7.3:82029653-82029672 | MS.gene97776:CDS | 40.0% | |
| GTTCTATATACACCTGTTGC+AGG | + | chr7.3:82030111-82030130 | MS.gene97776:intron | 40.0% | |
| TATGATGAGTACAAGGTAGC+AGG | - | chr7.3:82032057-82032076 | None:intergenic | 40.0% | |
| TGAAACTGAGAACTCTGACA+GGG | - | chr7.3:82031068-82031087 | None:intergenic | 40.0% | |
| TGAGCTGCATATGACCTATT+TGG | + | chr7.3:82030415-82030434 | MS.gene97776:intron | 40.0% | |
| TGATGACTTCTTGGTAAGCT+AGG | + | chr7.3:82029470-82029489 | MS.gene97776:intron | 40.0% | |
| TGCGAGTCCAAATAATTAGC+AGG | - | chr7.3:82029830-82029849 | None:intergenic | 40.0% | |
| TGGAAGTTATACCTCGTTCA+AGG | - | chr7.3:82031845-82031864 | None:intergenic | 40.0% | |
| TGTAACAATCACCTTTGCAG+AGG | - | chr7.3:82031251-82031270 | None:intergenic | 40.0% | |
| TTTCACCAAAAAACACCACG+AGG | + | chr7.3:82029251-82029270 | MS.gene97776:CDS | 40.0% | |
| ! | AAGTTTGGTAGTAGGAACCA+AGG | + | chr7.3:82029063-82029082 | MS.gene97776:CDS | 40.0% |
| ! | GAAACTTGAAAAGGGTGCAT+TGG | + | chr7.3:82032126-82032145 | MS.gene97776:CDS | 40.0% |
| ! | GAAAGAGGAAGTTTGGTAGT+AGG | + | chr7.3:82029055-82029074 | MS.gene97776:CDS | 40.0% |
| ! | GAAGCCTTCTTTTCAGTGTT+AGG | + | chr7.3:82031208-82031227 | MS.gene97776:CDS | 40.0% |
| ! | GAGTGTTTCTGATGACTTCT+TGG | + | chr7.3:82029461-82029480 | MS.gene97776:intron | 40.0% |
| ! | TGCTTGGATTTTGGATATGC+AGG | + | chr7.3:82031886-82031905 | MS.gene97776:intron | 40.0% |
| ! | TGGTTCTATTTGGAAGAGCA+TGG | - | chr7.3:82031044-82031063 | None:intergenic | 40.0% |
| !! | TTTTAAAGAGGCAGCATGTG+AGG | + | chr7.3:82030701-82030720 | MS.gene97776:intron | 40.0% |
| !!! | CTTTTGGTTTTTTACGGCCT+TGG | - | chr7.3:82029083-82029102 | None:intergenic | 40.0% |
| AAATAAGAGGGGTTGGGACT+TGG | + | chr7.3:82031016-82031035 | MS.gene97776:intron | 45.0% | |
| AACTATTGGCACCTCTGCAA+AGG | + | chr7.3:82031237-82031256 | MS.gene97776:CDS | 45.0% | |
| AATAAGAGGGGTTGGGACTT+GGG | + | chr7.3:82031017-82031036 | MS.gene97776:intron | 45.0% | |
| ACAACAACCAGTATGGCCAA+AGG | - | chr7.3:82030442-82030461 | None:intergenic | 45.0% | |
| ACTTTATTCTGTCCGTGTGG+TGG | - | chr7.3:82029114-82029133 | None:intergenic | 45.0% | |
| AGTGGTTGAACATGGAAGTG+AGG | + | chr7.3:82029029-82029048 | MS.gene97776:CDS | 45.0% | |
| ATAGCGGCTCTTTAGCATAG+AGG | + | chr7.3:82030365-82030384 | MS.gene97776:intron | 45.0% | |
| GTACACTCTGCTTTCATGGA+AGG | + | chr7.3:82031763-82031782 | MS.gene97776:intron | 45.0% | |
| GTGAAACTGAGAACTCTGAC+AGG | - | chr7.3:82031069-82031088 | None:intergenic | 45.0% | |
| GTGTTAGGGAAGCCAACTAT+TGG | + | chr7.3:82031223-82031242 | MS.gene97776:CDS | 45.0% | |
| GTTGAACATGGAAGTGAGGT+GGG | + | chr7.3:82029033-82029052 | MS.gene97776:CDS | 45.0% | |
| TCAGAAGATGAAAGAGCAGC+AGG | + | chr7.3:82029285-82029304 | MS.gene97776:CDS | 45.0% | |
