AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene98062

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98062.t1 MTR_5g045560 91.561 237 20 0 1 237 1 237 2.27e-152 423
MS.gene98062.t1 MTR_5g055100 77.637 237 53 0 1 237 1 237 1.49e-135 380
MS.gene98062.t1 MTR_2g085280 77.119 236 54 0 1 236 1 236 1.49e-133 375
MS.gene98062.t1 MTR_2g085250 77.119 236 54 0 1 236 1 236 3.58e-133 375
MS.gene98062.t1 MTR_5g053390 75.983 229 55 0 1 229 1 229 2.34e-122 347
MS.gene98062.t1 MTR_8g043650 67.089 237 78 0 1 237 1 237 7.66e-115 328
MS.gene98062.t1 MTR_1g075600 70.667 225 66 0 1 225 1 225 9.55e-112 320
MS.gene98062.t1 MTR_1g077360 68.000 225 72 0 1 225 1 225 1.23e-108 312
MS.gene98062.t1 MTR_1g105920 68.018 222 71 0 1 222 1 222 8.43e-106 305
MS.gene98062.t1 MTR_2g030740 67.511 237 77 0 1 237 1 237 9.06e-105 303
MS.gene98062.t1 MTR_1g105910 64.444 225 80 0 1 225 1 225 6.94e-104 300
MS.gene98062.t1 MTR_1g012570 67.089 237 78 0 1 237 1 237 1.23e-101 295
MS.gene98062.t1 MTR_3g052920 65.766 222 76 0 1 222 1 222 2.51e-101 294
MS.gene98062.t1 MTR_1g105905 62.273 220 83 0 18 237 1 220 3.68e-96 280
MS.gene98062.t1 MTR_3g030770 61.702 235 72 3 1 225 1 227 9.21e-96 280
MS.gene98062.t1 MTR_1g108510 61.702 235 72 3 1 225 1 227 3.42e-95 278
MS.gene98062.t1 MTR_0121s0080 59.072 237 96 1 1 237 1 236 7.36e-94 275
MS.gene98062.t1 MTR_2g093190 60.851 235 74 3 1 225 1 227 3.81e-93 273
MS.gene98062.t1 MTR_1g108580 57.322 239 85 3 1 237 1 224 5.95e-87 257
MS.gene98062.t1 MTR_3g052870 59.361 219 70 1 1 219 1 200 1.24e-86 256
MS.gene98062.t1 MTR_1g106070 66.298 181 61 0 1 181 1 181 1.80e-82 244
MS.gene98062.t1 MTR_7g062350 52.119 236 111 2 3 237 14 248 8.53e-77 232
MS.gene98062.t1 MTR_1g075570 58.989 178 59 1 18 195 1 164 1.51e-60 188
MS.gene98062.t1 MTR_3g080940 47.191 178 94 0 1 178 1 178 4.73e-56 178
MS.gene98062.t1 MTR_0121s0100 66.406 128 43 0 1 128 1 128 2.60e-54 171
MS.gene98062.t1 MTR_3g030780 65.041 123 43 0 1 123 1 123 2.14e-52 166
MS.gene98062.t1 MTR_3g067910 74.510 102 26 0 21 122 2 103 3.81e-49 157
MS.gene98062.t1 MTR_3g067875 92.857 56 4 0 18 73 1 56 2.29e-30 107
MS.gene98062.t1 MTR_3g067915 59.341 91 37 0 33 123 3 93 5.65e-30 107
MS.gene98062.t1 MTR_8g086290 36.196 163 100 1 5 167 8 166 1.44e-29 109
MS.gene98062.t1 MTR_7g028448 40.000 155 81 2 5 159 8 150 4.39e-29 107
MS.gene98062.t1 MTR_4g036915 40.000 155 81 2 5 159 8 150 4.39e-29 107
MS.gene98062.t1 MTR_2g105290 34.545 165 104 1 5 169 8 168 4.92e-28 105
MS.gene98062.t1 MTR_3g067870 74.603 63 16 0 16 78 83 145 1.05e-24 96.3
MS.gene98062.t1 MTR_1g108500 55.208 96 22 1 22 117 110 184 2.14e-24 99.4
MS.gene98062.t1 MTR_4g131030 32.022 178 96 3 9 171 2 169 6.58e-24 95.5
MS.gene98062.t1 MTR_1g047550 53.247 77 36 0 9 85 2 78 3.20e-23 92.8
MS.gene98062.t1 MTR_1g063160 33.939 165 93 3 9 171 2 152 3.67e-23 92.8
MS.gene98062.t1 MTR_8g051580 40.625 128 67 3 9 131 2 125 4.55e-23 92.4
MS.gene98062.t1 MTR_8g079502 56.338 71 31 0 9 79 2 72 6.87e-23 92.0
MS.gene98062.t1 MTR_8g046350 34.965 143 83 3 9 147 2 138 4.01e-21 87.0
MS.gene98062.t1 MTR_1g054265 49.367 79 40 0 9 87 2 80 4.73e-21 87.0
MS.gene98062.t1 MTR_4g127140 32.597 181 108 3 5 175 8 184 1.48e-20 85.9
MS.gene98062.t1 MTR_4g094632 40.351 114 65 2 9 121 2 113 5.31e-20 84.0
MS.gene98062.t1 MTR_3g005530 52.941 68 32 0 9 76 2 69 1.13e-18 82.0
