AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene05886


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05886.t1 MTR_8g102980 98.921 278 3 0 1 278 58 335 0.0 568
MS.gene05886.t1 MTR_8g102980 98.921 278 3 0 1 278 58 335 0.0 568
MS.gene05886.t1 MTR_6g087120 74.820 278 67 1 1 278 62 336 3.70e-162 455
MS.gene05886.t1 MTR_2g023500 72.059 272 72 1 11 278 4 275 2.48e-148 417
MS.gene05886.t1 MTR_2g023500 47.244 127 63 1 29 151 152 278 4.67e-31 117
MS.gene05886.t1 MTR_3g110185 74.157 267 69 0 12 278 543 809 5.81e-146 430
MS.gene05886.t1 MTR_3g110185 52.846 123 58 0 29 151 690 812 1.89e-34 132
MS.gene05886.t1 MTR_4g132270 69.318 264 77 1 19 278 6 269 3.01e-139 394
MS.gene05886.t1 MTR_4g132270 47.200 125 62 1 31 151 148 272 1.84e-31 119
MS.gene05886.t1 MTR_4g132270 67.391 276 86 1 7 278 17 292 5.09e-139 395
MS.gene05886.t1 MTR_4g132270 47.200 125 62 1 31 151 171 295 2.79e-31 119
MS.gene05886.t1 MTR_4g132260 68.821 263 78 1 19 277 6 268 1.13e-136 388
MS.gene05886.t1 MTR_4g132260 46.400 125 63 1 31 151 148 272 3.68e-30 115
MS.gene05886.t1 MTR_4g039890 74.043 235 56 1 44 278 7 236 8.25e-128 364
MS.gene05886.t1 MTR_4g039890 47.973 148 66 3 6 147 93 235 3.85e-34 125
MS.gene05886.t1 MTR_0430s0010 54.762 84 38 0 108 191 1 84 1.80e-23 92.0
MS.gene05886.t1 MTR_4g057685 33.775 151 69 6 29 152 29 175 8.21e-18 80.1
MS.gene05886.t1 MTR_4g057685 33.775 151 69 6 29 152 77 223 1.38e-17 80.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05886.t1 AT1G67280 86.667 270 36 0 9 278 69 338 1.12e-180 502
MS.gene05886.t1 AT1G67280 90.000 250 25 0 29 278 1 250 1.11e-171 476
MS.gene05886.t1 AT1G11840 70.438 274 77 1 9 278 37 310 2.28e-145 411
MS.gene05886.t1 AT1G11840 48.800 125 60 1 31 151 189 313 7.31e-29 112
MS.gene05886.t1 AT1G11840 71.111 270 74 1 13 278 2 271 4.17e-145 409
MS.gene05886.t1 AT1G11840 48.800 125 60 1 31 151 150 274 7.78e-29 112
MS.gene05886.t1 AT1G11840 71.111 270 74 1 13 278 2 271 4.17e-145 409
MS.gene05886.t1 AT1G11840 48.800 125 60 1 31 151 150 274 7.78e-29 112
MS.gene05886.t1 AT1G11840 71.111 270 74 1 13 278 2 271 4.17e-145 409
MS.gene05886.t1 AT1G11840 48.800 125 60 1 31 151 150 274 7.78e-29 112
MS.gene05886.t1 AT1G11840 71.111 270 74 1 13 278 2 271 4.17e-145 409
MS.gene05886.t1 AT1G11840 48.800 125 60 1 31 151 150 274 7.78e-29 112
MS.gene05886.t1 AT1G11840 71.493 221 63 0 13 233 2 222 2.15e-119 342
MS.gene05886.t1 AT1G11840 51.282 117 57 0 159 275 18 134 2.53e-35 127
MS.gene05886.t1 AT1G08110 30.405 148 76 4 29 151 28 173 5.46e-15 72.4
MS.gene05886.t1 AT1G08110 30.405 148 76 4 29 151 28 173 5.46e-15 72.4
MS.gene05886.t1 AT1G08110 30.405 148 76 4 29 151 28 173 5.46e-15 72.4
MS.gene05886.t1 AT1G08110 30.405 148 76 4 29 151 78 223 1.03e-14 72.4

Find 63 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCCTGCCATTTAGGCTTT+TGG 0.265110 4.4:-3318937 MS.gene05886:intron