| TGGTCCTCCTTGTTCTTCAA+CGG | - | chr7.3:82031383-82031402 | None:intergenic | 45.0% | |
| TGTAGAAAAGCTTGCGGAAG+AGG | + | chr7.3:82029605-82029624 | MS.gene97776:CDS | 45.0% | |
| TTCTTGTGGTCTGACAGTAC+TGG | - | chr7.3:82029579-82029598 | None:intergenic | 45.0% | |
| TTGTCCTCCTCTTCCATTTC+CGG | + | chr7.3:82030649-82030668 | MS.gene97776:intron | 45.0% | |
| ! | CTGACAGGGATGGTTCTATT+TGG | - | chr7.3:82031054-82031073 | None:intergenic | 45.0% |
| !! | GTGTTTTGTTGACCTGCAAC+AGG | - | chr7.3:82030126-82030145 | None:intergenic | 45.0% |
| !! | TTTGCAGAGGTGCCAATAGT+TGG | - | chr7.3:82031238-82031257 | None:intergenic | 45.0% |
| !!! | TTCCTCCTCGTGGTGTTTTT+TGG | - | chr7.3:82029259-82029278 | None:intergenic | 45.0% |
| !! | TCAATAATTATATAATTATA+AGG | - | chr7.3:82030995-82031014 | None:intergenic | 5.0% |
| !!! | TATTATTTTCTTTTTTTATT+AGG | + | chr7.3:82031661-82031680 | MS.gene97776:intron | 5.0% |
| AAAGTGGTGAAGCCACCACA+CGG | + | chr7.3:82029099-82029118 | MS.gene97776:CDS | 50.0% | |
| ACAAGTTGCTCAGAAAGGGC+TGG | + | chr7.3:82030144-82030163 | MS.gene97776:CDS | 50.0% | |
| ACTGAGAACTCTGACAGGGA+TGG | - | chr7.3:82031064-82031083 | None:intergenic | 50.0% | |
| AGACAACTGCCCCTGCTATA+TGG | + | chr7.3:82029205-82029224 | MS.gene97776:CDS | 50.0% | |
| ATGGAAGTGAGGTGGGAAAG+AGG | + | chr7.3:82029040-82029059 | MS.gene97776:CDS | 50.0% | |
| ATGGCGCAAGTGGTTGAACA+TGG | + | chr7.3:82029021-82029040 | MS.gene97776:CDS | 50.0% | |
| ATTTGGGCCTTTGGCCATAC+TGG | + | chr7.3:82030432-82030451 | MS.gene97776:intron | 50.0% | |
| CACCAAAAAACACCACGAGG+AGG | + | chr7.3:82029254-82029273 | MS.gene97776:CDS | 50.0% | |
| GAAAGGTTCATCCTCCTCAC+CGG | - | chr7.3:82030671-82030690 | None:intergenic | 50.0% | |
| GAGGTGGGAAAGAGGAAGTT+TGG | + | chr7.3:82029048-82029067 | MS.gene97776:CDS | 50.0% | |
| GCCAATGCAAGCACAAGCAA+GGG | + | chr7.3:82031908-82031927 | MS.gene97776:CDS | 50.0% | |
| GCTGGACCCCTCAAAGAATA+GGG | + | chr7.3:82030162-82030181 | MS.gene97776:CDS | 50.0% | |
| GGTCAAGGGAGAGGCAAAAA+AGG | + | chr7.3:82029641-82029660 | MS.gene97776:CDS | 50.0% | |
| GGTTGAACATGGAAGTGAGG+TGG | + | chr7.3:82029032-82029051 | MS.gene97776:CDS | 50.0% | |
| GTATGGCCAAAGGCCCAAAT+AGG | - | chr7.3:82030432-82030451 | None:intergenic | 50.0% | |
| TATACTCACGTGCTCGCTTG+TGG | - | chr7.3:82029167-82029186 | None:intergenic | 50.0% | |
| TCCCTTGCTTGTGCTTGCAT+TGG | - | chr7.3:82031912-82031931 | None:intergenic | 50.0% | |
| TTCATCCTCCTCACCGGAAA+TGG | - | chr7.3:82030665-82030684 | None:intergenic | 50.0% | |
| ! | TCTCGTAATGGAGCCCAAGA+AGG | - | chr7.3:82031947-82031966 | None:intergenic | 50.0% |
| ! | TGTGGTGGCTTCACCACTTT+TGG | - | chr7.3:82029099-82029118 | None:intergenic | 50.0% |
| CTCACCGGAAATGGAAGAGG+AGG | - | chr7.3:82030656-82030675 | None:intergenic | 55.0% | |