MS.gene98062.t1 MTR_4g094638 55.072 69 31 0 9 77 2 70 2.18e-18 80.1
MS.gene98062.t1 MTR_4g102530 50.685 73 36 0 10 82 3 75 5.88e-18 79.7
MS.gene98062.t1 MTR_3g452380 48.649 74 38 0 3 76 11 84 6.40e-18 80.1
MS.gene98062.t1 MTR_4g093970 54.545 66 30 0 10 75 29 94 8.35e-18 79.7
MS.gene98062.t1 MTR_8g033270 51.899 79 36 1 9 85 2 80 1.41e-17 79.3
MS.gene98062.t1 MTR_5g066180 51.471 68 33 0 9 76 2 69 1.62e-17 79.0
MS.gene98062.t1 MTR_1g053070 40.000 120 47 2 9 103 2 121 2.15e-17 79.0
MS.gene98062.t1 MTR_4g109830 52.174 69 32 1 9 76 2 70 4.93e-17 77.8
MS.gene98062.t1 MTR_8g087860 51.471 68 33 0 9 76 18 85 7.39e-17 77.4
MS.gene98062.t1 MTR_8g022970 33.750 160 85 5 10 159 19 167 9.72e-17 75.9
MS.gene98062.t1 MTR_0003s0590 54.412 68 31 0 9 76 2 69 1.51e-16 76.6
MS.gene98062.t1 MTR_7g075870 53.731 67 31 0 10 76 3 69 1.61e-16 75.9
MS.gene98062.t1 MTR_2g017865 51.471 68 33 0 9 76 17 84 1.61e-16 76.6
MS.gene98062.t1 MTR_6g464720 52.174 69 32 1 9 76 2 70 3.05e-16 75.9
MS.gene98062.t1 MTR_1g101970 52.941 68 32 0 9 76 2 69 3.56e-16 74.3
MS.gene98062.t1 MTR_2g009890 46.053 76 41 0 9 84 2 77 3.77e-16 75.9
MS.gene98062.t1 MTR_5g032150 50.000 68 34 0 9 76 2 69 4.58e-16 75.1
MS.gene98062.t1 MTR_8g033220 50.725 69 34 0 10 78 3 71 5.26e-16 74.7
MS.gene98062.t1 MTR_5g032520 50.000 68 34 0 9 76 2 69 5.47e-16 74.7
MS.gene98062.t1 MTR_8g033220 50.725 69 34 0 10 78 3 71 5.56e-16 74.7
MS.gene98062.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 6.13e-16 74.7
MS.gene98062.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 6.29e-16 74.3
MS.gene98062.t1 MTR_4g084740 46.067 89 46 2 9 95 2 90 8.14e-16 75.9
MS.gene98062.t1 MTR_6g015975 52.174 69 32 1 9 76 2 70 9.25e-16 74.3
MS.gene98062.t1 MTR_7g016600 52.174 69 32 1 9 76 2 70 1.31e-15 73.9
MS.gene98062.t1 MTR_3g102570 51.429 70 33 1 9 77 2 71 1.98e-15 74.3
MS.gene98062.t1 MTR_1g038300 33.974 156 69 5 9 130 2 157 2.10e-15 73.2
MS.gene98062.t1 MTR_3g109930 33.099 142 75 5 27 159 20 150 2.41e-15 72.0
MS.gene98062.t1 MTR_5g021270 51.429 70 32 1 9 76 2 71 2.98e-15 72.8
MS.gene98062.t1 MTR_5g021270 51.429 70 32 1 9 76 2 71 3.06e-15 72.8
MS.gene98062.t1 MTR_7g075870 52.941 68 31 1 10 76 3 70 3.19e-15 72.4
MS.gene98062.t1 MTR_8g066260 47.826 69 35 1 9 76 2 70 3.95e-15 72.4
MS.gene98062.t1 MTR_3g088615 47.143 70 35 1 9 76 2 71 4.05e-15 71.2
MS.gene98062.t1 MTR_7g016630 45.833 72 38 1 9 79 2 73 4.76e-15 72.8
MS.gene98062.t1 MTR_1g029670 51.515 66 31 1 9 74 2 66 5.25e-15 70.9
MS.gene98062.t1 MTR_2g461710 55.357 56 25 0 9 64 2 57 5.40e-15 67.8
MS.gene98062.t1 MTR_5g046870 50.725 69 33 1 9 76 2 70 6.71e-15 68.9
MS.gene98062.t1 MTR_5g046790 47.826 69 35 1 9 76 2 70 6.90e-15 71.2
MS.gene98062.t1 MTR_4g051538 34.868 152 78 5 1 147 1 136 1.07e-14 71.2
MS.gene98062.t1 MTR_5g066960 50.877 57 28 0 9 65 2 58 2.42e-14 65.9
MS.gene98062.t1 MTR_7g075850 45.122 82 42 2 9 87 2 83 5.59e-14 69.7
MS.gene98062.t1 MTR_3g113030 49.206 63 32 0 9 71 2 64 5.96e-14 69.3
MS.gene98062.t1 MTR_3g437790 30.070 143 83 3 26 159 30 164 6.56e-14 68.2
MS.gene98062.t1 MTR_8g097090 49.275 69 34 1 9 76 2 70 8.67e-14 68.9
MS.gene98062.t1 MTR_4g109810 55.357 56 25 0 9 64 2 57 9.67e-14 68.9
MS.gene98062.t1 MTR_3g084980 55.357 56 25 0 9 64 2 57 1.45e-13 68.2
MS.gene98062.t1 MTR_4g093030 28.105 153 83 3 9 135 2 153 7.93e-13 64.7
