Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98566.t1 | XP_013466657.1 | 94.2 | 399 | 13 | 1 | 3 | 391 | 156 | 554 | 1.30E-206 | 728.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98566.t1 | Q9ZT92 | 33.1 | 317 | 181 | 10 | 69 | 370 | 208 | 508 | 1.8e-34 | 148.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98566.t1 | A0A072VGX6 | 94.2 | 399 | 13 | 1 | 3 | 391 | 156 | 554 | 9.7e-207 | 728.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05880 | MS.gene98566 | 0.800618 | 1.32E-48 | -1.69E-46 |
| MS.gene061006 | MS.gene98566 | 0.83327 | 5.87E-56 | -1.69E-46 |
| MS.gene061007 | MS.gene98566 | 0.908919 | 1.01E-81 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98566.t1 | MTR_1g033500 | 93.766 | 401 | 15 | 1 | 1 | 391 | 154 | 554 | 0.0 | 768 |
| MS.gene98566.t1 | MTR_1g033540 | 66.098 | 410 | 113 | 5 | 8 | 391 | 148 | 557 | 0.0 | 526 |
| MS.gene98566.t1 | MTR_1g089865 | 35.484 | 279 | 154 | 8 | 101 | 367 | 202 | 466 | 1.71e-46 | 167 |
| MS.gene98566.t1 | MTR_7g094250 | 31.720 | 372 | 208 | 14 | 13 | 365 | 108 | 452 | 6.63e-44 | 159 |
| MS.gene98566.t1 | MTR_1g089865 | 38.372 | 172 | 98 | 4 | 101 | 269 | 202 | 368 | 1.21e-33 | 129 |
| MS.gene98566.t1 | MTR_1g014720 | 27.492 | 331 | 219 | 10 | 1 | 316 | 79 | 403 | 4.11e-31 | 124 |
| MS.gene98566.t1 | MTR_2g007120 | 31.513 | 238 | 149 | 7 | 102 | 327 | 204 | 439 | 2.64e-30 | 122 |
| MS.gene98566.t1 | MTR_2g007060 | 32.547 | 212 | 134 | 5 | 102 | 306 | 145 | 354 | 5.62e-29 | 116 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98566.t1 | AT1G14710 | 46.135 | 401 | 174 | 11 | 6 | 385 | 148 | 527 | 2.65e-100 | 310 |
| MS.gene98566.t1 | AT1G14710 | 46.135 | 401 | 174 | 11 | 6 | 385 | 148 | 527 | 2.65e-100 | 310 |
| MS.gene98566.t1 | AT4G02940 | 35.833 | 240 | 140 | 5 | 69 | 301 | 208 | 440 | 9.87e-41 | 152 |
| MS.gene98566.t1 | AT2G48080 | 33.213 | 277 | 168 | 8 | 60 | 326 | 117 | 386 | 1.27e-38 | 144 |
| MS.gene98566.t1 | AT2G17970 | 34.071 | 226 | 136 | 5 | 101 | 314 | 135 | 359 | 1.25e-32 | 127 |
| MS.gene98566.t1 | AT2G17970 | 34.071 | 226 | 136 | 5 | 101 | 314 | 135 | 359 | 1.25e-32 | 127 |
| MS.gene98566.t1 | AT2G17970 | 34.071 | 226 | 136 | 5 | 101 | 314 | 135 | 359 | 1.25e-32 | 127 |
| MS.gene98566.t1 | AT2G17970 | 34.513 | 226 | 135 | 6 | 101 | 314 | 126 | 350 | 1.29e-32 | 127 |
| MS.gene98566.t1 | AT2G17970 | 34.071 | 226 | 136 | 5 | 101 | 314 | 168 | 392 | 1.30e-32 | 128 |
| MS.gene98566.t1 | AT2G17970 | 34.071 | 226 | 136 | 5 | 101 | 314 | 168 | 392 | 1.30e-32 | 128 |
| MS.gene98566.t1 | AT2G17970 | 34.071 | 226 | 136 | 5 | 101 | 314 | 209 | 433 | 2.85e-32 | 127 |
| MS.gene98566.t1 | AT1G48980 | 34.123 | 211 | 124 | 5 | 101 | 303 | 93 | 296 | 7.68e-31 | 120 |
| MS.gene98566.t1 | AT1G48980 | 34.123 | 211 | 124 | 5 | 101 | 303 | 97 | 300 | 7.71e-31 | 120 |
| MS.gene98566.t1 | AT4G36090 | 32.479 | 234 | 145 | 6 | 102 | 323 | 146 | 378 | 1.30e-30 | 122 |
| MS.gene98566.t1 | AT4G36090 | 32.479 | 234 | 145 | 6 | 102 | 323 | 214 | 446 | 2.73e-30 | 122 |
| MS.gene98566.t1 | AT2G17970 | 34.171 | 199 | 123 | 4 | 101 | 292 | 135 | 332 | 3.79e-30 | 119 |
| MS.gene98566.t1 | AT2G17970 | 34.171 | 199 | 123 | 4 | 101 | 292 | 209 | 406 | 1.13e-29 | 119 |
| MS.gene98566.t1 | AT1G48980 | 33.668 | 199 | 117 | 5 | 101 | 291 | 97 | 288 | 4.09e-28 | 113 |
| MS.gene98566.t1 | AT4G36090 | 33.503 | 197 | 123 | 4 | 102 | 291 | 214 | 409 | 1.65e-27 | 112 |
| MS.gene98566.t1 | AT2G17970 | 32.759 | 174 | 109 | 4 | 101 | 267 | 209 | 381 | 1.36e-20 | 92.8 |
| MS.gene98566.t1 | AT4G36090 | 33.714 | 175 | 95 | 6 | 102 | 269 | 214 | 374 | 1.35e-19 | 90.1 |
