Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98695.t1 | XP_003623411.2 | 97.2 | 436 | 12 | 0 | 1 | 436 | 17 | 452 | 5.10E-239 | 836.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98695.t1 | Q9SCU1 | 72.4 | 399 | 105 | 2 | 22 | 420 | 11 | 404 | 4.5e-167 | 589.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98695.t1 | G7KU47 | 97.2 | 436 | 12 | 0 | 1 | 436 | 1 | 436 | 3.7e-239 | 836.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051478 | MS.gene98695 | 0.800671 | 1.29E-48 | -1.69E-46 |
| MS.gene053536 | MS.gene98695 | 0.81034 | 1.21E-50 | -1.69E-46 |
| MS.gene053538 | MS.gene98695 | 0.802625 | 5.13E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98695.t1 | MTR_7g070480 | 97.248 | 436 | 12 | 0 | 1 | 436 | 1 | 436 | 0.0 | 877 |
| MS.gene98695.t1 | MTR_4g013300 | 74.760 | 416 | 95 | 4 | 15 | 420 | 31 | 446 | 0.0 | 648 |
| MS.gene98695.t1 | MTR_8g095360 | 43.990 | 416 | 217 | 10 | 1 | 411 | 87 | 491 | 6.12e-116 | 348 |
| MS.gene98695.t1 | MTR_2g031610 | 43.026 | 423 | 191 | 8 | 45 | 420 | 46 | 465 | 2.41e-113 | 341 |
| MS.gene98695.t1 | MTR_4g033435 | 48.214 | 336 | 164 | 7 | 85 | 415 | 257 | 587 | 6.33e-108 | 331 |
| MS.gene98695.t1 | MTR_3g097350 | 49.085 | 328 | 157 | 7 | 84 | 406 | 234 | 556 | 2.69e-107 | 329 |
| MS.gene98695.t1 | MTR_1g069915 | 39.640 | 333 | 190 | 6 | 84 | 411 | 131 | 457 | 4.19e-79 | 253 |
| MS.gene98695.t1 | MTR_4g033435 | 52.607 | 211 | 93 | 4 | 85 | 291 | 257 | 464 | 1.32e-73 | 238 |
| MS.gene98695.t1 | MTR_8g096170 | 28.440 | 218 | 141 | 5 | 98 | 313 | 50 | 254 | 5.29e-19 | 86.7 |
| MS.gene98695.t1 | MTR_3g098530 | 27.358 | 212 | 139 | 4 | 95 | 304 | 64 | 262 | 9.30e-19 | 86.3 |
| MS.gene98695.t1 | MTR_8g096180 | 28.230 | 209 | 135 | 5 | 98 | 304 | 47 | 242 | 9.37e-18 | 82.8 |
| MS.gene98695.t1 | MTR_5g021050 | 28.000 | 225 | 140 | 7 | 100 | 310 | 76 | 292 | 2.03e-17 | 84.7 |
| MS.gene98695.t1 | MTR_5g021050 | 28.000 | 225 | 140 | 7 | 100 | 310 | 76 | 292 | 2.16e-17 | 84.7 |
| MS.gene98695.t1 | MTR_3g117100 | 28.194 | 227 | 137 | 8 | 100 | 310 | 110 | 326 | 7.91e-17 | 83.2 |
| MS.gene98695.t1 | MTR_8g096180 | 27.064 | 218 | 136 | 5 | 98 | 304 | 47 | 252 | 5.88e-16 | 77.8 |
| MS.gene98695.t1 | MTR_4g070810 | 28.054 | 221 | 133 | 8 | 100 | 304 | 107 | 317 | 1.99e-15 | 79.0 |
| MS.gene98695.t1 | MTR_1g022480 | 26.582 | 237 | 148 | 10 | 84 | 304 | 96 | 322 | 2.99e-15 | 78.2 |
| MS.gene98695.t1 | MTR_1g022480 | 26.582 | 237 | 148 | 10 | 84 | 304 | 96 | 322 | 3.03e-15 | 78.2 |
| MS.gene98695.t1 | MTR_1g022480 | 26.582 | 237 | 148 | 10 | 84 | 304 | 96 | 322 | 3.94e-15 | 78.2 |
| MS.gene98695.t1 | MTR_4g070790 | 26.941 | 219 | 138 | 7 | 100 | 304 | 84 | 294 | 8.99e-15 | 75.9 |