MS.gene98062.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 1.94e-11 61.2
MS.gene98062.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 2.12e-11 61.2
MS.gene98062.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 2.15e-11 61.2
MS.gene98062.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 2.19e-11 61.6
MS.gene98062.t1 MTR_4g108720 41.558 77 42 2 9 83 2 77 2.46e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98062.t1 AT5G60440 48.469 196 91 4 5 190 3 198 6.25e-52 170
MS.gene98062.t1 AT1G01530 43.915 189 96 4 4 191 2 181 2.73e-42 144
MS.gene98062.t1 AT1G65360 39.149 235 122 5 5 230 3 225 7.25e-40 137
MS.gene98062.t1 AT2G24840 48.125 160 74 4 9 163 63 218 1.07e-39 138
MS.gene98062.t1 AT4G36590 42.424 165 83 4 5 160 3 164 1.16e-33 122
MS.gene98062.t1 AT3G04100 33.333 162 104 2 2 159 7 168 8.09e-27 103
MS.gene98062.t1 AT1G72350 57.534 73 29 1 9 81 43 113 7.00e-22 90.5
MS.gene98062.t1 AT1G28460 35.714 140 87 1 5 141 4 143 3.77e-21 87.4
MS.gene98062.t1 AT3G66656 37.815 119 70 1 9 123 2 120 5.07e-21 87.0
MS.gene98062.t1 AT2G34440 52.113 71 34 0 9 79 2 72 6.11e-21 86.7
MS.gene98062.t1 AT5G51870 38.462 130 60 3 5 126 21 138 2.38e-19 83.2
MS.gene98062.t1 AT2G45650 57.353 68 29 0 9 76 2 69 3.36e-19 84.0
MS.gene98062.t1 AT2G45660 55.882 68 30 0 10 77 3 70 5.83e-19 81.3
MS.gene98062.t1 AT5G51870 38.400 125 57 3 10 126 3 115 1.36e-18 80.5
MS.gene98062.t1 AT2G45660 55.882 68 30 0 10 77 3 70 1.72e-18 81.3
MS.gene98062.t1 AT5G51870 38.400 125 57 3 10 126 3 115 2.25e-18 80.9
MS.gene98062.t1 AT4G22950 49.315 73 37 0 10 82 3 75 2.85e-18 79.7
MS.gene98062.t1 AT4G09960 51.471 68 33 0 9 76 2 69 2.97e-18 80.5
MS.gene98062.t1 AT5G51870 38.281 128 59 3 7 126 10 125 3.53e-18 80.9
MS.gene98062.t1 AT4G09960 51.471 68 33 0 9 76 3 70 3.58e-18 80.9
MS.gene98062.t1 AT4G09960 51.471 68 33 0 9 76 2 69 3.74e-18 80.5
MS.gene98062.t1 AT4G09960 51.471 68 33 0 9 76 12 79 4.81e-18 80.5
MS.gene98062.t1 AT5G51870 38.400 125 57 3 10 126 3 115 5.88e-18 79.7
MS.gene98062.t1 AT4G09960 51.471 68 33 0 9 76 28 95 6.87e-18 80.5
MS.gene98062.t1 AT1G29962 31.902 163 102 4 5 161 4 163 9.42e-18 78.6
MS.gene98062.t1 AT4G22950 50.704 71 35 0 10 80 3 73 9.83e-18 79.3
MS.gene98062.t1 AT4G22950 50.704 71 35 0 10 80 3 73 9.83e-18 79.3
MS.gene98062.t1 AT3G57230 50.000 68 34 0 9 76 2 69 1.23e-17 77.4
MS.gene98062.t1 AT4G09960 51.471 68 33 0 9 76 97 164 1.70e-17 80.5
MS.gene98062.t1 AT3G57390 54.412 68 31 0 9 76 2 69 2.82e-17 78.2
MS.gene98062.t1 AT1G28450 32.867 143 90 3 5 141 4 146 3.20e-17 77.0
MS.gene98062.t1 AT5G62165 52.239 67 32 0 10 76 3 69 3.63e-17 74.7
MS.gene98062.t1 AT4G37940 51.471 68 33 0 9 76 2 69 4.15e-17 77.4
MS.gene98062.t1 AT5G10140 50.725 69 33 1 9 76 2 70 4.51e-17 76.3
MS.gene98062.t1 AT4G37940 51.471 68 33 0 9 76 2 69 4.64e-17 77.8
MS.gene98062.t1 AT4G18960 49.333 75 38 0 2 76 11 85 4.65e-17 78.2
MS.gene98062.t1 AT4G37940 51.471 68 33 0 9 76 2 69 4.78e-17 76.6
MS.gene98062.t1 AT3G57230 50.000 68 34 0 9 76 2 69 5.36e-17 77.8
MS.gene98062.t1 AT3G57230 50.000 68 34 0 9 76 2 69 5.36e-17 77.8
MS.gene98062.t1 AT5G62165 52.239 67 32 0 10 76 3 69 5.41e-17 75.9
MS.gene98062.t1 AT5G62165 52.239 67 32 0 10 76 3 69 5.41e-17 75.9
MS.gene98062.t1 AT5G62165 52.239 67 32 0 10 76 3 69 5.41e-17 75.9
MS.gene98062.t1 AT2G22540 52.941 68 32 0 9 76 2 69 5.53e-17 77.8
