Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98527.t1 | XP_003616830.1 | 98.9 | 270 | 3 | 0 | 1 | 270 | 1 | 270 | 3.30E-143 | 517.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98527.t1 | Q84JU4 | 60.4 | 273 | 89 | 3 | 1 | 270 | 1 | 257 | 5.4e-78 | 292.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98527.t1 | G7K7F8 | 98.9 | 270 | 3 | 0 | 1 | 270 | 1 | 270 | 2.3e-143 | 517.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05886 | MS.gene98527 | -0.807751 | 4.34E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98527.t1 | MTR_5g084720 | 98.889 | 270 | 3 | 0 | 1 | 270 | 1 | 270 | 0.0 | 556 |
| MS.gene98527.t1 | MTR_4g117170 | 33.333 | 132 | 82 | 2 | 55 | 180 | 45 | 176 | 9.53e-18 | 79.3 |
| MS.gene98527.t1 | MTR_3g086540 | 33.577 | 137 | 84 | 2 | 51 | 180 | 107 | 243 | 4.74e-14 | 72.0 |
| MS.gene98527.t1 | MTR_3g498735 | 30.345 | 145 | 91 | 2 | 55 | 189 | 682 | 826 | 4.17e-13 | 69.3 |
| MS.gene98527.t1 | MTR_7g023250 | 31.852 | 135 | 85 | 2 | 53 | 180 | 179 | 313 | 1.86e-12 | 67.4 |
| MS.gene98527.t1 | MTR_8g100000 | 31.034 | 145 | 90 | 3 | 55 | 189 | 738 | 882 | 2.26e-12 | 67.4 |
| MS.gene98527.t1 | MTR_8g100000 | 31.034 | 145 | 90 | 3 | 55 | 189 | 696 | 840 | 2.37e-12 | 67.4 |
| MS.gene98527.t1 | MTR_8g089710 | 31.618 | 136 | 86 | 2 | 51 | 179 | 111 | 246 | 3.14e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98527.t1 | AT2G04550 | 59.707 | 273 | 91 | 3 | 1 | 270 | 1 | 257 | 8.82e-110 | 318 |
| MS.gene98527.t1 | AT2G04550 | 72.781 | 169 | 43 | 1 | 1 | 166 | 1 | 169 | 8.81e-94 | 274 |
| MS.gene98527.t1 | AT3G23610 | 36.620 | 142 | 83 | 3 | 47 | 182 | 51 | 191 | 1.98e-21 | 89.7 |
| MS.gene98527.t1 | AT3G23610 | 36.620 | 142 | 83 | 3 | 47 | 182 | 51 | 191 | 2.75e-21 | 89.4 |
| MS.gene98527.t1 | AT3G23610 | 36.429 | 140 | 82 | 3 | 47 | 180 | 51 | 189 | 4.36e-21 | 88.6 |
| MS.gene98527.t1 | AT3G23610 | 36.429 | 140 | 82 | 3 | 47 | 180 | 51 | 189 | 4.63e-21 | 88.6 |
| MS.gene98527.t1 | AT3G23610 | 36.429 | 140 | 82 | 3 | 47 | 180 | 51 | 189 | 1.46e-20 | 87.8 |
| MS.gene98527.t1 | AT3G06110 | 30.370 | 135 | 88 | 1 | 55 | 183 | 32 | 166 | 3.86e-16 | 74.3 |
| MS.gene98527.t1 | AT3G06110 | 30.370 | 135 | 88 | 1 | 55 | 183 | 32 | 166 | 3.86e-16 | 74.3 |
| MS.gene98527.t1 | AT3G06110 | 31.008 | 129 | 85 | 1 | 55 | 183 | 32 | 156 | 6.67e-16 | 73.6 |
Find 75 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTGGTTTGCTTCCTCAAAT+TGG | 0.194462 | 5.2:-72259891 | None:intergenic |
| TGAGGAAGCAAACCAGTTTC+TGG | 0.201283 | 5.2:+72259897 | MS.gene98527:CDS |
| TTAGATGGATTTGTATTAAA+AGG | 0.231249 | 5.2:-72261333 | None:intergenic |
| GGAGCTATATCATTTGTCTT+TGG | 0.255379 | 5.2:-72261198 | None:intergenic |
| CTTGCCGGAGTTTCTTTACT+TGG | 0.311355 | 5.2:+72258114 | MS.gene98527:CDS |
| ACCGGCTCCGAATGTGAAAT+TGG | 0.314708 | 5.2:-72261289 | None:intergenic |
| TTTCGTACTCCTGTAGTTGC+TGG | 0.329145 | 5.2:-72261089 | None:intergenic |
| GAGCTATATCATTTGTCTTT+GGG | 0.329474 | 5.2:-72261197 | None:intergenic |
| TGACAAAAGTTTCCAATTTG+AGG | 0.376714 | 5.2:+72259879 | MS.gene98527:CDS |
| GAGGGATAAGGAGCGTGTTC+TGG | 0.388087 | 5.2:+72260431 | MS.gene98527:CDS |
| AGGTCCCCAGCTGTTGTAAT+TGG | 0.399227 | 5.2:+72260688 | MS.gene98527:intron |
| GAAGGGCCACATCTTAGCTT+TGG | 0.407213 | 5.2:+72261171 | MS.gene98527:CDS |
| GAGGAAGCAAACCAGTTTCT+GGG | 0.413200 | 5.2:+72259898 | MS.gene98527:CDS |
| GAAGGAACATACCCAGAAAC+TGG | 0.418162 | 5.2:-72259909 | None:intergenic |
| AGGTAGCCAATTACAACAGC+TGG | 0.425174 | 5.2:-72260694 | None:intergenic |
| TCGGTAACATTAGGATTAGA+TGG | 0.430015 | 5.2:-72261348 | None:intergenic |
| AGATCCATCCATCTGAATAT+CGG | 0.440613 | 5.2:-72261367 | None:intergenic |
| ATCTGAATATCGGTAACATT+AGG | 0.448518 | 5.2:-72261357 | None:intergenic |
