AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene98033

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98033.t1 MTR_7g018240 95.541 628 28 0 1 628 1 628 0.0 1235
MS.gene98033.t1 MTR_4g104830 30.731 602 397 6 33 628 50 637 8.36e-95 305
MS.gene98033.t1 MTR_4g104790 33.026 542 354 5 87 622 90 628 7.67e-92 296
MS.gene98033.t1 MTR_4g104800 30.586 546 372 3 87 628 95 637 1.68e-89 291
MS.gene98033.t1 MTR_7g018270 40.000 480 185 15 1 475 1 382 4.55e-80 258
MS.gene98033.t1 MTR_5g092040 28.211 436 239 8 182 602 124 500 2.19e-44 166
MS.gene98033.t1 MTR_4g104860 33.333 198 132 0 229 426 1 198 1.48e-32 125
MS.gene98033.t1 MTR_0252s0060 26.076 395 219 7 219 561 42 415 4.13e-31 127
MS.gene98033.t1 MTR_1g055295 21.564 422 322 7 186 602 623 1040 2.80e-22 102
MS.gene98033.t1 MTR_5g095130 23.684 418 299 9 196 607 74 477 8.24e-21 97.8
MS.gene98033.t1 MTR_5g095130 19.633 545 306 10 76 586 86 532 8.76e-11 65.5
MS.gene98033.t1 MTR_4g068360 24.297 391 236 11 238 581 235 612 5.00e-18 88.6
MS.gene98033.t1 MTR_1g108270 21.445 443 299 10 196 596 63 498 5.79e-18 87.8
MS.gene98033.t1 MTR_4g108650 24.650 357 251 9 237 584 268 615 3.61e-17 86.3
MS.gene98033.t1 MTR_3g100600 21.925 374 241 8 235 598 109 441 1.23e-16 84.0
MS.gene98033.t1 MTR_3g100600 20.858 513 353 15 32 538 52 517 1.41e-12 70.9
MS.gene98033.t1 MTR_3g115270 21.589 491 317 14 121 590 172 615 2.09e-16 83.6
MS.gene98033.t1 MTR_3g088505 23.096 407 269 12 218 586 59 459 3.61e-16 82.0
MS.gene98033.t1 MTR_3g088505 23.874 444 298 9 87 528 61 466 6.88e-14 74.7
MS.gene98033.t1 MTR_2g018550 23.864 352 259 7 237 585 390 735 5.26e-16 82.4
MS.gene98033.t1 MTR_8g105170 23.196 388 278 12 242 619 334 711 6.44e-16 82.4
MS.gene98033.t1 MTR_8g071300 23.227 409 297 10 195 594 86 486 1.06e-15 81.3
MS.gene98033.t1 MTR_1g033960 25.434 346 240 8 247 579 247 587 1.21e-15 81.3
MS.gene98033.t1 MTR_7g103600 22.877 424 253 12 238 593 137 554 1.38e-15 80.9
MS.gene98033.t1 MTR_1g484840 22.195 410 275 8 180 586 19 387 8.55e-15 78.2
MS.gene98033.t1 MTR_1g080110 23.256 301 225 4 238 538 130 424 9.61e-15 77.8
MS.gene98033.t1 MTR_1g080110 22.969 357 224 11 287 598 73 423 8.95e-14 74.7
MS.gene98033.t1 MTR_1g080110 20.433 416 317 7 125 531 148 558 1.24e-12 71.2
MS.gene98033.t1 MTR_7g405940 24.760 416 284 13 220 626 35 430 3.10e-14 76.6
MS.gene98033.t1 MTR_8g102710 21.066 394 255 9 208 590 59 407 3.30e-14 75.9
MS.gene98033.t1 MTR_1g068960 23.056 360 267 8 242 596 118 472 4.45e-14 76.3
MS.gene98033.t1 MTR_3g105900 22.254 346 252 7 266 604 353 688 5.81e-14 75.9
MS.gene98033.t1 MTR_7g007400 26.582 237 168 4 363 594 144 379 6.39e-14 75.5
MS.gene98033.t1 MTR_6g072030 23.754 341 250 6 258 593 227 562 1.21e-13 74.7
MS.gene98033.t1 MTR_6g072030 20.455 352 264 6 255 594 111 458 1.41e-11 67.8
MS.gene98033.t1 MTR_4g094245 21.311 427 270 12 185 594 35 412 1.37e-13 73.9
MS.gene98033.t1 MTR_7g011500 23.219 379 241 8 164 538 387 719 1.94e-13 73.9
MS.gene98033.t1 MTR_7g044790 22.111 398 255 14 205 591 71 424 5.12e-13 72.8
MS.gene98033.t1 MTR_2g069680 24.609 256 187 4 339 590 79 332 6.84e-13 72.0
MS.gene98033.t1 MTR_2g102210 21.495 428 309 14 181 594 50 464 7.29e-13 72.0
MS.gene98033.t1 MTR_1g045880 22.754 334 214 10 243 538 168 495 1.41e-12 71.2
MS.gene98033.t1 MTR_1g095880 21.162 482 335 16 100 556 224 685 1.86e-12 70.9
MS.gene98033.t1 MTR_3g023180 22.388 335 209 6 259 586 228 518 1.99e-12 70.9
MS.gene98033.t1 MTR_3g037490 24.011 379 224 11 259 582 161 530 2.04e-12 70.5
MS.gene98033.t1 MTR_7g451470 20.787 356 266 8 239 584 332 681 2.42e-12 70.9
MS.gene98033.t1 MTR_6g445320 23.077 364 242 9 235 566 177 534 2.82e-12 70.1
MS.gene98033.t1 MTR_0014s0180 21.037 347 236 9 286 618 161 483 3.61e-12 69.7
MS.gene98033.t1 MTR_5g024320 21.994 341 252 6 259 594 215 546 4.71e-12 69.3
MS.gene98033.t1 MTR_0110s0060 22.857 280 203 6 293 566 267 539 6.12e-12 68.9
MS.gene98033.t1 MTR_5g090210 21.984 514 313 16 148 596 193 683 6.77e-12 68.9
MS.gene98033.t1 MTR_8g107050 20.293 478 337 10 125 577 127 585 7.35e-12 68.9
MS.gene98033.t1 MTR_2g437460 20.761 578 341 18 53 594 54 550 8.50e-12 68.9
MS.gene98033.t1 MTR_8g107050 20.293 478 337 10 125 577 127 585 8.97e-12 68.6
MS.gene98033.t1 MTR_0308s0020 22.941 340 227 13 294 623 55 369 1.65e-11 67.4
MS.gene98033.t1 MTR_0308s0020 21.096 365 277 8 235 594 174 532 2.22e-11 67.0
MS.gene98033.t1 MTR_4g075270 22.152 316 238 6 282 593 454 765 1.73e-11 67.8
MS.gene98033.t1 MTR_7g067460 25.417 240 159 6 367 595 168 398 1.93e-11 67.8
MS.gene98033.t1 MTR_2g049740 22.742 299 222 6 297 590 232 526 2.07e-11 67.8
MS.gene98033.t1 MTR_1g011520 24.661 369 234 14 228 586 110 444 2.13e-11 67.4
MS.gene98033.t1 MTR_6g077800 23.016 252 184 6 345 592 143 388 2.29e-11 67.0
MS.gene98033.t1 MTR_8g071970 22.113 407 269 11 259 620 353 756 2.52e-11 67.4
MS.gene98033.t1 MTR_5g031740 21.429 434 293 11 219 611 220 646 2.92e-11 67.0
MS.gene98033.t1 MTR_4g094688 22.911 371 252 12 258 613 219 570 3.09e-11 67.0