CTGGAGTTGACTTACAATTA+TGG 0.281726 4.4:-3318624 MS.gene05886:CDS
TGGTTACAAATTTGAACTTT+TGG 0.294255 4.4:-3319123 MS.gene05886:CDS
GGAACTGCATTTGGCCATTT+CGG 0.315598 4.4:-3319477 MS.gene05886:CDS
TATGATATTGGAACTGCATT+TGG 0.333699 4.4:-3319486 MS.gene05886:CDS
GGAGTTGATAAATATGATAT+TGG 0.334496 4.4:-3319498 MS.gene05886:CDS
TCTCTGAAAGTGATGTCATC+TGG 0.362649 4.4:-3320523 None:intergenic
ATAACAAAATGTGAATCTTC+AGG 0.386635 4.4:+3320191 None:intergenic
GCATTGGTATATCTTTCTTC+CGG 0.396583 4.4:+3320230 None:intergenic
CCCACTTTACAGATTGCAAT+AGG 0.402860 4.4:-3318357 MS.gene05886:intron
GGAAATAGTACCTTGTTGTC+TGG 0.415086 4.4:+3318886 None:intergenic
GGAGTCACTGAATATGATAA+AGG 0.416787 4.4:-3318603 MS.gene05886:CDS
ATCAGAAAATGTACTGGAAT+GGG 0.426693 4.4:-3320470 MS.gene05886:CDS
TTGCCTCCTTTGACAGGACC+AGG 0.434438 4.4:+3319176 None:intergenic
ACCATAGCAATGCTTGGTTA+TGG 0.437587 4.4:-3318669 MS.gene05886:CDS
TATCCACGGGAAAGCTTACT+CGG 0.440866 4.4:-3318296 MS.gene05886:CDS
CGTGGATAGTTTAATCGCTT+CGG 0.444321 4.4:+3318311 None:intergenic
CGGGAACCTGGACCATTGCC+TGG 0.446245 4.4:-3318276 MS.gene05886:CDS
AGTTCAAATTTGTAACCATC+AGG 0.449931 4.4:+3319128 None:intergenic
GGAAAGCTTACTCGGGAACC+TGG 0.467387 4.4:-3318288 MS.gene05886:CDS
TGTTTATCGTGTTGGTGACT+TGG 0.472187 4.4:-3320416 MS.gene05886:CDS
CTCTGAAAGTGATGTCATCT+GGG 0.476068 4.4:-3320522 None:intergenic
GCTTAGAAAGCGCGACATAC+CGG 0.478155 4.4:-3320249 MS.gene05886:CDS
CTTCATGTTGTTTATCGTGT+TGG 0.480854 4.4:-3320424 MS.gene05886:CDS
CATCAGAAAATGTACTGGAA+TGG 0.481686 4.4:-3320471 MS.gene05886:CDS
TCTTCCATCCATCAGGATCC+AGG 0.482454 4.4:+3318229 None:intergenic
AGAAGATAAAACGACTGTTC+TGG 0.483579 4.4:-3318643 MS.gene05886:CDS
CATCAACAGCAATACCGAAA+TGG 0.487202 4.4:+3319463 None:intergenic
ATCACTTGGCACAATGGCTC+AGG 0.495878 4.4:+3319086 None:intergenic
TTGATACCAGGCAATGGTCC+AGG 0.512839 4.4:+3318270 None:intergenic
GTGGAACTAATAAGAGCTAA+AGG 0.527668 4.4:-3319218 MS.gene05886:CDS
CACCCACTCGAAGCATCACT+TGG 0.531180 4.4:+3319072 None:intergenic
TCCATATCCAAGAAAAGCAT+TGG 0.535638 4.4:+3320214 None:intergenic
TCTCATAAAATTCAATTGAA+CGG 0.539116 4.4:+3319042 None:intergenic
TAAAGGAAATGCTTATGCTC+AGG 0.546983 4.4:-3318586 MS.gene05886:intron
TGCTTCATCAGAAAATGTAC+TGG 0.554972 4.4:-3320476 MS.gene05886:CDS
CATACCGTCTTCCATCCATC+AGG 0.567411 4.4:+3318222 None:intergenic
AGAGAGCCTGGTCCTGTCAA+AGG 0.574783 4.4:-3319182 MS.gene05886:CDS
CGAAGCATCACTTGGCACAA+TGG 0.575077 4.4:+3319080 None:intergenic
GTATGGAGCTGCTTCGTACG+CGG 0.578040 4.4:-3318915 MS.gene05886:CDS
CATGCCTGGATCCTGATGGA+TGG 0.578165 4.4:-3318233 MS.gene05886:CDS
CAGTATACCATAGCAATGCT+TGG 0.579257 4.4:-3318675 MS.gene05886:CDS
ACCATAACCAAGCATTGCTA+TGG 0.580026 4.4:+3318668 None:intergenic
TGGCACAATGGCTCAGGAGT+GGG 0.585262 4.4:+3319092 None:intergenic
