Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05880.t1 | XP_024629644.1 | 98.4 | 310 | 5 | 0 | 21 | 330 | 26 | 335 | 5.90E-78 | 301.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05880.t1 | Q84WJ9 | 79.4 | 310 | 64 | 0 | 21 | 330 | 19 | 328 | 4.6e-55 | 216.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05880.t1 | G7L846 | 98.4 | 310 | 5 | 0 | 21 | 330 | 26 | 335 | 4.2e-78 | 301.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049166 | MS.gene05880 | 0.802814 | 4.69E-49 | -1.69E-46 |
| MS.gene050114 | MS.gene05880 | 0.80804 | 3.77E-50 | -1.69E-46 |
| MS.gene050838 | MS.gene05880 | 0.827359 | 1.63E-54 | -1.69E-46 |
| MS.gene051850 | MS.gene05880 | 0.800318 | 1.52E-48 | -1.69E-46 |
| MS.gene051885 | MS.gene05880 | 0.813503 | 2.48E-51 | -1.69E-46 |
| MS.gene057094 | MS.gene05880 | 0.838788 | 2.33E-57 | -1.69E-46 |
| MS.gene058639 | MS.gene05880 | 0.800079 | 1.71E-48 | -1.69E-46 |
| MS.gene05880 | MS.gene059171 | 0.804255 | 2.36E-49 | -1.69E-46 |
| MS.gene05880 | MS.gene06117 | 0.811391 | 7.17E-51 | -1.69E-46 |
| MS.gene05880 | MS.gene061898 | 0.835953 | 1.24E-56 | -1.69E-46 |
| MS.gene05880 | MS.gene063817 | 0.807287 | 5.44E-50 | -1.69E-46 |
| MS.gene05880 | MS.gene067773 | 0.822151 | 2.76E-53 | -1.69E-46 |
| MS.gene05880 | MS.gene067938 | 0.82792 | 1.20E-54 | -1.69E-46 |
| MS.gene05880 | MS.gene072328 | 0.812796 | 3.54E-51 | -1.69E-46 |
| MS.gene05880 | MS.gene072329 | 0.806283 | 8.87E-50 | -1.69E-46 |
| MS.gene05880 | MS.gene072641 | 0.821012 | 5.06E-53 | -1.69E-46 |
| MS.gene05880 | MS.gene072905 | 0.822137 | 2.78E-53 | -1.69E-46 |
| MS.gene05880 | MS.gene072969 | 0.840037 | 1.11E-57 | -1.69E-46 |
| MS.gene05880 | MS.gene07339 | 0.801889 | 7.28E-49 | -1.69E-46 |
| MS.gene05880 | MS.gene07608 | 0.813121 | 3.01E-51 | -1.69E-46 |
| MS.gene05880 | MS.gene08769 | 0.802846 | 4.62E-49 | -1.69E-46 |
| MS.gene05880 | MS.gene08793 | 0.800226 | 1.59E-48 | -1.69E-46 |
| MS.gene05880 | MS.gene09297 | 0.80255 | 5.32E-49 | -1.69E-46 |
| MS.gene05880 | MS.gene09852 | 0.801895 | 7.26E-49 | -1.69E-46 |
| MS.gene05880 | MS.gene20056 | 0.819755 | 9.83E-53 | -1.69E-46 |
| MS.gene05880 | MS.gene20202 | 0.822525 | 2.26E-53 | -1.69E-46 |
| MS.gene05880 | MS.gene20886 | 0.801347 | 9.40E-49 | -1.69E-46 |
| MS.gene05880 | MS.gene26426 | 0.822731 | 2.02E-53 | -1.69E-46 |
| MS.gene05880 | MS.gene26974 | 0.804627 | 1.97E-49 | -1.69E-46 |
| MS.gene05880 | MS.gene27773 | 0.819991 | 8.68E-53 | -1.69E-46 |
| MS.gene05880 | MS.gene28159 | 0.828113 | 1.08E-54 | -1.69E-46 |
| MS.gene05880 | MS.gene28632 | 0.821573 | 3.76E-53 | -1.69E-46 |
| MS.gene05880 | MS.gene29047 | 0.806652 | 7.41E-50 | -1.69E-46 |
| MS.gene05880 | MS.gene29355 | 0.819194 | 1.32E-52 | -1.69E-46 |
| MS.gene05880 | MS.gene29719 | 0.812398 | 4.32E-51 | -1.69E-46 |
| MS.gene05880 | MS.gene30419 | 0.801872 | 7.34E-49 | -1.69E-46 |
| MS.gene05880 | MS.gene32620 | 0.836887 | 7.19E-57 | -1.69E-46 |
| MS.gene05880 | MS.gene36627 | 0.80056 | 1.36E-48 | -1.69E-46 |
| MS.gene05880 | MS.gene38070 | 0.868753 | 5.16E-66 | -1.69E-46 |
| MS.gene05880 | MS.gene38190 | 0.841237 | 5.37E-58 | -1.69E-46 |
| MS.gene05880 | MS.gene38262 | 0.834517 | 2.86E-56 | -1.69E-46 |
| MS.gene05880 | MS.gene41088 | 0.812638 | 3.83E-51 | -1.69E-46 |
| MS.gene05880 | MS.gene41692 | 0.803971 | 2.70E-49 | -1.69E-46 |
| MS.gene05880 | MS.gene42377 | 0.814224 | 1.72E-51 | -1.69E-46 |
| MS.gene05880 | MS.gene42649 | 0.826072 | 3.32E-54 | -1.69E-46 |
| MS.gene05880 | MS.gene43113 | 0.832444 | 9.42E-56 | -1.69E-46 |
| MS.gene05880 | MS.gene43961 | 0.815776 | 7.77E-52 | -1.69E-46 |
| MS.gene05880 | MS.gene45785 | 0.819515 | 1.12E-52 | -1.69E-46 |
| MS.gene05880 | MS.gene46302 | 0.832038 | 1.19E-55 | -1.69E-46 |
| MS.gene05880 | MS.gene47554 | 0.81441 | 1.56E-51 | -1.69E-46 |
| MS.gene05880 | MS.gene47985 | 0.828878 | 7.04E-55 | -1.69E-46 |
| MS.gene05880 | MS.gene48283 | 0.808965 | 2.39E-50 | -1.69E-46 |
| MS.gene05880 | MS.gene49315 | 0.813638 | 2.31E-51 | -1.69E-46 |
| MS.gene05880 | MS.gene49777 | 0.832148 | 1.11E-55 | -1.69E-46 |
| MS.gene05880 | MS.gene52973 | 0.806166 | 9.39E-50 | -1.69E-46 |
