AlfalfaGEDB | MS.gene97776

M. sativa cultivar XinJiangDaYe / MS.gene97776

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene97776.t1	RHN65930.1	66.2	331	36	8	1	256	4	333	1.40E-98	369.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene97776.t1	A0A396IKZ4	66.2	331	36	8	1	256	4	333	1.0e-98	369.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene052020	MS.gene97776	0.804955	1.68E-49	-1.69E-46
MS.gene052519	MS.gene97776	0.802082	6.64E-49	-1.69E-46
MS.gene052863	MS.gene97776	0.81711	3.91E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene97776.t1	AT5G48240	40.824	267	106	6	32	253	39	298	2.68e-47	160
MS.gene97776.t1	AT5G48240	35.390	308	112	6	32	253	39	345	8.00e-42	147
MS.gene97776.t1	AT5G48240	39.269	219	88	4	32	205	39	257	7.74e-32	119

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Find 63 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACAAGTTGCTCAGAA+AGG	0.521430	7.3:+82030139	MS.gene97776:CDS
AAACACAAGTTGCTCAGAAA+GGG	0.510831	7.3:+82030140	MS.gene97776:CDS
AAAGTGGTGAAGCCACCACA+CGG	0.690683	7.3:+82029099	MS.gene97776:CDS
AACTATTGGCACCTCTGCAA+AGG	0.570490	7.3:+82031237	MS.gene97776:CDS
AAGAATGTTACTGATAAGAA+CGG	0.615430	7.3:+82029327	MS.gene97776:CDS
AAGTTCGAGAATAAAGGATT+GGG	0.504352	7.3:+82031982	MS.gene97776:CDS
AAGTTTCTTCATTTGTTGGT+TGG	0.465423	7.3:-82029139	None:intergenic
AAGTTTGGTAGTAGGAACCA+AGG	0.681936	7.3:+82029063	MS.gene97776:CDS
ACAAGTTGCTCAGAAAGGGC+TGG	0.557598	7.3:+82030144	MS.gene97776:CDS
ACTTTATTCTGTCCGTGTGG+TGG	0.539904	7.3:-82029111	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTCAGTGTTATCAATAG+AGG	-	chr7.3:82030892-82030911	None:intergenic	30.0%
AACACAGAAATAGAACAGAT+AGG	-	chr7.3:82031109-82031128	None:intergenic	30.0%
AAGTTCGAGAATAAAGGATT+GGG	+	chr7.3:82031982-82032001	MS.gene97776:CDS	30.0%
AGCCCAAAATATTATCTATC+AGG	+	chr7.3:82029754-82029773	MS.gene97776:intron	30.0%
ATTAGTATTCCATATAGCAG+GGG	-	chr7.3:82029217-82029236	None:intergenic	30.0%
ATTGAAAAATAAGAGGGGTT+GGG	+	chr7.3:82031010-82031029	MS.gene97776:intron	30.0%
CTATTAGTATTCCATATAGC+AGG	-	chr7.3:82029219-82029238	None:intergenic	30.0%
GGAAAAGTTTCTTCATTTGT+TGG	-	chr7.3:82029146-82029165	None:intergenic	30.0%
GGAATTACTAAATTTACCCA+AGG	+	chr7.3:82029396-82029415	MS.gene97776:intron	30.0%
GTGTTGAGAGGTTTAAAAAT+AGG	-	chr7.3:82030734-82030753	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	82029021	82032159	82029021	ID=MS.gene97776
chr7.3	mRNA	82029021	82032159	82029021	ID=MS.gene97776.t1;Parent=MS.gene97776
chr7.3	exon	82029021	82029348	82029021	ID=MS.gene97776.t1.exon1;Parent=MS.gene97776.t1
chr7.3	CDS	82029021	82029348	82029021	ID=cds.MS.gene97776.t1;Parent=MS.gene97776.t1
chr7.3	exon	82029574	82029674	82029574	ID=MS.gene97776.t1.exon2;Parent=MS.gene97776.t1
chr7.3	CDS	82029574	82029674	82029574	ID=cds.MS.gene97776.t1;Parent=MS.gene97776.t1
chr7.3	exon	82029803	82029868	82029803	ID=MS.gene97776.t1.exon3;Parent=MS.gene97776.t1
chr7.3	CDS	82029803	82029868	82029803	ID=cds.MS.gene97776.t1;Parent=MS.gene97776.t1
chr7.3	exon	82030022	82030033	82030022	ID=MS.gene97776.t1.exon4;Parent=MS.gene97776.t1
chr7.3	CDS	82030022	82030033	82030022	ID=cds.MS.gene97776.t1;Parent=MS.gene97776.t1
chr7.3	exon	82030133	82030186	82030133	ID=MS.gene97776.t1.exon5;Parent=MS.gene97776.t1
chr7.3	CDS	82030133	82030186	82030133	ID=cds.MS.gene97776.t1;Parent=MS.gene97776.t1
chr7.3	exon	82031196	82031258	82031196	ID=MS.gene97776.t1.exon6;Parent=MS.gene97776.t1
chr7.3	CDS	82031196	82031258	82031196	ID=cds.MS.gene97776.t1;Parent=MS.gene97776.t1
chr7.3	exon	82031908	82032018	82031908	ID=MS.gene97776.t1.exon7;Parent=MS.gene97776.t1
chr7.3	CDS	82031908	82032018	82031908	ID=cds.MS.gene97776.t1;Parent=MS.gene97776.t1
chr7.3	exon	82032091	82032159	82032091	ID=MS.gene97776.t1.exon8;Parent=MS.gene97776.t1
chr7.3	CDS	82032091	82032159	82032091	ID=cds.MS.gene97776.t1;Parent=MS.gene97776.t1