TTCCCGAGTAAGCTTTCCCG+TGG 0.591304 4.4:+3318293 None:intergenic
CCACATGCAAGAGGTTGTTG+AGG 0.599076 4.4:-3318100 MS.gene05886:CDS
CAGCTTCATTCCCAGACACT+CGG 0.599630 4.4:+3320271 None:intergenic
GCATTTGTTGAAGATCCTGA+TGG 0.602821 4.4:-3319143 MS.gene05886:CDS
ACTGCATGCCTGGATCCTGA+TGG 0.602947 4.4:-3318237 MS.gene05886:CDS
TTGGCACAATGGCTCAGGAG+TGG 0.612051 4.4:+3319091 None:intergenic
TTTGTGTTGATACCAGGCAA+TGG 0.616817 4.4:+3318264 None:intergenic
AACAGATCACCACATGCAAG+AGG 0.618031 4.4:-3318109 MS.gene05886:intron
GAAGCGATTAAACTATCCAC+GGG 0.618591 4.4:-3318309 MS.gene05886:CDS
TATGGAGCTGCTTCGTACGC+GGG 0.624392 4.4:-3318914 MS.gene05886:CDS
CGAAGCGATTAAACTATCCA+CGG 0.624980 4.4:-3318310 MS.gene05886:CDS
GGATCCTGATGGATGGAAGA+CGG 0.635393 4.4:-3318226 MS.gene05886:intron
GTGCCAAGTGATGCTTCGAG+TGG 0.647147 4.4:-3319075 MS.gene05886:CDS
GAGCCTGGTCCTGTCAAAGG+AGG 0.647264 4.4:-3319179 MS.gene05886:CDS
ATCCACGGGAAAGCTTACTC+GGG 0.647863 4.4:-3318295 MS.gene05886:CDS
GAACTAATAAGAGCTAAAGG+TGG 0.648075 4.4:-3319215 MS.gene05886:CDS
CCTCAACAACCTCTTGCATG+TGG 0.662096 4.4:+3318100 None:intergenic
TGCCAAGTGATGCTTCGAGT+GGG 0.680292 4.4:-3319074 MS.gene05886:CDS
GCGGGATAATCCAGACAACA+AGG 0.682899 4.4:-3318896 MS.gene05886:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCATATTCAATTTATTATTT+TGG - chr4.4:3318210-3318229 MS.gene05886:intron 10.0%
!! AAAACATTAAATCAATTACG+TGG - chr4.4:3319612-3319631 MS.gene05886:intron 20.0%
!! AATAATTCTAACATCTTAAG+AGG + chr4.4:3318962-3318981 None:intergenic 20.0%
!! ACTTAATTGTTTACTCAAAT+AGG + chr4.4:3318462-3318481 None:intergenic 20.0%
!! CATTTAACAATATCAGATTA+CGG - chr4.4:3319053-3319072 MS.gene05886:CDS 20.0%
!! TAAGCATTTCTATAGAAATA+AGG - chr4.4:3318435-3318454 MS.gene05886:intron 20.0%
!! TCTCATAAAATTCAATTGAA+CGG + chr4.4:3319533-3319552 None:intergenic 20.0%
!! TGAAGAACTATAAACTTAAT+TGG - chr4.4:3318869-3318888 MS.gene05886:intron 20.0%
!! TTATTAGATTACAAAAACAG+TGG - chr4.4:3319335-3319354 MS.gene05886:intron 20.0%
!!! CTTATTTTCATAAACTCTTT+AGG + chr4.4:3318579-3318598 None:intergenic 20.0%
!!! TTCAATTGAATTTTATGAGA+AGG - chr4.4:3319533-3319552 MS.gene05886:intron 20.0%
!!! TTCTGTTTTTGTCATTATTT+AGG - chr4.4:3319251-3319270 MS.gene05886:intron 20.0%
! AACTACGGAAATAAATATTC+GGG + chr4.4:3320146-3320165 None:intergenic 25.0%
! ATAACAAAATGTGAATCTTC+AGG + chr4.4:3318384-3318403 None:intergenic 25.0%
! ATACTAGTGATACTAAAGTT+TGG + chr4.4:3319146-3319165 None:intergenic 25.0%
! CAGTGAAAAATACATAAAGT+AGG + chr4.4:3319714-3319733 None:intergenic 25.0%
! GAAAAATACATAAAGTAGGT+GGG + chr4.4:3319710-3319729 None:intergenic 25.0%
! GAACTACGGAAATAAATATT+CGG + chr4.4:3320147-3320166 None:intergenic 25.0%
! GAATTTAGACTTTATGAAGT+AGG - chr4.4:3318984-3319003 MS.gene05886:intron 25.0%
! TAAACTTAATTGGATTGAGA+AGG - chr4.4:3318879-3318898 MS.gene05886:intron 25.0%
