Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98556.t1 | XP_003616876.2 | 99.6 | 677 | 3 | 0 | 1 | 677 | 1 | 677 | 0.00E+00 | 1360.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98556.t1 | P93471 | 93.8 | 677 | 37 | 1 | 1 | 677 | 1 | 672 | 0.0e+00 | 1273.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98556.t1 | G7KH91 | 99.6 | 677 | 3 | 0 | 1 | 677 | 1 | 677 | 0.0e+00 | 1360.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049369 | MS.gene98556 | 0.802467 | 5.53E-49 | -1.69E-46 |
MS.gene057668 | MS.gene98556 | 0.836677 | 8.13E-57 | -1.69E-46 |
MS.gene058075 | MS.gene98556 | 0.81454 | 1.46E-51 | -1.69E-46 |
MS.gene059674 | MS.gene98556 | 0.82196 | 3.06E-53 | -1.69E-46 |
MS.gene059807 | MS.gene98556 | 0.814074 | 1.85E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98556.t1 | MTR_5g085250 | 99.557 | 677 | 3 | 0 | 1 | 677 | 1 | 677 | 0.0 | 1414 |
MS.gene98556.t1 | MTR_5g085250 | 99.817 | 545 | 1 | 0 | 133 | 677 | 29 | 573 | 0.0 | 1134 |
MS.gene98556.t1 | MTR_5g085250 | 99.815 | 540 | 1 | 0 | 138 | 677 | 1 | 540 | 0.0 | 1123 |
MS.gene98556.t1 | MTR_2g085210 | 49.138 | 348 | 170 | 2 | 335 | 675 | 527 | 874 | 6.87e-114 | 363 |
MS.gene98556.t1 | MTR_5g009530 | 47.688 | 346 | 169 | 3 | 341 | 675 | 689 | 1033 | 2.51e-106 | 346 |
MS.gene98556.t1 | MTR_8g027985 | 45.170 | 352 | 180 | 3 | 336 | 675 | 613 | 963 | 3.66e-102 | 334 |
MS.gene98556.t1 | MTR_5g009530 | 48.951 | 286 | 138 | 1 | 341 | 618 | 689 | 974 | 1.94e-90 | 303 |
MS.gene98556.t1 | MTR_2g085210 | 50.307 | 163 | 81 | 0 | 335 | 497 | 527 | 689 | 2.28e-48 | 181 |
MS.gene98556.t1 | MTR_2g085210 | 50.307 | 163 | 81 | 0 | 335 | 497 | 527 | 689 | 2.30e-48 | 181 |
MS.gene98556.t1 | MTR_5g009530 | 46.281 | 121 | 64 | 1 | 341 | 461 | 689 | 808 | 9.06e-29 | 123 |
MS.gene98556.t1 | MTR_5g016370 | 21.277 | 329 | 221 | 10 | 356 | 673 | 290 | 591 | 1.10e-12 | 71.6 |
MS.gene98556.t1 | MTR_1g072140 | 30.058 | 173 | 111 | 6 | 427 | 593 | 116 | 284 | 1.39e-12 | 69.7 |
MS.gene98556.t1 | MTR_6g004040 | 26.738 | 187 | 129 | 6 | 452 | 634 | 1 | 183 | 1.68e-12 | 71.2 |
MS.gene98556.t1 | MTR_7g086360 | 26.042 | 192 | 131 | 6 | 437 | 619 | 112 | 301 | 1.32e-11 | 67.0 |
MS.gene98556.t1 | MTR_4g073080 | 29.268 | 164 | 105 | 4 | 428 | 581 | 168 | 330 | 1.66e-11 | 67.0 |
MS.gene98556.t1 | MTR_4g095058 | 22.086 | 326 | 209 | 11 | 364 | 673 | 278 | 574 | 7.88e-11 | 65.5 |