| MS.gene98695.t1 | MTR_3g112150 | 27.727 | 220 | 135 | 8 | 100 | 304 | 93 | 303 | 1.08e-14 | 76.6 |
| MS.gene98695.t1 | MTR_1g062480 | 52.542 | 59 | 19 | 1 | 260 | 318 | 43 | 92 | 1.21e-14 | 69.7 |
| MS.gene98695.t1 | MTR_4g070720 | 26.339 | 224 | 145 | 6 | 100 | 310 | 96 | 312 | 1.48e-14 | 76.3 |
| MS.gene98695.t1 | MTR_3g117090 | 26.786 | 224 | 144 | 6 | 100 | 310 | 97 | 313 | 2.05e-14 | 75.5 |
| MS.gene98695.t1 | MTR_3g117090 | 26.786 | 224 | 144 | 6 | 100 | 310 | 97 | 313 | 2.34e-14 | 75.5 |
| MS.gene98695.t1 | MTR_1g022480 | 25.926 | 216 | 138 | 8 | 103 | 304 | 31 | 238 | 1.65e-13 | 72.8 |
| MS.gene98695.t1 | MTR_8g076880 | 27.556 | 225 | 141 | 7 | 100 | 310 | 79 | 295 | 7.66e-13 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98695.t1 | AT3G51670 | 72.431 | 399 | 105 | 2 | 22 | 420 | 11 | 404 | 0.0 | 608 |
| MS.gene98695.t1 | AT1G72160 | 46.632 | 386 | 188 | 11 | 47 | 419 | 108 | 488 | 8.12e-112 | 338 |
| MS.gene98695.t1 | AT4G09160 | 47.644 | 382 | 183 | 10 | 47 | 419 | 265 | 638 | 9.28e-112 | 342 |
| MS.gene98695.t1 | AT4G09160 | 47.644 | 382 | 183 | 10 | 47 | 419 | 265 | 638 | 9.79e-112 | 342 |
| MS.gene98695.t1 | AT4G09160 | 47.644 | 382 | 183 | 10 | 47 | 419 | 290 | 663 | 1.47e-111 | 343 |
| MS.gene98695.t1 | AT1G30690 | 44.928 | 345 | 172 | 8 | 79 | 416 | 199 | 532 | 3.69e-98 | 304 |
| MS.gene98695.t1 | AT1G30690 | 44.928 | 345 | 172 | 8 | 79 | 416 | 199 | 532 | 3.69e-98 | 304 |
| MS.gene98695.t1 | AT1G22530 | 44.179 | 335 | 169 | 9 | 84 | 411 | 318 | 641 | 2.00e-87 | 280 |
| MS.gene98695.t1 | AT1G22530 | 43.881 | 335 | 170 | 9 | 84 | 411 | 352 | 675 | 2.55e-87 | 280 |
| MS.gene98695.t1 | AT1G72150 | 36.543 | 405 | 235 | 11 | 23 | 416 | 177 | 570 | 8.46e-77 | 249 |
| MS.gene98695.t1 | AT2G21540 | 28.444 | 225 | 139 | 7 | 100 | 310 | 95 | 311 | 2.47e-17 | 84.7 |
| MS.gene98695.t1 | AT2G21540 | 28.444 | 225 | 139 | 7 | 100 | 310 | 95 | 311 | 2.47e-17 | 84.7 |
| MS.gene98695.t1 | AT2G21540 | 28.444 | 225 | 139 | 7 | 100 | 310 | 95 | 311 | 2.62e-17 | 84.7 |
| MS.gene98695.t1 | AT2G21540 | 28.444 | 225 | 139 | 7 | 100 | 310 | 95 | 311 | 2.62e-17 | 84.7 |
| MS.gene98695.t1 | AT2G21540 | 28.444 | 225 | 139 | 7 | 100 | 310 | 95 | 311 | 2.62e-17 | 84.7 |
| MS.gene98695.t1 | AT2G21540 | 28.444 | 225 | 139 | 7 | 100 | 310 | 95 | 311 | 2.62e-17 | 84.7 |
| MS.gene98695.t1 | AT4G39180 | 28.444 | 225 | 139 | 7 | 100 | 310 | 96 | 312 | 4.30e-17 | 84.0 |
| MS.gene98695.t1 | AT4G39180 | 28.444 | 225 | 139 | 7 | 100 | 310 | 96 | 312 | 4.30e-17 | 84.0 |
| MS.gene98695.t1 | AT4G39180 | 28.444 | 225 | 139 | 7 | 100 | 310 | 96 | 312 | 4.47e-17 | 84.0 |