! TGAAAAATACATAAAGTAGG+TGG + chr4.4:3319711-3319730 None:intergenic 25.0%
!! AAATATCTTTTGCAAGTCTT+AGG - chr4.4:3319795-3319814 MS.gene05886:intron 25.0%
!! TGGTTACAAATTTGAACTTT+TGG - chr4.4:3319449-3319468 MS.gene05886:intron 25.0%
!!! AAATTTGAACTTTTGGAAAG+AGG - chr4.4:3319456-3319475 MS.gene05886:intron 25.0%
!!! ATTTAGGATTTTCTTTCCAT+TGG - chr4.4:3319267-3319286 MS.gene05886:intron 25.0%
!!! GGAGTTGATAAATATGATAT+TGG - chr4.4:3319074-3319093 MS.gene05886:CDS 25.0%
!!! GTATACCTGTTTTGAAATAT+TGG - chr4.4:3319766-3319785 MS.gene05886:intron 25.0%
AAAAGCCATAACATGAAAGA+AGG + chr4.4:3319872-3319891 None:intergenic 30.0%
AAGAAACCATCTTCAAATAG+AGG + chr4.4:3320174-3320193 None:intergenic 30.0%
ACTACGGAAATAAATATTCG+GGG + chr4.4:3320145-3320164 None:intergenic 30.0%
AGTTCAAATTTGTAACCATC+AGG + chr4.4:3319447-3319466 None:intergenic 30.0%
ATCAGAAAATGTACTGGAAT+GGG - chr4.4:3318102-3318121 MS.gene05886:CDS 30.0%
ATTCACTCAAACGTTTAACA+TGG - chr4.4:3320409-3320428 MS.gene05886:CDS 30.0%
CAAAAGAACACAAAAGCAAA+AGG + chr4.4:3319744-3319763 None:intergenic 30.0%
GTGTACCAATATTTCAAAAC+AGG + chr4.4:3319774-3319793 None:intergenic 30.0%
TATGATATTGGAACTGCATT+TGG - chr4.4:3319086-3319105 MS.gene05886:CDS 30.0%
TATTGAACTCACATACAGTA+AGG - chr4.4:3318401-3318420 MS.gene05886:intron 30.0%
TCAAACGTTTAACATGGAAA+GGG - chr4.4:3320415-3320434 MS.gene05886:CDS 30.0%
TCAAAGTTATATACCAAACC+TGG + chr4.4:3318724-3318743 None:intergenic 30.0%
TCAAATAAGTCAATCCAAAC+AGG - chr4.4:3318684-3318703 MS.gene05886:intron 30.0%
TTTAGCATTTAGTACCTGTT+TGG + chr4.4:3318701-3318720 None:intergenic 30.0%
! AGATATACCAATGCTTTTCT+TGG - chr4.4:3318351-3318370 MS.gene05886:intron 30.0%
! TTGAATTTTATGAGAAGGTG+AGG - chr4.4:3319538-3319557 MS.gene05886:intron 30.0%
!! GTAATTTTTGTGTTGATACC+AGG + chr4.4:3320317-3320336 None:intergenic 30.0%
AACATAAGCACTTGTGAGAA+TGG + chr4.4:3318653-3318672 None:intergenic 35.0%
ACCTATTGCAATCTGTAAAG+TGG + chr4.4:3320219-3320238 None:intergenic 35.0%
ACTAAATGCTAAACCAGGTT+TGG - chr4.4:3318708-3318727 MS.gene05886:intron 35.0%
AGAAGATAAAACGACTGTTC+TGG - chr4.4:3319929-3319948 MS.gene05886:intron 35.0%
CATCAGAAAATGTACTGGAA+TGG - chr4.4:3318101-3318120 MS.gene05886:CDS 35.0%
CCTATTGCAATCTGTAAAGT+GGG + chr4.4:3320218-3320237 None:intergenic 35.0%
CTATTGCAATCTGTAAAGTG+GGG + chr4.4:3320217-3320236 None:intergenic 35.0%
CTCAAACGTTTAACATGGAA+AGG - chr4.4:3320414-3320433 MS.gene05886:CDS 35.0%
GAACTAATAAGAGCTAAAGG+TGG - chr4.4:3319357-3319376 MS.gene05886:intron 35.0%
GGAGTCACTGAATATGATAA+AGG - chr4.4:3319969-3319988 MS.gene05886:intron 35.0%
GTGGAACTAATAAGAGCTAA+AGG - chr4.4:3319354-3319373 MS.gene05886:intron 35.0%
TAAAGGAAATGCTTATGCTC+AGG - chr4.4:3319986-3320005 MS.gene05886:intron 35.0%
TCAAAACCCATAGGTCAATT+TGG + chr4.4:3318926-3318945 None:intergenic 35.0%