MS.gene98556.t1 | MTR_4g095058 | 22.086 | 326 | 209 | 11 | 364 | 673 | 276 | 572 | 8.95e-11 | 65.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98556.t1 | AT2G32950 | 77.794 | 680 | 143 | 6 | 1 | 677 | 1 | 675 | 0.0 | 1098 |
MS.gene98556.t1 | AT2G32950 | 81.022 | 548 | 98 | 4 | 132 | 677 | 19 | 562 | 0.0 | 923 |
MS.gene98556.t1 | AT3G15354 | 36.508 | 567 | 290 | 9 | 148 | 673 | 54 | 591 | 3.17e-115 | 358 |
MS.gene98556.t1 | AT3G15354 | 36.508 | 567 | 290 | 9 | 148 | 673 | 54 | 591 | 3.17e-115 | 358 |
MS.gene98556.t1 | AT1G53090 | 46.849 | 365 | 185 | 3 | 316 | 673 | 208 | 570 | 9.18e-115 | 356 |
MS.gene98556.t1 | AT3G15354 | 36.508 | 567 | 290 | 9 | 148 | 673 | 304 | 841 | 4.83e-112 | 357 |
MS.gene98556.t1 | AT1G53090 | 46.849 | 365 | 185 | 3 | 316 | 673 | 429 | 791 | 5.68e-112 | 356 |
MS.gene98556.t1 | AT1G53090 | 46.849 | 365 | 185 | 3 | 316 | 673 | 429 | 791 | 5.68e-112 | 356 |
MS.gene98556.t1 | AT1G53090 | 46.849 | 365 | 185 | 3 | 316 | 673 | 429 | 791 | 5.68e-112 | 356 |
MS.gene98556.t1 | AT4G11110 | 48.071 | 337 | 165 | 2 | 349 | 675 | 699 | 1035 | 4.71e-105 | 343 |
MS.gene98556.t1 | AT3G15354 | 35.626 | 567 | 287 | 10 | 148 | 673 | 304 | 833 | 8.38e-105 | 338 |
MS.gene98556.t1 | AT2G46340 | 37.381 | 527 | 280 | 9 | 160 | 675 | 541 | 1028 | 4.14e-104 | 340 |
MS.gene98556.t1 | AT2G46340 | 37.381 | 527 | 280 | 9 | 160 | 675 | 541 | 1028 | 4.14e-104 | 340 |
MS.gene98556.t1 | AT5G23730 | 35.061 | 328 | 181 | 11 | 374 | 674 | 41 | 363 | 3.22e-57 | 198 |
MS.gene98556.t1 | AT5G52250 | 33.746 | 323 | 181 | 12 | 372 | 673 | 70 | 380 | 6.43e-49 | 176 |
MS.gene98556.t1 | AT1G53090 | 45.604 | 182 | 97 | 1 | 316 | 497 | 429 | 608 | 2.57e-48 | 180 |
MS.gene98556.t1 | AT3G15354 | 30.729 | 384 | 203 | 7 | 148 | 497 | 304 | 658 | 8.94e-48 | 179 |
MS.gene98556.t1 | AT3G15610 | 26.906 | 223 | 146 | 7 | 367 | 585 | 93 | 302 | 1.27e-13 | 73.2 |
MS.gene98556.t1 | AT5G08390 | 27.933 | 179 | 123 | 5 | 458 | 634 | 9 | 183 | 4.26e-13 | 73.2 |
MS.gene98556.t1 | AT4G35050 | 24.242 | 198 | 137 | 6 | 396 | 581 | 141 | 337 | 6.96e-13 | 71.6 |
MS.gene98556.t1 | AT4G18900 | 27.488 | 211 | 140 | 6 | 421 | 619 | 233 | 442 | 1.35e-12 | 70.9 |
MS.gene98556.t1 | AT5G23430 | 27.072 | 181 | 126 | 5 | 452 | 628 | 1 | 179 | 3.30e-12 | 70.5 |
MS.gene98556.t1 | AT2G43770 | 27.320 | 194 | 128 | 7 | 436 | 619 | 109 | 299 | 3.32e-12 | 68.9 |
MS.gene98556.t1 | AT5G23430 | 27.072 | 181 | 126 | 5 | 452 | 628 | 1 | 179 | 3.35e-12 | 70.5 |