MS.gene98062.t1 AT2G22540 52.941 68 32 0 9 76 2 69 5.53e-17 77.8
MS.gene98062.t1 AT2G42830 47.368 76 40 0 1 76 9 84 6.06e-17 77.8
MS.gene98062.t1 AT3G57390 54.412 68 31 0 9 76 2 69 6.54e-17 77.8
MS.gene98062.t1 AT2G42830 47.368 76 40 0 1 76 9 84 6.64e-17 77.8
MS.gene98062.t1 AT5G62165 52.239 67 32 0 10 76 3 69 6.74e-17 75.5
MS.gene98062.t1 AT5G62165 52.239 67 32 0 10 76 3 69 6.74e-17 75.5
MS.gene98062.t1 AT5G62165 52.239 67 32 0 10 76 3 69 6.74e-17 75.5
MS.gene98062.t1 AT5G62165 52.239 67 32 0 10 76 3 69 6.74e-17 75.5
MS.gene98062.t1 AT5G62165 52.239 67 32 0 10 76 3 69 6.74e-17 75.5
MS.gene98062.t1 AT5G10140 50.725 69 33 1 9 76 2 70 7.55e-17 76.3
MS.gene98062.t1 AT5G10140 50.725 69 33 1 9 76 2 70 8.47e-17 76.3
MS.gene98062.t1 AT3G58780 50.704 71 35 0 6 76 14 84 8.65e-17 77.4
MS.gene98062.t1 AT3G58780 50.704 71 35 0 6 76 20 90 9.54e-17 77.4
MS.gene98062.t1 AT5G10140 50.725 69 33 1 9 76 2 70 9.77e-17 75.9
MS.gene98062.t1 AT5G51860 35.443 158 94 2 10 163 3 156 1.02e-16 76.3
MS.gene98062.t1 AT4G24540 52.941 68 32 0 9 76 2 69 1.17e-16 76.3
MS.gene98062.t1 AT5G13790 52.941 68 32 0 9 76 2 69 1.19e-16 77.4
MS.gene98062.t1 AT5G13790 52.941 68 32 0 9 76 2 69 1.24e-16 77.0
MS.gene98062.t1 AT5G51860 35.443 158 94 2 10 163 3 156 1.32e-16 76.3
MS.gene98062.t1 AT5G62165 52.239 67 32 0 10 76 3 69 1.67e-16 75.5
MS.gene98062.t1 AT5G62165 52.239 67 32 0 10 76 3 69 1.67e-16 75.5
MS.gene98062.t1 AT5G62165 52.239 67 32 0 10 76 3 69 1.90e-16 75.5
MS.gene98062.t1 AT5G62165 52.239 67 32 0 10 76 3 69 1.90e-16 75.5
MS.gene98062.t1 AT5G62165 52.239 67 32 0 10 76 3 69 1.90e-16 75.5
MS.gene98062.t1 AT3G58780 50.704 71 35 0 6 76 14 84 2.14e-16 76.6
MS.gene98062.t1 AT3G54340 50.000 70 33 1 9 76 2 71 3.01e-16 75.5
MS.gene98062.t1 AT2G22630 50.000 68 34 0 9 76 2 69 3.85e-16 75.1
MS.gene98062.t1 AT2G22630 50.000 68 34 0 9 76 2 69 3.85e-16 75.1
MS.gene98062.t1 AT3G61120 52.941 68 32 0 9 76 2 69 4.34e-16 75.5
MS.gene98062.t1 AT1G77980 50.704 71 34 1 9 78 2 72 4.35e-16 76.6
MS.gene98062.t1 AT1G77950 46.835 79 40 2 9 86 2 79 5.22e-16 75.1
MS.gene98062.t1 AT1G77950 46.835 79 40 2 9 86 2 79 5.22e-16 75.1
MS.gene98062.t1 AT1G77950 46.835 79 40 2 9 86 2 79 5.22e-16 75.1
MS.gene98062.t1 AT1G77950 46.835 79 40 2 9 86 2 79 5.22e-16 75.1
MS.gene98062.t1 AT3G30260 47.826 69 35 1 9 76 2 70 6.32e-16 75.1
MS.gene98062.t1 AT1G22130 49.367 79 38 2 9 86 2 79 7.94e-16 75.9
MS.gene98062.t1 AT4G11880 50.000 72 35 1 10 80 3 74 1.28e-15 72.8
MS.gene98062.t1 AT4G11880 50.000 72 35 1 10 80 3 74 1.28e-15 72.8
MS.gene98062.t1 AT5G23260 49.333 75 36 1 5 77 14 88 1.53e-15 74.3
MS.gene98062.t1 AT5G23260 49.333 75 36 1 5 77 14 88 1.59e-15 73.9
MS.gene98062.t1 AT2G14210 49.275 69 34 1 9 76 2 70 1.64e-15 73.6
MS.gene98062.t1 AT5G60910 49.275 69 34 1 9 76 2 70 1.92e-15 73.6
MS.gene98062.t1 AT1G26310 49.275 69 34 1 9 76 2 70 2.03e-15 73.6
MS.gene98062.t1 AT4G11880 50.000 72 35 1 10 80 3 74 2.05e-15 73.2
MS.gene98062.t1 AT4G11880 50.000 72 35 1 10 80 3 74 2.05e-15 73.2
MS.gene98062.t1 AT2G14210 49.275 69 34 1 9 76 2 70 2.40e-15 73.2
MS.gene98062.t1 AT5G15800 52.174 69 32 1 9 76 2 70 2.86e-15 73.2
MS.gene98062.t1 AT1G17310 54.054 74 32 1 8 81 47 118 4.00e-15 72.0
MS.gene98062.t1 AT5G15800 52.174 69 32 1 9 76 2 70 4.40e-15 72.8