| MS.gene98566.t1 | AT4G36090 | 33.714 | 175 | 95 | 6 | 102 | 269 | 214 | 374 | 1.35e-19 | 90.1 |
Find 0 sgRNAs with CRISPR-Local
Find 270 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATGATTAATTAATATAATA+AGG | - | 10365:8039-8058 | MS.gene98566:intergenic | 10.0% |
| !!! | AAATATACAATTTAAAATTG+TGG | + | 10365:7954-7973 | MS.gene98566:intron | 10.0% |
| !!! | CTTTTATATTTTATTTTATG+GGG | + | 10365:6438-6457 | MS.gene98566:intron | 10.0% |
| !!! | GTATGTTTTTTTTTTTTTTT+TGG | + | 10365:7435-7454 | MS.gene98566:intron | 10.0% |
| !!! | TTTTTTTTTTTTTTTTGGAA+GGG | + | 10365:7440-7459 | MS.gene98566:intron | 10.0% |
| !! | AAAAAAAATTGACAACAATT+TGG | - | 10365:8189-8208 | MS.gene98566:intergenic | 15.0% |
| !! | ACAGAGTAAATAATAATAAT+AGG | - | 10365:8962-8981 | MS.gene98566:intergenic | 15.0% |
| !! | ATTACAAATAATCATAGTAA+TGG | - | 10365:8241-8260 | MS.gene98566:intergenic | 15.0% |
| !! | ATTCAAAAAAAGTTATCAAA+AGG | + | 10365:6856-6875 | MS.gene98566:intron | 15.0% |
| !! | GATAGATATTTAAAAAGATT+AGG | - | 10365:6080-6099 | MS.gene98566:intergenic | 15.0% |
| !! | TAAAAGATATAAGAAAAAGA+AGG | - | 10365:6424-6443 | MS.gene98566:intergenic | 15.0% |
| !! | TAAGTGTATTTATGAAATTT+GGG | + | 10365:5883-5902 | MS.gene98566:intron | 15.0% |
| !! | TACTATGATTATTTGTAATT+AGG | + | 10365:8242-8261 | MS.gene98566:intron | 15.0% |
| !! | TTACAAATAATCATAGTAAT+GGG | - | 10365:8240-8259 | MS.gene98566:intergenic | 15.0% |
| !!! | AATTTATTTTTCATATGATC+TGG | + | 10365:5451-5470 | MS.gene98566:intron | 15.0% |
| !!! | GTTTTTATTTACAATTTTTG+TGG | + | 10365:8571-8590 | MS.gene98566:intron | 15.0% |
| !!! | GTTTTTTTTTTTTTTTTGGA+AGG | + | 10365:7439-7458 | MS.gene98566:intron | 15.0% |
| !!! | TTTTTTTTTTTTTTTGGAAG+GGG | + | 10365:7441-7460 | MS.gene98566:intron | 15.0% |
| !! | AAAAAAAAACGACAACAATT+TGG | - | 10365:8104-8123 | MS.gene98566:intergenic | 20.0% |
| !! | AAATGTATTACTTTCTAAGT+AGG | + | 10365:8400-8419 | MS.gene98566:intron | 20.0% |
| !! | AACTTTAAGTATTATGTCTT+TGG | + | 10365:7000-7019 | MS.gene98566:intron | 20.0% |
| !! | AGTACAATAAATATTTGACT+TGG | - | 10365:6956-6975 | MS.gene98566:intergenic | 20.0% |
| !! | AGTAGATGAAAAATTCAATA+TGG | - | 10365:5685-5704 | MS.gene98566:intergenic | 20.0% |
| !! | ATAAAAAATCATCAATCTGA+TGG | + | 10365:5724-5743 | MS.gene98566:CDS | 20.0% |
| !! | CCATATTACAATTATCTATA+GGG | + | 10365:7518-7537 | MS.gene98566:intron | 20.0% |
| !! | CTAAGTGTATTTATGAAATT+TGG | + | 10365:5882-5901 | MS.gene98566:intron | 20.0% |
| !! | TAATAATAGGCCATAATAAT+CGG | - | 10365:8949-8968 | MS.gene98566:intergenic | 20.0% |
| !! | TACTTAGAAAGTAATACATT+TGG | - | 10365:8401-8420 | MS.gene98566:intergenic | 20.0% |
| !! | TCATAGAAGACAATTAATTA+TGG | + | 10365:8266-8285 | MS.gene98566:intron | 20.0% |
| !! | TCCATATTACAATTATCTAT+AGG | + | 10365:7517-7536 | MS.gene98566:intron | 20.0% |
| !! | TGGTTAACAAAGTTTAAATA+TGG | - | 10365:8165-8184 | MS.gene98566:intergenic | 20.0% |
| !!! | AAATTTGACTACAATTTTGA+TGG | + | 10365:7777-7796 | MS.gene98566:intron | 20.0% |
| !!! | AATGGTTTTAAATTGCAATT+CGG | + | 10365:5494-5513 | MS.gene98566:intron | 20.0% |
| !!! | ATAATCAGTTTTATCAATTG+CGG | - | 10365:5372-5391 | MS.gene98566:intergenic | 20.0% |
| !!! | ATATTGAATTTTTCATCTAC+TGG | + | 10365:5684-5703 | MS.gene98566:intron | 20.0% |
| !!! | ATTTGTTAACCTTATTTGTT+TGG | + | 10365:7699-7718 | MS.gene98566:intron | 20.0% |
| !!! | TATTTTGTTGTTGTTACTAT+TGG | + | 10365:7734-7753 | MS.gene98566:intron | 20.0% |
| !!! | TTGTTTTTCATTCTTTGTTT+TGG | + | 10365:6649-6668 | MS.gene98566:intron | 20.0% |