MS.gene98556.t1 | AT5G23430 | 27.072 | 181 | 126 | 5 | 452 | 628 | 1 | 179 | 3.35e-12 | 70.5 |
MS.gene98556.t1 | AT5G58230 | 25.833 | 240 | 154 | 9 | 357 | 579 | 115 | 347 | 4.83e-12 | 68.9 |
MS.gene98556.t1 | AT3G49660 | 25.743 | 202 | 140 | 7 | 427 | 622 | 118 | 315 | 2.01e-11 | 66.2 |
MS.gene98556.t1 | AT4G35370 | 28.643 | 199 | 134 | 5 | 428 | 618 | 222 | 420 | 2.95e-11 | 66.6 |
MS.gene98556.t1 | AT1G52730 | 25.225 | 222 | 152 | 6 | 367 | 584 | 93 | 304 | 3.03e-11 | 65.9 |
MS.gene98556.t1 | AT1G52730 | 25.225 | 222 | 152 | 6 | 367 | 584 | 93 | 304 | 3.03e-11 | 65.9 |
MS.gene98556.t1 | AT2G16780 | 23.737 | 198 | 138 | 6 | 396 | 581 | 140 | 336 | 6.26e-11 | 65.5 |
MS.gene98556.t1 | AT3G15980 | 26.749 | 243 | 153 | 8 | 438 | 672 | 30 | 255 | 9.59e-11 | 65.9 |
Find 150 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTCCTTTGGCAGAGTTTAA+TGG | 0.237138 | 5.2:+72596479 | MS.gene98556:intron |
CAGATAGTACACTGCGGTTA+TGG | 0.252524 | 5.2:+72597547 | MS.gene98556:CDS |
AACCCTCCTCGAATATTTAA+AGG | 0.258388 | 5.2:-72591780 | None:intergenic |
ATTCGAGGAGGGTTGTCTTC+AGG | 0.287880 | 5.2:+72591789 | MS.gene98556:CDS |
TTTGTAGATAACATTCTTGT+AGG | 0.307788 | 5.2:-72592986 | None:intergenic |
TTGCGGATGCTTGATGATTC+TGG | 0.320860 | 5.2:+72591699 | MS.gene98556:CDS |
TATTTCTCAAATCATAATAA+TGG | 0.348001 | 5.2:-72597434 | None:intergenic |
ACTTCATCAGTGCTGTTTGC+TGG | 0.354397 | 5.2:+72598288 | MS.gene98556:CDS |
TCCGAATTTCTTACTCGATA+AGG | 0.355252 | 5.2:+72587793 | MS.gene98556:CDS |
CACTGATGGGATCTCTTCTC+TGG | 0.356789 | 5.2:-72591869 | None:intergenic |
ATGAAGGAATTGTGACTGTT+TGG | 0.358639 | 5.2:+72596312 | MS.gene98556:CDS |
ATTCGGAAACAAATTACTAT+TGG | 0.363357 | 5.2:-72587777 | None:intergenic |
CAAAGTTTGGTGCACGAATC+AGG | 0.364240 | 5.2:+72596841 | MS.gene98556:CDS |
TTGACTATTTGCAGTTAGTA+TGG | 0.366718 | 5.2:-72598327 | None:intergenic |
AATTCGTATCTCTTTCTTGT+TGG | 0.388471 | 5.2:-72593040 | None:intergenic |
TTCACAGTATATAAATCAAT+CGG | 0.394235 | 5.2:+72591899 | MS.gene98556:CDS |
AGCAAGCACCAGCACTTTGA+TGG | 0.401646 | 5.2:-72598354 | None:intergenic |
TTCGAGGAGGGTTGTCTTCA+GGG | 0.403288 | 5.2:+72591790 | MS.gene98556:CDS |
AGATAGTACACTGCGGTTAT+GGG | 0.404349 | 5.2:+72597548 | MS.gene98556:CDS |
CAATGTCCTCCTTTATGAAC+TGG | 0.413835 | 5.2:-72591617 | None:intergenic |
TCTTTGAGCAGGTCAAAGTT+TGG | 0.423567 | 5.2:+72596828 | MS.gene98556:intron |
TGAAGGAATTGTGACTGTTT+GGG | 0.426678 | 5.2:+72596313 | MS.gene98556:CDS |