| MS.gene05880 | MS.gene53600 | 0.819156 | 1.35E-52 | -1.69E-46 |
| MS.gene05880 | MS.gene54547 | 0.801426 | 9.05E-49 | -1.69E-46 |
| MS.gene05880 | MS.gene55836 | 0.810338 | 1.21E-50 | -1.69E-46 |
| MS.gene05880 | MS.gene56127 | 0.823578 | 1.28E-53 | -1.69E-46 |
| MS.gene05880 | MS.gene56476 | 0.811474 | 6.87E-51 | -1.69E-46 |
| MS.gene05880 | MS.gene57348 | 0.822631 | 2.14E-53 | -1.69E-46 |
| MS.gene05880 | MS.gene58098 | 0.807632 | 4.60E-50 | -1.69E-46 |
| MS.gene05880 | MS.gene59351 | 0.817903 | 2.59E-52 | -1.69E-46 |
| MS.gene05880 | MS.gene60750 | 0.846963 | 1.56E-59 | -1.69E-46 |
| MS.gene05880 | MS.gene61117 | 0.809466 | 1.87E-50 | -1.69E-46 |
| MS.gene05880 | MS.gene66119 | 0.802552 | 5.31E-49 | -1.69E-46 |
| MS.gene05880 | MS.gene67107 | 0.817977 | 2.49E-52 | -1.69E-46 |
| MS.gene05880 | MS.gene67881 | 0.840118 | 1.05E-57 | -1.69E-46 |
| MS.gene05880 | MS.gene68106 | 0.808705 | 2.72E-50 | -1.69E-46 |
| MS.gene05880 | MS.gene69373 | 0.832403 | 9.64E-56 | -1.69E-46 |
| MS.gene05880 | MS.gene70175 | 0.802248 | 6.14E-49 | -1.69E-46 |
| MS.gene05880 | MS.gene70305 | 0.81326 | 2.80E-51 | -1.69E-46 |
| MS.gene05880 | MS.gene70530 | 0.813675 | 2.27E-51 | -1.69E-46 |
| MS.gene05880 | MS.gene70596 | 0.800455 | 1.43E-48 | -1.69E-46 |
| MS.gene05880 | MS.gene74900 | 0.827856 | 1.24E-54 | -1.69E-46 |
| MS.gene05880 | MS.gene76440 | 0.809357 | 1.97E-50 | -1.69E-46 |
| MS.gene05880 | MS.gene76478 | 0.800297 | 1.54E-48 | -1.69E-46 |
| MS.gene05880 | MS.gene81208 | 0.802041 | 6.77E-49 | -1.69E-46 |
| MS.gene05880 | MS.gene81280 | 0.806703 | 7.23E-50 | -1.69E-46 |
| MS.gene05880 | MS.gene81288 | 0.83021 | 3.34E-55 | -1.69E-46 |
| MS.gene05880 | MS.gene82375 | 0.804607 | 1.99E-49 | -1.69E-46 |
| MS.gene05880 | MS.gene86064 | 0.807239 | 5.57E-50 | -1.69E-46 |
| MS.gene05880 | MS.gene86822 | 0.820908 | 5.35E-53 | -1.69E-46 |
| MS.gene05880 | MS.gene86937 | 0.807843 | 4.15E-50 | -1.69E-46 |
| MS.gene05880 | MS.gene87972 | 0.80842 | 3.12E-50 | -1.69E-46 |
| MS.gene05880 | MS.gene88427 | 0.817157 | 3.81E-52 | -1.69E-46 |
| MS.gene05880 | MS.gene88859 | 0.848431 | 6.16E-60 | -1.69E-46 |
| MS.gene05880 | MS.gene89570 | 0.831151 | 1.96E-55 | -1.69E-46 |
| MS.gene05880 | MS.gene91524 | 0.80166 | 8.11E-49 | -1.69E-46 |
| MS.gene05880 | MS.gene94183 | 0.801069 | 1.07E-48 | -1.69E-46 |
| MS.gene05880 | MS.gene98566 | 0.800618 | 1.32E-48 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05880.t1 | MTR_8g102770 | 97.576 | 330 | 7 | 1 | 1 | 330 | 7 | 335 | 0.0 | 644 |
| MS.gene05880.t1 | MTR_2g086950 | 29.771 | 262 | 143 | 7 | 64 | 294 | 1 | 252 | 1.99e-14 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05880.t1 | AT5G19680 | 77.707 | 314 | 70 | 0 | 17 | 330 | 15 | 328 | 2.08e-179 | 499 |
| MS.gene05880.t1 | AT5G22320 | 29.268 | 246 | 142 | 6 | 72 | 287 | 2 | 245 | 7.32e-11 | 63.5 |
Find 69 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCTTCGATTGATTCTATT+TGG | 0.180392 | 4.4:+3392342 | None:intergenic |
| ATGTTCAATCTCCTCAATTT+TGG | 0.205248 | 4.4:+3394256 | None:intergenic |
| CGACGAATCATCAACCTTAT+TGG | 0.224346 | 4.4:-3394738 | MS.gene05880:CDS |
| CCGTCGTTCCTCTCTCTTCC+TGG | 0.241921 | 4.4:-3394550 | MS.gene05880:CDS |
| TCACAATGGTATCACTAAAA+TGG | 0.268063 | 4.4:-3392569 | MS.gene05880:CDS |
| GAGAGAGGAGAGGGTGTTCC+AGG | 0.304542 | 4.4:+3394532 | None:intergenic |
| GCAGACCCTGGTGAATTTGC+AGG | 0.321077 | 4.4:-3394082 | MS.gene05880:CDS |
| AACTCGGTTCCAACAAATTA+CGG | 0.328564 | 4.4:-3394211 | MS.gene05880:CDS |
| CGACGGCAGCGTCGGTGATT+AGG | 0.333569 | 4.4:+3394567 | None:intergenic |
| GAATCAATTTGTTGAATGTT+GGG | 0.345226 | 4.4:+3391791 | None:intergenic |
| AAGCATATTTAAGAAGCTTT+TGG | 0.349027 | 4.4:-3394375 | MS.gene05880:CDS |
| CCTTAGGATGGCAGTATAGT+TGG | 0.355765 | 4.4:+3391823 | None:intergenic |
| TTAACTAACCCGTAATTTGT+TGG | 0.363726 | 4.4:+3394202 | None:intergenic |
| AATCGTCTTACTTCGATGAT+AGG | 0.364815 | 4.4:-3393979 | MS.gene05880:CDS |
| AGGAATAAACATACTGTGTT+AGG | 0.379864 | 4.4:+3392467 | None:intergenic |
| TGGTGAATTTGCAGGAGTTA+TGG | 0.389196 | 4.4:-3394074 | MS.gene05880:CDS |
| AGAATCAATTTGTTGAATGT+TGG | 0.391281 | 4.4:+3391790 | None:intergenic |