MS.gene98062.t1 AT5G23260 50.704 71 33 1 9 77 2 72 5.39e-15 72.4
MS.gene98062.t1 AT5G23260 50.704 71 33 1 9 77 2 72 5.56e-15 72.0
MS.gene98062.t1 AT1G17310 54.054 74 32 1 8 81 58 129 6.05e-15 72.0
MS.gene98062.t1 AT5G20240 48.571 70 34 1 9 76 2 71 6.11e-15 70.1
MS.gene98062.t1 AT1G69120 46.377 69 36 1 9 76 2 70 7.32e-15 71.6
MS.gene98062.t1 AT5G65050 46.377 69 36 1 9 76 2 70 7.34e-15 70.5
MS.gene98062.t1 AT5G20240 48.571 70 34 1 9 76 2 71 9.32e-15 70.9
MS.gene98062.t1 AT2G22540 51.471 68 28 1 9 76 2 64 1.25e-14 71.2
MS.gene98062.t1 AT1G69120 46.377 69 36 1 9 76 2 70 1.42e-14 71.2
MS.gene98062.t1 AT5G65050 46.377 69 36 1 9 76 2 70 1.44e-14 70.1
MS.gene98062.t1 AT5G65050 46.377 69 36 1 9 76 2 70 1.54e-14 69.7
MS.gene98062.t1 AT5G65050 46.377 69 36 1 9 76 2 70 1.61e-14 70.1
MS.gene98062.t1 AT1G18750 30.841 214 112 12 9 195 2 206 2.74e-14 71.6
MS.gene98062.t1 AT1G18750 30.841 214 112 12 9 195 2 206 3.00e-14 71.6
MS.gene98062.t1 AT1G47760 33.043 115 67 2 9 115 2 114 3.34e-14 68.9
MS.gene98062.t1 AT2G03710 48.571 70 34 2 9 76 2 71 3.46e-14 68.9
MS.gene98062.t1 AT3G58780 52.459 61 29 0 6 66 14 74 4.87e-14 69.7
MS.gene98062.t1 AT5G65060 46.377 69 36 1 9 76 2 70 5.50e-14 68.6
MS.gene98062.t1 AT5G65060 46.377 69 36 1 9 76 2 70 5.53e-14 68.6
MS.gene98062.t1 AT3G02310 47.826 69 35 1 9 76 2 70 5.61e-14 68.6
MS.gene98062.t1 AT5G65060 46.377 69 36 1 9 76 2 70 5.92e-14 68.6
MS.gene98062.t1 AT2G03710 48.571 70 34 2 9 76 2 71 6.96e-14 69.3
MS.gene98062.t1 AT2G03710 48.571 70 34 2 9 76 2 71 7.11e-14 69.3
MS.gene98062.t1 AT5G65070 44.928 69 37 1 9 76 2 70 7.45e-14 67.0
MS.gene98062.t1 AT1G71692 45.714 70 37 1 9 77 2 71 7.81e-14 68.6
MS.gene98062.t1 AT3G58780 52.459 61 29 0 6 66 14 74 8.28e-14 69.3
MS.gene98062.t1 AT1G24260 49.275 69 34 1 9 76 2 70 8.81e-14 68.9
MS.gene98062.t1 AT1G24260 49.275 69 34 1 9 76 2 70 9.03e-14 68.9
MS.gene98062.t1 AT1G24260 49.275 69 34 1 9 76 2 70 9.28e-14 68.9
MS.gene98062.t1 AT3G02310 47.826 69 35 1 9 76 2 70 1.14e-13 68.6
MS.gene98062.t1 AT5G65070 44.928 69 37 1 9 76 2 70 1.27e-13 67.8
MS.gene98062.t1 AT5G65070 44.928 69 37 1 9 76 2 70 2.71e-13 67.4
MS.gene98062.t1 AT5G65070 44.928 69 37 1 9 76 2 70 3.45e-13 66.6
MS.gene98062.t1 AT5G65070 50.877 57 28 0 9 65 2 58 1.24e-12 65.5
MS.gene98062.t1 AT2G03060 31.034 174 94 8 9 164 2 167 3.18e-12 65.9
MS.gene98062.t1 AT1G18750 33.945 109 63 4 9 115 2 103 3.31e-12 65.9
MS.gene98062.t1 AT2G03060 31.034 174 94 8 9 164 2 167 3.45e-12 65.5
MS.gene98062.t1 AT2G03060 31.034 174 94 8 9 164 2 167 3.45e-12 65.5
MS.gene98062.t1 AT2G03060 31.034 174 94 8 9 164 2 167 3.45e-12 65.5
MS.gene98062.t1 AT5G65080 40.260 77 45 1 1 76 1 77 4.93e-12 63.2
MS.gene98062.t1 AT4G37435 43.056 72 40 1 9 79 2 73 5.03e-12 63.2
MS.gene98062.t1 AT5G65080 45.161 62 34 0 1 62 1 62 1.45e-11 62.0
MS.gene98062.t1 AT1G46408 35.185 108 62 3 10 109 5 112 1.75e-11 62.8
MS.gene98062.t1 AT5G49420 38.462 91 50 3 5 89 3 93 2.94e-11 62.8

Find 60 sgRNAs with CRISPR-Local

Find 64 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTATTTGGCTTCAACAATA+TGG 0.200420 5.4:+36119123 MS.gene98062:CDS
TGCTGATAACGTTGAAATTC+AGG 0.208304 5.4:+36118964 MS.gene98062:CDS
ATGTTTCAACCTCACTTATT+TGG 0.211284 5.4:+36119109 MS.gene98062:CDS
ATCGCGTGATCTCGTCGTTT+TGG 0.284953 5.4:-36118715 None:intergenic
CTTCCATTTCTTGTTGGAAA+TGG 0.300871 5.4:+36119004 MS.gene98062:CDS