AGTTCATAAAGGAGGACATT+GGG | 0.430648 | 5.2:+72591619 | MS.gene98556:CDS |
ATTCAGCCAACATCGTTTCA+AGG | 0.444771 | 5.2:+72594157 | MS.gene98556:CDS |
CTATTTGCAGTTAGTATGGT+GGG | 0.447922 | 5.2:-72598323 | None:intergenic |
GACGATTTGTTTGCTACAGC+TGG | 0.448381 | 5.2:+72594911 | MS.gene98556:CDS |
TGTGTATTATTACTCATCTT+CGG | 0.448436 | 5.2:+72587717 | MS.gene98556:CDS |
CAAAACTTAGTTGCTTGAGT+TGG | 0.449682 | 5.2:+72596252 | MS.gene98556:CDS |
GTGAAGTATAATCCTGGATC+GGG | 0.450446 | 5.2:+72596908 | MS.gene98556:CDS |
GCCGGTGACGGTTACGGTGG+TGG | 0.453247 | 5.2:-72587564 | None:intergenic |
TCCTCCGCATCATCCATGTC+AGG | 0.456144 | 5.2:-72598251 | None:intergenic |
GACGCGTTTCTTACAGCTTG+TGG | 0.459464 | 5.2:+72587677 | MS.gene98556:CDS |
GGTTCGGGTTTGACGACGGC+GGG | 0.460222 | 5.2:-72587527 | None:intergenic |
AACTGATCTCCAGTTCATAA+AGG | 0.467802 | 5.2:+72591608 | MS.gene98556:CDS |
TTGATAATCTGCATACAAAT+CGG | 0.468114 | 5.2:-72587653 | None:intergenic |
ACCTTATCGAGTAAGAAATT+CGG | 0.468460 | 5.2:-72587794 | None:intergenic |
ACCCTCCTCGAATATTTAAA+GGG | 0.470850 | 5.2:-72591779 | None:intergenic |
AAAGGAGGACATTGGGGCCG+TGG | 0.471087 | 5.2:+72591626 | MS.gene98556:CDS |
AAGTCTCAAATCAGCTCTCA+TGG | 0.472937 | 5.2:+72591837 | MS.gene98556:CDS |
GCCGGCGATGTCGCCGGTGA+CGG | 0.473239 | 5.2:-72587576 | None:intergenic |
AAAATCATGGCATTCATCAA+TGG | 0.479333 | 5.2:+72591728 | MS.gene98556:CDS |
TCTCAGCAAGGAGTGACAAA+AGG | 0.479384 | 5.2:-72591196 | None:intergenic |
TGACAACTTTCACACGCTAC+AGG | 0.480406 | 5.2:+72593114 | MS.gene98556:CDS |
GCAATGTAATTCCCCGATCC+AGG | 0.483126 | 5.2:-72596920 | None:intergenic |
CGTGTGGTCATCTCCACAAC+AGG | 0.491234 | 5.2:-72596227 | None:intergenic |
TCTTGTGCCCACTGAAAACA+TGG | 0.491272 | 5.2:-72597470 | None:intergenic |
TGTATTCACTACTTACTGTA+AGG | 0.494510 | 5.2:-72598065 | None:intergenic |
TGCCCACTGAAAACATGGAC+TGG | 0.495346 | 5.2:-72597465 | None:intergenic |
GAAACAAATTACTATTGGTA+AGG | 0.495996 | 5.2:-72587772 | None:intergenic |
GCCTGCCGGAAATGCTCCAC+GGG | 0.497681 | 5.2:-72588772 | None:intergenic |
GATCCCTCTATGCTTGTATC+CGG | 0.500871 | 5.2:+72596552 | MS.gene98556:CDS |
ATCCGGTAGTGATGATTGTA+AGG | 0.506760 | 5.2:+72596569 | MS.gene98556:CDS |
ACTTATATCGTGCTCGGGAT+CGG | 0.512625 | 5.2:+72591664 | MS.gene98556:CDS |
ACCGTCACCGGCGACATCGC+CGG | 0.512699 | 5.2:+72587575 | MS.gene98556:CDS |
TAGATTTAGTTCCCCTGACA+TGG | 0.513170 | 5.2:+72598238 | MS.gene98556:CDS |