MS.gene98033.t1 MTR_1g031720 22.165 388 259 10 228 585 57 431 3.69e-11 67.0
MS.gene98033.t1 MTR_7g076550 24.206 252 175 7 294 538 72 314 4.03e-11 66.2
MS.gene98033.t1 MTR_6g079380 23.478 345 234 12 276 593 123 464 4.88e-11 65.9
MS.gene98033.t1 MTR_3g091500 22.727 352 221 9 232 566 452 769 4.94e-11 66.2
MS.gene98033.t1 MTR_4g021220 22.878 271 198 7 331 593 71 338 6.28e-11 65.5
MS.gene98033.t1 MTR_6g078160 22.018 327 223 10 294 603 59 370 6.96e-11 65.5
MS.gene98033.t1 MTR_2g035450 22.468 316 226 9 291 594 100 408 9.30e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98033.t1 AT5G15980 45.195 666 323 6 3 628 4 667 0.0 576
MS.gene98033.t1 AT3G02490 46.445 661 318 8 1 627 1 659 0.0 571
MS.gene98033.t1 AT3G48250 31.360 625 407 9 1 611 1 617 6.32e-88 286
MS.gene98033.t1 AT3G06920 22.250 400 299 7 196 590 53 445 7.96e-19 91.7
MS.gene98033.t1 AT3G06920 21.456 522 369 15 92 590 82 585 3.15e-12 70.5
MS.gene98033.t1 AT3G06920 22.250 400 299 7 196 590 53 445 7.96e-19 91.7
MS.gene98033.t1 AT3G06920 21.456 522 369 15 92 590 82 585 3.15e-12 70.5
MS.gene98033.t1 AT1G05670 22.505 471 294 11 125 591 283 686 9.60e-19 90.9
MS.gene98033.t1 AT1G05670 22.505 471 294 11 125 591 283 686 9.60e-19 90.9
MS.gene98033.t1 AT1G05670 22.505 471 294 11 125 591 283 686 9.60e-19 90.9
MS.gene98033.t1 AT1G71060 21.769 441 297 9 195 596 68 499 9.70e-19 90.1
MS.gene98033.t1 AT3G06920 22.250 400 299 7 196 590 39 431 9.70e-19 91.3
MS.gene98033.t1 AT3G06920 21.456 522 369 15 92 590 68 571 4.41e-12 69.7
MS.gene98033.t1 AT5G39710 25.532 329 231 6 258 579 277 598 1.51e-18 90.5
MS.gene98033.t1 AT5G01110 22.727 462 301 10 125 538 300 753 1.96e-18 90.1
MS.gene98033.t1 AT5G01110 21.062 584 391 19 78 596 95 673 3.39e-12 70.1
MS.gene98033.t1 AT5G01110 22.727 462 301 10 125 538 272 725 2.14e-18 89.7
MS.gene98033.t1 AT5G01110 21.062 584 391 19 78 596 67 645 3.32e-12 70.1
MS.gene98033.t1 AT3G48810 22.418 397 257 9 239 594 59 445 4.96e-17 85.5
MS.gene98033.t1 AT2G37230 23.514 387 246 12 196 575 91 434 4.90e-16 82.4
MS.gene98033.t1 AT5G42310 22.199 482 329 14 119 590 193 638 8.24e-16 81.6
MS.gene98033.t1 AT3G53700 23.846 390 258 11 219 587 45 416 1.03e-15 81.3
MS.gene98033.t1 AT3G53700 23.315 356 249 10 252 594 326 670 1.75e-13 74.3
MS.gene98033.t1 AT5G18390 21.696 401 288 9 199 587 57 443 4.99e-15 78.6
MS.gene98033.t1 AT5G43820 23.833 407 262 11 209 574 104 503 8.33e-15 78.2
MS.gene98033.t1 AT5G65560 22.546 377 277 9 227 596 329 697 1.32e-14 78.2
MS.gene98033.t1 AT5G65560 23.645 406 223 10 229 596 96 452 6.68e-14 75.9
MS.gene98033.t1 AT5G65560 22.546 377 277 9 227 596 329 697 1.32e-14 78.2
MS.gene98033.t1 AT5G65560 23.645 406 223 10 229 596 96 452 6.68e-14 75.9
MS.gene98033.t1 AT5G65560 22.546 377 277 9 227 596 329 697 1.32e-14 78.2
MS.gene98033.t1 AT5G65560 23.645 406 223 10 229 596 96 452 6.68e-14 75.9
MS.gene98033.t1 AT5G06400 23.058 412 296 10 196 596 618 1019 1.57e-14 77.8
MS.gene98033.t1 AT5G06400 22.111 398 252 12 209 595 142 492 2.50e-11 67.4
MS.gene98033.t1 AT1G31840 22.743 576 361 19 87 595 67 625 4.97e-14 76.3
MS.gene98033.t1 AT3G07290 27.230 213 150 3 387 595 184 395 5.91e-14 75.9
MS.gene98033.t1 AT1G79540 20.175 342 266 5 259 596 95 433 6.78e-14 75.5
MS.gene98033.t1 AT3G04760 22.324 327 230 10 283 596 83 398 8.24e-14 75.1
MS.gene98033.t1 AT3G04760 22.973 370 262 11 238 594 142 501 4.10e-13 72.8
MS.gene98033.t1 AT5G59900 23.615 343 248 8 259 594 230 565 8.54e-14 75.5
MS.gene98033.t1 AT5G59900 23.546 361 257 9 237 590 419 767 4.16e-11 66.6
MS.gene98033.t1 AT5G64320 23.145 337 204 11 258 584 426 717 1.27e-13 74.7
MS.gene98033.t1 AT5G64320 20.498 522 378 12 96 596 84 589 2.63e-12 70.5
MS.gene98033.t1 AT3G49730 23.529 374 269 10 228 592 103 468 6.52e-13 72.4
MS.gene98033.t1 AT3G16010 21.622 481 311 14 195 628 66 527 7.27e-13 72.0
MS.gene98033.t1 AT4G31850 21.252 607 380 17 85 604 81 676 2.11e-12 70.9
MS.gene98033.t1 AT4G20740 21.698 424 284 10 202 585 106 521 2.26e-12 70.5
MS.gene98033.t1 AT1G06580 23.563 348 249 8 242 581 101 439 2.56e-12 70.1
MS.gene98033.t1 AT3G22470 21.077 427 286 10 169 553 158 575 2.85e-12 70.1
MS.gene98033.t1 AT5G65820 23.138 376 273 9 225 592 116 483 3.59e-12 69.7
MS.gene98033.t1 AT1G62680 21.408 341 257 8 201 536 167 501 3.68e-12 69.7
MS.gene98033.t1 AT1G62680 21.408 341 257 8 201 536 167 501 3.68e-12 69.7
MS.gene98033.t1 AT1G12775 20.455 352 236 7 239 586 107 418 4.38e-12 69.7
MS.gene98033.t1 AT1G77340 23.958 288 212 6 252 538 116 397 6.99e-12 68.2
MS.gene98033.t1 AT5G15010 21.498 414 309 10 208 613 113 518 1.24e-11 68.2
MS.gene98033.t1 AT4G28010 25.532 188 134 4 411 594 225 410 1.37e-11 68.2
MS.gene98033.t1 AT1G80550 22.081 394 268 14 221 593 43 418 1.47e-11 67.4
MS.gene98033.t1 AT1G05600 22.427 379 267 10 236 596 25 394 1.66e-11 67.4
MS.gene98033.t1 AT1G05600 22.427 379 267 10 236 596 25 394 1.66e-11 67.4
MS.gene98033.t1 AT1G05600 22.427 379 267 10 236 596 25 394 1.66e-11 67.4
