AlfalfaGEDB | MS.gene011334

M. sativa cultivar XinJiangDaYe / MS.gene011334

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF01535.23 PF13041.9 PF14559.9 PF17177.7

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene011334.t1	XP_013457738.1	92.9	637	43	1	1	635	1	637	2.90E-259	904.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene011334.t1	Q9STK5	49.0	402	182	5	1	392	1	389	1.4e-100	368.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene011334.t1	A0A072UPK5	92.9	637	43	1	1	635	1	637	2.1e-259	904.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene011334	MS.gene73119	PPI
MS.gene011334	MS.gene44784	PPI
MS.gene011334	MS.gene98033	PPI
MS.gene011334	MS.gene022051	PPI
MS.gene011334	MS.gene064542	PPI
MS.gene011334	MS.gene035805	PPI
MS.gene011334	MS.gene62917	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene011334.t1	MTR_4g104800	93.093	637	42	1	1	635	1	637	0.0	1178
MS.gene011334.t1	MTR_4g104830	82.969	640	102	3	1	635	1	638	0.0	1067
MS.gene011334.t1	MTR_4g104790	53.312	634	284	5	1	628	1	628	0.0	684
MS.gene011334.t1	MTR_5g092040	51.189	631	159	19	1	612	1	501	0.0	523
MS.gene011334.t1	MTR_0252s0060	56.391	399	106	6	222	570	35	415	1.62e-133	400
MS.gene011334.t1	MTR_0252s0060	33.913	460	204	15	4	436	1	387	2.80e-51	184
MS.gene011334.t1	MTR_4g104860	82.547	212	37	0	239	450	1	212	3.74e-126	372
MS.gene011334.t1	MTR_4g104860	27.632	228	131	5	102	327	1	196	3.68e-17	81.3
MS.gene011334.t1	MTR_7g018240	31.319	546	367	3	93	634	87	628	1.01e-93	302
MS.gene011334.t1	MTR_7g018240	24.832	447	282	11	65	501	192	594	1.94e-18	89.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene011334.t1	AT3G48250	49.289	633	298	5	1	623	1	620	0.0	629
MS.gene011334.t1	AT5G15980	30.634	568	381	6	80	635	101	667	5.69e-93	301
MS.gene011334.t1	AT5G15980	22.378	429	266	10	206	599	90	486	6.43e-16	82.0
MS.gene011334.t1	AT3G02490	29.369	555	384	3	80	626	95	649	2.49e-86	283
MS.gene011334.t1	AT1G12775	25.956	366	253	8	248	602	102	460	1.81e-30	127
MS.gene011334.t1	AT1G12775	24.650	357	252	6	253	599	143	492	5.72e-25	110
MS.gene011334.t1	AT1G12775	27.083	288	202	4	259	543	221	503	5.72e-22	100
MS.gene011334.t1	AT1G12775	22.535	426	279	9	125	542	224	606	4.70e-17	85.5
MS.gene011334.t1	AT1G12775	24.348	230	168	4	377	602	58	285	8.78e-12	68.6
MS.gene011334.t1	AT5G65560	27.826	345	241	5	259	599	246	586	4.04e-30	127