TCTATGACCGTTTCAACATT+TGG 0.310111 5.4:-36118668 None:intergenic
TCCCTTTGATAGGATGAATA+TGG 0.327781 5.4:+36118883 MS.gene98062:CDS
GGTGGACTTGTCCCTTTGAT+AGG 0.330711 5.4:+36118873 MS.gene98062:CDS
CAATCCCTTCCATTTCTTGT+TGG 0.363802 5.4:+36118998 MS.gene98062:CDS
CTATGACCGTTTCAACATTT+GGG 0.363837 5.4:-36118667 None:intergenic
TGGATCATTCAAGAAGGCTT+TGG 0.378658 5.4:+36118913 MS.gene98062:CDS
GAACCATTTCCAACAAGAAA+TGG 0.378706 5.4:-36119007 None:intergenic
TTATTTGGCTTCAACAATAT+GGG 0.380387 5.4:+36119124 MS.gene98062:CDS
AGCGAGCTTTGCACCCTTTG+TGG 0.386397 5.4:+36118587 MS.gene98062:CDS
CCTCATTATTCTTTCGCTGT+TGG 0.398884 5.4:-36118841 None:intergenic
CAACAAGAAATGGAAGGGAT+TGG 0.423570 5.4:-36118997 None:intergenic
ATGCTCAAACTGCATGTTTG+AGG 0.448301 5.4:-36119032 None:intergenic
ATAAGTGAGGTTGAAACATT+GGG 0.452897 5.4:-36119105 None:intergenic
GCTTCGAGAAAGTTACTTGA+AGG 0.468268 5.4:-36118538 None:intergenic
AACAAGAAATGGAAGGGATT+GGG 0.469832 5.4:-36118996 None:intergenic
CATAGACCGTTATCTCTCTC+AGG 0.484381 5.4:+36118685 MS.gene98062:CDS
GAAGGTGGGCATGGTCCCCA+TGG 0.487450 5.4:+36119151 MS.gene98062:CDS
GCTGATAACGTTGAAATTCA+GGG 0.487876 5.4:+36118965 MS.gene98062:CDS
AATAAGTGAGGTTGAAACAT+TGG 0.488497 5.4:-36119106 None:intergenic
ATCATTCAAGAAGGCTTTGG+AGG 0.495610 5.4:+36118916 MS.gene98062:CDS
AACAATATGGGAGGAGAAGG+TGG 0.496190 5.4:+36119136 MS.gene98062:CDS
GACCATATTCATCCTATCAA+AGG 0.516254 5.4:-36118885 None:intergenic
AGCAACATATGCACCACAAA+GGG 0.521852 5.4:-36118600 None:intergenic
AAGGTGGGCATGGTCCCCAT+GGG 0.524166 5.4:+36119152 MS.gene98062:CDS
TGGTCACCCAAATGTTGAAA+CGG 0.524927 5.4:+36118661 MS.gene98062:CDS
TACATTGACTCGTATGAAAG+AGG 0.527218 5.4:+36118781 MS.gene98062:CDS
GTTGGATCAGCTCATTTGCA+TGG 0.528128 5.4:-36118823 None:intergenic
CCTTCTTGAATGATCCAAGT+TGG 0.533724 5.4:-36118907 None:intergenic
ACCATATTCATCCTATCAAA+GGG 0.536947 5.4:-36118884 None:intergenic
ATGGGAGGAGAAGGTGGGCA+TGG 0.547684 5.4:+36119142 MS.gene98062:CDS
TTCAACAATATGGGAGGAGA+AGG 0.556945 5.4:+36119133 MS.gene98062:CDS
AGGATGAATATGGTCCAACT+TGG 0.567940 5.4:+36118893 MS.gene98062:CDS
CCAACTTGGATCATTCAAGA+AGG 0.570743 5.4:+36118907 MS.gene98062:CDS
GCTCGGATCAAAAGAACCCA+TGG 0.573893 5.4:-36119168 None:intergenic
GTGGCACCTGAGAGAGATAA+CGG 0.575928 5.4:-36118691 None:intergenic
ATTTCCAACAAGAAATGGAA+GGG 0.580414 5.4:-36119002 None:intergenic
ATCATTAAGCTCACGCACAC+TGG 0.588533 5.4:-36118759 None:intergenic
CTTTCTCGAAGCGCCGTAGT+GGG 0.591444 5.4:+36118549 MS.gene98062:CDS
AATGAAAAGACCTTCTCACT+AGG 0.596511 5.4:-36118638 None:intergenic
CTTTCTTGAATAGCCCACTA+CGG 0.597990 5.4:-36118562 None:intergenic
ACTTTCTCGAAGCGCCGTAG+TGG 0.601112 5.4:+36118548 MS.gene98062:CDS
TTTGGCTTCAACAATATGGG+AGG 0.603260 5.4:+36119127 MS.gene98062:CDS
AGAAAGATCGAATCTTGTTG+AGG 0.605809 5.4:-36119064 None:intergenic
ACAATATGGGAGGAGAAGGT+GGG 0.607591 5.4:+36119137 MS.gene98062:CDS
TATATTCTCACCTAGTGAGA+AGG 0.609022 5.4:+36118628 MS.gene98062:CDS
CTCGGATCAAAAGAACCCAT+GGG 0.613719 5.4:-36119167 None:intergenic
CATTTCCAACAAGAAATGGA+AGG 0.615915 5.4:-36119003 None:intergenic
TCGAGCGGAAAGAAAACTCA+AGG 0.622335 5.4:+36118473 MS.gene98062:CDS
TGTGCTTCAGCCATGTCGAG+CGG 0.623248 5.4:+36118458 None:intergenic
GCTCACGCACACTGGCATGA+CGG 0.625752 5.4:-36118751 None:intergenic