| CTCCTCACCGGAAATGGAAG+AGG | - | chr7.3:82030659-82030678 | None:intergenic | 55.0% | |
| CTCCTCTTCCATTTCCGGTG+AGG | + | chr7.3:82030654-82030673 | MS.gene97776:intron | 55.0% | |
| CTCTTCCATTTCCGGTGAGG+AGG | + | chr7.3:82030657-82030676 | MS.gene97776:intron | 55.0% | |
| CTGACAGATCTTCCTCCTCG+TGG | - | chr7.3:82029269-82029288 | None:intergenic | 55.0% | |
| GGCCAATGCAAGCACAAGCA+AGG | + | chr7.3:82031907-82031926 | MS.gene97776:intron | 55.0% | |
| GGCTGGACCCCTCAAAGAAT+AGG | + | chr7.3:82030161-82030180 | MS.gene97776:CDS | 55.0% | |
| ! | GGTGATGACGAGATTCAGCC+AGG | + | chr7.3:82029375-82029394 | MS.gene97776:intron | 55.0% |
| AGAGCGCAAGGTCAAGGGAG+AGG | + | chr7.3:82029632-82029651 | MS.gene97776:CDS | 60.0% | |
| GACGCAGAGCGCAAGGTCAA+GGG | + | chr7.3:82029627-82029646 | MS.gene97776:CDS | 60.0% | |
| GGAAGAGGACGCAGAGCGCA+AGG | + | chr7.3:82029620-82029639 | MS.gene97776:CDS | 65.0% | |
| GGACGCAGAGCGCAAGGTCA+AGG | + | chr7.3:82029626-82029645 | MS.gene97776:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 82029021 | 82032159 | 82029021 | ID=MS.gene97776 |
| chr7.3 | mRNA | 82029021 | 82032159 | 82029021 | ID=MS.gene97776.t1;Parent=MS.gene97776 |
| chr7.3 | exon | 82029021 | 82029348 | 82029021 | ID=MS.gene97776.t1.exon1;Parent=MS.gene97776.t1 |
| chr7.3 | CDS | 82029021 | 82029348 | 82029021 | ID=cds.MS.gene97776.t1;Parent=MS.gene97776.t1 |
| chr7.3 | exon | 82029574 | 82029674 | 82029574 | ID=MS.gene97776.t1.exon2;Parent=MS.gene97776.t1 |
| chr7.3 | CDS | 82029574 | 82029674 | 82029574 | ID=cds.MS.gene97776.t1;Parent=MS.gene97776.t1 |
| chr7.3 | exon | 82029803 | 82029868 | 82029803 | ID=MS.gene97776.t1.exon3;Parent=MS.gene97776.t1 |
| chr7.3 | CDS | 82029803 | 82029868 | 82029803 | ID=cds.MS.gene97776.t1;Parent=MS.gene97776.t1 |
| chr7.3 | exon | 82030022 | 82030033 | 82030022 | ID=MS.gene97776.t1.exon4;Parent=MS.gene97776.t1 |
| chr7.3 | CDS | 82030022 | 82030033 | 82030022 | ID=cds.MS.gene97776.t1;Parent=MS.gene97776.t1 |
| chr7.3 | exon | 82030133 | 82030186 | 82030133 | ID=MS.gene97776.t1.exon5;Parent=MS.gene97776.t1 |
| chr7.3 | CDS | 82030133 | 82030186 | 82030133 | ID=cds.MS.gene97776.t1;Parent=MS.gene97776.t1 |
| chr7.3 | exon | 82031196 | 82031258 | 82031196 | ID=MS.gene97776.t1.exon6;Parent=MS.gene97776.t1 |
| chr7.3 | CDS | 82031196 | 82031258 | 82031196 | ID=cds.MS.gene97776.t1;Parent=MS.gene97776.t1 |
| chr7.3 | exon | 82031908 | 82032018 | 82031908 | ID=MS.gene97776.t1.exon7;Parent=MS.gene97776.t1 |
| chr7.3 | CDS | 82031908 | 82032018 | 82031908 | ID=cds.MS.gene97776.t1;Parent=MS.gene97776.t1 |
| chr7.3 | exon | 82032091 | 82032159 | 82032091 | ID=MS.gene97776.t1.exon8;Parent=MS.gene97776.t1 |
| chr7.3 | CDS | 82032091 | 82032159 | 82032091 | ID=cds.MS.gene97776.t1;Parent=MS.gene97776.t1 |
| Gene Sequence |
| Protein sequence |