TCAACATAGTCAAAACCCAT+AGG + chr4.4:3318935-3318954 None:intergenic 35.0%
TGCTTCATCAGAAAATGTAC+TGG - chr4.4:3318096-3318115 MS.gene05886:CDS 35.0%
TTCGATTGAATCTTGTGAAG+AGG - chr4.4:3320028-3320047 MS.gene05886:intron 35.0%
! ACCAATGCTTTTCTTGGATA+TGG - chr4.4:3318357-3318376 MS.gene05886:intron 35.0%
! AGATTTTATACCGAGTGTCT+GGG - chr4.4:3318291-3318310 MS.gene05886:CDS 35.0%
! CTGGAGTTGACTTACAATTA+TGG - chr4.4:3319948-3319967 MS.gene05886:intron 35.0%
! CTTCATGTTGTTTATCGTGT+TGG - chr4.4:3318148-3318167 MS.gene05886:intron 35.0%
! GCATTGGTATATCTTTCTTC+CGG + chr4.4:3318345-3318364 None:intergenic 35.0%
! TCCATATCCAAGAAAAGCAT+TGG + chr4.4:3318361-3318380 None:intergenic 35.0%
! TCTTTTGCCTTTTGACACTT+TGG - chr4.4:3319831-3319850 MS.gene05886:intron 35.0%
!! AGAACAGTCGTTTTATCTTC+TGG + chr4.4:3319930-3319949 None:intergenic 35.0%
ACATGAAAGAAGGTAGGCAA+AGG + chr4.4:3319862-3319881 None:intergenic 40.0%
ACCATAGCAATGCTTGGTTA+TGG - chr4.4:3319903-3319922 MS.gene05886:intron 40.0%
ACCATCTTCAAATAGAGGCA+AGG + chr4.4:3320169-3320188 None:intergenic 40.0%
ACCCATAGGTCAATTTGGAT+TGG + chr4.4:3318921-3318940 None:intergenic 40.0%
ACGTTTAACATGGAAAGGGA+AGG - chr4.4:3320419-3320438 MS.gene05886:CDS 40.0%
AGCCAATCCAAATTGACCTA+TGG - chr4.4:3318916-3318935 MS.gene05886:CDS 40.0%
ATACCAAAAGCCTAAATGGC+AGG + chr4.4:3319641-3319660 None:intergenic 40.0%
CAAATAGAGGCAAGGAACTA+CGG + chr4.4:3320161-3320180 None:intergenic 40.0%
CACAAAAATTACTGCATGCC+TGG - chr4.4:3320325-3320344 MS.gene05886:intron 40.0%
CAGCATCCATGTTTGTCAAA+AGG + chr4.4:3319293-3319312 None:intergenic 40.0%
CAGGTACTAAATGCTAAACC+AGG - chr4.4:3318703-3318722 MS.gene05886:intron 40.0%
CAGTATACCATAGCAATGCT+TGG - chr4.4:3319897-3319916 MS.gene05886:intron 40.0%
CATCAACAGCAATACCGAAA+TGG + chr4.4:3319112-3319131 None:intergenic 40.0%
CATGTTTGTCAAAAGGCCAA+TGG + chr4.4:3319286-3319305 None:intergenic 40.0%
CCCACTTTACAGATTGCAAT+AGG - chr4.4:3320215-3320234 MS.gene05886:CDS 40.0%
CGAAGCGATTAAACTATCCA+CGG - chr4.4:3320262-3320281 MS.gene05886:CDS 40.0%
CGTGGATAGTTTAATCGCTT+CGG + chr4.4:3320264-3320283 None:intergenic 40.0%
CTCCATACCAAAAGCCTAAA+TGG + chr4.4:3319645-3319664 None:intergenic 40.0%
GAAGCGATTAAACTATCCAC+GGG - chr4.4:3320263-3320282 MS.gene05886:CDS 40.0%
GCCAATCCAAATTGACCTAT+GGG - chr4.4:3318917-3318936 MS.gene05886:CDS 40.0%
GCCATAACATGAAAGAAGGT+AGG + chr4.4:3319868-3319887 None:intergenic 40.0%
GCCTACCTTCTTTCATGTTA+TGG - chr4.4:3319864-3319883 MS.gene05886:intron 40.0%
GGAAAAATAACTAGAGAGCC+TGG - chr4.4:3319378-3319397 MS.gene05886:intron 40.0%
TCCTTGCCTCTATTTGAAGA+TGG - chr4.4:3320165-3320184 MS.gene05886:intron 40.0%
TGTGTTCATTCCTGTTGAGT+TGG - chr4.4:3319194-3319213 MS.gene05886:CDS 40.0%
! ACCATAACCAAGCATTGCTA+TGG + chr4.4:3319907-3319926 None:intergenic 40.0%
! CAGATTTTATACCGAGTGTC+TGG - chr4.4:3318290-3318309 MS.gene05886:CDS 40.0%