ACTCCGTCATGGATGCGATC+GGG | 0.514976 | 5.2:-72587610 | None:intergenic |
CAAATCAGCTCTCATGGACA+TGG | 0.515444 | 5.2:+72591843 | MS.gene98556:CDS |
TTTCCGGCAGGCGATACAAA+AGG | 0.515478 | 5.2:+72588783 | MS.gene98556:CDS |
CTCAGCAAGGAGTGACAAAA+GGG | 0.516560 | 5.2:-72591195 | None:intergenic |
GTCTCCGCCGGCGATGTCGC+CGG | 0.518097 | 5.2:-72587582 | None:intergenic |
GAATGGACTTATATCGTGCT+CGG | 0.518337 | 5.2:+72591658 | MS.gene98556:CDS |
CCCCGTGGAGCATTTCCGGC+AGG | 0.521449 | 5.2:+72588771 | MS.gene98556:CDS |
GATGTCGCCGGTGACGGTTA+CGG | 0.522426 | 5.2:-72587570 | None:intergenic |
ACTATTTGCAGTTAGTATGG+TGG | 0.523504 | 5.2:-72598324 | None:intergenic |
CGCCTGCCGGAAATGCTCCA+CGG | 0.524040 | 5.2:-72588773 | None:intergenic |
CTGTGAATCTGATCCACTGA+TGG | 0.527140 | 5.2:-72591883 | None:intergenic |
AAATCTCCAAGCCTCTGACT+TGG | 0.530640 | 5.2:+72598213 | MS.gene98556:CDS |
AATCATAATAATGGATGTGA+TGG | 0.531014 | 5.2:-72597425 | None:intergenic |
CATGTCTATATTTAAAACAC+TGG | 0.531620 | 5.2:-72596867 | None:intergenic |
TCCACCACCGTAACCGTCAC+CGG | 0.532903 | 5.2:+72587563 | MS.gene98556:CDS |
TCTAGCCCTTTAAATATTCG+AGG | 0.534972 | 5.2:+72591774 | MS.gene98556:CDS |
CATGGATGATGCGGAGGATG+AGG | 0.535745 | 5.2:+72598256 | MS.gene98556:CDS |
GATGATGCGGAGGATGAGGC+TGG | 0.535882 | 5.2:+72598260 | MS.gene98556:CDS |
TACCTTACAATCATCACTAC+CGG | 0.541446 | 5.2:-72596571 | None:intergenic |
TGCTGATGCAAGTTCATCGT+TGG | 0.542829 | 5.2:-72597520 | None:intergenic |
AACTCACCTTGAAACGATGT+TGG | 0.543525 | 5.2:-72594163 | None:intergenic |
AATGGACTTATATCGTGCTC+GGG | 0.547396 | 5.2:+72591659 | MS.gene98556:CDS |
TCACAGTATATAAATCAATC+GGG | 0.550556 | 5.2:+72591900 | MS.gene98556:CDS |
GTCTTTATCTAACTCCGTCA+TGG | 0.553871 | 5.2:-72587621 | None:intergenic |
TCAAGGCACCATCAAAGTGC+TGG | 0.553897 | 5.2:+72598346 | MS.gene98556:CDS |
TGGTTCGGGTTTGACGACGG+CGG | 0.555209 | 5.2:-72587528 | None:intergenic |
TCCGACGGAGTGTTCTTCCA+TGG | 0.556975 | 5.2:-72587495 | None:intergenic |
GCCCTTTAAATATTCGAGGA+GGG | 0.557638 | 5.2:+72591778 | MS.gene98556:CDS |
TGTGAAGTATAATCCTGGAT+CGG | 0.558008 | 5.2:+72596907 | MS.gene98556:CDS |
TCTATGCCAAGTCAGAGGCT+TGG | 0.560666 | 5.2:-72598219 | None:intergenic |
ATCGGTACTCTGTGAAGTTG+CGG | 0.565158 | 5.2:+72591682 | MS.gene98556:CDS |
TGTTGTGTGAAGTATAATCC+TGG | 0.566028 | 5.2:+72596902 | MS.gene98556:CDS |
AACAGGACAATGAGCATCTG+TGG | 0.567948 | 5.2:-72596210 | None:intergenic |