| TCCATCCTCTAGACTTCATC+AGG | 0.453955 | 5.2:-72260714 | None:intergenic |
| GTTCTGGTTCATTGCATGTC+AGG | 0.454547 | 5.2:+72260447 | MS.gene98527:CDS |
| ACCAATTTCACATTCGGAGC+CGG | 0.454900 | 5.2:+72261288 | MS.gene98527:CDS |
| GTCATCTGGGAGGCAGTGAT+AGG | 0.465660 | 5.2:-72259860 | None:intergenic |
| ATAGCTCCACTTCCTGCCTT+CGG | 0.468593 | 5.2:+72261213 | MS.gene98527:CDS |
| GCTCCGACCAATTTCACATT+CGG | 0.479664 | 5.2:+72261282 | MS.gene98527:CDS |
| CTAAGATGTGGCCCTTCTGC+AGG | 0.480040 | 5.2:-72261165 | None:intergenic |
| GGTGAAGTGTGTGGGATTTG+TGG | 0.481060 | 5.2:+72258028 | MS.gene98527:CDS |
| CGTACTCCTGTAGTTGCTGG+TGG | 0.482249 | 5.2:-72261086 | None:intergenic |
| GTGCAGCCGAAGGCAGGAAG+TGG | 0.491492 | 5.2:-72261219 | None:intergenic |
| GTTGTAGTGCAGCCGAAGGC+AGG | 0.492876 | 5.2:-72261225 | None:intergenic |
| AGAGCAATGTGAGAGGGATA+AGG | 0.504289 | 5.2:+72260419 | MS.gene98527:intron |
| TCTGCAGGTGAGAAAACAAC+AGG | 0.504322 | 5.2:-72261150 | None:intergenic |
| GAAAACCCTTGTGGTGTATG+TGG | 0.522011 | 5.2:+72257983 | MS.gene98527:CDS |
| TGTGGTCATAGTGTTCCGAT+TGG | 0.524554 | 5.2:+72258046 | MS.gene98527:CDS |
| TTGCCGGAGTTTCTTTACTT+GGG | 0.537583 | 5.2:+72258115 | MS.gene98527:CDS |
| ACCTGATGAAGTCTAGAGGA+TGG | 0.538234 | 5.2:+72260713 | MS.gene98527:CDS |
| GGAGCCGGTCAGAATGTCAC+TGG | 0.543766 | 5.2:+72261303 | MS.gene98527:CDS |
| TCTGAACTTCTCAAAACTCA+AGG | 0.548827 | 5.2:+72258160 | MS.gene98527:CDS |
| GTTACCGATATTCAGATGGA+TGG | 0.550253 | 5.2:+72261363 | MS.gene98527:CDS |
| TGATAATGAGGAAAAGAGAG+AGG | 0.563217 | 5.2:+72257960 | None:intergenic |
| CACTATCACAAAGTTGAAGA+AGG | 0.565791 | 5.2:+72258007 | MS.gene98527:CDS |
| GAAGCTATGATAATGCTTCA+CGG | 0.565846 | 5.2:+72258137 | MS.gene98527:CDS |
| GGTGCTCGAGAGAAAATTGA+AGG | 0.568599 | 5.2:-72261249 | None:intergenic |
| GGTAGCCAATTACAACAGCT+GGG | 0.568832 | 5.2:-72260693 | None:intergenic |
| AGGTGCCCACCAGCAACTAC+AGG | 0.571587 | 5.2:+72261080 | MS.gene98527:intron |
| GTACTCCTGTAGTTGCTGGT+GGG | 0.580399 | 5.2:-72261085 | None:intergenic |
| AGGAGTTGTAGTGCAGCCGA+AGG | 0.581121 | 5.2:-72261229 | None:intergenic |
| TAATGTTACCGATATTCAGA+TGG | 0.588439 | 5.2:+72261359 | MS.gene98527:CDS |
| ACAGAGTTATCAGTGGGTAA+AGG | 0.592297 | 5.2:+72260744 | MS.gene98527:CDS |
| CTTCCCAAGTAAAGAAACTC+CGG | 0.599722 | 5.2:-72258118 | None:intergenic |
| AACTCCGGCAAGATCACAGA+AGG | 0.607086 | 5.2:-72258103 | None:intergenic |
| GCTCCGAATGTGAAATTGGT+CGG | 0.607426 | 5.2:-72261285 | None:intergenic |
| ACTTCCAGTGACATTCTGAC+CGG | 0.612829 | 5.2:-72261307 | None:intergenic |
| GAAATTGGTCGGAGCTATGT+CGG | 0.613069 | 5.2:-72261274 | None:intergenic |
| CTGAACTTCTCAAAACTCAA+GGG | 0.613772 | 5.2:+72258161 | MS.gene98527:CDS |
| CCTTCAGACAATTCAACCGC+AGG | 0.617703 | 5.2:-72260775 | None:intergenic |
| GATAATGAGGAAAAGAGAGA+GGG | 0.619301 | 5.2:+72257961 | None:intergenic |
| TTGAAGAAGGTGAAGTGTGT+GGG | 0.624996 | 5.2:+72258020 | MS.gene98527:CDS |
| CCTGCGGTTGAATTGTCTGA+AGG | 0.633257 | 5.2:+72260775 | MS.gene98527:CDS |
| GGCTACCTGATGAAGTCTAG+AGG | 0.636062 | 5.2:+72260709 | MS.gene98527:CDS |
| ATTGCATGTCAGGAAAGAGT+AGG | 0.640347 | 5.2:+72260457 | MS.gene98527:CDS |
| GGGAAGCCAAAGCTAAGATG+TGG | 0.645326 | 5.2:-72261177 | None:intergenic |
| TCATAGTGTTCCGATTGGAT+CGG | 0.646922 | 5.2:+72258051 | MS.gene98527:CDS |
| TAGTGCCCACATACACCACA+AGG | 0.653583 | 5.2:-72257989 | None:intergenic |
| TTGGTCGGAGCTATGTCGGA+GGG | 0.664050 | 5.2:-72261270 | None:intergenic |
| GTTGAAGAAGGTGAAGTGTG+TGG | 0.668847 | 5.2:+72258019 | MS.gene98527:CDS |
| AAAACCCTTGTGGTGTATGT+GGG | 0.672215 | 5.2:+72257984 | MS.gene98527:CDS |
| GGTAAAGGAACGTAGGCCTG+CGG | 0.676491 | 5.2:+72260759 | MS.gene98527:CDS |