| AACTACAACGGCTACAGATC+TGG | 0.393082 | 4.4:-3394765 | MS.gene05880:CDS |
| ATTGCAGATTAGAAGATTTG+TGG | 0.408097 | 4.4:-3392376 | MS.gene05880:intron |
| CTTCGTTACATGGTGTGGCT+AGG | 0.408654 | 4.4:-3394325 | MS.gene05880:CDS |
| TTCTTAAATATGCTTACATC+AGG | 0.411181 | 4.4:+3394383 | None:intergenic |
| AACGAAATTGCTTCGTTACA+TGG | 0.421794 | 4.4:-3394335 | MS.gene05880:CDS |
| TACTTCGATGATAGGATTTG+AGG | 0.426192 | 4.4:-3393971 | MS.gene05880:intron |
| TGTCATCTTTAGCCAATCTC+CGG | 0.426274 | 4.4:-3392540 | MS.gene05880:CDS |
| GTAACTGGTGAGATCCAATA+AGG | 0.442978 | 4.4:+3394724 | None:intergenic |
| TACATCTAAAACCCGGAGAT+TGG | 0.458207 | 4.4:+3392528 | None:intergenic |
| GAGATCGTGAAGCTGGTAAC+TGG | 0.459022 | 4.4:+3394709 | None:intergenic |
| TTCGTTACATGGTGTGGCTA+GGG | 0.464501 | 4.4:-3394324 | MS.gene05880:CDS |
| AGGTCTAACTCGGTGAGGTT+AGG | 0.467337 | 4.4:+3394668 | None:intergenic |
| CTTAGGATGGCAGTATAGTT+GGG | 0.467595 | 4.4:+3391824 | None:intergenic |
| ACTCGGTTCCAACAAATTAC+GGG | 0.472204 | 4.4:-3394210 | MS.gene05880:intron |
| GGATTTGCTGAGGCTGTCGC+TGG | 0.475973 | 4.4:-3392323 | MS.gene05880:CDS |
| CCAACTATACTGCCATCCTA+AGG | 0.497157 | 4.4:-3391823 | MS.gene05880:CDS |
| CTGAGTCGAGATCGTGAAGC+TGG | 0.502561 | 4.4:+3394702 | None:intergenic |
| TGTTGGGAAAGATTTCCCTT+AGG | 0.502654 | 4.4:+3391807 | None:intergenic |
| AATTTGCAGGAGTTATGGCT+TGG | 0.505707 | 4.4:-3394069 | MS.gene05880:CDS |
| ATTAAAGTTGTGAATCTATG+TGG | 0.507176 | 4.4:-3394036 | MS.gene05880:CDS |
| AAATGAAGTTACCAAAATTG+AGG | 0.544893 | 4.4:-3394267 | MS.gene05880:CDS |
| GTCGAGAGTGGATAAACGAT+TGG | 0.547251 | 4.4:+3394640 | None:intergenic |
| GGGAAAGATTTCCCTTAGGA+TGG | 0.548492 | 4.4:+3391811 | None:intergenic |
| CGGAGAGTTGGGCGATGCGA+GGG | 0.552820 | 4.4:+3394618 | None:intergenic |
| GTCATCTTTAGCCAATCTCC+GGG | 0.558464 | 4.4:-3392539 | MS.gene05880:CDS |
| AAGTACCTCGAGAGAGGAGA+GGG | 0.559541 | 4.4:+3394523 | None:intergenic |
| ATAACTCCTGCAAATTCACC+AGG | 0.560116 | 4.4:+3394076 | None:intergenic |
| TCTAACTCGGTGAGGTTAGG+AGG | 0.569923 | 4.4:+3394671 | None:intergenic |
| AATTGCTTCGTTACATGGTG+TGG | 0.573405 | 4.4:-3394330 | MS.gene05880:CDS |
| CAACTATACTGCCATCCTAA+GGG | 0.575726 | 4.4:-3391822 | MS.gene05880:CDS |
| GAGAGGAACGACGGCAGCGT+CGG | 0.580408 | 4.4:+3394559 | None:intergenic |
| AATGGTATCACTAAAATGGA+AGG | 0.580869 | 4.4:-3392565 | MS.gene05880:CDS |
| TCGGAGAGTTGGGCGATGCG+AGG | 0.590093 | 4.4:+3394617 | None:intergenic |
| TGGATAAACGATTGGCGGTG+AGG | 0.593257 | 4.4:+3394648 | None:intergenic |
| GGCGATGCGAGGGTCGAGAG+TGG | 0.600398 | 4.4:+3394628 | None:intergenic |
| GAGGGAAAGTACCTCGAGAG+AGG | 0.606087 | 4.4:+3394517 | None:intergenic |
| GAGAGTGGATAAACGATTGG+CGG | 0.606923 | 4.4:+3394643 | None:intergenic |
| ATCAAATAAGCTAACCTCTG+TGG | 0.608445 | 4.4:-3392503 | MS.gene05880:CDS |
| AAAGTACCTCGAGAGAGGAG+AGG | 0.625909 | 4.4:+3394522 | None:intergenic |
| CCAGGAAGAGAGAGGAACGA+CGG | 0.627554 | 4.4:+3394550 | None:intergenic |
| AACCAAATAGAATCAATCGA+AGG | 0.629752 | 4.4:-3392344 | MS.gene05880:CDS |
| GAACACCCTCTCCTCTCTCG+AGG | 0.637399 | 4.4:-3394528 | MS.gene05880:intron |
| GAACTATACTTGAGTCACAA+TGG | 0.639462 | 4.4:-3392583 | MS.gene05880:CDS |
| ATCAATCGAAGGATTTGCTG+AGG | 0.655166 | 4.4:-3392333 | MS.gene05880:CDS |
| ATCATCAACAACAACTACAA+CGG | 0.655788 | 4.4:-3394777 | MS.gene05880:CDS |
| TTGATGATACATCTAAAACC+CGG | 0.659966 | 4.4:+3392521 | None:intergenic |
| ATTGGCGGTGAGGTCTAACT+CGG | 0.662369 | 4.4:+3394658 | None:intergenic |
| CGGTGAGGTCTAACTCGGTG+AGG | 0.663976 | 4.4:+3394663 | None:intergenic |
| AGGGTGTTCCAGGAAGAGAG+AGG | 0.678547 | 4.4:+3394542 | None:intergenic |
| GATGGAGAATTTGCAGACCC+TGG | 0.702701 | 4.4:-3394094 | MS.gene05880:CDS |
| GTTATGAATGTCATCCACAG+AGG | 0.718539 | 4.4:+3392489 | None:intergenic |
| TAACTCCTGCAAATTCACCA+GGG | 0.734852 | 4.4:+3394077 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTTTTTTTTTTTTT+AGG | - | chr4.4:3392439-3392458 | MS.gene05880:intron | 0.0% |
| !! | TTATTAAAGAAAAATAAAGA+GGG | - | chr4.4:3393215-3393234 | MS.gene05880:intron | 10.0% |
| !! | TTTATTAAAGAAAAATAAAG+AGG | - | chr4.4:3393214-3393233 | MS.gene05880:intron | 10.0% |