GGATGGTTCGGGTTTGACGA+CGG | 0.571721 | 5.2:-72587531 | None:intergenic |
AACTCCGTCATGGATGCGAT+CGG | 0.572581 | 5.2:-72587611 | None:intergenic |
AAGAGCATGAAAAGCGTGCA+TGG | 0.573190 | 5.2:+72596508 | MS.gene98556:CDS |
CACTGAAAACATGGACTGGA+CGG | 0.574289 | 5.2:-72597461 | None:intergenic |
GGCCGTGGAGAAACATAGAA+TGG | 0.575022 | 5.2:+72591641 | MS.gene98556:CDS |
ACGAATTTCATAAGTCGAGA+AGG | 0.577292 | 5.2:+72593056 | MS.gene98556:CDS |
CCTCCGCATCATCCATGTCA+GGG | 0.577657 | 5.2:-72598250 | None:intergenic |
TATTTAAAGGGCTAGATGCA+AGG | 0.578156 | 5.2:-72591767 | None:intergenic |
AAAGAAGAGGGTGCATACAC+AGG | 0.578452 | 5.2:+72591938 | MS.gene98556:CDS |
TTGCTCTAGTTAGAAAGAAG+AGG | 0.582886 | 5.2:+72591925 | MS.gene98556:CDS |
ATAGCTAGTAGTGATTATGA+AGG | 0.589727 | 5.2:+72596296 | MS.gene98556:CDS |
AGATGCTCATTGTCCTGTTG+TGG | 0.590252 | 5.2:+72596214 | MS.gene98556:CDS |
TTCCCCTGACATGGATGATG+CGG | 0.590370 | 5.2:+72598247 | MS.gene98556:CDS |
TTGACGACGGCGGGAACGAG+TGG | 0.591311 | 5.2:-72587518 | None:intergenic |
TTTCCCGATCGCATCCATGA+CGG | 0.591879 | 5.2:+72587607 | MS.gene98556:CDS |
GTCCATTCTATGTTTCTCCA+CGG | 0.592829 | 5.2:-72591643 | None:intergenic |
CAGGCTGCAGATAAGCCACA+TGG | 0.596225 | 5.2:+72593017 | MS.gene98556:CDS |
TCTCTTTCTTGTTGGCCATG+TGG | 0.598443 | 5.2:-72593032 | None:intergenic |
AGCCCTTTAAATATTCGAGG+AGG | 0.599877 | 5.2:+72591777 | MS.gene98556:CDS |
GGCGGGAACGAGTGGTCCGA+CGG | 0.601510 | 5.2:-72587510 | None:intergenic |
CTACCGGATACAAGCATAGA+GGG | 0.604059 | 5.2:-72596555 | None:intergenic |
TGCTCTAGTTAGAAAGAAGA+GGG | 0.610073 | 5.2:+72591926 | MS.gene98556:CDS |
TATTTGCAGTTAGTATGGTG+GGG | 0.611419 | 5.2:-72598322 | None:intergenic |
CCCTGACATGGATGATGCGG+AGG | 0.614289 | 5.2:+72598250 | MS.gene98556:CDS |
TTGGGATGTGACCACTCGAA+AGG | 0.618691 | 5.2:+72596331 | MS.gene98556:CDS |
GTACAGGTCCGCACTTTCAG+AGG | 0.618814 | 5.2:+72598015 | MS.gene98556:intron |
ACTACCGGATACAAGCATAG+AGG | 0.622223 | 5.2:-72596556 | None:intergenic |
TGACGGTTACGGTGGTGGAG+AGG | 0.622505 | 5.2:-72587559 | None:intergenic |
ATACTAACTGCAAATAGTCA+AGG | 0.622948 | 5.2:+72598329 | MS.gene98556:CDS |
ATTCTGGTGGAAGAAAATCA+TGG | 0.624185 | 5.2:+72591715 | MS.gene98556:CDS |
GATCGGGAAATTGTCTCCGC+CGG | 0.625811 | 5.2:-72587594 | None:intergenic |
CTAAATCTATGCCAAGTCAG+AGG | 0.627688 | 5.2:-72598224 | None:intergenic |
CGGATGCTTGATGATTCTGG+TGG | 0.629544 | 5.2:+72591702 | MS.gene98556:CDS |
CAGAGAAGAGATCCCATCAG+TGG | 0.630890 | 5.2:+72591870 | MS.gene98556:CDS |