| GACTACCACAGAGTTATCAG+TGG | 0.687636 | 5.2:+72260737 | MS.gene98527:CDS |
| TTTACCCACTGATAACTCTG+TGG | 0.687728 | 5.2:-72260742 | None:intergenic |
| ATTGGTCGGAGCTATGTCGG+AGG | 0.691767 | 5.2:-72261271 | None:intergenic |
| ACTACCACAGAGTTATCAGT+GGG | 0.704787 | 5.2:+72260738 | MS.gene98527:CDS |
| ATCAGTGGGTAAAGGAACGT+AGG | 0.707939 | 5.2:+72260752 | MS.gene98527:CDS |
| GTAGCCAATTACAACAGCTG+GGG | 0.710480 | 5.2:-72260692 | None:intergenic |
| AGAGAGAGGGAAAACCCTTG+TGG | 0.721358 | 5.2:+72257974 | MS.gene98527:CDS |
| AGTGCCCACATACACCACAA+GGG | 0.774096 | 5.2:-72257988 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTTATCATGTTTAAT+AGG | - | chr5.2:72259989-72260008 | None:intergenic | 10.0% |
| !! | TGTTTAATAGGTATTTATAA+AGG | - | chr5.2:72259977-72259996 | None:intergenic | 15.0% |
| !!! | AATATTTTGTAGTGAATTTA+TGG | + | chr5.2:72258884-72258903 | MS.gene98527:intron | 15.0% |
| !!! | ATATTTTGTAGTGAATTTAT+GGG | + | chr5.2:72258885-72258904 | MS.gene98527:intron | 15.0% |
| !!! | ATGTTTTGTTATGAAAATAT+GGG | + | chr5.2:72258732-72258751 | MS.gene98527:intron | 15.0% |
| !!! | TTAAATTCTATAATGTGTTT+TGG | + | chr5.2:72259604-72259623 | MS.gene98527:intron | 15.0% |
| !! | AAATAGGGTTTGATTAAATT+TGG | + | chr5.2:72259110-72259129 | MS.gene98527:intron | 20.0% |
| !! | CTACATTAATAAAATATGGA+TGG | - | chr5.2:72261062-72261081 | None:intergenic | 20.0% |
| !! | CTTACAGTTATATCATATAT+TGG | - | chr5.2:72260495-72260514 | None:intergenic | 20.0% |
| !! | TATATTGAATTAGTTAGTGA+TGG | + | chr5.2:72260540-72260559 | MS.gene98527:intron | 20.0% |
| !! | TTGTACTAAATAGTATATTG+CGG | - | chr5.2:72259349-72259368 | None:intergenic | 20.0% |
| !! | TTTATGTTTCTTTGATTGAT+TGG | + | chr5.2:72258223-72258242 | MS.gene98527:intron | 20.0% |
| !!! | AAACTAATTTTTCTCACAAA+AGG | + | chr5.2:72259272-72259291 | MS.gene98527:intron | 20.0% |
| !!! | CATCCATATTTTATTAATGT+AGG | + | chr5.2:72261060-72261079 | MS.gene98527:intron | 20.0% |
| !!! | CTAAAACACACAAATTTTAA+CGG | - | chr5.2:72261009-72261028 | None:intergenic | 20.0% |
| !!! | GATGTTTTGTTATGAAAATA+TGG | + | chr5.2:72258731-72258750 | MS.gene98527:intron | 20.0% |
| !!! | TAAAACACACAAATTTTAAC+GGG | - | chr5.2:72261008-72261027 | None:intergenic | 20.0% |
| !!! | TGTGTATTGTTTTAGATTTA+GGG | + | chr5.2:72258383-72258402 | MS.gene98527:intron | 20.0% |
| !!! | TTAGATGGATTTGTATTAAA+AGG | - | chr5.2:72261336-72261355 | None:intergenic | 20.0% |
| !!! | TTGTGTATTGTTTTAGATTT+AGG | + | chr5.2:72258382-72258401 | MS.gene98527:intron | 20.0% |
| !!! | TTTTTGAGTGAAAAAAGAAA+TGG | + | chr5.2:72259492-72259511 | MS.gene98527:intron | 20.0% |
| ! | AACAAATTTGTGTCAATTAG+AGG | - | chr5.2:72259193-72259212 | None:intergenic | 25.0% |
| ! | AAGATCAATGCTATCAATTA+TGG | - | chr5.2:72260131-72260150 | None:intergenic | 25.0% |
| ! | AGTTTCTATAACATATAGAG+TGG | - | chr5.2:72259643-72259662 | None:intergenic | 25.0% |
| ! | ATATGATATAACTGTAAGCA+CGG | + | chr5.2:72260497-72260516 | MS.gene98527:intron | 25.0% |
| ! | ATTATGGATCATGGAAAATA+TGG | + | chr5.2:72258412-72258431 | MS.gene98527:intron | 25.0% |
| ! | GCACCTACATTAATAAAATA+TGG | - | chr5.2:72261066-72261085 | None:intergenic | 25.0% |
| ! | GGTTTGTAATAGAACATTAT+GGG | + | chr5.2:72258520-72258539 | MS.gene98527:intron | 25.0% |
| ! | GTTTGTAATAGAACATTATG+GGG | + | chr5.2:72258521-72258540 | MS.gene98527:intron | 25.0% |
| ! | TGTAAATAGAAGAAACATGT+TGG | - | chr5.2:72260357-72260376 | None:intergenic | 25.0% |
| ! | TTCAGATTGTGTTTATTCAA+TGG | + | chr5.2:72258676-72258695 | MS.gene98527:intron | 25.0% |
| ! | TTGTGGAATTTGAATGATAT+TGG | + | chr5.2:72259693-72259712 | MS.gene98527:intron | 25.0% |
| !! | AGTTGATTACAGATTTTTAC+TGG | + | chr5.2:72260863-72260882 | MS.gene98527:intron | 25.0% |