| !! | AAATTTAAACATGAACATAT+GGG | - | chr4.4:3392969-3392988 | MS.gene05880:intron | 15.0% |
| !! | ATTACATTTAAGAATTGAAT+AGG | - | chr4.4:3392632-3392651 | MS.gene05880:intron | 15.0% |
| !! | ATTATAAATACAATAGCAAA+AGG | + | chr4.4:3392409-3392428 | None:intergenic | 15.0% |
| !! | TAAATTTAAACATGAACATA+TGG | - | chr4.4:3392968-3392987 | MS.gene05880:intron | 15.0% |
| !! | TTAAATGTTGTATACTATAT+TGG | - | chr4.4:3394597-3394616 | MS.gene05880:CDS | 15.0% |
| !!! | AAAATGTTTATTTAGAATGA+GGG | + | chr4.4:3394122-3394141 | None:intergenic | 15.0% |
| !!! | AATACTTGATAATAATACTT+TGG | - | chr4.4:3393674-3393693 | MS.gene05880:intron | 15.0% |
| !!! | TAGCTATATAACTATTTTAA+AGG | + | chr4.4:3392718-3392737 | None:intergenic | 15.0% |
| !!! | TTTTTTTATTATTCAGGAAT+TGG | - | chr4.4:3392122-3392141 | MS.gene05880:intron | 15.0% |
| !!! | TTTTTTTTTTTTTTAGGTGA+TGG | - | chr4.4:3392445-3392464 | MS.gene05880:intron | 15.0% |
| !! | AAACAAATTCAAATTACGAT+TGG | - | chr4.4:3392660-3392679 | MS.gene05880:intron | 20.0% |
| !! | AAATAGTAGTTATATATAGC+AGG | + | chr4.4:3393134-3393153 | None:intergenic | 20.0% |
| !! | AAATTATACTAGCGTATAAA+TGG | - | chr4.4:3392927-3392946 | MS.gene05880:intron | 20.0% |
| !! | ATGGAGAATTTCAAAATTAT+TGG | - | chr4.4:3392774-3392793 | MS.gene05880:intron | 20.0% |
| !! | GAGGAAAAAAAATGATTTAA+AGG | - | chr4.4:3393575-3393594 | MS.gene05880:intron | 20.0% |
| !! | TAAATAAAATCCATACACAA+AGG | + | chr4.4:3394299-3394318 | None:intergenic | 20.0% |
| !! | TTTATTGTATGAAAAGATAC+TGG | - | chr4.4:3392899-3392918 | MS.gene05880:intron | 20.0% |
| !! | TTTGAACTTATTGGTAAATA+GGG | - | chr4.4:3393865-3393884 | MS.gene05880:intron | 20.0% |
| !!! | ATTTATAGCTGATAACTTTT+TGG | - | chr4.4:3393926-3393945 | MS.gene05880:intron | 20.0% |
| !!! | ATTTTAAATGATCTTTCAAG+AGG | + | chr4.4:3393632-3393651 | None:intergenic | 20.0% |
| !!! | CATTCTAAATAAACATTTTC+CGG | - | chr4.4:3394123-3394142 | MS.gene05880:intron | 20.0% |
| !!! | GAAAATGTTTATTTAGAATG+AGG | + | chr4.4:3394123-3394142 | None:intergenic | 20.0% |
| ! | AAATGAAGTTACCAAAATTG+AGG | - | chr4.4:3392290-3392309 | MS.gene05880:CDS | 25.0% |
| ! | AATAAATCATCATTATGTCG+AGG | - | chr4.4:3393732-3393751 | MS.gene05880:intron | 25.0% |
| ! | ACAATGAAATTATCAACTCA+AGG | + | chr4.4:3394149-3394168 | None:intergenic | 25.0% |
| ! | ATGAACATATGGGAAAAATT+TGG | - | chr4.4:3392979-3392998 | MS.gene05880:intron | 25.0% |
| ! | ATTAAAGTTGTGAATCTATG+TGG | - | chr4.4:3392521-3392540 | MS.gene05880:CDS | 25.0% |
| ! | ATTTCAATTTCAACCTTGTA+AGG | - | chr4.4:3393350-3393369 | MS.gene05880:intron | 25.0% |
| ! | CACTTGTAAAATCATTTGTT+TGG | - | chr4.4:3392853-3392872 | MS.gene05880:intron | 25.0% |
| ! | CATTTAAGAATTGAATAGGT+AGG | - | chr4.4:3392636-3392655 | MS.gene05880:intron | 25.0% |
| ! | CTCTAATTTCAATTGATGAA+TGG | + | chr4.4:3393834-3393853 | None:intergenic | 25.0% |
| ! | GAAAAATAAAGAGGGAAAAA+AGG | - | chr4.4:3393223-3393242 | MS.gene05880:intron | 25.0% |
| ! | GAAATTCTCCATATAATACA+GGG | + | chr4.4:3392766-3392785 | None:intergenic | 25.0% |
| ! | GTTTGAACTTATTGGTAAAT+AGG | - | chr4.4:3393864-3393883 | MS.gene05880:intron | 25.0% |
| ! | TAGAAAATAACCTTTGTGTA+TGG | - | chr4.4:3394286-3394305 | MS.gene05880:CDS | 25.0% |
| ! | TATTGGAAATTGTGAATACA+GGG | - | chr4.4:3392791-3392810 | MS.gene05880:intron | 25.0% |
| ! | TATTTATCACTCACTCAAAT+TGG | + | chr4.4:3393658-3393677 | None:intergenic | 25.0% |
| ! | TCATATCAATCTCAACTATA+AGG | - | chr4.4:3393060-3393079 | MS.gene05880:intron | 25.0% |
| ! | TGAAATTCTCCATATAATAC+AGG | + | chr4.4:3392767-3392786 | None:intergenic | 25.0% |
| ! | TTATTGGAAATTGTGAATAC+AGG | - | chr4.4:3392790-3392809 | MS.gene05880:intron | 25.0% |
| ! | TTCTTAAATATGCTTACATC+AGG | + | chr4.4:3392177-3392196 | None:intergenic | 25.0% |
| ! | TTGTAAAATCATTTGTTTGG+AGG | - | chr4.4:3392856-3392875 | MS.gene05880:intron | 25.0% |
| !! | AAGCATATTTAAGAAGCTTT+TGG | - | chr4.4:3392182-3392201 | MS.gene05880:intron | 25.0% |
| !! | ATGATGATTTATTTCTTGCT+TGG | + | chr4.4:3393725-3393744 | None:intergenic | 25.0% |
| !! | TTATTTCTTGCTTGGATATT+TGG | + | chr4.4:3393717-3393736 | None:intergenic | 25.0% |