| !!! | TTTTTTTTTTTTTTGGAAGG+GGG | + | 10365:7442-7461 | MS.gene98566:intron | 20.0% |
| ! | AAAAAACAGCAAGTAATGTT+CGG | + | 10365:5988-6007 | MS.gene98566:intron | 25.0% |
| ! | AAAATTGACAACAATTTGGT+TGG | - | 10365:8185-8204 | MS.gene98566:intergenic | 25.0% |
| ! | AAACAAAAACCTAGAATTCA+TGG | - | 10365:8524-8543 | MS.gene98566:intergenic | 25.0% |
| ! | AATAATAGGCCATAATAATC+GGG | - | 10365:8948-8967 | MS.gene98566:intergenic | 25.0% |
| ! | AATGAAAAACAAATTAGCGA+TGG | - | 10365:6641-6660 | MS.gene98566:intergenic | 25.0% |
| ! | AATTCAATACCCGATTATTA+TGG | + | 10365:8936-8955 | MS.gene98566:intron | 25.0% |
| ! | ACCAACATTAAAAATATGTG+CGG | - | 10365:6746-6765 | MS.gene98566:intergenic | 25.0% |
| ! | ATGTTACTGTGCTTATAATT+TGG | + | 10365:8633-8652 | MS.gene98566:intron | 25.0% |
| ! | CAAAAAAAGTTATCAAAAGG+AGG | + | 10365:6859-6878 | MS.gene98566:intron | 25.0% |
| ! | CAAAAATGACAAAAAGAATG+AGG | - | 10365:6387-6406 | MS.gene98566:intergenic | 25.0% |
| ! | CCCTATAGATAATTGTAATA+TGG | - | 10365:7521-7540 | MS.gene98566:intergenic | 25.0% |
| ! | GCTAATATCTTTAATGAACA+GGG | + | 10365:7089-7108 | MS.gene98566:intron | 25.0% |
| ! | TCAAATTTGTAAACGTAACA+CGG | + | 10365:7492-7511 | MS.gene98566:intron | 25.0% |
| ! | TGAGTTAAATACATTGCTTA+TGG | + | 10365:8846-8865 | MS.gene98566:intron | 25.0% |
| ! | TGCTAATATCTTTAATGAAC+AGG | + | 10365:7088-7107 | MS.gene98566:intron | 25.0% |
| ! | TGGTCATTATTATAGAAGTA+GGG | - | 10365:7264-7283 | MS.gene98566:intergenic | 25.0% |
| ! | TGGTTAACGAAGTTTAAATA+TGG | - | 10365:8080-8099 | MS.gene98566:intergenic | 25.0% |
| ! | TTATTCAAATCATAGTCAAC+AGG | - | 10365:5826-5845 | MS.gene98566:intergenic | 25.0% |
| ! | TTCATTGGTCAATGATTTAA+GGG | + | 10365:6549-6568 | MS.gene98566:CDS | 25.0% |
| ! | TTCATTTAGTGAAACTTCAT+TGG | - | 10365:7284-7303 | MS.gene98566:intergenic | 25.0% |
| ! | TTGGTCATTATTATAGAAGT+AGG | - | 10365:7265-7284 | MS.gene98566:intergenic | 25.0% |
| ! | TTGTATATTTGAACACGATT+TGG | - | 10365:7944-7963 | MS.gene98566:intergenic | 25.0% |
| !! | AAAGATTAGGATGTCAATTT+TGG | - | 10365:6067-6086 | MS.gene98566:intergenic | 25.0% |
| !! | AAGATTAGGATGTCAATTTT+GGG | - | 10365:6066-6085 | MS.gene98566:intergenic | 25.0% |
| !! | CTTTTAGTCAATTGTATTCA+AGG | + | 10365:8677-8696 | MS.gene98566:intron | 25.0% |
| !! | GCTAACTATCATCTTTAAAA+TGG | + | 10365:6902-6921 | MS.gene98566:intron | 25.0% |
| !! | TAGTTATCAAAAGGTCATTT+TGG | + | 10365:6830-6849 | MS.gene98566:intron | 25.0% |
| !!! | ATTGCAACATTTTGAAACTT+AGG | - | 10365:7046-7065 | MS.gene98566:intergenic | 25.0% |
| !!! | GAAATGTTACTATTTTTAGC+AGG | - | 10365:5624-5643 | MS.gene98566:intergenic | 25.0% |
| !!! | GTTGATGATGTTTAAAATCA+TGG | + | 10365:7976-7995 | MS.gene98566:intron | 25.0% |
| !!! | TTGCAACATTTTGAAACTTA+GGG | - | 10365:7045-7064 | MS.gene98566:intergenic | 25.0% |
| !!! | TTTTTGTGTTGCAGTTTTAA+TGG | + | 10365:5476-5495 | MS.gene98566:intron | 25.0% |
| AAAAACGACAACAATTTGGT+TGG | - | 10365:8100-8119 | MS.gene98565:intergenic | 30.0% | |
| AAACTGATTATACTACACCA+TGG | + | 10365:5381-5400 | MS.gene98566:intron | 30.0% | |
| AAGAGTGAAGAAGTTAAATC+TGG | + | 10365:4988-5007 | MS.gene98566:CDS | 30.0% | |
| AAGATGATAGTTAGCATCAA+AGG | - | 10365:6897-6916 | MS.gene98566:intergenic | 30.0% | |
| AAGGTTAACAAATATTACCC+AGG | - | 10365:7692-7711 | MS.gene98566:intergenic | 30.0% | |
| AATCATCCACTAAACGTAAT+TGG | + | 10365:8052-8071 | MS.gene98566:intron | 30.0% | |
| AATTTACCCTACCTAATACT+AGG | - | 10365:8336-8355 | MS.gene98566:intergenic | 30.0% | |
| ACATTGCTTATGGTAATTAG+AGG | + | 10365:8856-8875 | MS.gene98566:intron | 30.0% | |