| !! | AGTTTTCTAAATCACAAACA+CGG | - | chr5.2:72260239-72260258 | None:intergenic | 25.0% |
| !! | ATGTTTTCAAATAGCAGTTA+TGG | - | chr5.2:72258466-72258485 | None:intergenic | 25.0% |
| !! | CTAATTGACACAAATTTGTT+CGG | + | chr5.2:72259193-72259212 | MS.gene98527:intron | 25.0% |
| !! | TGATTTTTACTACACACTTT+AGG | - | chr5.2:72260913-72260932 | None:intergenic | 25.0% |
| !! | TGGTTTGTAATAGAACATTA+TGG | + | chr5.2:72258519-72258538 | MS.gene98527:intron | 25.0% |
| !! | TTTGATCAAACTCTATTTTC+CGG | - | chr5.2:72259000-72259019 | None:intergenic | 25.0% |
| AAAAAAGCTATTTGGATCAG+TGG | + | chr5.2:72261110-72261129 | MS.gene98527:CDS | 30.0% | |
| AAAAAGCTATTTGGATCAGT+GGG | + | chr5.2:72261111-72261130 | MS.gene98527:CDS | 30.0% | |
| ACATCATCATCATCACAAAA+AGG | - | chr5.2:72258702-72258721 | None:intergenic | 30.0% | |
| AGATTTAGTATCGTGAATTG+TGG | + | chr5.2:72258816-72258835 | MS.gene98527:intron | 30.0% | |
| ATCTGAATATCGGTAACATT+AGG | - | chr5.2:72261360-72261379 | None:intergenic | 30.0% | |
| ATGCTATCAATTATGGATGA+CGG | - | chr5.2:72260124-72260143 | None:intergenic | 30.0% | |
| ATTAAATTGCGTGCGAAATA+GGG | + | chr5.2:72259095-72259114 | MS.gene98527:intron | 30.0% | |
| CATGTCTTGATCAATGTTAA+AGG | + | chr5.2:72259949-72259968 | MS.gene98527:intron | 30.0% | |
| GAATTTATGGGTTTCTTGAT+TGG | + | chr5.2:72258897-72258916 | MS.gene98527:intron | 30.0% | |
| GAGCTATATCATTTGTCTTT+GGG | - | chr5.2:72261200-72261219 | None:intergenic | 30.0% | |
| GAGTACGAAAAAAAGCTATT+TGG | + | chr5.2:72261102-72261121 | MS.gene98527:CDS | 30.0% | |
| GAGTTACATGTATATATCTC+TGG | + | chr5.2:72260664-72260683 | MS.gene98527:intron | 30.0% | |
| GATTTAGTATCGTGAATTGT+GGG | + | chr5.2:72258817-72258836 | MS.gene98527:intron | 30.0% | |
| GCAAAATAATAATGCAGAGT+TGG | - | chr5.2:72260399-72260418 | None:intergenic | 30.0% | |
| GTGTGTAGTAAAAATCATCA+AGG | + | chr5.2:72260916-72260935 | MS.gene98527:intron | 30.0% | |
| TAATGTTACCGATATTCAGA+TGG | + | chr5.2:72261359-72261378 | MS.gene98527:CDS | 30.0% | |
| TACATGTATATATCTCTGGT+AGG | + | chr5.2:72260668-72260687 | MS.gene98527:intron | 30.0% | |
| TATTAAATTGCGTGCGAAAT+AGG | + | chr5.2:72259094-72259113 | MS.gene98527:intron | 30.0% | |
| TATTCTCAATGTAAGGATGA+TGG | + | chr5.2:72258192-72258211 | MS.gene98527:intron | 30.0% | |
| TCCAAGGAACAAAAGAAATA+AGG | - | chr5.2:72259722-72259741 | None:intergenic | 30.0% | |
| TGACAAAAGTTTCCAATTTG+AGG | + | chr5.2:72259879-72259898 | MS.gene98527:CDS | 30.0% | |
| TTTATGCATTTGGATTGTTG+TGG | + | chr5.2:72258940-72258959 | MS.gene98527:intron | 30.0% | |
| TTTCACGTATTCTCAATGTA+AGG | + | chr5.2:72258185-72258204 | MS.gene98527:intron | 30.0% | |
| ! | AATTGGAAACTTTTGTCATC+TGG | - | chr5.2:72259877-72259896 | None:intergenic | 30.0% |
| ! | AGATTTAGGGTTGTCAATTA+TGG | + | chr5.2:72258396-72258415 | MS.gene98527:intron | 30.0% |
| ! | ATTGGAAACTTTTGTCATCT+GGG | - | chr5.2:72259876-72259895 | None:intergenic | 30.0% |
| ! | TTGATCAAACTCTATTTTCC+GGG | - | chr5.2:72258999-72259018 | None:intergenic | 30.0% |
| ! | TTTTAAATTCCGCTACACTA+AGG | + | chr5.2:72258599-72258618 | MS.gene98527:intron | 30.0% |
| !! | TGTAGAGATTTTGACAAGAA+GGG | - | chr5.2:72259828-72259847 | None:intergenic | 30.0% |
| !! | TTATTTCTTTTGTTCCTTGG+AGG | + | chr5.2:72259721-72259740 | MS.gene98527:intron | 30.0% |
| !! | TTGTAGAGATTTTGACAAGA+AGG | - | chr5.2:72259829-72259848 | None:intergenic | 30.0% |
| !!! | GAAAATATGGGTGTTTTGAT+TGG | + | chr5.2:72258744-72258763 | MS.gene98527:intron | 30.0% |
| !!! | GTAAATTTTTAGCGAGAAGA+AGG | - | chr5.2:72259930-72259949 | None:intergenic | 30.0% |
| !!! | GTGTTTTGATTGGTTTAATG+TGG | + | chr5.2:72258754-72258773 | MS.gene98527:intron | 30.0% |
| !!! | TTCTATAATGTGTTTTGGTG+TGG | + | chr5.2:72259609-72259628 | MS.gene98527:intron | 30.0% |