| !! | TTTATTTAGAATGAGGGAAA+TGG | + | chr4.4:3394116-3394135 | None:intergenic | 25.0% |
| !! | TTTTCATCATTTGCAGATTT+TGG | - | chr4.4:3392323-3392342 | MS.gene05880:CDS | 25.0% |
| !!! | AAATATGCAGTGAAAGTATT+AGG | - | chr4.4:3393167-3393186 | MS.gene05880:intron | 25.0% |
| !!! | AAATTACGATTGGCTTAATA+TGG | - | chr4.4:3392670-3392689 | MS.gene05880:intron | 25.0% |
| !!! | AGAATCAATTTGTTGAATGT+TGG | + | chr4.4:3394770-3394789 | None:intergenic | 25.0% |
| !!! | ATACACAAAGGTTATTTTCT+AGG | + | chr4.4:3394287-3394306 | None:intergenic | 25.0% |
| !!! | GAATCAATTTGTTGAATGTT+GGG | + | chr4.4:3394769-3394788 | None:intergenic | 25.0% |
| AAAATGATGAGATTTACCAG+AGG | + | chr4.4:3393789-3393808 | None:intergenic | 30.0% | |
| AAACAAACGACTCTAAGTTA+AGG | + | chr4.4:3394575-3394594 | None:intergenic | 30.0% | |
| AAATTGTGAATACAGGGAAT+AGG | - | chr4.4:3392797-3392816 | MS.gene05880:intron | 30.0% | |
| AACCAAATAGAATCAATCGA+AGG | - | chr4.4:3394213-3394232 | MS.gene05880:CDS | 30.0% | |
| AAGTTGAGGTATGAAATTGT+AGG | - | chr4.4:3393091-3393110 | MS.gene05880:intron | 30.0% | |
| AATGATTTAAAGGAACAGTC+TGG | - | chr4.4:3393585-3393604 | MS.gene05880:intron | 30.0% | |
| AATGGTATCACTAAAATGGA+AGG | - | chr4.4:3393992-3394011 | MS.gene05880:CDS | 30.0% | |
| AATTGTGAATACAGGGAATA+GGG | - | chr4.4:3392798-3392817 | MS.gene05880:intron | 30.0% | |
| AATTTCAACCTTGTAAGGTT+TGG | - | chr4.4:3393355-3393374 | MS.gene05880:intron | 30.0% | |
| AGAGGAATGTAAGTATTAAG+AGG | + | chr4.4:3393771-3393790 | None:intergenic | 30.0% | |
| AGGAATAAACATACTGTGTT+AGG | + | chr4.4:3394093-3394112 | None:intergenic | 30.0% | |
| AGTTGAGATTGATATGAACT+TGG | + | chr4.4:3393057-3393076 | None:intergenic | 30.0% | |
| ATAAAAAAGGACAATGCAGT+AGG | + | chr4.4:3393439-3393458 | None:intergenic | 30.0% | |
| ATCATCAACAACAACTACAA+CGG | - | chr4.4:3391780-3391799 | MS.gene05880:CDS | 30.0% | |
| ATGATAAGCAGAAAGATGAA+GGG | + | chr4.4:3394520-3394539 | None:intergenic | 30.0% | |
| ATGTGAATCCAAATTTATCG+TGG | - | chr4.4:3393028-3393047 | MS.gene05880:intron | 30.0% | |
| ATTGCAGATTAGAAGATTTG+TGG | - | chr4.4:3394181-3394200 | MS.gene05880:intron | 30.0% | |
| ATTTCAACCTTGTAAGGTTT+GGG | - | chr4.4:3393356-3393375 | MS.gene05880:intron | 30.0% | |
| CAACGCACATAGTATAAAAA+AGG | + | chr4.4:3393452-3393471 | None:intergenic | 30.0% | |
| GTTGAGATTGATATGAACTT+GGG | + | chr4.4:3393056-3393075 | None:intergenic | 30.0% | |
| TAAAAAAGGACAATGCAGTA+GGG | + | chr4.4:3393438-3393457 | None:intergenic | 30.0% | |
| TCACAATGGTATCACTAAAA+TGG | - | chr4.4:3393988-3394007 | MS.gene05880:CDS | 30.0% | |
| TCATCTTACCCTGTATTATA+TGG | - | chr4.4:3392755-3392774 | MS.gene05880:intron | 30.0% | |
| TCTTAATACTTACATTCCTC+TGG | - | chr4.4:3393770-3393789 | MS.gene05880:intron | 30.0% | |
| TGCTTTCAGTTTGAACTTAT+TGG | - | chr4.4:3393856-3393875 | MS.gene05880:intron | 30.0% | |
| TTAATAAATCCCCACATTGT+GGG | + | chr4.4:3393202-3393221 | None:intergenic | 30.0% | |
| TTATACTAGCGTATAAATGG+AGG | - | chr4.4:3392930-3392949 | MS.gene05880:intron | 30.0% | |
| TTGAGATTGATATGAACTTG+GGG | + | chr4.4:3393055-3393074 | None:intergenic | 30.0% | |
| TTTAATAAATCCCCACATTG+TGG | + | chr4.4:3393203-3393222 | None:intergenic | 30.0% | |
| ! | ATCCTTCGATTGATTCTATT+TGG | + | chr4.4:3394218-3394237 | None:intergenic | 30.0% |
| ! | ATGTTCAATCTCCTCAATTT+TGG | + | chr4.4:3392304-3392323 | None:intergenic | 30.0% |
| ! | TTAACTAACCCGTAATTTGT+TGG | + | chr4.4:3392358-3392377 | None:intergenic | 30.0% |
| ! | TTCACTGCATATTTTCAAAC+TGG | + | chr4.4:3393161-3393180 | None:intergenic | 30.0% |
| ! | TTGATGATACATCTAAAACC+CGG | + | chr4.4:3394039-3394058 | None:intergenic | 30.0% |
| !! | ATTGATGAATGGCTATTTTC+TGG | + | chr4.4:3393823-3393842 | None:intergenic | 30.0% |
| !! | GTTATTTTCTAGGTAGATTG+TGG | + | chr4.4:3394277-3394296 | None:intergenic | 30.0% |
| !! | TGATAACTTTTTGGCATACA+GGG | - | chr4.4:3393935-3393954 | MS.gene05880:intron | 30.0% |
| !! | TTACGGGTTAGTTAATGTTA+TGG | - | chr4.4:3392363-3392382 | MS.gene05880:CDS | 30.0% |
| AACGAAATTGCTTCGTTACA+TGG | - | chr4.4:3392222-3392241 | MS.gene05880:intron | 35.0% | |
| AACTCGGTTCCAACAAATTA+CGG | - | chr4.4:3392346-3392365 | MS.gene05880:CDS | 35.0% | |