GTTCACAATTACCTTTCGAG+TGG | 0.633179 | 5.2:-72596342 | None:intergenic |
TGAAGTATTTGTCTACCACA+AGG | 0.636400 | 5.2:+72598110 | MS.gene98556:CDS |
CAGTTCATAAAGGAGGACAT+TGG | 0.639000 | 5.2:+72591618 | MS.gene98556:CDS |
TGTGAATCTGATCCACTGAT+GGG | 0.640014 | 5.2:-72591882 | None:intergenic |
TAGCGTGGCCTCTGAAAGTG+CGG | 0.641991 | 5.2:-72598023 | None:intergenic |
TGATCTCCAGTTCATAAAGG+AGG | 0.645464 | 5.2:+72591611 | MS.gene98556:CDS |
GTCGCCGGTGACGGTTACGG+TGG | 0.647292 | 5.2:-72587567 | None:intergenic |
ACAGGACAATGAGCATCTGT+GGG | 0.650389 | 5.2:-72596209 | None:intergenic |
GTTCATAAAGGAGGACATTG+GGG | 0.653194 | 5.2:+72591620 | MS.gene98556:CDS |
CTCCGCATCATCCATGTCAG+GGG | 0.653353 | 5.2:-72598249 | None:intergenic |
TAGCAAACAAATCGTCATCA+CGG | 0.653471 | 5.2:-72594904 | None:intergenic |
AGTCGAGAAGGTTACAGTGG+TGG | 0.654884 | 5.2:+72593068 | MS.gene98556:CDS |
AGTAGTGAATACATTGCATG+TGG | 0.658370 | 5.2:+72598075 | MS.gene98556:CDS |
GGGTTGTGAAGTGACAATGA+AGG | 0.664179 | 5.2:+72591163 | MS.gene98556:intron |
ACCATGGAAGAACACTCCGT+CGG | 0.669086 | 5.2:+72587494 | None:intergenic |
GTCACCGGCGACATCGCCGG+CGG | 0.670612 | 5.2:+72587578 | MS.gene98556:CDS |
TCAATGGACAAGAATAGCAG+TGG | 0.671034 | 5.2:+72591744 | MS.gene98556:CDS |
TTGTGAAGTGACAATGAAGG+AGG | 0.671879 | 5.2:+72591166 | MS.gene98556:CDS |
GTCATTGCAGAAATAAGACA+CGG | 0.676332 | 5.2:+72594123 | MS.gene98556:CDS |
AAAAGTGATTGTCCTTGCTG+TGG | 0.679991 | 5.2:+72587743 | MS.gene98556:CDS |
ATAAGTCGAGAAGGTTACAG+TGG | 0.684944 | 5.2:+72593065 | MS.gene98556:CDS |
AAAAGTTGATGAGTTGAAGG+AGG | 0.690590 | 5.2:+72591298 | MS.gene98556:CDS |
GTAAGGTAATGACCACAGCA+AGG | 0.699689 | 5.2:-72587755 | None:intergenic |
CCTGCCGGAAATGCTCCACG+GGG | 0.700061 | 5.2:-72588771 | None:intergenic |
TGAAGTATAATCCTGGATCG+GGG | 0.700073 | 5.2:+72596909 | MS.gene98556:CDS |
AGTTTGGTGCACGAATCAGG+AGG | 0.729323 | 5.2:+72596844 | MS.gene98556:CDS |
CTGCCGGAAATGCTCCACGG+GGG | 0.738551 | 5.2:-72588770 | None:intergenic |
CATCAACAGATAGTACACTG+CGG | 0.845506 | 5.2:+72597541 | MS.gene98556:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 72587497 | 72598382 | 72587497 | ID=MS.gene98556 |
chr5.2 | mRNA | 72587497 | 72598382 | 72587497 | ID=MS.gene98556.t1;Parent=MS.gene98556 |
chr5.2 | exon | 72587497 | 72587814 | 72587497 | ID=MS.gene98556.t1.exon1;Parent=MS.gene98556.t1 |
chr5.2 | CDS | 72587497 | 72587814 | 72587497 | ID=cds.MS.gene98556.t1;Parent=MS.gene98556.t1 |