| AAATAGCAGTTATGGCATTG+TGG | - | chr5.2:72258458-72258477 | None:intergenic | 35.0% | |
| AATCAACTAACACCGAAATC+TGG | - | chr5.2:72260851-72260870 | None:intergenic | 35.0% | |
| AGATCCATCCATCTGAATAT+CGG | - | chr5.2:72261370-72261389 | None:intergenic | 35.0% | |
| ATATAATCAACCCCACTTTG+TGG | + | chr5.2:72258555-72258574 | MS.gene98527:intron | 35.0% | |
| ATCAAACCCTTTCAACAACT+AGG | - | chr5.2:72260889-72260908 | None:intergenic | 35.0% | |
| CACTATCACAAAGTTGAAGA+AGG | + | chr5.2:72258007-72258026 | MS.gene98527:CDS | 35.0% | |
| CTGAACTTCTCAAAACTCAA+GGG | + | chr5.2:72258161-72258180 | MS.gene98527:CDS | 35.0% | |
| GAGGTTTGATATGATCAATG+TGG | - | chr5.2:72259174-72259193 | None:intergenic | 35.0% | |
| GCTCAACATATTGTTCTTTG+TGG | + | chr5.2:72259676-72259695 | MS.gene98527:intron | 35.0% | |
| GGAGCTATATCATTTGTCTT+TGG | - | chr5.2:72261201-72261220 | None:intergenic | 35.0% | |
| TATAATCAACCCCACTTTGT+GGG | + | chr5.2:72258556-72258575 | MS.gene98527:intron | 35.0% | |
| TATGACAAAACCCACATTGT+TGG | - | chr5.2:72259227-72259246 | None:intergenic | 35.0% | |
| TATGTTGAGCTCTTCAAACA+CGG | - | chr5.2:72259666-72259685 | None:intergenic | 35.0% | |
| TCATATTCTCTCCTATGCTA+GGG | + | chr5.2:72259242-72259261 | MS.gene98527:intron | 35.0% | |
| TCGCAGATCACAAAAAATAG+CGG | - | chr5.2:72259435-72259454 | None:intergenic | 35.0% | |
| TCGGTAACATTAGGATTAGA+TGG | - | chr5.2:72261351-72261370 | None:intergenic | 35.0% | |
| TCTGAACTTCTCAAAACTCA+AGG | + | chr5.2:72258160-72258179 | MS.gene98527:CDS | 35.0% | |
| TCTGTTTGTAGTGTTTGTCT+GGG | + | chr5.2:72259531-72259550 | MS.gene98527:intron | 35.0% | |
| TGACACCAGTCTTACAAATT+GGG | + | chr5.2:72260596-72260615 | MS.gene98527:intron | 35.0% | |
| TGAGATTGCGTTTATGCATT+TGG | + | chr5.2:72258930-72258949 | MS.gene98527:intron | 35.0% | |
| TGATCAATGTGGTCAAATAG+CGG | - | chr5.2:72259163-72259182 | None:intergenic | 35.0% | |
| TGTGATTGTGTTTGTGCATT+TGG | + | chr5.2:72258355-72258374 | MS.gene98527:intron | 35.0% | |
| TTCTGTTTGTAGTGTTTGTC+TGG | + | chr5.2:72259530-72259549 | MS.gene98527:intron | 35.0% | |
| TTGACACCAGTCTTACAAAT+TGG | + | chr5.2:72260595-72260614 | MS.gene98527:intron | 35.0% | |
| TTTCGCGACATAATTAGTTG+TGG | + | chr5.2:72258499-72258518 | MS.gene98527:intron | 35.0% | |
| ! | ACAAAGTGGGGTTGATTATA+TGG | - | chr5.2:72258556-72258575 | None:intergenic | 35.0% |
| ! | GAAATCATGTGTGTGTTGAT+TGG | + | chr5.2:72258322-72258341 | MS.gene98527:intron | 35.0% |
| ! | GAAGCTATGATAATGCTTCA+CGG | + | chr5.2:72258137-72258156 | MS.gene98527:CDS | 35.0% |
| ! | TATGGATGGATTCAGAAAGA+TGG | - | chr5.2:72261048-72261067 | None:intergenic | 35.0% |
| ! | TTAAACTCTATTTTCCGCGA+TGG | - | chr5.2:72259051-72259070 | None:intergenic | 35.0% |
| !! | GTGTGTTGATTGGTTTAATG+TGG | + | chr5.2:72258332-72258351 | MS.gene98527:intron | 35.0% |
| !! | TTTGATTGGTTTAATGTGGC+AGG | + | chr5.2:72258758-72258777 | MS.gene98527:intron | 35.0% |
| !!! | ACATTGTTTTGGCAGATTTC+AGG | + | chr5.2:72260095-72260114 | MS.gene98527:intron | 35.0% |
| !!! | CACACAAATTTTAACGGGTT+TGG | - | chr5.2:72261003-72261022 | None:intergenic | 35.0% |
| !!! | CACTAAGGAGTGTTTTGTTT+TGG | + | chr5.2:72258614-72258633 | MS.gene98527:intron | 35.0% |
| !!! | GCCTTATTTCTTTTGTTCCT+TGG | + | chr5.2:72259718-72259737 | MS.gene98527:intron | 35.0% |
| AAAACCCTTGTGGTGTATGT+GGG | + | chr5.2:72257984-72258003 | MS.gene98527:CDS | 40.0% | |
| ACAGAGTTATCAGTGGGTAA+AGG | + | chr5.2:72260744-72260763 | MS.gene98527:CDS | 40.0% | |
| ACTACCACAGAGTTATCAGT+GGG | + | chr5.2:72260738-72260757 | MS.gene98527:CDS | 40.0% | |
| AGATTTAGTGTTGTCAACCG+TGG | + | chr5.2:72258971-72258990 | MS.gene98527:intron | 40.0% | |