| ACCAAGTACATTTAAAGATG+AGG | - | 10365:8373-8392 | MS.gene98566:intergenic | 30.0% | |
| ACTAGCATACCAAACAAATA+AGG | - | 10365:7711-7730 | MS.gene98566:intergenic | 30.0% | |
| ACTGTTAAACCACAATGTTA+GGG | + | 10365:5145-5164 | MS.gene98566:intron | 30.0% | |
| AGTTTCAAAACTTGGTTCAT+TGG | + | 10365:6534-6553 | MS.gene98566:CDS | 30.0% | |
| ATATCATGCATCATGATTCA+CGG | - | 10365:8714-8733 | MS.gene98566:intergenic | 30.0% | |
| ATGATATCTTGAAACAAGGA+AGG | - | 10365:7335-7354 | MS.gene98566:intergenic | 30.0% | |
| ATTTACCCTACCTAATACTA+GGG | - | 10365:8335-8354 | MS.gene98566:intergenic | 30.0% | |
| CAAACTACATGTATCCTATA+AGG | - | 10365:6174-6193 | MS.gene98566:intergenic | 30.0% | |
| CTCAATGATATCTTGAAACA+AGG | - | 10365:7339-7358 | MS.gene98566:intergenic | 30.0% | |
| GTAGTTGAGTAGTTATCAAA+AGG | + | 10365:6821-6840 | MS.gene98566:intron | 30.0% | |
| GTTCATTGGTCAATGATTTA+AGG | + | 10365:6548-6567 | MS.gene98566:CDS | 30.0% | |
| TAAATACACTTAGCAAAGTC+TGG | - | 10365:5875-5894 | MS.gene98566:intergenic | 30.0% | |
| TAACGATCGAAAAAACTATG+CGG | - | 10365:8761-8780 | MS.gene98566:intergenic | 30.0% | |
| TATTATAGAAGTAGGGAATG+TGG | - | 10365:7257-7276 | MS.gene98566:intergenic | 30.0% | |
| TGAATCATGATGCATGATAT+GGG | + | 10365:8714-8733 | MS.gene98566:intron | 30.0% | |
| TGACAAACACATAAAGATGA+GGG | - | 10365:6028-6047 | MS.gene98566:intergenic | 30.0% | |
| TGGTTAATGCTATTCAAATG+TGG | + | 10365:7797-7816 | MS.gene98566:intron | 30.0% | |
| TGTAATTAACCATGACTTTC+TGG | + | 10365:7894-7913 | MS.gene98566:intron | 30.0% | |
| TTTCATCATCCATGAATTCT+AGG | + | 10365:8512-8531 | MS.gene98566:intron | 30.0% | |
| TTTGTCTGATTGTTATGCAA+TGG | + | 10365:6688-6707 | MS.gene98566:intron | 30.0% | |
| ! | AAGGGAATTTTGTGGTTAAA+GGG | + | 10365:4950-4969 | MS.gene98566:CDS | 30.0% |
| ! | AGTACTGAAGTTTCAAAACT+TGG | + | 10365:6526-6545 | MS.gene98566:CDS | 30.0% |
| ! | ATTTGGCTTAGTAACTTGAA+AGG | + | 10365:8650-8669 | MS.gene98566:intron | 30.0% |
| ! | CTTTTGTTAACCACATATGT+CGG | - | 10365:7118-7137 | MS.gene98566:intergenic | 30.0% |
| ! | GTAGGGTAAATTGTTTTCTT+TGG | + | 10365:8344-8363 | MS.gene98566:intron | 30.0% |
| ! | TACCCAGTATTTTCAAATAG+CGG | + | 10365:5217-5236 | MS.gene98566:intron | 30.0% |
| !! | AAATATTTGACTTGGCAACT+TGG | - | 10365:6948-6967 | MS.gene98566:intergenic | 30.0% |
| !! | TCCGCACATATTTTTAATGT+TGG | + | 10365:6742-6761 | MS.gene98566:intron | 30.0% |
| !!! | TCATGATTTTAATTGCAGTC+AGG | - | 10365:5536-5555 | MS.gene98566:intergenic | 30.0% |
| !!! | TGCAACATTTTGAAACTTAG+GGG | - | 10365:7044-7063 | MS.gene98566:intergenic | 30.0% |
| AATTTCCAGAGCTCTTCAAA+AGG | - | 10365:5750-5769 | MS.gene98566:intergenic | 35.0% | |
| ACAGAATGTGCATCAAATTC+TGG | + | 10365:5790-5809 | MS.gene98566:CDS | 35.0% | |
| ACAGGTGTAGCAAATTGTAT+GGG | - | 10365:9315-9334 | MS.gene98566:intergenic | 35.0% | |
| AGGAGAAGAAAGGTAAATGA+TGG | + | 10365:5055-5074 | MS.gene98566:intron | 35.0% | |
| AGTGAAGAAGTTAAATCTGG+TGG | + | 10365:4991-5010 | MS.gene98566:CDS | 35.0% | |
| AGTTATCAAAAGGAGGTCTA+TGG | + | 10365:6866-6885 | MS.gene98566:intron | 35.0% | |
| ATGCGTTGTTTGTGAATAGA+AGG | - | 10365:9048-9067 | MS.gene98566:intergenic | 35.0% | |
| ATTAACCTCCACGAACATAA+TGG | - | 10365:8823-8842 | MS.gene98566:intergenic | 35.0% | |
| ATTATGTTCGTGGAGGTTAA+TGG | + | 10365:8822-8841 | MS.gene98566:intron | 35.0% | |
| ATTTACTCTGTTGCAACTGT+AGG | + | 10365:8971-8990 | MS.gene98566:intron | 35.0% | |
| CATCTTTATGTGTTTGTCAC+AGG | + | 10365:6029-6048 | MS.gene98566:intron | 35.0% | |
| CGACATATGTGGTTAACAAA+AGG | + | 10365:7116-7135 | MS.gene98566:CDS | 35.0% | |