CCAACAGCGAAAGAATAATG+AGG 0.627023 5.4:+36118841 MS.gene98062:CDS
GAGCAACATATGCACCACAA+AGG 0.640810 5.4:-36118601 None:intergenic
TTGTTGAAGCCAAATAAGTG+AGG 0.672964 5.4:-36119118 None:intergenic
CGAGATCACGCGATTCATCG+AGG 0.745713 5.4:+36118724 MS.gene98062:CDS
TCGGATCAAAAGAACCCATG+GGG 0.747336 5.4:-36119166 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTTGGCTTCAACAATAT+GGG + chr5.4:36119124-36119143 MS.gene98062:CDS 25.0%
!!! TCTTTCTAGCACAATTTTTA+CGG + chr5.4:36119080-36119099 MS.gene98062:CDS 25.0%
!!! TCTTTTTCATCTCAATCTTT+TGG - chr5.4:36118502-36118521 None:intergenic 25.0%
AATAAGTGAGGTTGAAACAT+TGG - chr5.4:36119109-36119128 None:intergenic 30.0%
ACCATATTCATCCTATCAAA+GGG - chr5.4:36118887-36118906 None:intergenic 30.0%
ATAAGTGAGGTTGAAACATT+GGG - chr5.4:36119108-36119127 None:intergenic 30.0%
ATGTTTCAACCTCACTTATT+TGG + chr5.4:36119109-36119128 MS.gene98062:CDS 30.0%
ATTTCCAACAAGAAATGGAA+GGG - chr5.4:36119005-36119024 None:intergenic 30.0%
! AGAATAATGAGGCTCATTTT+TGG + chr5.4:36118852-36118871 MS.gene98062:CDS 30.0%
! CTTATTTGGCTTCAACAATA+TGG + chr5.4:36119123-36119142 MS.gene98062:CDS 30.0%
AACAAGAAATGGAAGGGATT+GGG - chr5.4:36118999-36119018 None:intergenic 35.0%
AATGAAAAGACCTTCTCACT+AGG - chr5.4:36118641-36118660 None:intergenic 35.0%
AGAAAGATCGAATCTTGTTG+AGG - chr5.4:36119067-36119086 None:intergenic 35.0%
CATTTCCAACAAGAAATGGA+AGG - chr5.4:36119006-36119025 None:intergenic 35.0%
CTATGACCGTTTCAACATTT+GGG - chr5.4:36118670-36118689 None:intergenic 35.0%
CTTCCATTTCTTGTTGGAAA+TGG + chr5.4:36119004-36119023 MS.gene98062:CDS 35.0%
GAACCATTTCCAACAAGAAA+TGG - chr5.4:36119010-36119029 None:intergenic 35.0%
GACCATATTCATCCTATCAA+AGG - chr5.4:36118888-36118907 None:intergenic 35.0%
TATATTCTCACCTAGTGAGA+AGG + chr5.4:36118628-36118647 MS.gene98062:CDS 35.0%
TCCCTTTGATAGGATGAATA+TGG + chr5.4:36118883-36118902 MS.gene98062:CDS 35.0%
TCTATGACCGTTTCAACATT+TGG - chr5.4:36118671-36118690 None:intergenic 35.0%
TTGTTGAAGCCAAATAAGTG+AGG - chr5.4:36119121-36119140 None:intergenic 35.0%
! AGTGAGAAGGTCTTTTCATT+TGG + chr5.4:36118641-36118660 MS.gene98062:CDS 35.0%
! GCTGATAACGTTGAAATTCA+GGG + chr5.4:36118965-36118984 MS.gene98062:CDS 35.0%
! TGCTGATAACGTTGAAATTC+AGG + chr5.4:36118964-36118983 MS.gene98062:CDS 35.0%
!! ATAATGAGGCTCATTTTTGG+TGG + chr5.4:36118855-36118874 MS.gene98062:CDS 35.0%
!! TACATTGACTCGTATGAAAG+AGG + chr5.4:36118781-36118800 MS.gene98062:CDS 35.0%
AGCAACATATGCACCACAAA+GGG - chr5.4:36118603-36118622 None:intergenic 40.0%
AGGATGAATATGGTCCAACT+TGG + chr5.4:36118893-36118912 MS.gene98062:CDS 40.0%
ATGCTCAAACTGCATGTTTG+AGG - chr5.4:36119035-36119054 None:intergenic 40.0%
CAACAAGAAATGGAAGGGAT+TGG - chr5.4:36119000-36119019 None:intergenic 40.0%
CAATCCCTTCCATTTCTTGT+TGG + chr5.4:36118998-36119017 MS.gene98062:CDS 40.0%
CCAACAGCGAAAGAATAATG+AGG + chr5.4:36118841-36118860 MS.gene98062:CDS 40.0%
CCAACTTGGATCATTCAAGA+AGG + chr5.4:36118907-36118926 MS.gene98062:CDS 40.0%
CCTCATTATTCTTTCGCTGT+TGG - chr5.4:36118844-36118863 None:intergenic 40.0%
CCTTCTTGAATGATCCAAGT+TGG - chr5.4:36118910-36118929 None:intergenic 40.0%
CTTTCTTGAATAGCCCACTA+CGG - chr5.4:36118565-36118584 None:intergenic 40.0%
GCTTCGAGAAAGTTACTTGA+AGG - chr5.4:36118541-36118560 None:intergenic 40.0%
TGGATCATTCAAGAAGGCTT+TGG + chr5.4:36118913-36118932 MS.gene98062:CDS 40.0%