| AGTCAGTGAAAGAACAGTGT+AGG | - | chr5.2:72260274-72260293 | None:intergenic | 40.0% | |
| ATTGCATGTCAGGAAAGAGT+AGG | + | chr5.2:72260457-72260476 | MS.gene98527:CDS | 40.0% | |
| ATTGTGGGTCGTGGAAAATA+TGG | + | chr5.2:72258832-72258851 | MS.gene98527:intron | 40.0% | |
| CAAAACACTCCTTAGTGTAG+CGG | - | chr5.2:72258611-72258630 | None:intergenic | 40.0% | |
| CAAGTAAACTCGCCAGATTT+CGG | + | chr5.2:72260836-72260855 | MS.gene98527:intron | 40.0% | |
| CTGTTTGTAGTGTTTGTCTG+GGG | + | chr5.2:72259532-72259551 | MS.gene98527:intron | 40.0% | |
| CTTCCCAAGTAAAGAAACTC+CGG | - | chr5.2:72258121-72258140 | None:intergenic | 40.0% | |
| GATCAATGTGGTCAAATAGC+GGG | - | chr5.2:72259162-72259181 | None:intergenic | 40.0% | |
| GGGTTGTCAATTATGGATCA+TGG | + | chr5.2:72258403-72258422 | MS.gene98527:intron | 40.0% | |
| GTCATATTCTCTCCTATGCT+AGG | + | chr5.2:72259241-72259260 | MS.gene98527:intron | 40.0% | |
| GTTACCGATATTCAGATGGA+TGG | + | chr5.2:72261363-72261382 | MS.gene98527:CDS | 40.0% | |
| GTTTAACAGATCCCTAGCAT+AGG | - | chr5.2:72259256-72259275 | None:intergenic | 40.0% | |
| TCATAGTGTTCCGATTGGAT+CGG | + | chr5.2:72258051-72258070 | MS.gene98527:CDS | 40.0% | |
| TCTTACAAATTGGGATGCAG+TGG | + | chr5.2:72260605-72260624 | MS.gene98527:intron | 40.0% | |
| TGCATCCCAATTTGTAAGAC+TGG | - | chr5.2:72260604-72260623 | None:intergenic | 40.0% | |
| TGCCAAAACAATGTCTCGTA+TGG | - | chr5.2:72260089-72260108 | None:intergenic | 40.0% | |
| TGTTTGTAGTGTTTGTCTGG+GGG | + | chr5.2:72259533-72259552 | MS.gene98527:intron | 40.0% | |
| TTGAAGAAGGTGAAGTGTGT+GGG | + | chr5.2:72258020-72258039 | MS.gene98527:CDS | 40.0% | |
| TTGCCGGAGTTTCTTTACTT+GGG | + | chr5.2:72258115-72258134 | MS.gene98527:CDS | 40.0% | |
| TTTACCCACTGATAACTCTG+TGG | - | chr5.2:72260745-72260764 | None:intergenic | 40.0% | |
| ! | ACACAAATTTGTTCGGAGTG+AGG | + | chr5.2:72259200-72259219 | MS.gene98527:intron | 40.0% |
| ! | AGCCATACGAGACATTGTTT+TGG | + | chr5.2:72260084-72260103 | MS.gene98527:intron | 40.0% |
| ! | ATTTTGCAGAGCAATGTGAG+AGG | + | chr5.2:72260412-72260431 | MS.gene98527:intron | 40.0% |
| ! | GAAGTTTTCTCCGATCCAAT+CGG | - | chr5.2:72258064-72258083 | None:intergenic | 40.0% |
| ! | TACTGGCCTAGTTGTTGAAA+GGG | + | chr5.2:72260880-72260899 | MS.gene98527:intron | 40.0% |
| ! | TTACTGGCCTAGTTGTTGAA+AGG | + | chr5.2:72260879-72260898 | MS.gene98527:intron | 40.0% |
| ! | TTGTTTTCTCACCTGCAGAA+GGG | + | chr5.2:72261154-72261173 | MS.gene98527:CDS | 40.0% |
| ! | TTTTCCTTCTGTGATCTTGC+CGG | + | chr5.2:72258099-72258118 | MS.gene98527:CDS | 40.0% |
| ! | TTTTGCAGAGCAATGTGAGA+GGG | + | chr5.2:72260413-72260432 | MS.gene98527:intron | 40.0% |
| !! | ACTGGTTTGCTTCCTCAAAT+TGG | - | chr5.2:72259894-72259913 | None:intergenic | 40.0% |
| !! | GTTTCTTGATTGGTCTAGTG+TGG | + | chr5.2:72258907-72258926 | MS.gene98527:intron | 40.0% |
| !!! | GAAGAGTTATTTTGGATGGG+TGG | + | chr5.2:72259555-72259574 | MS.gene98527:intron | 40.0% |
| !!! | GGGGAAGAGTTATTTTGGAT+GGG | + | chr5.2:72259552-72259571 | MS.gene98527:intron | 40.0% |
| ACCAATTTCACATTCGGAGC+CGG | + | chr5.2:72261288-72261307 | MS.gene98527:CDS | 45.0% | |
| ACCTGATGAAGTCTAGAGGA+TGG | + | chr5.2:72260713-72260732 | MS.gene98527:CDS | 45.0% | |
| ACTTCCAGTGACATTCTGAC+CGG | - | chr5.2:72261310-72261329 | None:intergenic | 45.0% | |
| AGAGCAATGTGAGAGGGATA+AGG | + | chr5.2:72260419-72260438 | MS.gene98527:intron | 45.0% | |
| AGGTAGCCAATTACAACAGC+TGG | - | chr5.2:72260697-72260716 | None:intergenic | 45.0% | |
| ATCAGTGGGTAAAGGAACGT+AGG | + | chr5.2:72260752-72260771 | MS.gene98527:CDS | 45.0% | |
| ATTGACAACACTCAAGTGGC+TGG | + | chr5.2:72259454-72259473 | MS.gene98527:intron | 45.0% | |
| CTTGCCGGAGTTTCTTTACT+TGG | + | chr5.2:72258114-72258133 | MS.gene98527:CDS | 45.0% | |