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Find 118 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATAAACAACAGTTTCA+TGG	0.366112	8.4:+21301075	None:intergenic
AAACTGATTGATAGTCTATT+AGG	0.350346	8.4:-21299802	MS.gene011334:CDS
AAAGGTTAAAATTCAACTTT+CGG	0.383018	8.4:-21300685	MS.gene011334:CDS
AAATCTACCTTCTTGAAATA+AGG	0.238021	8.4:+21299591	None:intergenic
AACACGCTCTAAAATTGAGC+TGG	0.461538	8.4:+21301160	None:intergenic
AACATAAACAACAGTTTCAT+GGG	0.490677	8.4:+21301076	None:intergenic
AAGGTGGTTGGTATCATTTC+AGG	0.196755	8.4:-21300744	MS.gene011334:CDS
AAGTTGCTTCTAGAGATAAC+TGG	0.477403	8.4:-21299862	MS.gene011334:CDS
AATACCATCATAGACTGCCT+TGG	0.538720	8.4:+21300242	None:intergenic
AATGCAGAGTGTTGTCAAAA+AGG	0.409932	8.4:-21300763	MS.gene011334:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTTAGTCTGTATAAGATGA+TGG	-	chr8.4:21300859-21300878	MS.gene011334:CDS	30.0%
ATAAGGATTCGAAAATTTGG+AGG	+	chr8.4:21301222-21301241	None:intergenic	30.0%
ATATGCAAGCTATCAATCTT+TGG	-	chr8.4:21300768-21300787	MS.gene011334:CDS	30.0%
ATGATGATTTGAGGAATTTG+AGG	+	chr8.4:21299503-21299522	None:intergenic	30.0%
CTGAAAACTAAATCCAAATC+TGG	+	chr8.4:21300527-21300546	None:intergenic	30.0%
CTTGGATGAATCAAAAAGTT+TGG	+	chr8.4:21301323-21301342	None:intergenic	30.0%
GCATCATATATTTCGAAGTT+TGG	-	chr8.4:21301127-21301146	MS.gene011334:CDS	30.0%
GCTTCTAAATAATAGGATGA+TGG	-	chr8.4:21300400-21300419	MS.gene011334:CDS	30.0%
TATATGATGCAAATGGTTCA+TGG	+	chr8.4:21301117-21301136	None:intergenic	30.0%
TATGCAAGCTATCAATCTTT+GGG	-	chr8.4:21300769-21300788	MS.gene011334:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	21299471	21301378	21299471	ID=MS.gene011334
chr8.4	mRNA	21299471	21301378	21299471	ID=MS.gene011334.t1;Parent=MS.gene011334
chr8.4	exon	21299471	21301378	21299471	ID=MS.gene011334.t1.exon1;Parent=MS.gene011334.t1
chr8.4	CDS	21299471	21301378	21299471	ID=cds.MS.gene011334.t1;Parent=MS.gene011334.t1