MS.gene98033.t1 AT1G31840 22.993 548 365 18 87 595 67 596 2.19e-11 67.4
MS.gene98033.t1 AT4G11690 22.924 301 221 6 243 540 229 521 2.76e-11 67.0
MS.gene98033.t1 AT1G06580 23.077 338 244 7 252 581 4 333 2.79e-11 66.2
MS.gene98033.t1 AT1G06580 23.077 338 244 7 252 581 4 333 2.79e-11 66.2
MS.gene98033.t1 AT2G15630 21.607 361 241 10 258 581 262 617 2.82e-11 67.0
MS.gene98033.t1 AT4G11690 22.924 301 221 6 243 540 256 548 3.01e-11 66.6
MS.gene98033.t1 AT1G18900 22.222 450 314 15 199 628 308 741 3.49e-11 67.0
MS.gene98033.t1 AT1G18900 22.222 450 314 15 199 628 308 741 3.49e-11 67.0
MS.gene98033.t1 AT1G18900 22.222 450 314 15 199 628 308 741 3.49e-11 67.0
MS.gene98033.t1 AT1G18900 22.296 453 310 16 199 628 308 741 4.34e-11 66.6
MS.gene98033.t1 AT5G55840 22.222 369 246 10 255 585 192 557 6.84e-11 66.2
MS.gene98033.t1 AT5G55840 22.222 369 246 10 255 585 232 597 7.03e-11 66.2
MS.gene98033.t1 AT5G55840 22.222 369 246 10 255 585 232 597 7.03e-11 66.2
MS.gene98033.t1 AT1G03560 21.384 318 242 5 281 594 317 630 7.29e-11 65.9
MS.gene98033.t1 AT2G17525 21.687 415 271 13 225 596 47 450 8.16e-11 65.5

Find 156 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATACAAGATTCTTTGTAAA+TGG 0.146220 7.3:+80086507 MS.gene98033:CDS
CACAGATGCCTTAAATCTTT+TGG 0.157867 7.3:+80086607 MS.gene98033:CDS
CATCAGACCCAAAAGATTTA+AGG 0.165184 7.3:-80086615 None:intergenic
GAAGAGAAATGACGGAAATT+AGG 0.170623 7.3:-80085180 None:intergenic
ATTAGGGTTTATGAGGAATT+TGG 0.191976 7.3:-80085163 None:intergenic
CTTTGATATGTGTTCGATAA+AGG 0.226243 7.3:-80086669 None:intergenic
GGTTGTTGTTATGAGGAAAA+AGG 0.241522 7.3:+80085479 MS.gene98033:CDS
GGAGAAGGAGATTAGGGATT+TGG 0.248189 7.3:+80085671 MS.gene98033:CDS
AGGATTCGATTGATCGGTTT+TGG 0.265879 7.3:+80085850 MS.gene98033:CDS
ATTAACTTCATTAAGATCTA+TGG 0.272479 7.3:-80085265 None:intergenic
TAGGATTGGGGAGTGGAATA+AGG 0.273285 7.3:+80086175 MS.gene98033:CDS
TTGTAAGAGGCGAATGATTA+AGG 0.277685 7.3:+80085947 MS.gene98033:CDS
TTTAGGTTCGGAGCCGAATA+AGG 0.281881 7.3:+80085737 MS.gene98033:CDS
ATGGAGCTGTTGATGAGTTT+TGG 0.283616 7.3:+80085451 MS.gene98033:CDS
AGCAGCCTCTTTAGTGTTCA+TGG 0.299053 7.3:-80086882 None:intergenic
CTGGGAGTGTTGGGAATTAA+TGG 0.301002 7.3:+80085432 MS.gene98033:CDS
ATGAAGTGGAGAAGGAGATT+AGG 0.301581 7.3:+80085664 MS.gene98033:CDS
TGAAGTGGAGAAGGAGATTA+GGG 0.315712 7.3:+80085665 MS.gene98033:CDS
AAAGAGGCTGCTGCTTCTTC+TGG 0.323696 7.3:+80086893 MS.gene98033:CDS
TAACAAGTGTTGGTAGGATT+GGG 0.329489 7.3:+80086162 MS.gene98033:CDS
GAATGCTTTGACAGATTCTA+TGG 0.331165 7.3:+80086118 MS.gene98033:CDS
TGAATCGGTTAAGTTGGTTT+TGG 0.333930 7.3:+80085710 MS.gene98033:CDS
GTGTGATCGGGATTGGGTTG+TGG 0.335834 7.3:-80085216 None:intergenic
GAGATTAGGGATTTGGATGT+TGG 0.337035 7.3:+80085678 MS.gene98033:CDS
TCGATAAAGGGTTCGGTAAA+AGG 0.342961 7.3:-80086656 None:intergenic
TATGAGGAATTTGGAGTGAT+TGG 0.347665 7.3:-80085154 None:intergenic
AGTGTACCATGTAATGTTTA+AGG 0.352125 7.3:+80086760 MS.gene98033:CDS
AAGAGAAATGACGGAAATTA+GGG 0.352828 7.3:-80085179 None:intergenic
ATTAGCTTGTTCCTTGTTAC+CGG 0.360483 7.3:-80086276 None:intergenic
GGATTGGGTTGTGGGATAAC+TGG 0.367830 7.3:-80085207 None:intergenic
GTGGATAGAATTGAAGCATA+TGG 0.376496 7.3:+80086305 MS.gene98033:CDS
TGTGATCGGGATTGGGTTGT+GGG 0.380700 7.3:-80085215 None:intergenic
TTTGATATGTGTTCGATAAA+GGG 0.381667 7.3:-80086668 None:intergenic
CGGCGCGAAGATTATTCAAA+TGG 0.394432 7.3:+80085358 MS.gene98033:CDS
GCATCGTCACGAATAAAGTT+TGG 0.394534 7.3:-80086836 None:intergenic
GTTGAAGGAGTTGTTTGATA+AGG 0.394750 7.3:+80085581 MS.gene98033:CDS
AACCAGATGCTGGGAGTGTT+GGG 0.394898 7.3:+80085423 MS.gene98033:CDS
TTAACAAGTGTTGGTAGGAT+TGG 0.407364 7.3:+80086161 MS.gene98033:CDS
CTTTATGAGTTTGCTATGGC+TGG 0.411513 7.3:+80085981 MS.gene98033:CDS
TGTCAAAGCATTCCCGTTCC+CGG 0.414639 7.3:-80086108 None:intergenic
GATGACGGTGTGATCGGGAT+TGG 0.415960 7.3:-80085223 None:intergenic
CAAAGAGATGGTTGAGAAAG+AGG 0.418705 7.3:+80086412 MS.gene98033:CDS
TTCCCAACACTCCCAGCATC+TGG 0.420619 7.3:-80085425 None:intergenic
AGATTAGGGATTTGGATGTT+GGG 0.422745 7.3:+80085679 MS.gene98033:CDS
CGGTAAAAGGAGGGAAACCT+TGG 0.426143 7.3:-80086643 None:intergenic
GGAAGGTTGTTGGTGATATG+AGG 0.427153 7.3:+80085871 MS.gene98033:CDS
ATTTGATTCTGATCTTGATT+CGG 0.427441 7.3:+80085338 MS.gene98033:CDS
GGGATTTGGTTGTTGTTATG+AGG 0.428330 7.3:+80085472 MS.gene98033:CDS
GACGGAAATTAGGGTTTATG+AGG 0.429841 7.3:-80085170 None:intergenic
GCGAAGTGTGTGAGATTGAT+TGG 0.430878 7.3:-80085100 None:intergenic
AGTGGATTATTTAAGCATGA+TGG 0.437251 7.3:+80085789 MS.gene98033:CDS
TCAACGATGACGGTGTGATC+GGG 0.439201 7.3:-80085228 None:intergenic
ACATGGTACACTGATGTAGA+TGG 0.442600 7.3:-80086749 None:intergenic
ATACAAGATTCTTTGTAAAT+GGG 0.443889 7.3:+80086508 MS.gene98033:CDS
ATCAACGATGACGGTGTGAT+CGG 0.450394 7.3:-80085229 None:intergenic
TGAAGGAAATGGAAGATTGT+GGG 0.450604 7.3:+80086201 MS.gene98033:CDS
GCATTTCGACTCGGCGCTAC+CGG 0.451956 7.3:+80086257 MS.gene98033:CDS
ATGACGGTGTGATCGGGATT+GGG 0.453250 7.3:-80085222 None:intergenic