| MS.gene98695.t1 | AT4G34580 | 27.876 | 226 | 139 | 8 | 100 | 310 | 88 | 304 | 2.23e-16 | 81.6 |
| MS.gene98695.t1 | AT4G34580 | 27.876 | 226 | 139 | 8 | 100 | 310 | 88 | 304 | 2.23e-16 | 81.6 |
| MS.gene98695.t1 | AT4G36490 | 27.556 | 225 | 141 | 7 | 100 | 310 | 78 | 294 | 4.80e-16 | 80.9 |
| MS.gene98695.t1 | AT2G18180 | 28.444 | 225 | 139 | 7 | 100 | 310 | 81 | 297 | 1.39e-15 | 79.3 |
| MS.gene98695.t1 | AT2G18180 | 28.444 | 225 | 139 | 7 | 100 | 310 | 81 | 297 | 1.57e-15 | 79.3 |
| MS.gene98695.t1 | AT4G39170 | 25.806 | 279 | 166 | 10 | 26 | 279 | 32 | 294 | 1.86e-15 | 79.0 |
| MS.gene98695.t1 | AT4G39170 | 25.806 | 279 | 166 | 10 | 26 | 279 | 32 | 294 | 1.96e-15 | 79.0 |
| MS.gene98695.t1 | AT1G19650 | 28.139 | 231 | 139 | 9 | 100 | 314 | 104 | 323 | 3.22e-15 | 78.2 |
| MS.gene98695.t1 | AT2G16380 | 27.660 | 235 | 142 | 9 | 92 | 310 | 82 | 304 | 3.47e-15 | 78.2 |
| MS.gene98695.t1 | AT2G16380 | 27.660 | 235 | 142 | 9 | 92 | 310 | 82 | 304 | 3.47e-15 | 78.2 |
| MS.gene98695.t1 | AT1G19650 | 27.753 | 227 | 138 | 8 | 100 | 310 | 104 | 320 | 3.64e-15 | 77.8 |
| MS.gene98695.t1 | AT2G18180 | 28.125 | 224 | 139 | 7 | 101 | 310 | 11 | 226 | 9.98e-15 | 76.3 |
| MS.gene98695.t1 | AT2G18180 | 28.125 | 224 | 139 | 7 | 101 | 310 | 11 | 226 | 1.31e-14 | 76.3 |
| MS.gene98695.t1 | AT2G21520 | 26.154 | 195 | 121 | 6 | 100 | 279 | 114 | 300 | 6.58e-14 | 74.3 |
| MS.gene98695.t1 | AT2G21520 | 26.154 | 195 | 121 | 6 | 100 | 279 | 114 | 300 | 6.58e-14 | 74.3 |
| MS.gene98695.t1 | AT2G21520 | 26.154 | 195 | 121 | 6 | 100 | 279 | 110 | 296 | 7.82e-14 | 73.9 |
| MS.gene98695.t1 | AT1G01630 | 24.186 | 215 | 142 | 5 | 95 | 304 | 47 | 245 | 1.65e-13 | 70.9 |
| MS.gene98695.t1 | AT4G08690 | 24.413 | 213 | 142 | 5 | 96 | 304 | 41 | 238 | 3.93e-13 | 70.1 |
| MS.gene98695.t1 | AT4G08690 | 24.413 | 213 | 142 | 5 | 96 | 304 | 41 | 238 | 3.93e-13 | 70.1 |
| MS.gene98695.t1 | AT4G08690 | 24.413 | 213 | 142 | 5 | 96 | 304 | 41 | 238 | 3.93e-13 | 70.1 |
| MS.gene98695.t1 | AT1G55840 | 25.581 | 215 | 130 | 8 | 101 | 299 | 39 | 239 | 1.89e-12 | 68.6 |
| MS.gene98695.t1 | AT1G55840 | 25.581 | 215 | 130 | 8 | 101 | 299 | 12 | 212 | 2.05e-12 | 68.2 |
| MS.gene98695.t1 | AT2G18180 | 28.218 | 202 | 123 | 7 | 123 | 310 | 6 | 199 | 1.29e-11 | 66.6 |
Find 70 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGTAGCTAGCTTCTGAATT+TGG | 0.176395 | 7.1:+31444151 | None:intergenic |
| GCTTCTGAGTTCACTGTTAA+AGG | 0.184177 | 7.1:-31444908 | MS.gene98695:CDS |
| GTGAACTCAGAAGCTGGTTT+TGG | 0.239830 | 7.1:+31444917 | None:intergenic |
| TTCCATTAATGTTGTGACTA+TGG | 0.244429 | 7.1:+31446349 | None:intergenic |
| AACCATAGTCACAACATTAA+TGG | 0.252522 | 7.1:-31446351 | MS.gene98695:CDS |