| GAATCATGATGCATGATATG+GGG | + | 10365:8715-8734 | MS.gene98566:intron | 35.0% | |
| GAATCTGACAGATAAGAATG+TGG | + | 10365:7301-7320 | MS.gene98566:intron | 35.0% | |
| GACTGTTAAACCACAATGTT+AGG | + | 10365:5144-5163 | MS.gene98566:intron | 35.0% | |
| GCCTCATCTTTAAATGTACT+TGG | + | 10365:8369-8388 | MS.gene98566:intron | 35.0% | |
| GCGATTGTAGATATAGTCAT+AGG | + | 10365:5120-5139 | MS.gene98566:intron | 35.0% | |
| GGAAGAAAAGGACAATTTCA+AGG | + | 10365:6577-6596 | MS.gene98566:CDS | 35.0% | |
| GGACGATGACTAATATGATT+CGG | - | 10365:9177-9196 | MS.gene98566:intergenic | 35.0% | |
| GGAGAAGAAAGGTAAATGAT+GGG | + | 10365:5056-5075 | MS.gene98566:intron | 35.0% | |
| GGTCAATTGTATTCAGTTGA+TGG | + | 10365:7997-8016 | MS.gene98566:intron | 35.0% | |
| GTGAATCATGATGCATGATA+TGG | + | 10365:8713-8732 | MS.gene98566:intron | 35.0% | |
| GTGACAAACACATAAAGATG+AGG | - | 10365:6029-6048 | MS.gene98566:intergenic | 35.0% | |
| GTTTCATACCATTATGTTCG+TGG | + | 10365:8812-8831 | MS.gene98566:intron | 35.0% | |
| TAAGAATTTAGACACTGCTG+AGG | + | 10365:5035-5054 | MS.gene98566:CDS | 35.0% | |
| TACTACACCATGGTTAATCT+TGG | + | 10365:5391-5410 | MS.gene98566:intron | 35.0% | |
| TAGAGATCCAAGATTAACCA+TGG | - | 10365:5401-5420 | MS.gene98566:intergenic | 35.0% | |
| TATTCTGCTGTTCAAGTAAC+CGG | + | 10365:9213-9232 | MS.gene98566:CDS | 35.0% | |
| TGAACAGCAGAATAATGCTT+GGG | - | 10365:9207-9226 | MS.gene98566:intergenic | 35.0% | |
| TTAATGTTGTTGAAGGACTG+AGG | + | 10365:6482-6501 | MS.gene98566:CDS | 35.0% | |
| TTAGTTGAGTCCCTAGTATT+AGG | + | 10365:8322-8341 | MS.gene98566:intron | 35.0% | |
| TTCATACACCATGTGCTTAT+AGG | + | 10365:6138-6157 | MS.gene98566:intron | 35.0% | |
| TTCATGGATGATGAAACACA+AGG | - | 10365:8508-8527 | MS.gene98566:intergenic | 35.0% | |
| TTGAACAGCAGAATAATGCT+TGG | - | 10365:9208-9227 | MS.gene98566:intergenic | 35.0% | |
| TTTCACTAAATCGCATATCG+CGG | - | 10365:5282-5301 | MS.gene98566:intergenic | 35.0% | |
| ! | ACTGAATGTGACATGACTTT+TGG | + | 10365:7605-7624 | MS.gene98566:CDS | 35.0% |
| ! | ATATGATTCGGAGATCTGTT+TGG | - | 10365:9165-9184 | MS.gene98566:intergenic | 35.0% |
| ! | CTGAATGTGACATGACTTTT+GGG | + | 10365:7606-7625 | MS.gene98566:CDS | 35.0% |
| ! | CTTCAGGTTAATGTTGTTGA+AGG | + | 10365:6475-6494 | MS.gene98566:intron | 35.0% |
| ! | GAAGGGAATTTTGTGGTTAA+AGG | + | 10365:4949-4968 | MS.gene98566:CDS | 35.0% |
| ! | TACAAAAGTTTTTCCTGTGG+TGG | - | 10365:6309-6328 | MS.gene98566:intergenic | 35.0% |
| ! | TGCTACAAAAGTTTTTCCTG+TGG | - | 10365:6312-6331 | MS.gene98566:intergenic | 35.0% |
| !! | CATCGTCGATTTCTATAATG+AGG | + | 10365:7403-7422 | MS.gene98566:CDS | 35.0% |
| !! | GTACAAGAGTATCAGTATGA+TGG | - | 10365:6225-6244 | MS.gene98566:intergenic | 35.0% |
| !! | GTGAAAGTGTTGTCAAATAG+CGG | + | 10365:5296-5315 | MS.gene98566:intron | 35.0% |
| !!! | ACTATTTTTAGCAGGCCAAA+AGG | - | 10365:5616-5635 | MS.gene98566:intergenic | 35.0% |
| !!! | GCAACATTTTGAAACTTAGG+GGG | - | 10365:7043-7062 | MS.gene98566:intergenic | 35.0% |
| !!! | GGCATCTGTTTTTAATCTTC+AGG | + | 10365:6459-6478 | MS.gene98566:intron | 35.0% |
| !!! | TGAGTCGTGGTTTTAAATTG+CGG | + | 10365:5095-5114 | MS.gene98566:intron | 35.0% |
| !!! | TGATTTTAATTGCAGTCAGG+TGG | - | 10365:5533-5552 | MS.gene98566:intergenic | 35.0% |
| !!! | TGTTCGATTATTTTGAGTCG+TGG | + | 10365:5082-5101 | MS.gene98566:intron | 35.0% |
| AACAATGGCTGCATGCTATT+AGG | - | 10365:9270-9289 | MS.gene98566:intergenic | 40.0% | |
| AACATTTGGCCGTCTTCATT+TGG | + | 10365:7557-7576 | MS.gene98566:CDS | 40.0% | |