AAAGAGATGGTTGAGAAAGA+GGG 0.454837 7.3:+80086413 MS.gene98033:CDS
AGTAACCAAGTTGTTGGCTC+AGG 0.455386 7.3:+80086577 MS.gene98033:CDS
CAGTTGAGAGGAAATTTACT+AGG 0.457044 7.3:+80085607 MS.gene98033:CDS
CTTCGATTCTTTCAAAGAGA+TGG 0.459459 7.3:+80086400 MS.gene98033:CDS
TTATTCCATGAACACTAAAG+AGG 0.464732 7.3:+80086877 MS.gene98033:CDS
TTGAAGGAAATGGAAGATTG+TGG 0.468399 7.3:+80086200 MS.gene98033:CDS
CTTTACCTTTCTGTTGAGAA+AGG 0.468889 7.3:+80086028 MS.gene98033:CDS
CGAAGTGTGTGAGATTGATT+GGG 0.476423 7.3:-80085099 None:intergenic
TTCTTTGAGCAAGGGAGGCA+TGG 0.478807 7.3:+80086785 MS.gene98033:CDS
TTCGAGTGAATCGGTTAAGT+TGG 0.481102 7.3:+80085704 MS.gene98033:CDS
CGGTGGCGAGAGTGCTTGGT+AGG 0.483519 7.3:+80085826 MS.gene98033:CDS
GAGAAAGGTTGTTTCTGCTA+AGG 0.484200 7.3:+80086043 MS.gene98033:CDS
GTTGAGGGGCATTGTGTAGG+TGG 0.485045 7.3:+80086362 MS.gene98033:CDS
TGGATAGAATTGAAGCATAT+GGG 0.488664 7.3:+80086306 MS.gene98033:CDS
TTTAGGTGGGTGGAGGAGAG+TGG 0.489143 7.3:+80085771 MS.gene98033:CDS
ATGCCTCCCTTGCTCAAAGA+AGG 0.493826 7.3:-80086783 None:intergenic
GGGTTGTGGGATAACTGGTT+CGG 0.494568 7.3:-80085202 None:intergenic
TAACCAGATGCTGGGAGTGT+TGG 0.495513 7.3:+80085422 MS.gene98033:CDS
TGTAGATGGAAATTTCTTTG+AGG 0.495725 7.3:-80086735 None:intergenic
GGCTGCTGCTTCTTCTGGTA+TGG 0.495928 7.3:+80086898 MS.gene98033:CDS
CTGAAATCTTTAACAAGTGT+TGG 0.496864 7.3:+80086152 MS.gene98033:CDS
GGAACAAGCTAATGAGTTTG+TGG 0.497718 7.3:+80086286 MS.gene98033:CDS
AATGCGGTGGCGAGAGTGCT+TGG 0.499954 7.3:+80085822 MS.gene98033:CDS
CAACAACAATGAGGAATCAA+TGG 0.500901 7.3:+80085037 None:intergenic
GGATTATTTAAGCATGATGG+AGG 0.502925 7.3:+80085792 MS.gene98033:CDS
AATCTTTAACAAGTGTTGGT+AGG 0.503703 7.3:+80086156 MS.gene98033:CDS
TTGTTGCTAGCGGTGGTTTG+AGG 0.505289 7.3:+80086225 MS.gene98033:CDS
TGGTGGATTTGAGATGGAAG+AGG 0.507469 7.3:+80085896 MS.gene98033:CDS
GGCTGGTGTTGACAAGCCTT+CGG 0.508708 7.3:+80085998 MS.gene98033:CDS
AAGAATCGAAGGCCTTATCA+AGG 0.514605 7.3:-80086388 None:intergenic
GCTGCTAGTAACCAAGTTGT+TGG 0.520368 7.3:+80086571 MS.gene98033:CDS
TTAGTTGAGGGGCATTGTGT+AGG 0.521164 7.3:+80086359 MS.gene98033:CDS
TAGTACAGACCGCAAGATGC+GGG 0.522838 7.3:+80086331 MS.gene98033:CDS
CGAGCTTTATGAGTTTGCTA+TGG 0.523037 7.3:+80085977 MS.gene98033:CDS
TTTAAGGCCTTCTTTGAGCA+AGG 0.524590 7.3:+80086776 MS.gene98033:CDS
GAAATCGTATAACCAGATGC+TGG 0.524922 7.3:+80085413 MS.gene98033:CDS
TATGTGTTCGATAAAGGGTT+CGG 0.526593 7.3:-80086663 None:intergenic
CGTAAAATTGCATTTCGACT+CGG 0.528963 7.3:+80086248 MS.gene98033:CDS
GGCGCGAAGATTATTCAAAT+GGG 0.531438 7.3:+80085359 MS.gene98033:CDS
GAGGAGTGGTGGATTTGAGA+TGG 0.538154 7.3:+80085890 MS.gene98033:CDS
TCCTCCCTGAGCCAACAACT+TGG 0.539355 7.3:-80086582 None:intergenic
GGAAATTTACTAGGCTGTGT+AGG 0.540047 7.3:+80085616 MS.gene98033:CDS
TCGTGACGATGCTGATGTCT+TGG 0.540428 7.3:+80086847 MS.gene98033:CDS
CATCGTGATTGATCAAATCA+AGG 0.542516 7.3:-80085293 None:intergenic
AGAAGGCCTTAAACATTACA+TGG 0.546255 7.3:-80086766 None:intergenic
ATGGGTGAAGGATAGAATGT+TGG 0.550738 7.3:+80085518 MS.gene98033:CDS
TGTAGGTGGGAACCTTGATA+AGG 0.555152 7.3:+80086376 MS.gene98033:CDS
AACAAGTGTTGGTAGGATTG+GGG 0.555476 7.3:+80086163 MS.gene98033:CDS
TGGTGTTGCGAAATGGGTGA+AGG 0.556753 7.3:+80085506 MS.gene98033:CDS
CACATATCAAAGCATGGAAG+TGG 0.557755 7.3:+80086680 MS.gene98033:CDS
CTAGGCTGTGTAGGATTGTG+AGG 0.558491 7.3:+80085625 MS.gene98033:CDS
GTTGGTGATATGAGGAGTGG+TGG 0.561154 7.3:+80085879 MS.gene98033:CDS
CTAAAGATTCCCGCATCTTG+CGG 0.562507 7.3:-80086340 None:intergenic
AAAGAGGGAGTTGCATCTGC+GGG 0.562684 7.3:+80086428 MS.gene98033:CDS
GGCGAGAGTGCTTGGTAGGG+AGG 0.564903 7.3:+80085830 MS.gene98033:CDS
TGATGATGCTGTGAAGTTGA+AGG 0.565044 7.3:+80085566 MS.gene98033:CDS
AAGATTATTCAAATGGGTAT+CGG 0.565173 7.3:+80085365 MS.gene98033:CDS
CATCTCTTTGAAAGAATCGA+AGG 0.566348 7.3:-80086399 None:intergenic
GTGGAGTGATGAAGTGGAGA+AGG 0.567586 7.3:+80085656 MS.gene98033:CDS
TTGGGTCTGATGAGAACCCA+AGG 0.568606 7.3:+80086626 MS.gene98033:CDS
GTAGGGAGGATTCGATTGAT+CGG 0.572855 7.3:+80085844 MS.gene98033:CDS
ATGCGGGAATCTTTAGTTGA+GGG 0.573059 7.3:+80086347 MS.gene98033:CDS
TGCTGCTTCTTCTGGTATGG+TGG 0.573328 7.3:+80086901 MS.gene98033:CDS
TTGAGGGGCATTGTGTAGGT+GGG 0.574625 7.3:+80086363 MS.gene98033:CDS
AGGCCTTCTTTGAGCAAGGG+AGG 0.582491 7.3:+80086780 MS.gene98033:CDS
AAATCGTATAACCAGATGCT+GGG 0.582712 7.3:+80085414 MS.gene98033:CDS
AACAACCTTTCTCAACAGAA+AGG 0.586004 7.3:-80086033 None:intergenic
CTAGTACAGACCGCAAGATG+CGG 0.589855 7.3:+80086330 MS.gene98033:CDS
GATGCGGGAATCTTTAGTTG+AGG 0.591256 7.3:+80086346 MS.gene98033:CDS
TTAAGGCCTTCTTTGAGCAA+GGG 0.592771 7.3:+80086777 MS.gene98033:CDS
CTGGTTCGGAAGAGAAATGA+CGG 0.592985 7.3:-80085188 None:intergenic
GGTAAAAGGAGGGAAACCTT+GGG 0.593350 7.3:-80086642 None:intergenic
TGCGGGAATCTTTAGTTGAG+GGG 0.594591 7.3:+80086348 MS.gene98033:CDS
GTAACCAAGTTGTTGGCTCA+GGG 0.596421 7.3:+80086578 MS.gene98033:CDS
GTGTTGGTAGGATTGGGGAG+TGG 0.596778 7.3:+80086168 MS.gene98033:CDS