! CTTTTGACAAACATGGATGC+TGG - chr4.4:3319291-3319310 MS.gene05886:intron 40.0%
! GCATTTGTTGAAGATCCTGA+TGG - chr4.4:3319429-3319448 MS.gene05886:intron 40.0%
! GGAAATAGTACCTTGTTGTC+TGG + chr4.4:3319689-3319708 None:intergenic 40.0%
! TGAAGAGGTTTTCATTGCTG+TGG - chr4.4:3320043-3320062 MS.gene05886:intron 40.0%
! TTTGTGTTGATACCAGGCAA+TGG + chr4.4:3320311-3320330 None:intergenic 40.0%
!! TGCCATTTAGGCTTTTGGTA+TGG - chr4.4:3319640-3319659 MS.gene05886:intron 40.0%
!! TGTTTATCGTGTTGGTGACT+TGG - chr4.4:3318156-3318175 MS.gene05886:intron 40.0%
!!! CATTGGCCTTTTGACAAACA+TGG - chr4.4:3319284-3319303 MS.gene05886:intron 40.0%
AACAGATCACCACATGCAAG+AGG - chr4.4:3320463-3320482 MS.gene05886:CDS 45.0%
AGCATGAGCTGACACAGAAT+AGG + chr4.4:3319570-3319589 None:intergenic 45.0%
AGGAATGAACACAGCATGAG+AGG + chr4.4:3319187-3319206 None:intergenic 45.0%
ATCCTCAATCTCACATGGTG+TGG - chr4.4:3319225-3319244 MS.gene05886:CDS 45.0%
CCATGTGAGATTGAGGATCA+AGG + chr4.4:3319223-3319242 None:intergenic 45.0%
CCTTGATCCTCAATCTCACA+TGG - chr4.4:3319220-3319239 MS.gene05886:CDS 45.0%
CTTGCATGTGGTGATCTGTT+AGG + chr4.4:3320463-3320482 None:intergenic 45.0%
GGAACTGCATTTGGCCATTT+CGG - chr4.4:3319095-3319114 MS.gene05886:CDS 45.0%
TATCCACGGGAAAGCTTACT+CGG - chr4.4:3320276-3320295 MS.gene05886:CDS 45.0%
! ACTGTTTTGCCTCCTTTGAC+AGG + chr4.4:3319405-3319424 None:intergenic 45.0%
! GGACATGCCAAAGTGTCAAA+AGG + chr4.4:3319841-3319860 None:intergenic 45.0%
!! GTTCATTCCTGTTGAGTTGG+TGG - chr4.4:3319197-3319216 MS.gene05886:CDS 45.0%
!! TTGCCTGCCATTTAGGCTTT+TGG - chr4.4:3319635-3319654 MS.gene05886:intron 45.0%
ATCAAGGCCACCAACTCAAC+AGG + chr4.4:3319207-3319226 None:intergenic 50.0%
ATCACTTGGCACAATGGCTC+AGG + chr4.4:3319489-3319508 None:intergenic 50.0%
ATCCACGGGAAAGCTTACTC+GGG - chr4.4:3320277-3320296 MS.gene05886:CDS 50.0%
CAGCTTCATTCCCAGACACT+CGG + chr4.4:3318304-3318323 None:intergenic 50.0%
CATACCGTCTTCCATCCATC+AGG + chr4.4:3320353-3320372 None:intergenic 50.0%
CCACATGCAAGAGGTTGTTG+AGG - chr4.4:3320472-3320491 MS.gene05886:CDS 50.0%
CCTCAACAACCTCTTGCATG+TGG + chr4.4:3320475-3320494 None:intergenic 50.0%
CTCAATCTCACATGGTGTGG+AGG - chr4.4:3319228-3319247 MS.gene05886:CDS 50.0%
CTCCACACCATGTGAGATTG+AGG + chr4.4:3319230-3319249 None:intergenic 50.0%
GCGGGATAATCCAGACAACA+AGG - chr4.4:3319676-3319695 MS.gene05886:intron 50.0%
GGAAAGGGAAGGCTTGTGAA+TGG - chr4.4:3320430-3320449 MS.gene05886:CDS 50.0%
TCTTCCATCCATCAGGATCC+AGG + chr4.4:3320346-3320365 None:intergenic 50.0%
TGCCAAGTGATGCTTCGAGT+GGG - chr4.4:3319498-3319517 MS.gene05886:CDS 50.0%
TTGATACCAGGCAATGGTCC+AGG + chr4.4:3320305-3320324 None:intergenic 50.0%
! CGAAGCATCACTTGGCACAA+TGG + chr4.4:3319495-3319514 None:intergenic 50.0%
! GCTTAGAAAGCGCGACATAC+CGG - chr4.4:3318323-3318342 MS.gene05886:CDS 50.0%