TGGTCACCCAAATGTTGAAA+CGG + chr5.4:36118661-36118680 MS.gene98062:CDS 40.0%
TTCAACAATATGGGAGGAGA+AGG + chr5.4:36119133-36119152 MS.gene98062:CDS 40.0%
! ATCATTCAAGAAGGCTTTGG+AGG + chr5.4:36118916-36118935 MS.gene98062:CDS 40.0%
! TTTGGCTTCAACAATATGGG+AGG + chr5.4:36119127-36119146 MS.gene98062:CDS 40.0%
AACAATATGGGAGGAGAAGG+TGG + chr5.4:36119136-36119155 MS.gene98062:CDS 45.0%
ACAATATGGGAGGAGAAGGT+GGG + chr5.4:36119137-36119156 MS.gene98062:CDS 45.0%
ATCATTAAGCTCACGCACAC+TGG - chr5.4:36118762-36118781 None:intergenic 45.0%
CATAGACCGTTATCTCTCTC+AGG + chr5.4:36118685-36118704 MS.gene98062:CDS 45.0%
GAGCAACATATGCACCACAA+AGG - chr5.4:36118604-36118623 None:intergenic 45.0%
GTTGGATCAGCTCATTTGCA+TGG - chr5.4:36118826-36118845 None:intergenic 45.0%
TCGAGCGGAAAGAAAACTCA+AGG + chr5.4:36118473-36118492 MS.gene98062:CDS 45.0%
GTGGCACCTGAGAGAGATAA+CGG - chr5.4:36118694-36118713 None:intergenic 50.0%
! ATCGCGTGATCTCGTCGTTT+TGG - chr5.4:36118718-36118737 None:intergenic 50.0%
! GGTGGACTTGTCCCTTTGAT+AGG + chr5.4:36118873-36118892 MS.gene98062:CDS 50.0%
!! TCGCGTGATCTCGTCGTTTT+GGG - chr5.4:36118717-36118736 None:intergenic 50.0%
AGCGAGCTTTGCACCCTTTG+TGG + chr5.4:36118587-36118606 MS.gene98062:CDS 55.0%
CGAGATCACGCGATTCATCG+AGG + chr5.4:36118724-36118743 MS.gene98062:CDS 55.0%
!! ACTTTCTCGAAGCGCCGTAG+TGG + chr5.4:36118548-36118567 MS.gene98062:CDS 55.0%
!! CGCGTGATCTCGTCGTTTTG+GGG - chr5.4:36118716-36118735 None:intergenic 55.0%
!! CTTTCTCGAAGCGCCGTAGT+GGG + chr5.4:36118549-36118568 MS.gene98062:CDS 55.0%
!!! GTGATCTCGTCGTTTTGGGG+TGG - chr5.4:36118713-36118732 None:intergenic 55.0%
AAGGTGGGCATGGTCCCCAT+GGG + chr5.4:36119152-36119171 MS.gene98062:CDS 60.0%
ATGGGAGGAGAAGGTGGGCA+TGG + chr5.4:36119142-36119161 MS.gene98062:CDS 60.0%
GCTCACGCACACTGGCATGA+CGG - chr5.4:36118754-36118773 None:intergenic 60.0%
GAAGGTGGGCATGGTCCCCA+TGG + chr5.4:36119151-36119170 MS.gene98062:CDS 65.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 36118470 36119183 36118470 ID=MS.gene98062
chr5.4 mRNA 36118470 36119183 36118470 ID=MS.gene98062.t1;Parent=MS.gene98062
chr5.4 exon 36118470 36119183 36118470 ID=MS.gene98062.t1.exon1;Parent=MS.gene98062.t1
chr5.4 CDS 36118470 36119183 36118470 ID=cds.MS.gene98062.t1;Parent=MS.gene98062.t1
Gene Sequence

>MS.gene98062

ATGTCGAGCGGAAAGAAAACTCAAGGTCGCCAAAAGATTGAGATGAAAAAGATGAGCAATGAAAGCAACCTTCAAGTAACTTTCTCGAAGCGCCGTAGTGGGCTATTCAAGAAAGCTAGCGAGCTTTGCACCCTTTGTGGTGCATATGTTGCTCTAATTATATTCTCACCTAGTGAGAAGGTCTTTTCATTTGGTCACCCAAATGTTGAAACGGTCATAGACCGTTATCTCTCTCAGGTGCCACCCCAAAACGACGAGATCACGCGATTCATCGAGGCTTACCGTCATGCCAGTGTGCGTGAGCTTAATGATACATTGACTCGTATGAAAGAGGCACTAGACATTGACAAGAACCATGCAAATGAGCTGATCCAACAGCGAAAGAATAATGAGGCTCATTTTTGGTGGACTTGTCCCTTTGATAGGATGAATATGGTCCAACTTGGATCATTCAAGAAGGCTTTGGAGGATCTTCAAAAACTCGTTGCACATTATGCTGATAACGTTGAAATTCAGGGTACTTCTACCCAATCCCTTCCATTTCTTGTTGGAAATGGTTCATCCTCAAACATGCAGTTTGAGCATCAGCAAAATCCTCAACAAGATTCGATCTTTCTAGCACAATTTTTACGGAACCCAATGTTTCAACCTCACTTATTTGGCTTCAACAATATGGGAGGAGAAGGTGGGCATGGTCCCCATGGGTTCTTTTGA
Protein sequence

>MS.gene98062.t1

MSSGKKTQGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGAYVALIIFSPSEKVFSFGHPNVETVIDRYLSQVPPQNDEITRFIEAYRHASVRELNDTLTRMKEALDIDKNHANELIQQRKNNEAHFWWTCPFDRMNMVQLGSFKKALEDLQKLVAHYADNVEIQGTSTQSLPFLVGNGSSSNMQFEHQQNPQQDSIFLAQFLRNPMFQPHLFGFNNMGGEGGHGPHGFF