GATTGTGGGTTTGTTGCTAG+CGG 0.602191 7.3:+80086215 MS.gene98033:CDS
GGTGTTGAAACGAAGAGGAG+TGG 0.605028 7.3:-80085133 None:intergenic
ACTCGGCGCTACCGGTAACA+AGG 0.605173 7.3:+80086265 MS.gene98033:CDS
TAAAGTTTGGACATTTCGAG+AGG 0.605340 7.3:-80086823 None:intergenic
GGTGGCGAGAGTGCTTGGTA+GGG 0.609624 7.3:+80085827 MS.gene98033:CDS
AAATGTGTGGAGTGATGAAG+TGG 0.611765 7.3:+80085650 MS.gene98033:CDS
AAGGTAAAGCACGACACCGA+AGG 0.617335 7.3:-80086014 None:intergenic
TGAAGCTGTTCTGTTACTCA+AGG 0.619719 7.3:+80086706 MS.gene98033:CDS
ATCGAACACATATCAAAGCA+TGG 0.622024 7.3:+80086674 MS.gene98033:CDS
GAAAGAGGGAGTTGCATCTG+CGG 0.623256 7.3:+80086427 MS.gene98033:CDS
TGTGGGTTTGTTGCTAGCGG+TGG 0.625962 7.3:+80086218 MS.gene98033:CDS
TTGATAAGGATACAGTTGAG+AGG 0.628865 7.3:+80085595 MS.gene98033:CDS
ATAAAGGGTTCGGTAAAAGG+AGG 0.631286 7.3:-80086653 None:intergenic
TGATTGGTGTTGAAACGAAG+AGG 0.632175 7.3:-80085138 None:intergenic
CGAGAATAAATCAACGATGA+CGG 0.632836 7.3:-80085238 None:intergenic
TAAAGGGTTCGGTAAAAGGA+GGG 0.647534 7.3:-80086652 None:intergenic
GATTATTTAAGCATGATGGA+GGG 0.649554 7.3:+80085793 MS.gene98033:CDS
TGGAGGGAGTTACAATGCGG+TGG 0.659732 7.3:+80085809 MS.gene98033:CDS
ACCAAGTTGTTGGCTCAGGG+AGG 0.661243 7.3:+80086581 MS.gene98033:CDS
GTTGTTGGTGATATGAGGAG+TGG 0.695892 7.3:+80085876 MS.gene98033:CDS
GAAGTGTGTGAGATTGATTG+GGG 0.696725 7.3:-80085098 None:intergenic
AGCTTGTAAGTAGAATGTCG+AGG 0.733278 7.3:-80086551 None:intergenic
TGATGGAGGGAGTTACAATG+CGG 0.775145 7.3:+80085806 MS.gene98033:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATACAAGATTCTTTGTAAAT+GGG + chr7.3:80086508-80086527 MS.gene98033:CDS 20.0%
!! ATTAACTTCATTAAGATCTA+TGG - chr7.3:80085268-80085287 None:intergenic 20.0%
! AAGATTATTCAAATGGGTAT+CGG + chr7.3:80085365-80085384 MS.gene98033:CDS 25.0%
! ATTTGATTCTGATCTTGATT+CGG + chr7.3:80085338-80085357 MS.gene98033:CDS 25.0%
! CATACAAGATTCTTTGTAAA+TGG + chr7.3:80086507-80086526 MS.gene98033:CDS 25.0%
! TTTGATATGTGTTCGATAAA+GGG - chr7.3:80086671-80086690 None:intergenic 25.0%
!! AAAAATATCAACGCCTTATT+CGG - chr7.3:80085753-80085772 None:intergenic 25.0%
!!! AGATATGAATTTGTTTTCGA+GGG + chr7.3:80086070-80086089 MS.gene98033:CDS 25.0%
!!! ATAAGGCGTTGATATTTTTT+AGG + chr7.3:80085754-80085773 MS.gene98033:CDS 25.0%
!!! ATGTTGGAGTATTTTGAAAA+AGG + chr7.3:80085534-80085553 MS.gene98033:CDS 25.0%
!!! TAGATATGAATTTGTTTTCG+AGG + chr7.3:80086069-80086088 MS.gene98033:CDS 25.0%
!!! TGTTGGAGTATTTTGAAAAA+GGG + chr7.3:80085535-80085554 MS.gene98033:CDS 25.0%
AGTGTACCATGTAATGTTTA+AGG + chr7.3:80086760-80086779 MS.gene98033:CDS 30.0%
ATTAGGGTTTATGAGGAATT+TGG - chr7.3:80085166-80085185 None:intergenic 30.0%
CTGAAATCTTTAACAAGTGT+TGG + chr7.3:80086152-80086171 MS.gene98033:CDS 30.0%
CTTTGATATGTGTTCGATAA+AGG - chr7.3:80086672-80086691 None:intergenic 30.0%
TGGATAGAATTGAAGCATAT+GGG + chr7.3:80086306-80086325 MS.gene98033:CDS 30.0%
TGTAGATGGAAATTTCTTTG+AGG - chr7.3:80086738-80086757 None:intergenic 30.0%
TTATTCCATGAACACTAAAG+AGG + chr7.3:80086877-80086896 MS.gene98033:CDS 30.0%
! AAGAGAAATGACGGAAATTA+GGG - chr7.3:80085182-80085201 None:intergenic 30.0%
! ACAGATGCCTTAAATCTTTT+GGG + chr7.3:80086608-80086627 MS.gene98033:CDS 30.0%
! CATCTTTTGCTCTATTCATT+TGG - chr7.3:80086487-80086506 None:intergenic 30.0%
! GAGACTTTTGTTAAGGTTTT+GGG + chr7.3:80085918-80085937 MS.gene98033:CDS 30.0%
! GATTATTTAAGCATGATGGA+GGG + chr7.3:80085793-80085812 MS.gene98033:CDS 30.0%
! GTTGTTGTTATGAGGAAAAA+GGG + chr7.3:80085480-80085499 MS.gene98033:CDS 30.0%
!! AATCTTTAACAAGTGTTGGT+AGG + chr7.3:80086156-80086175 MS.gene98033:CDS 30.0%
!! AGTGGATTATTTAAGCATGA+TGG + chr7.3:80085789-80085808 MS.gene98033:CDS 30.0%
!! GTTGGAGTATTTTGAAAAAG+GGG + chr7.3:80085536-80085555 MS.gene98033:CDS 30.0%
!! TTGGAGTATTTTGAAAAAGG+GGG + chr7.3:80085537-80085556 MS.gene98033:CDS 30.0%
!!! GAATAAGGTTTTGAAGGAAA+TGG + chr7.3:80086190-80086209 MS.gene98033:CDS 30.0%
AAAGAGATGGTTGAGAAAGA+GGG + chr7.3:80086413-80086432 MS.gene98033:CDS 35.0%
AAATCGTATAACCAGATGCT+GGG + chr7.3:80085414-80085433 MS.gene98033:CDS 35.0%
AACAACCTTTCTCAACAGAA+AGG - chr7.3:80086036-80086055 None:intergenic 35.0%
AGAAGGCCTTAAACATTACA+TGG - chr7.3:80086769-80086788 None:intergenic 35.0%
AGATTAGGGATTTGGATGTT+GGG + chr7.3:80085679-80085698 MS.gene98033:CDS 35.0%
ATCGAACACATATCAAAGCA+TGG + chr7.3:80086674-80086693 MS.gene98033:CDS 35.0%
CAGTTGAGAGGAAATTTACT+AGG + chr7.3:80085607-80085626 MS.gene98033:CDS 35.0%
CATCAGACCCAAAAGATTTA+AGG - chr7.3:80086618-80086637 None:intergenic 35.0%
CATCGTGATTGATCAAATCA+AGG - chr7.3:80085296-80085315 None:intergenic 35.0%
CGAGAATAAATCAACGATGA+CGG - chr7.3:80085241-80085260 None:intergenic 35.0%
CGTAAAATTGCATTTCGACT+CGG + chr7.3:80086248-80086267 MS.gene98033:CDS 35.0%
CTTCGATTCTTTCAAAGAGA+TGG + chr7.3:80086400-80086419 MS.gene98033:CDS 35.0%
CTTTACCTTTCTGTTGAGAA+AGG + chr7.3:80086028-80086047 MS.gene98033:CDS 35.0%
GAATGCTTTGACAGATTCTA+TGG + chr7.3:80086118-80086137 MS.gene98033:CDS 35.0%