| AACTTATTGGTAAATAGGGC+TGG | - | chr4.4:3393869-3393888 | MS.gene05880:intron | 35.0% | |
| AATCGTCTTACTTCGATGAT+AGG | - | chr4.4:3392578-3392597 | MS.gene05880:CDS | 35.0% | |
| ACTATCAGTTGATCTAGTTG+GGG | - | chr4.4:3394391-3394410 | MS.gene05880:CDS | 35.0% | |
| ACTTATTGGTAAATAGGGCT+GGG | - | chr4.4:3393870-3393889 | MS.gene05880:intron | 35.0% | |
| ATCAAATAAGCTAACCTCTG+TGG | - | chr4.4:3394054-3394073 | MS.gene05880:CDS | 35.0% | |
| CACTATCAGTTGATCTAGTT+GGG | - | chr4.4:3394390-3394409 | MS.gene05880:CDS | 35.0% | |
| CAGAGAAATACTTTCTCTGA+AGG | - | chr4.4:3393379-3393398 | MS.gene05880:intron | 35.0% | |
| CATGATAAGCAGAAAGATGA+AGG | + | chr4.4:3394521-3394540 | None:intergenic | 35.0% | |
| CTGATGAAAATTGCACGAAA+AGG | + | chr4.4:3394323-3394342 | None:intergenic | 35.0% | |
| CTTTCTGCTTATCATGAATG+TGG | - | chr4.4:3394525-3394544 | MS.gene05880:intron | 35.0% | |
| GAAAAAAGGAAATGCTGATG+TGG | - | chr4.4:3393237-3393256 | MS.gene05880:intron | 35.0% | |
| GAACTATACTTGAGTCACAA+TGG | - | chr4.4:3393974-3393993 | MS.gene05880:CDS | 35.0% | |
| GATCTTTCAAGAGGTAGAAT+TGG | + | chr4.4:3393623-3393642 | None:intergenic | 35.0% | |
| GGATTCACATTAATTAGCAC+TGG | + | chr4.4:3393018-3393037 | None:intergenic | 35.0% | |
| TACTTCGATGATAGGATTTG+AGG | - | chr4.4:3392586-3392605 | MS.gene05880:CDS | 35.0% | |
| TCAATCTCAACTATAAGGAC+TGG | - | chr4.4:3393065-3393084 | MS.gene05880:intron | 35.0% | |
| TGAAATTATCAACTCAAGGC+CGG | + | chr4.4:3394145-3394164 | None:intergenic | 35.0% | |
| TTAGGGGAGTCAGTTATATA+GGG | - | chr4.4:3393291-3393310 | MS.gene05880:intron | 35.0% | |
| ! | ACTGCATATTTTCAAACTGG+TGG | + | chr4.4:3393158-3393177 | None:intergenic | 35.0% |
| ! | ATAAGGACTGGTAAAAGTTG+AGG | - | chr4.4:3393077-3393096 | MS.gene05880:intron | 35.0% |
| ! | ATTTAGAATGAGGGAAATGG+AGG | + | chr4.4:3394113-3394132 | None:intergenic | 35.0% |
| ! | TGGTTTTTCTCAATGCAAAG+CGG | - | chr4.4:3394545-3394564 | MS.gene05880:CDS | 35.0% |
| !! | ATGGCTATTTTCTGGAAATG+TGG | + | chr4.4:3393815-3393834 | None:intergenic | 35.0% |
| !! | CTGATAACTTTTTGGCATAC+AGG | - | chr4.4:3393934-3393953 | MS.gene05880:intron | 35.0% |
| !! | TACGATTGGCTTAATATGGA+GGG | - | chr4.4:3392674-3392693 | MS.gene05880:intron | 35.0% |
| !! | TGGCTATTTTCTGGAAATGT+GGG | + | chr4.4:3393814-3393833 | None:intergenic | 35.0% |
| !! | TTACGATTGGCTTAATATGG+AGG | - | chr4.4:3392673-3392692 | MS.gene05880:intron | 35.0% |
| !!! | CATTTGCAGATTTTGGAACT+CGG | - | chr4.4:3392330-3392349 | MS.gene05880:CDS | 35.0% |
| !!! | GAGAGAGAGTTTTTTGAGAT+CGG | + | chr4.4:3391962-3391981 | None:intergenic | 35.0% |
| !!! | TTTTTTGAGATCGGAGAGTT+GGG | + | chr4.4:3391953-3391972 | None:intergenic | 35.0% |
| AATTGCTTCGTTACATGGTG+TGG | - | chr4.4:3392227-3392246 | MS.gene05880:intron | 40.0% | |
| AATTTGCAGGAGTTATGGCT+TGG | - | chr4.4:3392488-3392507 | MS.gene05880:CDS | 40.0% | |
| ACTCGGTTCCAACAAATTAC+GGG | - | chr4.4:3392347-3392366 | MS.gene05880:CDS | 40.0% | |
| AGAACCTAGGAGAAGAAAGA+GGG | + | chr4.4:3392061-3392080 | None:intergenic | 40.0% | |
| AGAGAGTCATCATTCTGACA+AGG | - | chr4.4:3393520-3393539 | MS.gene05880:intron | 40.0% | |
| AGATGCAATTCATGAGCAAG+AGG | - | chr4.4:3393556-3393575 | MS.gene05880:intron | 40.0% | |
| ATAACTCCTGCAAATTCACC+AGG | + | chr4.4:3392484-3392503 | None:intergenic | 40.0% | |
| CAACTATACTGCCATCCTAA+GGG | - | chr4.4:3394735-3394754 | MS.gene05880:CDS | 40.0% | |
| CCAACTAGATCAACTGATAG+TGG | + | chr4.4:3394392-3394411 | None:intergenic | 40.0% | |
| CCACTATCAGTTGATCTAGT+TGG | - | chr4.4:3394389-3394408 | MS.gene05880:CDS | 40.0% | |
| CGACGAATCATCAACCTTAT+TGG | - | chr4.4:3391819-3391838 | MS.gene05880:CDS | 40.0% | |
| CTTAGGATGGCAGTATAGTT+GGG | + | chr4.4:3394736-3394755 | None:intergenic | 40.0% | |
| CTTAGGGGAGTCAGTTATAT+AGG | - | chr4.4:3393290-3393309 | MS.gene05880:intron | 40.0% | |
| CTTATTGGTAAATAGGGCTG+GGG | - | chr4.4:3393871-3393890 | MS.gene05880:intron | 40.0% | |
| CTTTGCTCTATGGGTAGTTA+GGG | - | chr4.4:3393404-3393423 | MS.gene05880:intron | 40.0% | |
| GCAAGATTATGCACACTTCA+TGG | + | chr4.4:3394426-3394445 | None:intergenic | 40.0% | |