Gene Sequence

>MS.gene011334

ATGAATCGCATGAAAGCAATAACCACTTCCCTCAAATTCCTCAAATCATCATCATCACGCGCTACACAGGTTCTTGCAACTCGGAACCAGGTTTCTCGTTTTTCTTCTTCCTCCTTTTCACTTCCTCTGCTGAATCGTTCACACTATCTATTAGCTTTTAACAACAATCATCAAAAACACTATTTTTGTTCAAAACCCAGCTCAATTTTAGAGCGTGTTTACAACAACGATTGGTCTGAAGAGTTAGAGAAAGAGTTGGAACAATGTCGTGAATCATTGACCCATGAAACTGTTGTTTATGTTTTGAAGCGATTGGATAAAAACCCAATTAAAGTTTTTACCTTTTTCAATTGGGTTAGTGAGAAAGATTGGTTTATGGCTAGTTCTTCGGTTTATAGCTTAGTTCTTAGGGTTTTAGCTAGGAATAAGAATATGAAAGAGTTTTGGATTGTTCTTAAGGCTATGAAGGAAAATGGGTTTTATTTAGATGAAGAGACACATTTGATACTTTTGGCGGATTTGAAAAAGGCGAAGATGAAGAGTGATGATGTTGAGTTTTCACGTTTCTATAAAGGGATGCTTGAGCAGGATGCAATGCAGAGTGTTGTCAAAAAGGTGGTTGGTATCATTTCAGGGTCTGATTGGGACGATGAGATTGAGAATGAACTGGAAAAGGTTAAAATTCAACTTTCGGACAATTTCGTGATTAGGGTTATGAAAGAGCTTCGAAATAGTCCTTTAAAGGCTTATAAGTTTTTTCATTGGGTTGGAAAGCAATCTGGTTATCAACGGAATACAGTGACTTATAATGCAGTTGCTAGAGTTCTTCCTAGAATGGAGTCAATTGAGGAGTTTTGGAGTATTCTTGAGGAGATGAAGAGTGTCGGTCATGAATTGGATGTGGATACTTACATTAAGATATCGAGGCAGCTTCTAAATAATAGGATGATGGAGGACAGTGTCAAGCTTTATGAGCATATGATGGATAGTTCTTATAAGCCTACAGCTCCGGATTGCATTGTGCTTTTAAAGAGCCTATCTACAAAGGATAAGCCAGATTTGGATTTAGTTTTCAGGGTAACTAAGAAATTCGAGTCTACAGGGTATACTCTTTCCAAGGCAGTCTATGATGGTATTCATAGGTCTTTGACAGGTGCTGGGAAATTTGATGAAGCTGAAAAGATTGTCGAGACCATGAAAAATGCTGGCTACGAGCCGGATAACATCACATACAGTCAACTTATTTTCGGACTTTGTAAGACGAGGAGGTTCGAAGAAGCACTTAAGGTAATCGATCATATGCAAGCTATCAATCTTTGGGTTGATATCAAGACTTGGACCATCTTGATCCAAGGGTACTGTGCTGCCGGCGAACTAGATGACGCGTTACTTAGTCTGTATAAGATGATGGAAAAGTCTTCCAGTCCAGATGCTGAATTGTTGGAAGTACTGGTTGATGGTTTTGTTAAGCAAAAGAGAATAGACGATGCATACAAGTTGCTTCTAGAGATAACTGGCAAGGGTCATTTAAGTCCATGGCAAGCTACATTCGAGAAACTGATTGATAGTCTATTAGGAGTCAGAAAGTTTGAGGAGGCGCTCGACCTTCTTCGTTTGATGAAGTCTAAACAATGCTCTCCATACCATGAACCATTTGCATCATATATTTCGAAGTTTGGGACCATGGAGGATGCTGCGGAATTCCTGAAGGCATTGAGTATAAAAAATTACCCATCTCATTCAGTTTACCTCCAAATTTTCGAATCCTTATTTCAAGAAGGTAGATTTTCAGAGGCAAAAGATCTATTGTACAGGTGTCCTCACCATATCCGGGAAAATAGTAAAATCTCCAAACTTTTTGATTCATCCAAGAGTCAGGCGACCGAGAGTCAAATGGCTGCTACTTGA

Protein sequence

>MS.gene011334.t1

MNRMKAITTSLKFLKSSSSRATQVLATRNQVSRFSSSSFSLPLLNRSHYLLAFNNNHQKHYFCSKPSSILERVYNNDWSEELEKELEQCRESLTHETVVYVLKRLDKNPIKVFTFFNWVSEKDWFMASSSVYSLVLRVLARNKNMKEFWIVLKAMKENGFYLDEETHLILLADLKKAKMKSDDVEFSRFYKGMLEQDAMQSVVKKVVGIISGSDWDDEIENELEKVKIQLSDNFVIRVMKELRNSPLKAYKFFHWVGKQSGYQRNTVTYNAVARVLPRMESIEEFWSILEEMKSVGHELDVDTYIKISRQLLNNRMMEDSVKLYEHMMDSSYKPTAPDCIVLLKSLSTKDKPDLDLVFRVTKKFESTGYTLSKAVYDGIHRSLTGAGKFDEAEKIVETMKNAGYEPDNITYSQLIFGLCKTRRFEEALKVIDHMQAINLWVDIKTWTILIQGYCAAGELDDALLSLYKMMEKSSSPDAELLEVLVDGFVKQKRIDDAYKLLLEITGKGHLSPWQATFEKLIDSLLGVRKFEEALDLLRLMKSKQCSPYHEPFASYISKFGTMEDAAEFLKALSIKNYPSHSVYLQIFESLFQEGRFSEAKDLLYRCPHHIRENSKISKLFDSSKSQATESQMAAT