GGATTATTTAAGCATGATGG+AGG + chr7.3:80085792-80085811 MS.gene98033:CDS 35.0%
GTGGATAGAATTGAAGCATA+TGG + chr7.3:80086305-80086324 MS.gene98033:CDS 35.0%
GTTGAAGGAGTTGTTTGATA+AGG + chr7.3:80085581-80085600 MS.gene98033:CDS 35.0%
TAAAGTTTGGACATTTCGAG+AGG - chr7.3:80086826-80086845 None:intergenic 35.0%
TATGTGTTCGATAAAGGGTT+CGG - chr7.3:80086666-80086685 None:intergenic 35.0%
TGAAGGAAATGGAAGATTGT+GGG + chr7.3:80086201-80086220 MS.gene98033:CDS 35.0%
TTGAAGGAAATGGAAGATTG+TGG + chr7.3:80086200-80086219 MS.gene98033:CDS 35.0%
TTGATAAGGATACAGTTGAG+AGG + chr7.3:80085595-80085614 MS.gene98033:CDS 35.0%
TTGTAAGAGGCGAATGATTA+AGG + chr7.3:80085947-80085966 MS.gene98033:CDS 35.0%
! CACAGATGCCTTAAATCTTT+TGG + chr7.3:80086607-80086626 MS.gene98033:CDS 35.0%
! CATCTCTTTGAAAGAATCGA+AGG - chr7.3:80086402-80086421 None:intergenic 35.0%
! CGATTTCGAACTCAACTTTT+CGG - chr7.3:80085400-80085419 None:intergenic 35.0%
! GAAGAGAAATGACGGAAATT+AGG - chr7.3:80085183-80085202 None:intergenic 35.0%
! GATTTCGAACTCAACTTTTC+GGG - chr7.3:80085399-80085418 None:intergenic 35.0%
! GGAGACTTTTGTTAAGGTTT+TGG + chr7.3:80085917-80085936 MS.gene98033:CDS 35.0%
! GGTTGTTGTTATGAGGAAAA+AGG + chr7.3:80085479-80085498 MS.gene98033:CDS 35.0%
! GTTATGAGGAAAAAGGGTTT+TGG + chr7.3:80085486-80085505 MS.gene98033:CDS 35.0%
! TATGAGGAATTTGGAGTGAT+TGG - chr7.3:80085157-80085176 None:intergenic 35.0%
!! ATTAGCTTGTTCCTTGTTAC+CGG - chr7.3:80086279-80086298 None:intergenic 35.0%
!! TAACAAGTGTTGGTAGGATT+GGG + chr7.3:80086162-80086181 MS.gene98033:CDS 35.0%
!! TTAACAAGTGTTGGTAGGAT+TGG + chr7.3:80086161-80086180 MS.gene98033:CDS 35.0%
!!! AAGTTGGTTTTGGAGAGTTT+AGG + chr7.3:80085720-80085739 MS.gene98033:CDS 35.0%
!!! AGGCGTTGATATTTTTTAGG+TGG + chr7.3:80085757-80085776 MS.gene98033:CDS 35.0%
!!! CTTTTGTTAAGGTTTTGGGA+CGG + chr7.3:80085922-80085941 MS.gene98033:CDS 35.0%
!!! GGCGTTGATATTTTTTAGGT+GGG + chr7.3:80085758-80085777 MS.gene98033:CDS 35.0%
!!! GTTGATATTTTTTAGGTGGG+TGG + chr7.3:80085761-80085780 MS.gene98033:CDS 35.0%
!!! TGAATCGGTTAAGTTGGTTT+TGG + chr7.3:80085710-80085729 MS.gene98033:CDS 35.0%
!!! TGTTGATGAGTTTTGGGATT+TGG + chr7.3:80085458-80085477 MS.gene98033:CDS 35.0%
AAATGTGTGGAGTGATGAAG+TGG + chr7.3:80085650-80085669 MS.gene98033:CDS 40.0%
ACATGGTACACTGATGTAGA+TGG - chr7.3:80086752-80086771 None:intergenic 40.0%
AGCTTGTAAGTAGAATGTCG+AGG - chr7.3:80086554-80086573 None:intergenic 40.0%
ATGAAGTGGAGAAGGAGATT+AGG + chr7.3:80085664-80085683 MS.gene98033:CDS 40.0%
ATGCGGGAATCTTTAGTTGA+GGG + chr7.3:80086347-80086366 MS.gene98033:CDS 40.0%
ATGGGTGAAGGATAGAATGT+TGG + chr7.3:80085518-80085537 MS.gene98033:CDS 40.0%
CAAAGAGATGGTTGAGAAAG+AGG + chr7.3:80086412-80086431 MS.gene98033:CDS 40.0%
CACATATCAAAGCATGGAAG+TGG + chr7.3:80086680-80086699 MS.gene98033:CDS 40.0%
CGAAGTGTGTGAGATTGATT+GGG - chr7.3:80085102-80085121 None:intergenic 40.0%
GAAATCGTATAACCAGATGC+TGG + chr7.3:80085413-80085432 MS.gene98033:CDS 40.0%
GAAGTGTGTGAGATTGATTG+GGG - chr7.3:80085101-80085120 None:intergenic 40.0%
GACGGAAATTAGGGTTTATG+AGG - chr7.3:80085173-80085192 None:intergenic 40.0%
GAGATTAGGGATTTGGATGT+TGG + chr7.3:80085678-80085697 MS.gene98033:CDS 40.0%
GCATCGTCACGAATAAAGTT+TGG - chr7.3:80086839-80086858 None:intergenic 40.0%
GGAAATTTACTAGGCTGTGT+AGG + chr7.3:80085616-80085635 MS.gene98033:CDS 40.0%
GGAACAAGCTAATGAGTTTG+TGG + chr7.3:80086286-80086305 MS.gene98033:CDS 40.0%
GGATTGTGAGGAAAAATGTG+TGG + chr7.3:80085637-80085656 MS.gene98033:CDS 40.0%
GGCGCGAAGATTATTCAAAT+GGG + chr7.3:80085359-80085378 MS.gene98033:CDS 40.0%
TGAAGCTGTTCTGTTACTCA+AGG + chr7.3:80086706-80086725 MS.gene98033:CDS 40.0%
TGAAGTGGAGAAGGAGATTA+GGG + chr7.3:80085665-80085684 MS.gene98033:CDS 40.0%
TTAAGGCCTTCTTTGAGCAA+GGG + chr7.3:80086777-80086796 MS.gene98033:CDS 40.0%
TTCGAGTGAATCGGTTAAGT+TGG + chr7.3:80085704-80085723 MS.gene98033:CDS 40.0%
! AAGAATCGAAGGCCTTATCA+AGG - chr7.3:80086391-80086410 None:intergenic 40.0%
! ATAAAGGGTTCGGTAAAAGG+AGG - chr7.3:80086656-80086675 None:intergenic 40.0%
! GAGATTGATTGGGGATTTTG+TGG - chr7.3:80085092-80085111 None:intergenic 40.0%
! GGAAGAGGAGACTTTTGTTA+AGG + chr7.3:80085911-80085930 MS.gene98033:CDS 40.0%
! GGGATTTGGTTGTTGTTATG+AGG + chr7.3:80085472-80085491 MS.gene98033:CDS 40.0%
! TAAAGGGTTCGGTAAAAGGA+GGG - chr7.3:80086655-80086674 None:intergenic 40.0%
! TCGATAAAGGGTTCGGTAAA+AGG - chr7.3:80086659-80086678 None:intergenic 40.0%
! TGATGATGCTGTGAAGTTGA+AGG + chr7.3:80085566-80085585 MS.gene98033:CDS 40.0%
! TTGAAGGTTTTTACCGGGAA+CGG + chr7.3:80086095-80086114 MS.gene98033:CDS 40.0%
! TTTAAGGCCTTCTTTGAGCA+AGG + chr7.3:80086776-80086795 MS.gene98033:CDS 40.0%
!! AACAAGTGTTGGTAGGATTG+GGG + chr7.3:80086163-80086182 MS.gene98033:CDS 40.0%
!! AGGATTCGATTGATCGGTTT+TGG + chr7.3:80085850-80085869 MS.gene98033:CDS 40.0%
!! ATGCTGTTAACGCTGTTTTG+AGG + chr7.3:80085313-80085332 MS.gene98033:CDS 40.0%
!! ATGGAGCTGTTGATGAGTTT+TGG + chr7.3:80085451-80085470 MS.gene98033:CDS 40.0%