! GGATCCTGATGGATGGAAGA+CGG - chr4.4:3320346-3320365 MS.gene05886:intron 50.0%
! TACGTGGTTGCCTGCCATTT+AGG - chr4.4:3319628-3319647 MS.gene05886:intron 50.0%
ACTGCATGCCTGGATCCTGA+TGG - chr4.4:3320335-3320354 MS.gene05886:intron 55.0%
AGAGAGCCTGGTCCTGTCAA+AGG - chr4.4:3319390-3319409 MS.gene05886:intron 55.0%
CATGCCTGGATCCTGATGGA+TGG - chr4.4:3320339-3320358 MS.gene05886:intron 55.0%
GGAAAGCTTACTCGGGAACC+TGG - chr4.4:3320284-3320303 MS.gene05886:intron 55.0%
GTATGGAGCTGCTTCGTACG+CGG - chr4.4:3319657-3319676 MS.gene05886:intron 55.0%
GTGCCAAGTGATGCTTCGAG+TGG - chr4.4:3319497-3319516 MS.gene05886:CDS 55.0%
TATGGAGCTGCTTCGTACGC+GGG - chr4.4:3319658-3319677 MS.gene05886:intron 55.0%
TGGCACAATGGCTCAGGAGT+GGG + chr4.4:3319483-3319502 None:intergenic 55.0%
TTCCCGAGTAAGCTTTCCCG+TGG + chr4.4:3320282-3320301 None:intergenic 55.0%
TTGCCTCCTTTGACAGGACC+AGG + chr4.4:3319399-3319418 None:intergenic 55.0%
TTGGCACAATGGCTCAGGAG+TGG + chr4.4:3319484-3319503 None:intergenic 55.0%
! CACCCACTCGAAGCATCACT+TGG + chr4.4:3319503-3319522 None:intergenic 55.0%
GAGCCTGGTCCTGTCAAAGG+AGG - chr4.4:3319393-3319412 MS.gene05886:intron 60.0%
CGGGAACCTGGACCATTGCC+TGG - chr4.4:3320296-3320315 MS.gene05886:intron 65.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 3318061 3320533 3318061 ID=MS.gene05886
chr4.4 mRNA 3318061 3320533 3318061 ID=MS.gene05886.t1;Parent=MS.gene05886
chr4.4 exon 3320403 3320533 3320403 ID=MS.gene05886.t1.exon1;Parent=MS.gene05886.t1
chr4.4 CDS 3320403 3320533 3320403 ID=cds.MS.gene05886.t1;Parent=MS.gene05886.t1
chr4.4 exon 3320177 3320301 3320177 ID=MS.gene05886.t1.exon2;Parent=MS.gene05886.t1
chr4.4 CDS 3320177 3320301 3320177 ID=cds.MS.gene05886.t1;Parent=MS.gene05886.t1
chr4.4 exon 3319461 3319525 3319461 ID=MS.gene05886.t1.exon3;Parent=MS.gene05886.t1
chr4.4 CDS 3319461 3319525 3319461 ID=cds.MS.gene05886.t1;Parent=MS.gene05886.t1
chr4.4 exon 3319040 3319252 3319040 ID=MS.gene05886.t1.exon4;Parent=MS.gene05886.t1
chr4.4 CDS 3319040 3319252 3319040 ID=cds.MS.gene05886.t1;Parent=MS.gene05886.t1
chr4.4 exon 3318897 3318944 3318897 ID=MS.gene05886.t1.exon5;Parent=MS.gene05886.t1
chr4.4 CDS 3318897 3318944 3318897 ID=cds.MS.gene05886.t1;Parent=MS.gene05886.t1
chr4.4 exon 3318587 3318694 3318587 ID=MS.gene05886.t1.exon6;Parent=MS.gene05886.t1
chr4.4 CDS 3318587 3318694 3318587 ID=cds.MS.gene05886.t1;Parent=MS.gene05886.t1
chr4.4 exon 3318227 3318367 3318227 ID=MS.gene05886.t1.exon7;Parent=MS.gene05886.t1
chr4.4 CDS 3318227 3318367 3318227 ID=cds.MS.gene05886.t1;Parent=MS.gene05886.t1
chr4.4 exon 3318061 3318126 3318061 ID=MS.gene05886.t1.exon8;Parent=MS.gene05886.t1
chr4.4 CDS 3318061 3318126 3318061 ID=cds.MS.gene05886.t1;Parent=MS.gene05886.t1
Gene Sequence

>MS.gene05886