| GAAAACCCTTGTGGTGTATG+TGG | + | chr5.2:72257983-72258002 | MS.gene98527:CDS | 45.0% | |
| GAAATTGGTCGGAGCTATGT+CGG | - | chr5.2:72261277-72261296 | None:intergenic | 45.0% | |
| GAAGGAACATACCCAGAAAC+TGG | - | chr5.2:72259912-72259931 | None:intergenic | 45.0% | |
| GACTACCACAGAGTTATCAG+TGG | + | chr5.2:72260737-72260756 | MS.gene98527:CDS | 45.0% | |
| GAGGAAGCAAACCAGTTTCT+GGG | + | chr5.2:72259898-72259917 | MS.gene98527:CDS | 45.0% | |
| GATTCCAAGTACAACCTCCA+AGG | - | chr5.2:72259738-72259757 | None:intergenic | 45.0% | |
| GCTCCGAATGTGAAATTGGT+CGG | - | chr5.2:72261288-72261307 | None:intergenic | 45.0% | |
| GCTCCGACCAATTTCACATT+CGG | + | chr5.2:72261282-72261301 | MS.gene98527:CDS | 45.0% | |
| GGTAGCCAATTACAACAGCT+GGG | - | chr5.2:72260696-72260715 | None:intergenic | 45.0% | |
| GGTGCTCGAGAGAAAATTGA+AGG | - | chr5.2:72261252-72261271 | None:intergenic | 45.0% | |
| GTAGCCAATTACAACAGCTG+GGG | - | chr5.2:72260695-72260714 | None:intergenic | 45.0% | |
| GTTGAAGAAGGTGAAGTGTG+TGG | + | chr5.2:72258019-72258038 | MS.gene98527:CDS | 45.0% | |
| TCCATCCTCTAGACTTCATC+AGG | - | chr5.2:72260717-72260736 | None:intergenic | 45.0% | |
| TCTGCAGGTGAGAAAACAAC+AGG | - | chr5.2:72261153-72261172 | None:intergenic | 45.0% | |
| TGAGGAAGCAAACCAGTTTC+TGG | + | chr5.2:72259897-72259916 | MS.gene98527:CDS | 45.0% | |
| TGCGATTGACAACACTCAAG+TGG | + | chr5.2:72259450-72259469 | MS.gene98527:intron | 45.0% | |
| TGGGATGCAGTGGCAATATT+AGG | + | chr5.2:72260615-72260634 | MS.gene98527:intron | 45.0% | |
| TGTGGTCATAGTGTTCCGAT+TGG | + | chr5.2:72258046-72258065 | MS.gene98527:CDS | 45.0% | |
| TGTTCCTTGGAGGTTGTACT+TGG | + | chr5.2:72259731-72259750 | MS.gene98527:intron | 45.0% | |
| TTTCGTACTCCTGTAGTTGC+TGG | - | chr5.2:72261092-72261111 | None:intergenic | 45.0% | |
| ! | AAGCCTTATCCCACAAAGTG+GGG | - | chr5.2:72258568-72258587 | None:intergenic | 45.0% |
| ! | ACTCTATTTTCCGGGATCCA+CGG | - | chr5.2:72258991-72259010 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACAAAGT+GGG | - | chr5.2:72258569-72258588 | None:intergenic | 45.0% |
| ! | GGAAACTTTTGTCATCTGGG+AGG | - | chr5.2:72259873-72259892 | None:intergenic | 45.0% |
| ! | GTCTGGGGGAAGAGTTATTT+TGG | + | chr5.2:72259547-72259566 | MS.gene98527:intron | 45.0% |
| ! | GTTTGGCTCGTCTAAAGTGA+GGG | - | chr5.2:72260986-72261005 | None:intergenic | 45.0% |
| !! | GTTCTGGTTCATTGCATGTC+AGG | + | chr5.2:72260447-72260466 | MS.gene98527:CDS | 45.0% |
| !! | GTTGTTTTCTCACCTGCAGA+AGG | + | chr5.2:72261153-72261172 | MS.gene98527:CDS | 45.0% |
| !!! | GAGTTATTTTGGATGGGTGG+TGG | + | chr5.2:72259558-72259577 | MS.gene98527:intron | 45.0% |
| !!! | GGGGGAAGAGTTATTTTGGA+TGG | + | chr5.2:72259551-72259570 | MS.gene98527:intron | 45.0% |
| AACTCCGGCAAGATCACAGA+AGG | - | chr5.2:72258106-72258125 | None:intergenic | 50.0% | |
| AAGGGACAGTCTGCACAAAC+AGG | - | chr5.2:72259810-72259829 | None:intergenic | 50.0% | |
| AGAGAGAGGGAAAACCCTTG+TGG | + | chr5.2:72257974-72257993 | MS.gene98527:CDS | 50.0% | |
| AGGTCCCCAGCTGTTGTAAT+TGG | + | chr5.2:72260688-72260707 | MS.gene98527:intron | 50.0% | |
| AGTGCCCACATACACCACAA+GGG | - | chr5.2:72257991-72258010 | None:intergenic | 50.0% | |
| ATAGCTCCACTTCCTGCCTT+CGG | + | chr5.2:72261213-72261232 | MS.gene98527:CDS | 50.0% | |
| CAACCCCACTTTGTGGGATA+AGG | + | chr5.2:72258562-72258581 | MS.gene98527:intron | 50.0% | |
| CCACTTTGTGGGATAAGGCT+TGG | + | chr5.2:72258567-72258586 | MS.gene98527:intron | 50.0% | |
| CCTGCGGTTGAATTGTCTGA+AGG | + | chr5.2:72260775-72260794 | MS.gene98527:CDS | 50.0% | |
| CCTTCAGACAATTCAACCGC+AGG | - | chr5.2:72260778-72260797 | None:intergenic | 50.0% | |
| GAAGGGCCACATCTTAGCTT+TGG | + | chr5.2:72261171-72261190 | MS.gene98527:CDS | 50.0% | |