!! CGAGCTTTATGAGTTTGCTA+TGG + chr7.3:80085977-80085996 MS.gene98033:CDS 40.0%
!! CTTTATGAGTTTGCTATGGC+TGG + chr7.3:80085981-80086000 MS.gene98033:CDS 40.0%
!! GAGAAAGGTTGTTTCTGCTA+AGG + chr7.3:80086043-80086062 MS.gene98033:CDS 40.0%
!! GGAGTGGAATAAGGTTTTGA+AGG + chr7.3:80086184-80086203 MS.gene98033:CDS 40.0%
!! TGATTGGTGTTGAAACGAAG+AGG - chr7.3:80085141-80085160 None:intergenic 40.0%
!! TGGAGCTGTTGATGAGTTTT+GGG + chr7.3:80085452-80085471 MS.gene98033:CDS 40.0%
!!! AGGGTGTTGAAGGTTTTTAC+CGG + chr7.3:80086089-80086108 MS.gene98033:CDS 40.0%
!!! GATATTTTTTAGGTGGGTGG+AGG + chr7.3:80085764-80085783 MS.gene98033:CDS 40.0%
!!! GGTTTTGGAGAGTTTAGGTT+CGG + chr7.3:80085725-80085744 MS.gene98033:CDS 40.0%
!!! TGTTGGGTTTTCGAGTGAAT+CGG + chr7.3:80085695-80085714 MS.gene98033:CDS 40.0%
!!! TTCGATTGATCGGTTTTGGA+AGG + chr7.3:80085854-80085873 MS.gene98033:CDS 40.0%
!!! TTTGTTTTCGAGGGTGTTGA+AGG + chr7.3:80086079-80086098 MS.gene98033:CDS 40.0%
!!! TTTTGGGACGGTTTTGTAAG+AGG + chr7.3:80085934-80085953 MS.gene98033:CDS 40.0%
AGCAGCCTCTTTAGTGTTCA+TGG - chr7.3:80086885-80086904 None:intergenic 45.0%
CGGCGCGAAGATTATTCAAA+TGG + chr7.3:80085358-80085377 MS.gene98033:CDS 45.0%
CTAAAGATTCCCGCATCTTG+CGG - chr7.3:80086343-80086362 None:intergenic 45.0%
GATGCGGGAATCTTTAGTTG+AGG + chr7.3:80086346-80086365 MS.gene98033:CDS 45.0%
GCGAAGTGTGTGAGATTGAT+TGG - chr7.3:80085103-80085122 None:intergenic 45.0%
GCTGCTAGTAACCAAGTTGT+TGG + chr7.3:80086571-80086590 MS.gene98033:CDS 45.0%
GGAGAAGGAGATTAGGGATT+TGG + chr7.3:80085671-80085690 MS.gene98033:CDS 45.0%
GGTAAAAGGAGGGAAACCTT+GGG - chr7.3:80086645-80086664 None:intergenic 45.0%
GTAGGGAGGATTCGATTGAT+CGG + chr7.3:80085844-80085863 MS.gene98033:CDS 45.0%
TAGGATTGGGGAGTGGAATA+AGG + chr7.3:80086175-80086194 MS.gene98033:CDS 45.0%
TGATGGAGGGAGTTACAATG+CGG + chr7.3:80085806-80085825 MS.gene98033:CDS 45.0%
TGCGGGAATCTTTAGTTGAG+GGG + chr7.3:80086348-80086367 MS.gene98033:CDS 45.0%
TGTAGGTGGGAACCTTGATA+AGG + chr7.3:80086376-80086395 MS.gene98033:CDS 45.0%
! ATCAACGATGACGGTGTGAT+CGG - chr7.3:80085232-80085251 None:intergenic 45.0%
! TGAAGGTTTTTACCGGGAAC+GGG + chr7.3:80086096-80086115 MS.gene98033:CDS 45.0%
! TTTAGGTTCGGAGCCGAATA+AGG + chr7.3:80085737-80085756 MS.gene98033:CDS 45.0%
!! AGTAACCAAGTTGTTGGCTC+AGG + chr7.3:80086577-80086596 MS.gene98033:CDS 45.0%
!! CTGGGAGTGTTGGGAATTAA+TGG + chr7.3:80085432-80085451 MS.gene98033:CDS 45.0%
!! CTGGTTCGGAAGAGAAATGA+CGG - chr7.3:80085191-80085210 None:intergenic 45.0%
!! GATTGTGGGTTTGTTGCTAG+CGG + chr7.3:80086215-80086234 MS.gene98033:CDS 45.0%
!! GGAAGGTTGTTGGTGATATG+AGG + chr7.3:80085871-80085890 MS.gene98033:CDS 45.0%
!! GTAACCAAGTTGTTGGCTCA+GGG + chr7.3:80086578-80086597 MS.gene98033:CDS 45.0%
!! GTTGTTGGTGATATGAGGAG+TGG + chr7.3:80085876-80085895 MS.gene98033:CDS 45.0%
!! TGGTGGATTTGAGATGGAAG+AGG + chr7.3:80085896-80085915 MS.gene98033:CDS 45.0%
!! TTAGTTGAGGGGCATTGTGT+AGG + chr7.3:80086359-80086378 MS.gene98033:CDS 45.0%
!!! AGGGTTTTGGTGTTGCGAAA+TGG + chr7.3:80085499-80085518 MS.gene98033:CDS 45.0%
!!! GATCGGTTTTGGAAGGTTGT+TGG + chr7.3:80085861-80085880 MS.gene98033:CDS 45.0%
!!! GGGTGTTGAAGGTTTTTACC+GGG + chr7.3:80086090-80086109 MS.gene98033:CDS 45.0%
!!! GGGTTTTGGTGTTGCGAAAT+GGG + chr7.3:80085500-80085519 MS.gene98033:CDS 45.0%
AAAGAGGGAGTTGCATCTGC+GGG + chr7.3:80086428-80086447 MS.gene98033:CDS 50.0%
AAGGTAAAGCACGACACCGA+AGG - chr7.3:80086017-80086036 None:intergenic 50.0%
ATGACGGTGTGATCGGGATT+GGG - chr7.3:80085225-80085244 None:intergenic 50.0%
ATGCCTCCCTTGCTCAAAGA+AGG - chr7.3:80086786-80086805 None:intergenic 50.0%
CGGTAAAAGGAGGGAAACCT+TGG - chr7.3:80086646-80086665 None:intergenic 50.0%
CTAGGCTGTGTAGGATTGTG+AGG + chr7.3:80085625-80085644 MS.gene98033:CDS 50.0%
CTAGTACAGACCGCAAGATG+CGG + chr7.3:80086330-80086349 MS.gene98033:CDS 50.0%
GAAAGAGGGAGTTGCATCTG+CGG + chr7.3:80086427-80086446 MS.gene98033:CDS 50.0%
GGGTTGTGGGATAACTGGTT+CGG - chr7.3:80085205-80085224 None:intergenic 50.0%
GTGGAGTGATGAAGTGGAGA+AGG + chr7.3:80085656-80085675 MS.gene98033:CDS 50.0%
TAGTACAGACCGCAAGATGC+GGG + chr7.3:80086331-80086350 MS.gene98033:CDS 50.0%
TCGTGACGATGCTGATGTCT+TGG + chr7.3:80086847-80086866 MS.gene98033:CDS 50.0%
TTCTTTGAGCAAGGGAGGCA+TGG + chr7.3:80086785-80086804 MS.gene98033:CDS 50.0%
TTGGGTCTGATGAGAACCCA+AGG + chr7.3:80086626-80086645 MS.gene98033:CDS 50.0%
TTGTTGCTAGCGGTGGTTTG+AGG + chr7.3:80086225-80086244 MS.gene98033:CDS 50.0%
! AAAGAGGCTGCTGCTTCTTC+TGG + chr7.3:80086893-80086912 MS.gene98033:CDS 50.0%
! GGATTGGGTTGTGGGATAAC+TGG - chr7.3:80085210-80085229 None:intergenic 50.0%
! GGTGTTGAAACGAAGAGGAG+TGG - chr7.3:80085136-80085155 None:intergenic 50.0%
! TAACCAGATGCTGGGAGTGT+TGG + chr7.3:80085422-80085441 MS.gene98033:CDS 50.0%
! TCAACGATGACGGTGTGATC+GGG - chr7.3:80085231-80085250 None:intergenic 50.0%
! TGCTGCTTCTTCTGGTATGG+TGG + chr7.3:80086901-80086920 MS.gene98033:CDS 50.0%
! TGTCAAAGCATTCCCGTTCC+CGG - chr7.3:80086111-80086130 None:intergenic 50.0%