ATGTCATCTGGGAACGTGTCATCATCAGTCACTGCTGCTTCATCAGAAAATGTACTGGAATGGGTCAAACAAGATAAAAGAAGAATGCTTCATGTTGTTTATCGTGTTGGTGACTTGGATAGAACTATTAAGTAAATACTATAGTATTTTCATATTCAATTTATTATTTTGGAGTTCTAATTTAATCATCAATTTCTGCATATTTAGTTTACTATACTCTTTGTGATTTCAGATTTTATACCGAGTGTCTGGGAATGAAGCTGCTTAGAAAGCGCGACATACCGGAAGAAAGATATACCAATGCTTTTCTTGGATATGGACCTGAAGATTCACATTTTGTTATTGAACTCACATACAGTAAGGCTCGTTTTCAATAAGCATTTCTATAGAAATAAGGTCCTATTTGAGTAAACAATTAAGTTAAGTGCTTATGTATGATCTATTTTGATAAATAATAAAGATAAAATGAAGTTAAACAGTTTTCATATCAGTTATATCATGTTTTAATAAGCTGTCCTAAAGAGTTTATGAAAATAAGCTGAAAATAGCTAATGAACATGTCATAAGTTGTTTTCATAAGCTGTTACAACCATTCTCACAAGTGCTTATGTTAGTAGATAAGCTCAAATAAGTCAATCCAAACAGGTACTAAATGCTAAACCAGGTTTGGTATATAACTTTGAGTTCTTTAAACAATGACTTTTTGTATAAGTTCAAATTAGCTTTTGCATCTCAATATTTTCAATAGCTCTCTCGTCTAACTTCTTCATTAACATCTAGTATAAGCTTATAAATACTTTTTCTTTAATGAAGAACTATAAACTTAATTGGATTGAGAAGGTTCTATAAGTTAAAAGCCAATCCAAATTGACCTATGGGTTTTGACTATGTTGACATTCCTCTTAAGATGTTAGAATTATTATGAATTTAGACTTTATGAAGTAGGTTGTTCATGCTTGTGTAAAGAAAGCTTCTAATTAGTATTTATTTTTCATTTAACAATATCAGATTACGGAGTTGATAAATATGATATTGGAACTGCATTTGGCCATTTCGGTATTGCTGTTGATGATGTAAGTTTTCCAAACTTTAGTATCACTAGTATCAGTCATTAACATCTTGACCTCTCATGCTGTGTTCATTCCTGTTGAGTTGGTGGCCTTGATCCTCAATCTCACATGGTGTGGAGGTTCTGTTTTTGTCATTATTTAGGATTTTCTTTCCATTGGCCTTTTGACAAACATGGATGCTGGAATTTCTGTCTATATGATTCTTTATTAGATTACAAAAACAGTGGAACTAATAAGAGCTAAAGGTGGAAAAATAACTAGAGAGCCTGGTCCTGTCAAAGGAGGCAAAACAGTAATCGCATTTGTTGAAGATCCTGATGGTTACAAATTTGAACTTTTGGAAAGAGGTCCCACTCCTGAGCCATTGTGCCAAGTGATGCTTCGAGTGGGTGATCTTAACCGTTCAATTGAATTTTATGAGAAGGTGAGGATCAATCCTATTCTGTGTCAGCTCATGCTTCAGAGTTTTTATTTTATGCACAAAACATTAAATCAATTACGTGGTTGCCTGCCATTTAGGCTTTTGGTATGGAGCTGCTTCGTACGCGGGATAATCCAGACAACAAGGTACTATTTCCCACCTACTTTATGTATTTTTCACTGTCATCTGCCTTTTGCTTTTGTGTTCTTTTGATGTATACCTGTTTTGAAATATTGGTACACTAAATATCTTTTGCAAGTCTTAGGTATCTATTGCTTATCTTTTGCCTTTTGACACTTTGGCATGTCCTTTGCCTACCTTCTTTCATGTTATGGCTTTTTTGTGCAGTATACCATAGCAATGCTTGGTTATGGTCCAGAAGATAAAACGACTGTTCTGGAGTTGACTTACAATTATGGAGTCACTGAATATGATAAAGGAAATGCTTATGCTCAGGTAAGCAGAAGTTCTTCTTTTTCGATTGAATCTTGTGAAGAGGTTTTCATTGCTGTGGTTATGATCTGAACTTTTTTTTGTGCTAATAGAAACTACTGCAGATTTCATTTTTAAAATAATTTAAATGCTTTTTACCCCGAATATTTATTTCCGTAGTTCCTTGCCTCTATTTGAAGATGGTTTCTTTTATCAGTTATATTTCATTTCCCCACTTTACAGATTGCAATAGGTACAGATGATGTGTACAAAACTGCCGAAGCGATTAAACTATCCACGGGAAAGCTTACTCGGGAACCTGGACCATTGCCTGGTATCAACACAAAAATTACTGCATGCCTGGATCCTGATGGATGGAAGACGGTATGTCTCTTTGAACTTGTGATTTGATTTTTTAATGAGCAATTCACTCAAACGTTTAACATGGAAAGGGAAGGCTTGTGAATGGTTTTGTACCTAACAGATCACCACATGCAAGAGGTTGTTGAGGTTGAAGCTTATAATGCATACTCATTTTCCTGTATGTTGA

Protein sequence

>MS.gene05886.t1

MSSGNVSSSVTAASSENVLEWVKQDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEERYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTAFGHFGIAVDDITKTVELIRAKGGKITREPGPVKGGKTVIAFVEDPDGYKFELLERGPTPEPLCQVMLRVGDLNRSIEFYEKAFGMELLRTRDNPDNKYTIAMLGYGPEDKTTVLELTYNYGVTEYDKGNAYAQIAIGTDDVYKTAEAIKLSTGKLTREPGPLPGINTKITACLDPDGWKTITTCKRLLRLKLIMHTHFPVC