| AAGTCATGTCACATTCAGTC+AGG | - | 10365:7604-7623 | MS.gene98566:intergenic | 40.0% | |
| AATCAACAACAGAACGTGAG+TGG | + | 10365:6281-6300 | MS.gene98566:CDS | 40.0% | |
| AATCGCATATCGCGGAATAA+CGG | - | 10365:5274-5293 | MS.gene98566:intergenic | 40.0% | |
| AATGAAGACGGCCAAATGTT+TGG | - | 10365:7557-7576 | MS.gene98566:intergenic | 40.0% | |
| AATTGTATGGGAGTTGCAAC+TGG | - | 10365:9303-9322 | MS.gene98566:intergenic | 40.0% | |
| ACTCTCTTCCTATAAGCACA+TGG | - | 10365:6149-6168 | MS.gene98566:intergenic | 40.0% | |
| AGCAAGTAATGTTCGGACTT+TGG | + | 10365:5995-6014 | MS.gene98566:intron | 40.0% | |
| AGCAATGTCAAGCTTTCTCT+TGG | + | 10365:7665-7684 | MS.gene98566:CDS | 40.0% | |
| ATGTTTGATGGGAAGATGGT+AGG | + | 10365:6337-6356 | MS.gene98566:intron | 40.0% | |
| ATTCTGCTGTTCAAGTAACC+GGG | + | 10365:9214-9233 | MS.gene98566:CDS | 40.0% | |
| ATTTCCCTTGCATCACTAGA+AGG | - | 10365:8999-9018 | MS.gene98566:intergenic | 40.0% | |
| CACAGGTGTAGCAAATTGTA+TGG | - | 10365:9316-9335 | MS.gene98566:intergenic | 40.0% | |
| CGCCGCTATTTGAAAATACT+GGG | - | 10365:5222-5241 | MS.gene98566:intergenic | 40.0% | |
| GAATAATGCTTGGGAGCTAA+CGG | - | 10365:9198-9217 | MS.gene98566:intergenic | 40.0% | |
| GAATGTGCATCAAATTCTGG+AGG | + | 10365:5793-5812 | MS.gene98566:CDS | 40.0% | |
| GCTATTAGGAGCAACATGTA+GGG | - | 10365:9256-9275 | MS.gene98566:intergenic | 40.0% | |
| GGAAGAGAGATGATTCAGTT+GGG | + | 10365:7154-7173 | MS.gene98566:CDS | 40.0% | |
| GTAGCAACGAGATGTTTGAT+GGG | + | 10365:6326-6345 | MS.gene98566:intron | 40.0% | |
| GTATGAAAGCTAGCAAGCAA+GGG | - | 10365:6125-6144 | MS.gene98566:intergenic | 40.0% | |
| GTCAATGATTTAAGGGTTGC+TGG | + | 10365:6556-6575 | MS.gene98566:CDS | 40.0% | |
| GTTAAATCTGGTGGCAAAGT+TGG | + | 10365:5000-5019 | MS.gene98566:CDS | 40.0% | |
| GTTAACAAAAGGCCCATAAG+AGG | + | 10365:7127-7146 | MS.gene98566:CDS | 40.0% | |
| TAGGAAGAGAGTCACCTTAT+AGG | + | 10365:6157-6176 | MS.gene98566:intron | 40.0% | |
| TATGCAATGGTCAATGTGTG+TGG | + | 10365:6701-6720 | MS.gene98566:intron | 40.0% | |
| TCAAGATATCATTGAGCGCA+TGG | + | 10365:7343-7362 | MS.gene98566:CDS | 40.0% | |
| TCATACCATTATGTTCGTGG+AGG | + | 10365:8815-8834 | MS.gene98566:intron | 40.0% | |
| TCTCTTCCATGTCCTCTTAT+GGG | - | 10365:7142-7161 | MS.gene98566:intergenic | 40.0% | |
| TGAAACACAAGGTCTCTTCA+TGG | - | 10365:8497-8516 | MS.gene98566:intergenic | 40.0% | |
| TGAGTCCCTAGTATTAGGTA+GGG | + | 10365:8327-8346 | MS.gene98566:intron | 40.0% | |
| TGCTATTAGGAGCAACATGT+AGG | - | 10365:9257-9276 | MS.gene98566:intergenic | 40.0% | |
| TGGAAGAGAGATGATTCAGT+TGG | + | 10365:7153-7172 | MS.gene98566:CDS | 40.0% | |
| TGGTGGCAAAGTTGGATATA+AGG | + | 10365:5008-5027 | MS.gene98566:CDS | 40.0% | |
| TGTAGCAACGAGATGTTTGA+TGG | + | 10365:6325-6344 | MS.gene98566:intron | 40.0% | |
| TGTATGAAAGCTAGCAAGCA+AGG | - | 10365:6126-6145 | MS.gene98566:intergenic | 40.0% | |
| TGTTGTCAAATAGCGGCTAT+AGG | + | 10365:5303-5322 | MS.gene98566:intron | 40.0% | |
| TTAAGGGTTGCTGGAAGAAA+AGG | + | 10365:6565-6584 | MS.gene98566:CDS | 40.0% | |
| TTCGATCGTTACTCGATACT+AGG | + | 10365:8770-8789 | MS.gene98566:intron | 40.0% | |
| TTGAGTCCCTAGTATTAGGT+AGG | + | 10365:8326-8345 | MS.gene98566:intron | 40.0% | |
| TTTCCCTTGCATCACTAGAA+GGG | - | 10365:8998-9017 | MS.gene98566:intergenic | 40.0% | |
| ! | ACATTTGTCTCAGAGCACTT+TGG | + | 10365:7632-7651 | MS.gene98566:CDS | 40.0% |
| ! | ATGGTGCCAATTACGTTTAG+TGG | - | 10365:8061-8080 | MS.gene98566:intergenic | 40.0% |
| ! | ATGGTGTTAGTTACGCTTAG+TGG | - | 10365:8146-8165 | MS.gene98566:intergenic | 40.0% |
| ! | ATTTGTCTCAGAGCACTTTG+GGG | + | 10365:7634-7653 | MS.gene98566:CDS | 40.0% |