! TGTGATCGGGATTGGGTTGT+GGG - chr7.3:80085218-80085237 None:intergenic 50.0%
!! AACCAGATGCTGGGAGTGTT+GGG + chr7.3:80085423-80085442 MS.gene98033:CDS 50.0%
!! GAGGAGTGGTGGATTTGAGA+TGG + chr7.3:80085890-80085909 MS.gene98033:CDS 50.0%
!! GTTGGTGATATGAGGAGTGG+TGG + chr7.3:80085879-80085898 MS.gene98033:CDS 50.0%
!! TGGTGTTGCGAAATGGGTGA+AGG + chr7.3:80085506-80085525 MS.gene98033:CDS 50.0%
!! TTGAGGGGCATTGTGTAGGT+GGG + chr7.3:80086363-80086382 MS.gene98033:CDS 50.0%
AGGCCTTCTTTGAGCAAGGG+AGG + chr7.3:80086780-80086799 MS.gene98033:CDS 55.0%
TCCTCCCTGAGCCAACAACT+TGG - chr7.3:80086585-80086604 None:intergenic 55.0%
TGGAGGGAGTTACAATGCGG+TGG + chr7.3:80085809-80085828 MS.gene98033:CDS 55.0%
TTCCCAACACTCCCAGCATC+TGG - chr7.3:80085428-80085447 None:intergenic 55.0%
TTTAGGTGGGTGGAGGAGAG+TGG + chr7.3:80085771-80085790 MS.gene98033:CDS 55.0%
! GATGACGGTGTGATCGGGAT+TGG - chr7.3:80085226-80085245 None:intergenic 55.0%
! GGCTGCTGCTTCTTCTGGTA+TGG + chr7.3:80086898-80086917 MS.gene98033:CDS 55.0%
! GTGTGATCGGGATTGGGTTG+TGG - chr7.3:80085219-80085238 None:intergenic 55.0%
! GTGTTGGTAGGATTGGGGAG+TGG + chr7.3:80086168-80086187 MS.gene98033:CDS 55.0%
!! ACCAAGTTGTTGGCTCAGGG+AGG + chr7.3:80086581-80086600 MS.gene98033:CDS 55.0%
!! GGCTGGTGTTGACAAGCCTT+CGG + chr7.3:80085998-80086017 MS.gene98033:CDS 55.0%
!! GTTGAGGGGCATTGTGTAGG+TGG + chr7.3:80086362-80086381 MS.gene98033:CDS 55.0%
!! TGTGGGTTTGTTGCTAGCGG+TGG + chr7.3:80086218-80086237 MS.gene98033:CDS 55.0%
ACTCGGCGCTACCGGTAACA+AGG + chr7.3:80086265-80086284 MS.gene98033:CDS 60.0%
!! AATGCGGTGGCGAGAGTGCT+TGG + chr7.3:80085822-80085841 MS.gene98033:CDS 60.0%
!! GCATTTCGACTCGGCGCTAC+CGG + chr7.3:80086257-80086276 MS.gene98033:CDS 60.0%
!! GGTGGCGAGAGTGCTTGGTA+GGG + chr7.3:80085827-80085846 MS.gene98033:CDS 60.0%
!! CGGTGGCGAGAGTGCTTGGT+AGG + chr7.3:80085826-80085845 MS.gene98033:CDS 65.0%
!! GGCGAGAGTGCTTGGTAGGG+AGG + chr7.3:80085830-80085849 MS.gene98033:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 80085045 80086931 80085045 ID=MS.gene98033
chr7.3 mRNA 80085045 80086931 80085045 ID=MS.gene98033.t1;Parent=MS.gene98033
chr7.3 exon 80085045 80086931 80085045 ID=MS.gene98033.t1.exon1;Parent=MS.gene98033.t1
chr7.3 CDS 80085045 80086931 80085045 ID=cds.MS.gene98033.t1;Parent=MS.gene98033.t1
Gene Sequence

>MS.gene98033

ATGAGGAATCAATGGCGCATTCTTCATCTTCTTCTTCGCACTCACCACAAAATCCCCAATCAATCTCACACACTTCGCTCTTTCTCTTCCACTCCTCTTCGTTTCAACACCAATCACTCCAAATTCCTCATAAACCCTAATTTCCGTCATTTCTCTTCCGAACCAGTTATCCCACAACCCAATCCCGATCACACCGTCATCGTTGATTTATTCTCGAAATCCATAGATCTTAATGAAGTTAATAAACACCTTGATTTGATCAATCACGATGCTGTTAACGCTGTTTTGAGGAAATTTGATTCTGATCTTGATTCGGCGCGAAGATTATTCAAATGGGTATCGGAGAATTGTCCCGAAAAGTTGAGTTCGAAATCGTATAACCAGATGCTGGGAGTGTTGGGAATTAATGGAGCTGTTGATGAGTTTTGGGATTTGGTTGTTGTTATGAGGAAAAAGGGTTTTGGTGTTGCGAAATGGGTGAAGGATAGAATGTTGGAGTATTTTGAAAAAGGGGGAATGAATGATGATGCTGTGAAGTTGAAGGAGTTGTTTGATAAGGATACAGTTGAGAGGAAATTTACTAGGCTGTGTAGGATTGTGAGGAAAAATGTGTGGAGTGATGAAGTGGAGAAGGAGATTAGGGATTTGGATGTTGGGTTTTCGAGTGAATCGGTTAAGTTGGTTTTGGAGAGTTTAGGTTCGGAGCCGAATAAGGCGTTGATATTTTTTAGGTGGGTGGAGGAGAGTGGATTATTTAAGCATGATGGAGGGAGTTACAATGCGGTGGCGAGAGTGCTTGGTAGGGAGGATTCGATTGATCGGTTTTGGAAGGTTGTTGGTGATATGAGGAGTGGTGGATTTGAGATGGAAGAGGAGACTTTTGTTAAGGTTTTGGGACGGTTTTGTAAGAGGCGAATGATTAAGGAAGCTGTCGAGCTTTATGAGTTTGCTATGGCTGGTGTTGACAAGCCTTCGGTGTCGTGCTTTACCTTTCTGTTGAGAAAGGTTGTTTCTGCTAAGGAGTTAGATATGAATTTGTTTTCGAGGGTGTTGAAGGTTTTTACCGGGAACGGGAATGCTTTGACAGATTCTATGGCTGATGCTGTACTGAAATCTTTAACAAGTGTTGGTAGGATTGGGGAGTGGAATAAGGTTTTGAAGGAAATGGAAGATTGTGGGTTTGTTGCTAGCGGTGGTTTGAGGCGTAAAATTGCATTTCGACTCGGCGCTACCGGTAACAAGGAACAAGCTAATGAGTTTGTGGATAGAATTGAAGCATATGGGTCTAGTACAGACCGCAAGATGCGGGAATCTTTAGTTGAGGGGCATTGTGTAGGTGGGAACCTTGATAAGGCCTTCGATTCTTTCAAAGAGATGGTTGAGAAAGAGGGAGTTGCATCTGCGGGCTATACTTTTGATGTGTTGATGAATTCATATTGCCAAATGAATAGAGCAAAAGATGCATACAAGATTCTTTGTAAATGGGTGAATGAAAAAGAGTTAAAGCCTCGACATTCTACTTACAAGCTGCTAGTAACCAAGTTGTTGGCTCAGGGAGGATTCACAGATGCCTTAAATCTTTTGGGTCTGATGAGAACCCAAGGTTTCCCTCCTTTTACCGAACCCTTTATCGAACACATATCAAAGCATGGAAGTGGTGATGAAGCTGTTCTGTTACTCAAGGCAATGACCTCAAAGAAATTTCCATCTACATCAGTGTACCATGTAATGTTTAAGGCCTTCTTTGAGCAAGGGAGGCATGGAGAAGCACAAAATTTCCTCTCGAAATGTCCAAACTTTATTCGTGACGATGCTGATGTCTTGGATCTCTTTTATTCCATGAACACTAAAGAGGCTGCTGCTTCTTCTGGTATGGTGGCTGCTTAA
Protein sequence

>MS.gene98033.t1

MRNQWRILHLLLRTHHKIPNQSHTLRSFSSTPLRFNTNHSKFLINPNFRHFSSEPVIPQPNPDHTVIVDLFSKSIDLNEVNKHLDLINHDAVNAVLRKFDSDLDSARRLFKWVSENCPEKLSSKSYNQMLGVLGINGAVDEFWDLVVVMRKKGFGVAKWVKDRMLEYFEKGGMNDDAVKLKELFDKDTVERKFTRLCRIVRKNVWSDEVEKEIRDLDVGFSSESVKLVLESLGSEPNKALIFFRWVEESGLFKHDGGSYNAVARVLGREDSIDRFWKVVGDMRSGGFEMEEETFVKVLGRFCKRRMIKEAVELYEFAMAGVDKPSVSCFTFLLRKVVSAKELDMNLFSRVLKVFTGNGNALTDSMADAVLKSLTSVGRIGEWNKVLKEMEDCGFVASGGLRRKIAFRLGATGNKEQANEFVDRIEAYGSSTDRKMRESLVEGHCVGGNLDKAFDSFKEMVEKEGVASAGYTFDVLMNSYCQMNRAKDAYKILCKWVNEKELKPRHSTYKLLVTKLLAQGGFTDALNLLGLMRTQGFPPFTEPFIEHISKHGSGDEAVLLLKAMTSKKFPSTSVYHVMFKAFFEQGRHGEAQNFLSKCPNFIRDDADVLDLFYSMNTKEAAASSGMVAA