| GGAGTGAGGTCCAACAATGT+GGG | + | chr5.2:72259214-72259233 | MS.gene98527:intron | 50.0% | |
| GGCTACCTGATGAAGTCTAG+AGG | + | chr5.2:72260709-72260728 | MS.gene98527:CDS | 50.0% | |
| GGGAAGCCAAAGCTAAGATG+TGG | - | chr5.2:72261180-72261199 | None:intergenic | 50.0% | |
| GGTGAAGTGTGTGGGATTTG+TGG | + | chr5.2:72258028-72258047 | MS.gene98527:CDS | 50.0% | |
| GTACTCCTGTAGTTGCTGGT+GGG | - | chr5.2:72261088-72261107 | None:intergenic | 50.0% | |
| GTATCGTGAATTGTGGGTCG+TGG | + | chr5.2:72258823-72258842 | MS.gene98527:intron | 50.0% | |
| TAGTGCCCACATACACCACA+AGG | - | chr5.2:72257992-72258011 | None:intergenic | 50.0% | |
| ! | ACCGGCTCCGAATGTGAAAT+TGG | - | chr5.2:72261292-72261311 | None:intergenic | 50.0% |
| ! | CCAAGCCTTATCCCACAAAG+TGG | - | chr5.2:72258570-72258589 | None:intergenic | 50.0% |
| ! | GGTTTGGCTCGTCTAAAGTG+AGG | - | chr5.2:72260987-72261006 | None:intergenic | 50.0% |
| ! | GTGCTGTTAACAGTCCATCG+CGG | + | chr5.2:72259034-72259053 | MS.gene98527:intron | 50.0% |
| !! | TCAAGTGGCTGGACTGGTTT+AGG | + | chr5.2:72259465-72259484 | MS.gene98527:intron | 50.0% |
| AGGAGTTGTAGTGCAGCCGA+AGG | - | chr5.2:72261232-72261251 | None:intergenic | 55.0% | |
| ATTGGTCGGAGCTATGTCGG+AGG | - | chr5.2:72261274-72261293 | None:intergenic | 55.0% | |
| CAACACTCAAGTGGCTGGAC+TGG | + | chr5.2:72259459-72259478 | MS.gene98527:intron | 55.0% | |
| CGGAGTGAGGTCCAACAATG+TGG | + | chr5.2:72259213-72259232 | MS.gene98527:intron | 55.0% | |
| CGTACTCCTGTAGTTGCTGG+TGG | - | chr5.2:72261089-72261108 | None:intergenic | 55.0% | |
| CTAAGATGTGGCCCTTCTGC+AGG | - | chr5.2:72261168-72261187 | None:intergenic | 55.0% | |
| GGCAGGATTGCGTGTGCATT+TGG | + | chr5.2:72258775-72258794 | MS.gene98527:intron | 55.0% | |
| GGTAAAGGAACGTAGGCCTG+CGG | + | chr5.2:72260759-72260778 | MS.gene98527:CDS | 55.0% | |
| GTCATCTGGGAGGCAGTGAT+AGG | - | chr5.2:72259863-72259882 | None:intergenic | 55.0% | |
| GTGTTGTCAACCGTGGATCC+CGG | + | chr5.2:72258978-72258997 | MS.gene98527:intron | 55.0% | |
| TTGGTCGGAGCTATGTCGGA+GGG | - | chr5.2:72261273-72261292 | None:intergenic | 55.0% | |
| ! | GAGGGATAAGGAGCGTGTTC+TGG | + | chr5.2:72260431-72260450 | MS.gene98527:CDS | 55.0% |
| AGGTGCCCACCAGCAACTAC+AGG | + | chr5.2:72261080-72261099 | MS.gene98527:intron | 60.0% | |
| GGAGCCGGTCAGAATGTCAC+TGG | + | chr5.2:72261303-72261322 | MS.gene98527:CDS | 60.0% | |
| GTTGTAGTGCAGCCGAAGGC+AGG | - | chr5.2:72261228-72261247 | None:intergenic | 60.0% | |
| GTGCAGCCGAAGGCAGGAAG+TGG | - | chr5.2:72261222-72261241 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 72257965 | 72261392 | 72257965 | ID=MS.gene98527 |
| chr5.2 | mRNA | 72257965 | 72261392 | 72257965 | ID=MS.gene98527.t1;Parent=MS.gene98527 |
| chr5.2 | exon | 72257965 | 72258201 | 72257965 | ID=MS.gene98527.t1.exon1;Parent=MS.gene98527.t1 |
| chr5.2 | CDS | 72257965 | 72258201 | 72257965 | ID=cds.MS.gene98527.t1;Parent=MS.gene98527.t1 |
| chr5.2 | exon | 72259820 | 72259919 | 72259820 | ID=MS.gene98527.t1.exon2;Parent=MS.gene98527.t1 |
| chr5.2 | CDS | 72259820 | 72259919 | 72259820 | ID=cds.MS.gene98527.t1;Parent=MS.gene98527.t1 |
| chr5.2 | exon | 72260421 | 72260478 | 72260421 | ID=MS.gene98527.t1.exon3;Parent=MS.gene98527.t1 |
| chr5.2 | CDS | 72260421 | 72260478 | 72260421 | ID=cds.MS.gene98527.t1;Parent=MS.gene98527.t1 |
| chr5.2 | exon | 72260690 | 72260796 | 72260690 | ID=MS.gene98527.t1.exon4;Parent=MS.gene98527.t1 |
| chr5.2 | CDS | 72260690 | 72260796 | 72260690 | ID=cds.MS.gene98527.t1;Parent=MS.gene98527.t1 |
| chr5.2 | exon | 72261082 | 72261392 | 72261082 | ID=MS.gene98527.t1.exon5;Parent=MS.gene98527.t1 |
| chr5.2 | CDS | 72261082 | 72261392 | 72261082 | ID=cds.MS.gene98527.t1;Parent=MS.gene98527.t1 |
| Gene Sequence |
| Protein sequence |