| ! | CATTTGTCTCAGAGCACTTT+GGG | + | 10365:7633-7652 | MS.gene98566:CDS | 40.0% |
| ! | CTTAACAGACATGACTTGTG+AGG | - | 10365:7372-7391 | MS.gene98566:intergenic | 40.0% |
| ! | GTCAGGAAAAGCGTATAAAC+AGG | - | 10365:7587-7606 | MS.gene98566:intergenic | 40.0% |
| !! | AAGAGCTCTGGAAATTCTCA+AGG | + | 10365:5754-5773 | MS.gene98566:CDS | 40.0% |
| !! | ATGTAGTTTGCTGTGAAGAC+TGG | + | 10365:6184-6203 | MS.gene98566:intron | 40.0% |
| !! | TTTTTAGCAGGCCAAAAGGT+CGG | - | 10365:5612-5631 | MS.gene98566:intergenic | 40.0% |
| !!! | TCACTTGGCAGAGACTTTTT+TGG | - | 10365:9096-9115 | MS.gene98566:intergenic | 40.0% |
| AAAAGGCCCATAAGAGGACA+TGG | + | 10365:7133-7152 | MS.gene98566:CDS | 45.0% | |
| AAATCGACGATGCAAGCATC+AGG | - | 10365:7395-7414 | MS.gene98566:intergenic | 45.0% | |
| AATGTGACAGCGTCGTTCAA+AGG | + | 10365:7199-7218 | MS.gene98566:CDS | 45.0% | |
| ACAGGCCTTCCAAATGAAGA+CGG | - | 10365:7569-7588 | MS.gene98566:intergenic | 45.0% | |
| ACATTGTCCACGTCAGCAAT+TGG | - | 10365:7184-7203 | MS.gene98566:intergenic | 45.0% | |
| ACCACTCAACGCCAAACATT+TGG | + | 10365:7543-7562 | MS.gene98566:CDS | 45.0% | |
| ACTGTGTGACCCTAACATTG+TGG | - | 10365:5157-5176 | MS.gene98566:intergenic | 45.0% | |
| AGAAATCATCGTCGTGGTGA+AGG | + | 10365:4931-4950 | MS.gene98566:CDS | 45.0% | |
| CGAGATGTTTGATGGGAAGA+TGG | + | 10365:6333-6352 | MS.gene98566:intron | 45.0% | |
| CGTTGAACACCAGAAAGTCA+TGG | - | 10365:7906-7925 | MS.gene98566:intergenic | 45.0% | |
| CTCTCTTCCATGTCCTCTTA+TGG | - | 10365:7143-7162 | MS.gene98566:intergenic | 45.0% | |
| GAAATCATCGTCGTGGTGAA+GGG | + | 10365:4932-4951 | MS.gene98566:CDS | 45.0% | |
| GACCAATGTGAAGTTGCTGA+CGG | - | 10365:9135-9154 | MS.gene98566:intergenic | 45.0% | |
| GCGCCGCTATTTGAAAATAC+TGG | - | 10365:5223-5242 | MS.gene98566:intergenic | 45.0% | |
| GGCTATAGGCTGTGAAATTG+CGG | + | 10365:5317-5336 | MS.gene98566:intron | 45.0% | |
| GGGTGAGTACATGGGAAATT+TGG | + | 10365:7462-7481 | MS.gene98566:intron | 45.0% | |
| GTGTGTGGCAAACACTTGAT+AGG | + | 10365:6716-6735 | MS.gene98566:intron | 45.0% | |
| TCAAGCTTTCTCTTGGACCT+GGG | + | 10365:7672-7691 | MS.gene98566:CDS | 45.0% | |
| TGCAATTCGGAGACCATTGT+AGG | + | 10365:5507-5526 | MS.gene98566:intron | 45.0% | |
| TTAGGAGCAACATGTAGGGA+TGG | - | 10365:9252-9271 | MS.gene98566:intergenic | 45.0% | |
| TTCTGCTGTTCAAGTAACCG+GGG | + | 10365:9215-9234 | MS.gene98566:CDS | 45.0% | |
| TTTGGCCGTCTTCATTTGGA+AGG | + | 10365:7561-7580 | MS.gene98566:CDS | 45.0% | |
| ! | ATACACGACTTCCGACCTTT+TGG | + | 10365:5598-5617 | MS.gene98566:intron | 45.0% |
| ! | ATTCGGAGATCTGTTTGGTG+CGG | - | 10365:9160-9179 | MS.gene98566:intergenic | 45.0% |
| ! | TCGTGGTGAAGGGAATTTTG+TGG | + | 10365:4942-4961 | MS.gene98566:CDS | 45.0% |
| !!! | ATCTTTTATATTTTATTTTA+TGG | + | 10365:6436-6455 | MS.gene98566:intron | 5.0% |
| !!! | TCTTTTATATTTTATTTTAT+GGG | + | 10365:6437-6456 | MS.gene98566:intron | 5.0% |
| AACAGGGAGTCCGACATATG+TGG | + | 10365:7105-7124 | MS.gene98566:intron | 50.0% | |
| AGGTCCCTTCTAGTGATGCA+AGG | + | 10365:8991-9010 | MS.gene98566:intron | 50.0% | |
| CAAGGTCTCTTCATGGTGCA+TGG | - | 10365:8490-8509 | MS.gene98566:intergenic | 50.0% | |
| CTCCGTCAGCAACTTCACAT+TGG | + | 10365:9130-9149 | MS.gene98566:CDS | 50.0% | |
| GACACTGCTGAGGAGAAGAA+AGG | + | 10365:5045-5064 | MS.gene98566:CDS | 50.0% | |
| GCAAGACCTTGAGCATCACT+TGG | - | 10365:9111-9130 | MS.gene98566:intergenic | 50.0% | |
| GGTCCCTTCTAGTGATGCAA+GGG | + | 10365:8992-9011 | MS.gene98566:intron | 50.0% | |
| GTCAAGCTTTCTCTTGGACC+TGG | + | 10365:7671-7690 | MS.gene98566:CDS | 50.0% | |