| GTAACTGGTGAGATCCAATA+AGG | + | chr4.4:3391836-3391855 | None:intergenic | 40.0% | |
| GTTATGAATGTCATCCACAG+AGG | + | chr4.4:3394071-3394090 | None:intergenic | 40.0% | |
| TAACTCCTGCAAATTCACCA+GGG | + | chr4.4:3392483-3392502 | None:intergenic | 40.0% | |
| TGCGTGTGTTATCCAACTTA+GGG | - | chr4.4:3393274-3393293 | MS.gene05880:intron | 40.0% | |
| TGGTGAATTTGCAGGAGTTA+TGG | - | chr4.4:3392483-3392502 | MS.gene05880:CDS | 40.0% | |
| TGTCATCTTTAGCCAATCTC+CGG | - | chr4.4:3394017-3394036 | MS.gene05880:CDS | 40.0% | |
| TGTTGGGAAAGATTTCCCTT+AGG | + | chr4.4:3394753-3394772 | None:intergenic | 40.0% | |
| TTATTGGTAAATAGGGCTGG+GGG | - | chr4.4:3393872-3393891 | MS.gene05880:intron | 40.0% | |
| TTTGCTCTATGGGTAGTTAG+GGG | - | chr4.4:3393405-3393424 | MS.gene05880:intron | 40.0% | |
| ! | TACATCTAAAACCCGGAGAT+TGG | + | chr4.4:3394032-3394051 | None:intergenic | 40.0% |
| ! | TATAACTGACTCCCCTAAGT+TGG | + | chr4.4:3393289-3393308 | None:intergenic | 40.0% |
| !! | ATCAATCGAAGGATTTGCTG+AGG | - | chr4.4:3394224-3394243 | MS.gene05880:CDS | 40.0% |
| !!! | GTTTTTTGAGATCGGAGAGT+TGG | + | chr4.4:3391954-3391973 | None:intergenic | 40.0% |
| AAATCCCCACATTGTGGGTT+TGG | + | chr4.4:3393197-3393216 | None:intergenic | 45.0% | |
| AACGCATCGAAACAGAACCT+AGG | + | chr4.4:3392074-3392093 | None:intergenic | 45.0% | |
| AACTACAACGGCTACAGATC+TGG | - | chr4.4:3391792-3391811 | MS.gene05880:CDS | 45.0% | |
| ATCCAGACTTTCTTTCCTGC+AGG | - | chr4.4:3394702-3394721 | MS.gene05880:CDS | 45.0% | |
| CAGAACCTAGGAGAAGAAAG+AGG | + | chr4.4:3392062-3392081 | None:intergenic | 45.0% | |
| CCAACTATACTGCCATCCTA+AGG | - | chr4.4:3394734-3394753 | MS.gene05880:CDS | 45.0% | |
| CCTTAGGATGGCAGTATAGT+TGG | + | chr4.4:3394737-3394756 | None:intergenic | 45.0% | |
| CTCCATTATCACTACCTACG+AGG | - | chr4.4:3394473-3394492 | MS.gene05880:intron | 45.0% | |
| CTGAAGGAGCTTTGCTCTAT+GGG | - | chr4.4:3393395-3393414 | MS.gene05880:intron | 45.0% | |
| CTGCGTGTGTTATCCAACTT+AGG | - | chr4.4:3393273-3393292 | MS.gene05880:intron | 45.0% | |
| CTTGGGGACCACGATAAATT+TGG | + | chr4.4:3393039-3393058 | None:intergenic | 45.0% | |
| CTTTCCCTCTTTCTTCTCCT+AGG | - | chr4.4:3392054-3392073 | MS.gene05880:intron | 45.0% | |
| GACCTCGTAGGTAGTGATAA+TGG | + | chr4.4:3394478-3394497 | None:intergenic | 45.0% | |
| GAGAGTGGATAAACGATTGG+CGG | + | chr4.4:3391917-3391936 | None:intergenic | 45.0% | |
| GCGTGTGTTATCCAACTTAG+GGG | - | chr4.4:3393275-3393294 | MS.gene05880:intron | 45.0% | |
| GCTTTGCTCTATGGGTAGTT+AGG | - | chr4.4:3393403-3393422 | MS.gene05880:intron | 45.0% | |
| GGGAAAGATTTCCCTTAGGA+TGG | + | chr4.4:3394749-3394768 | None:intergenic | 45.0% | |
| GTCATCTTTAGCCAATCTCC+GGG | - | chr4.4:3394018-3394037 | MS.gene05880:CDS | 45.0% | |
| GTCGAGAGTGGATAAACGAT+TGG | + | chr4.4:3391920-3391939 | None:intergenic | 45.0% | |
| GTCTGAATAGAGAGCGAGAA+GGG | - | chr4.4:3393313-3393332 | MS.gene05880:intron | 45.0% | |
| TATGTGCGTTGTTGTGATGC+TGG | - | chr4.4:3393461-3393480 | MS.gene05880:intron | 45.0% | |
| TCTGAAGGAGCTTTGCTCTA+TGG | - | chr4.4:3393394-3393413 | MS.gene05880:intron | 45.0% | |
| TCTGAATAGAGAGCGAGAAG+GGG | - | chr4.4:3393314-3393333 | MS.gene05880:intron | 45.0% | |
| TTCGTTACATGGTGTGGCTA+GGG | - | chr4.4:3392233-3392252 | MS.gene05880:intron | 45.0% | |
| TTCTCTGCCCAAACCTTACA+AGG | + | chr4.4:3393366-3393385 | None:intergenic | 45.0% | |
| !! | CGTCGGTGATTAGGTTTTGA+CGG | + | chr4.4:3391984-3392003 | None:intergenic | 45.0% |
| !! | TAATTAGCACTGGCAGTGCT+TGG | + | chr4.4:3393008-3393027 | None:intergenic | 45.0% |
| !!! | TTTTTTTTTTTTTATTATTC+AGG | - | chr4.4:3392116-3392135 | MS.gene05880:intron | 5.0% |
| AAGTACCTCGAGAGAGGAGA+GGG | + | chr4.4:3392037-3392056 | None:intergenic | 50.0% | |
| ACCACCAAACCCACAATGTG+GGG | - | chr4.4:3393190-3393209 | MS.gene05880:intron | 50.0% | |
| AGCCTGCAGGAAAGAAAGTC+TGG | + | chr4.4:3394707-3394726 | None:intergenic | 50.0% | |
| ATCACTACCTACGAGGTCGA+TGG | - | chr4.4:3394480-3394499 | MS.gene05880:intron | 50.0% | |
| ATTGGCGGTGAGGTCTAACT+CGG | + | chr4.4:3391902-3391921 | None:intergenic | 50.0% | |
| CTGAATAGAGAGCGAGAAGG+GGG | - | chr4.4:3393315-3393334 | MS.gene05880:intron | 50.0% | |