chr5.2 | exon | 72588727 | 72588804 | 72588727 | ID=MS.gene98556.t1.exon2;Parent=MS.gene98556.t1 |
chr5.2 | CDS | 72588727 | 72588804 | 72588727 | ID=cds.MS.gene98556.t1;Parent=MS.gene98556.t1 |
chr5.2 | exon | 72591164 | 72591319 | 72591164 | ID=MS.gene98556.t1.exon3;Parent=MS.gene98556.t1 |
chr5.2 | CDS | 72591164 | 72591319 | 72591164 | ID=cds.MS.gene98556.t1;Parent=MS.gene98556.t1 |
chr5.2 | exon | 72591603 | 72591959 | 72591603 | ID=MS.gene98556.t1.exon4;Parent=MS.gene98556.t1 |
chr5.2 | CDS | 72591603 | 72591959 | 72591603 | ID=cds.MS.gene98556.t1;Parent=MS.gene98556.t1 |
chr5.2 | exon | 72592978 | 72593135 | 72592978 | ID=MS.gene98556.t1.exon5;Parent=MS.gene98556.t1 |
chr5.2 | CDS | 72592978 | 72593135 | 72592978 | ID=cds.MS.gene98556.t1;Parent=MS.gene98556.t1 |
chr5.2 | exon | 72594113 | 72594178 | 72594113 | ID=MS.gene98556.t1.exon6;Parent=MS.gene98556.t1 |
chr5.2 | CDS | 72594113 | 72594178 | 72594113 | ID=cds.MS.gene98556.t1;Parent=MS.gene98556.t1 |
chr5.2 | exon | 72594892 | 72594970 | 72594892 | ID=MS.gene98556.t1.exon7;Parent=MS.gene98556.t1 |
chr5.2 | CDS | 72594892 | 72594970 | 72594892 | ID=cds.MS.gene98556.t1;Parent=MS.gene98556.t1 |
chr5.2 | exon | 72596197 | 72596352 | 72596197 | ID=MS.gene98556.t1.exon8;Parent=MS.gene98556.t1 |
chr5.2 | CDS | 72596197 | 72596352 | 72596197 | ID=cds.MS.gene98556.t1;Parent=MS.gene98556.t1 |
chr5.2 | exon | 72596492 | 72596590 | 72596492 | ID=MS.gene98556.t1.exon9;Parent=MS.gene98556.t1 |
chr5.2 | CDS | 72596492 | 72596590 | 72596492 | ID=cds.MS.gene98556.t1;Parent=MS.gene98556.t1 |
chr5.2 | exon | 72596839 | 72596943 | 72596839 | ID=MS.gene98556.t1.exon10;Parent=MS.gene98556.t1 |
chr5.2 | CDS | 72596839 | 72596943 | 72596839 | ID=cds.MS.gene98556.t1;Parent=MS.gene98556.t1 |
chr5.2 | exon | 72597411 | 72597590 | 72597411 | ID=MS.gene98556.t1.exon11;Parent=MS.gene98556.t1 |
chr5.2 | CDS | 72597411 | 72597590 | 72597411 | ID=cds.MS.gene98556.t1;Parent=MS.gene98556.t1 |
chr5.2 | exon | 72598021 | 72598131 | 72598021 | ID=MS.gene98556.t1.exon12;Parent=MS.gene98556.t1 |
chr5.2 | CDS | 72598021 | 72598131 | 72598021 | ID=cds.MS.gene98556.t1;Parent=MS.gene98556.t1 |
chr5.2 | exon | 72598212 | 72598382 | 72598212 | ID=MS.gene98556.t1.exon13;Parent=MS.gene98556.t1 |
chr5.2 | CDS | 72598212 | 72598382 | 72598212 | ID=cds.MS.gene98556.t1;Parent=MS.gene98556.t1 |
Gene Sequence |
Protein sequence |