Gene Sequence

>MS.gene97776

ATGGCGCAAGTGGTTGAACATGGAAGTGAGGTGGGAAAGAGGAAGTTTGGTAGTAGGAACCAAGGCCGTAAAAAACCAAAAGTGGTGAAGCCACCACACGGACAGAATAAAGTTAAAACCAACCAACAAATGAAGAAACTTTTCCACAAGCGAGCACGTGAGTATAATTCTGATGAAGATCATGAGACAACTGCCCCTGCTATATGGAATACTAATAGAGATGTAGTATCTTTCACCAAAAAACACCACGAGGAGGAAGATCTGTCAGAAGATGAAAGAGCAGCAGGAAGACAAAGAACACAGAAGAAGAATGTTACTGATAAGAACGGTAATTTCTTAGAAGACGATGATGATGGTGATGACGAGATTCAGCCAGGAATTACTAAATTTACCCAAGGTTGTAAAGCATTCAAGATGGCCTTCAAGAGTATTATAAAGAAGAGTGTTTCTGATGACTTCTTGGTAAGCTAGGTGATCATATATCATTCATGTAAATGTTTTATTAGAGAATTAAAAAATTGGTTTTCTAAAACTTGATGAATAACTCTATAAGGTCCAGTACTGTCAGACCACAAGAATCTTGTTGTAGAAAAGCTTGCGGAAGAGGACGCAGAGCGCAAGGTCAAGGGAGAGGCAAAAAAGGAAAAGCTGATGGTAATTTTTAATTTCAACTTGACTCATTTTTATGATATCCCAATTACCACTAAAATTTATGTTGATCTCCAATTTTCGTAGCCCAAAATATTATCTATCAGGTAAGCTTTCTAACTTACTTGTTACAGCTTGCAGAAAAGGGACATGTCACACCTGCTAATTATTTGGACTCGCACCAAAAGTTTCTAATAAGTGTAGCGACAAAAGGAGGTAACTGAGTTTCTTTTTCTTTTAAATTGAGGTTTATTCTATGGCTTCTTTATTTTTATTAGTGACTTGCATTTCCTCTTACTGATTTCACTGTTGTTGTGAACATGGACTACTTTTGATTTCTTTCGGTGGTTAAGTTGTTCAACGCTGTAAGTTTTATCCTAAATTTTGTTTTCTTCTATTTTTTCTACTCTCTTTGTTCCTTTGTATTATTATCATTATTAAGGTTCTATATACACCTGTTGCAGGTCAACAAAACACAAGTTGCTCAGAAAGGGCTGGACCCCTCAAAGAATAGGGATGCATAGGGTAAGTTGTTTTATGCTGCAACAACAAAATGCAAGTAAAGAAAAAGTTAGTAGTTCACTTGCAGCAAAACCGTCACAAGTAAAGAAAAAGAAATCTCATTTGGGGATTCATTGTTTCGGTTTATCTTTTATAGAGGGAAATTTGATGCAACTGTTTTGTCAGTATTATGAAATAGCGGCTCTTTAGCATAGAGGATTTTGACGAATTCACTATGAAAACCGTGAGCTGCATATGACCTATTTGGGCCTTTGGCCATACTGGTTGTTGTAGCATCTATAGGGAAAAGAAAATGTTTTCTTTAATGATAAAACTTGAGGCAGCATGTGAGCTGTATATGACCTATATTTAAAATAGTAAACTTAAGAGTCAGGATGTGATTATTCCTTTAATCACCCTAATACGTAAACTTCTCTCAATATTTAAACCATGCTCTGCCACATTTTTTTTTTAACACATTGTCCTCCTCTTCCATTTCCGGTGAGGAGGATGAACCTTTCGATTCACTTTTTTTAAAGAGGCAGCATGTGAGGTGCAAAACCTATTTTTAAACCTCTCAACACTTTATTATGCAGCATACCATTGTTTTTTGGGTAATTAATTTCTTTCAACTGCTATGGTACTTCTGCTATTTGTCTGCAATGCTATATCTGCTATTCCACATAGCAGACTTTTGGTGTTTCACTATTTTCCACTATCCTCTATTGATAACACTGAGTTTTGTATATGATATAACTACTATGCCGAAGATTTTTTTGTGATATGATGCTCTAAGTATGAGTTTAAAAGGTTAGCAATTAACCTTATAATTATATAATTATTGAAAAATAAGAGGGGTTGGGACTTGGGACCATGCTCTTCCAAATAGAACCATCCCTGTCAGAGTTCTCAGTTTCACCTTTTCTTTTGTTCATACCTATCTGTTCTATTTCTGTGTTTCCTAATATATTCAAAATGATTGCCCAATTCTTACTATCTAATCTGTGTGTTCTGTCAGTTATAAAGAAGCGCACCAAAGAAGCCTTCTTTTCAGTGTTAGGGAAGCCAACTATTGGCACCTCTGCAAAGGTGATTGTTACAACTTGTTCTCTTTCAGTCAGTTTTTCATTGGAAGTCCTTTCTGTTGATAACTTCAAACACTGTTTAAAACTAGGGTTAGAACTGATTAGGTCTATGAGTATGCTAAATTCCGTTGAAGAACAAGGAGGACCAAAATGTATATAAGTTGAATGCTCAAGTCCAAATTATTTATTTACTCTATTTAGACTTGAGCATTTGCTTTTGTACACTTTGGTTCTCTTTATTCGAAGAAATGTATGAAACTCAGAGAGCTTGAAGAAATTTGAATTTCTTTTTTGCAATTCTATACATCCAATTTTATGAATTTATATACATAAATGTCTATTTTCTCTTTAGAACTATTAGTTGATGACCTCTAAATTAATGTGATATCAAACATGTTTATTTTTATATTATTTTCTTTTTTTATTAGGTCTTCCACTGTAAAATTGTTCTATTGTATATGTTTAGACAAATTACCAAACTGGTTGAACTTTGAACATGATGTTTTTAGTACACTCTGCTTTCATGGAAGGAGTAACATAATAAGAAATTGTTATATATCAACATTATTATGTTTAAAACAAGTGTTCCTTGAACGAGGTATAACTTCCATCGCTTGCCTAATTATCAAATTGCTTGGATTTTGGATATGCAGGCCAATGCAAGCACAAGCAAGGGAGAAGATGAACAACCTTCTTGGGCTCCATTACGAGATAATTTTATGCTGACAAGTTCGAGAATAAAGGATTGGGACAAAAACATGCCAGTAAGTATATTTTGAAGTTACTATTATACTATGATCCTGCTACCTTGTACTCATCATATTGCTTAACTGCAGGGTAAAAATGAATCAGATGACATTGAAAAGGTTTTGAAACTTGAAAAGGGTGCATTGGCGTGTTTCTAG

Protein sequence

>MS.gene97776.t1

MAQVVEHGSEVGKRKFGSRNQGRKKPKVVKPPHGQNKVKTNQQMKKLFHKRAREYNSDEDHETTAPAIWNTNRDVVSFTKKHHEEEDLSEDERAAGRQRTQKKNVTDKNGPVLSDHKNLVVEKLAEEDAERKVKGEAKKEKLMLAEKGHVTPANYLDSHQKFLISLFNAVNKTQVAQKGLDPSKNRDKRTKEAFFSVLGKPTIGTSAKANASTSKGEDEQPSWAPLRDNFMLTSSRIKDWDKNMPGKNESDDIEKVLKLEKGALACF