| CTTCGTTACATGGTGTGGCT+AGG | - | chr4.4:3392232-3392251 | MS.gene05880:intron | 50.0% | |
| GACCACCAAACCCACAATGT+GGG | - | chr4.4:3393189-3393208 | MS.gene05880:intron | 50.0% | |
| GAGATCGTGAAGCTGGTAAC+TGG | + | chr4.4:3391851-3391870 | None:intergenic | 50.0% | |
| GATGGAGAATTTGCAGACCC+TGG | - | chr4.4:3392463-3392482 | MS.gene05880:intron | 50.0% | |
| GGAAATGCTGATGTGGCACA+TGG | - | chr4.4:3393244-3393263 | MS.gene05880:intron | 50.0% | |
| GGTCTGAATAGAGAGCGAGA+AGG | - | chr4.4:3393312-3393331 | MS.gene05880:intron | 50.0% | |
| TGGATAAACGATTGGCGGTG+AGG | + | chr4.4:3391912-3391931 | None:intergenic | 50.0% | |
| ! | AAAGTACCTCGAGAGAGGAG+AGG | + | chr4.4:3392038-3392057 | None:intergenic | 50.0% |
| ! | AGGTCTAACTCGGTGAGGTT+AGG | + | chr4.4:3391892-3391911 | None:intergenic | 50.0% |
| ! | TCTAACTCGGTGAGGTTAGG+AGG | + | chr4.4:3391889-3391908 | None:intergenic | 50.0% |
| AGCGAGAAGGGGGATCATTG+CGG | - | chr4.4:3393325-3393344 | MS.gene05880:intron | 55.0% | |
| AGTTGGGTGACTTAGCCTGC+AGG | + | chr4.4:3394720-3394739 | None:intergenic | 55.0% | |
| CAGTTTGCCATCGACCTCGT+AGG | + | chr4.4:3394490-3394509 | None:intergenic | 55.0% | |
| CCAGGAAGAGAGAGGAACGA+CGG | + | chr4.4:3392010-3392029 | None:intergenic | 55.0% | |
| CTGAGTCGAGATCGTGAAGC+TGG | + | chr4.4:3391858-3391877 | None:intergenic | 55.0% | |
| GCAGACCCTGGTGAATTTGC+AGG | - | chr4.4:3392475-3392494 | MS.gene05880:intron | 55.0% | |
| GGACCACCAAACCCACAATG+TGG | - | chr4.4:3393188-3393207 | MS.gene05880:intron | 55.0% | |
| TCCCCACATTGTGGGTTTGG+TGG | + | chr4.4:3393194-3393213 | None:intergenic | 55.0% | |
| TGCTGATGTGGCACATGGCA+AGG | - | chr4.4:3393249-3393268 | MS.gene05880:intron | 55.0% | |
| ! | AGGGTGTTCCAGGAAGAGAG+AGG | + | chr4.4:3392018-3392037 | None:intergenic | 55.0% |
| !! | GAGGGAAAGTACCTCGAGAG+AGG | + | chr4.4:3392043-3392062 | None:intergenic | 55.0% |
| CCGTCGTTCCTCTCTCTTCC+TGG | - | chr4.4:3392007-3392026 | MS.gene05880:intron | 60.0% | |
| GAACACCCTCTCCTCTCTCG+AGG | - | chr4.4:3392029-3392048 | MS.gene05880:intron | 60.0% | |
| ! | CGGTGAGGTCTAACTCGGTG+AGG | + | chr4.4:3391897-3391916 | None:intergenic | 60.0% |
| !! | GAGAGAGGAGAGGGTGTTCC+AGG | + | chr4.4:3392028-3392047 | None:intergenic | 60.0% |
| !! | GGATTTGCTGAGGCTGTCGC+TGG | - | chr4.4:3394234-3394253 | MS.gene05880:CDS | 60.0% |
| CGGAGAGTTGGGCGATGCGA+GGG | + | chr4.4:3391942-3391961 | None:intergenic | 65.0% | |
| GAGAGGAACGACGGCAGCGT+CGG | + | chr4.4:3392001-3392020 | None:intergenic | 65.0% | |
| TCGGAGAGTTGGGCGATGCG+AGG | + | chr4.4:3391943-3391962 | None:intergenic | 65.0% | |
| !! | CGACGGCAGCGTCGGTGATT+AGG | + | chr4.4:3391993-3392012 | None:intergenic | 65.0% |
| GGCGATGCGAGGGTCGAGAG+TGG | + | chr4.4:3391932-3391951 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 3391775 | 3394804 | 3391775 | ID=MS.gene05880 |
| chr4.4 | mRNA | 3391775 | 3394804 | 3391775 | ID=MS.gene05880.t1;Parent=MS.gene05880 |
| chr4.4 | exon | 3394529 | 3394804 | 3394529 | ID=MS.gene05880.t1.exon1;Parent=MS.gene05880.t1 |
| chr4.4 | CDS | 3394529 | 3394804 | 3394529 | ID=cds.MS.gene05880.t1;Parent=MS.gene05880.t1 |
| chr4.4 | exon | 3394211 | 3394441 | 3394211 | ID=MS.gene05880.t1.exon2;Parent=MS.gene05880.t1 |
| chr4.4 | CDS | 3394211 | 3394441 | 3394211 | ID=cds.MS.gene05880.t1;Parent=MS.gene05880.t1 |
| chr4.4 | exon | 3393972 | 3394118 | 3393972 | ID=MS.gene05880.t1.exon3;Parent=MS.gene05880.t1 |
| chr4.4 | CDS | 3393972 | 3394118 | 3393972 | ID=cds.MS.gene05880.t1;Parent=MS.gene05880.t1 |
| chr4.4 | exon | 3392481 | 3392623 | 3392481 | ID=MS.gene05880.t1.exon4;Parent=MS.gene05880.t1 |
| chr4.4 | CDS | 3392481 | 3392623 | 3392481 | ID=cds.MS.gene05880.t1;Parent=MS.gene05880.t1 |
| chr4.4 | exon | 3392277 | 3392391 | 3392277 | ID=MS.gene05880.t1.exon5;Parent=MS.gene05880.t1 |
| chr4.4 | CDS | 3392277 | 3392391 | 3392277 | ID=cds.MS.gene05880.t1;Parent=MS.gene05880.t1 |
| chr4.4 | exon | 3391775 | 3391855 | 3391775 | ID=MS.gene05880.t1.exon6;Parent=MS.gene05880.t1 |
| chr4.4 | CDS | 3391775 | 3391855 | 3391775 | ID=cds.MS.gene05880.t1;Parent=MS.gene05880.t1 |
| Gene Sequence |
| Protein sequence |