| TCTCTGCCAAGTGATGCTCA+AGG | + | 10365:9102-9121 | MS.gene98566:CDS | 50.0% | |
| TTGGAAGGGGGTGAGTACAT+GGG | + | 10365:7454-7473 | MS.gene98566:intron | 50.0% | |
| TTTGGAAGGGGGTGAGTACA+TGG | + | 10365:7453-7472 | MS.gene98566:intron | 50.0% | |
| ! | GCCAAATGTTTGGCGTTGAG+TGG | - | 10365:7547-7566 | MS.gene98566:intergenic | 50.0% |
| !! | GATGGCCTTTTGAAGAGCTC+TGG | + | 10365:5742-5761 | MS.gene98566:CDS | 50.0% |
| !! | TTCGGAGATCTGTTTGGTGC+GGG | - | 10365:9159-9178 | MS.gene98566:intergenic | 50.0% |
| AACGTGAGTGGTTCCACCAC+AGG | + | 10365:6293-6312 | MS.gene98566:CDS | 55.0% | |
| GCAACATGTAGGGATGGAGC+CGG | - | 10365:9246-9265 | MS.gene98566:intergenic | 55.0% | |
| GGGTGTTCCAATTGCTGACG+TGG | + | 10365:7174-7193 | MS.gene98566:CDS | 55.0% | |
| TGACAGCGTCGTTCAAAGGC+AGG | + | 10365:7203-7222 | MS.gene98566:intron | 55.0% | |
| TGCAGTCAGGTGGCCTACAA+TGG | - | 10365:5523-5542 | MS.gene98566:intergenic | 55.0% | |
| ! | ACTGGCGCTGGGACAAACAA+TGG | - | 10365:9285-9304 | MS.gene98566:intergenic | 55.0% |
| ATGGGAGTTGCAACTGGCGC+TGG | - | 10365:9297-9316 | MS.gene98566:intergenic | 60.0% | |
| GTCCATCCTGTAGAGCCAGG+CGG | - | 10365:9345-9364 | MS.gene98566:intergenic | 60.0% | |
| TCCATCCTGTAGAGCCAGGC+GGG | - | 10365:9344-9363 | MS.gene98566:intergenic | 60.0% | |
| TGGGAGTTGCAACTGGCGCT+GGG | - | 10365:9296-9315 | MS.gene98566:intergenic | 60.0% | |
| !! | TCAAGTAACCGGGGTGCTGC+CGG | + | 10365:9224-9243 | MS.gene98566:CDS | 60.0% |
| ACACCTGTGCCAATCCCGCC+TGG | + | 10365:9327-9346 | MS.gene98566:CDS | 65.0% | |
| CCTGTAGAGCCAGGCGGGAT+TGG | - | 10365:9339-9358 | MS.gene98566:intergenic | 65.0% | |
| !! | CCAATCCCGCCTGGCTCTAC+AGG | + | 10365:9336-9355 | MS.gene98566:CDS | 65.0% |
| !! | TCCCGCCTGGCTCTACAGGA+TGG | + | 10365:9340-9359 | MS.gene98566:CDS | 65.0% |
| ! | GAGCCAGGCGGGATTGGCAC+AGG | - | 10365:9333-9352 | MS.gene98566:intergenic | 70.0% |
| GGATGGAGCCGGCAGCACCC+CGG | - | 10365:9235-9254 | MS.gene98566:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 10365 | gene | 4928 | 9365 | 4928 | ID=MS.gene98566 |
| 10365 | mRNA | 4928 | 9365 | 4928 | ID=MS.gene98566.t1;Parent=MS.gene98566 |
| 10365 | exon | 4928 | 5066 | 4928 | ID=MS.gene98566.t1.exon1;Parent=MS.gene98566.t1 |
| 10365 | CDS | 4928 | 5066 | 4928 | ID=cds.MS.gene98566.t1;Parent=MS.gene98566.t1 |
| 10365 | exon | 5719 | 5814 | 5719 | ID=MS.gene98566.t1.exon2;Parent=MS.gene98566.t1 |
| 10365 | CDS | 5719 | 5814 | 5719 | ID=cds.MS.gene98566.t1;Parent=MS.gene98566.t1 |
| 10365 | exon | 6258 | 6325 | 6258 | ID=MS.gene98566.t1.exon3;Parent=MS.gene98566.t1 |
| 10365 | CDS | 6258 | 6325 | 6258 | ID=cds.MS.gene98566.t1;Parent=MS.gene98566.t1 |
| 10365 | exon | 6481 | 6598 | 6481 | ID=MS.gene98566.t1.exon4;Parent=MS.gene98566.t1 |
| 10365 | CDS | 6481 | 6598 | 6481 | ID=cds.MS.gene98566.t1;Parent=MS.gene98566.t1 |
| 10365 | exon | 7110 | 7220 | 7110 | ID=MS.gene98566.t1.exon5;Parent=MS.gene98566.t1 |
| 10365 | CDS | 7110 | 7220 | 7110 | ID=cds.MS.gene98566.t1;Parent=MS.gene98566.t1 |
| 10365 | exon | 7312 | 7424 | 7312 | ID=MS.gene98566.t1.exon6;Parent=MS.gene98566.t1 |
| 10365 | CDS | 7312 | 7424 | 7312 | ID=cds.MS.gene98566.t1;Parent=MS.gene98566.t1 |
| 10365 | exon | 7539 | 7693 | 7539 | ID=MS.gene98566.t1.exon7;Parent=MS.gene98566.t1 |
| 10365 | CDS | 7539 | 7693 | 7539 | ID=cds.MS.gene98566.t1;Parent=MS.gene98566.t1 |
| 10365 | exon | 8993 | 9365 | 8993 | ID=MS.gene98566.t1.exon8;Parent=MS.gene98566.t1 |
| 10365 | CDS | 8993 | 9365 | 8993 | ID=cds.MS.gene98566.t1;Parent=MS.gene98566.t1 |
| Gene Sequence |
| Protein sequence |