| ACCTTACGAGCAACCATTTC+AGG | 0.266158 | 7.1:+31445717 | None:intergenic |
| CGGTCGATAACTCTGCTTCT+AGG | 0.275710 | 7.1:-31444036 | MS.gene98695:CDS |
| TGCTTGTGAAGTGTCTTTCT+TGG | 0.302342 | 7.1:-31446091 | MS.gene98695:CDS |
| AAATGTTGTGGATGAAGATT+TGG | 0.311161 | 7.1:-31446048 | MS.gene98695:CDS |
| TGTAGTTGGAGGCTGGGATT+TGG | 0.312615 | 7.1:-31444194 | MS.gene98695:CDS |
| GATTCAAGTTACTGATCTTA+AGG | 0.332587 | 7.1:-31445805 | MS.gene98695:CDS |
| CTTTCTTGGAGGAAAGAGTT+TGG | 0.366313 | 7.1:-31446077 | MS.gene98695:CDS |
| TTAGTTCTTTGAGTCAGAAA+TGG | 0.368588 | 7.1:+31445285 | None:intergenic |
| GAGAATATTCCAATTCAATA+TGG | 0.371553 | 7.1:-31444977 | MS.gene98695:CDS |
| CTCAATCCACCATATTGAAT+TGG | 0.374599 | 7.1:+31444968 | None:intergenic |
| AAGGAAAAGCTCTTAACTTC+TGG | 0.387606 | 7.1:-31446236 | MS.gene98695:CDS |
| TTTCTTGGAGTTTCTAGAAA+TGG | 0.388074 | 7.1:+31446398 | None:intergenic |
| GAGCAAGTTTGTGATCTCTA+AGG | 0.402946 | 7.1:-31445262 | MS.gene98695:CDS |
| TCAAGATAACTATCCTGAAA+TGG | 0.404693 | 7.1:-31445730 | MS.gene98695:CDS |
| GGGAGATTGTAGTTGGAGGC+TGG | 0.407967 | 7.1:-31444201 | MS.gene98695:CDS |
| AGCAGGCATAATGGTACTTT+CGG | 0.414858 | 7.1:-31444056 | MS.gene98695:CDS |
| ACAGCCCTTAACTCACTCTT+AGG | 0.419674 | 7.1:+31445777 | None:intergenic |
| ATCAAAAGAAGCAGGCATAA+TGG | 0.431036 | 7.1:-31444065 | MS.gene98695:CDS |
| TTTCTAGAAATGGTGTGCTT+AGG | 0.436314 | 7.1:+31446408 | None:intergenic |
| TATTGAATTGGAATATTCTC+AGG | 0.440014 | 7.1:+31444980 | None:intergenic |
| AATGTTGTGGATGAAGATTT+GGG | 0.445253 | 7.1:-31446047 | MS.gene98695:CDS |
| TCCTGAAATGGTTGCTCGTA+AGG | 0.456947 | 7.1:-31445718 | MS.gene98695:intron |
| GGAGATTGTAGTTGGAGGCT+GGG | 0.463853 | 7.1:-31444200 | MS.gene98695:CDS |
| ATATGCCTAAGAGTGAGTTA+AGG | 0.470060 | 7.1:-31445782 | MS.gene98695:CDS |
| AAAGTGAACATACAAATAGA+AGG | 0.473146 | 7.1:-31444878 | MS.gene98695:CDS |
| CCTGTGTGTTATAATCATTA+TGG | 0.475087 | 7.1:-31445966 | MS.gene98695:CDS |
| TATGCCTAAGAGTGAGTTAA+GGG | 0.484189 | 7.1:-31445781 | MS.gene98695:CDS |
| ATCAAAGAATTCACCCCACC+AGG | 0.485860 | 7.1:+31445825 | None:intergenic |
| CTACACTATAGAAGTTGAAA+AGG | 0.488723 | 7.1:-31444134 | MS.gene98695:CDS |
| TTGTGAAGTGTCTTTCTTGG+AGG | 0.498038 | 7.1:-31446088 | MS.gene98695:CDS |
| ATCAAGTGGGAGATTGTAGT+TGG | 0.499306 | 7.1:-31444208 | MS.gene98695:CDS |
| AAAAGCATTGAAACAGTTGA+AGG | 0.500192 | 7.1:-31446255 | MS.gene98695:CDS |
| TTATGGTGTGTTCAAAGATA+AGG | 0.503248 | 7.1:-31445949 | MS.gene98695:CDS |
| TACTCATGGGTTTGATAGAG+AGG | 0.507545 | 7.1:-31445994 | MS.gene98695:CDS |
| TTGGGATTCAAAGAGCTTGA+AGG | 0.513195 | 7.1:-31446029 | MS.gene98695:CDS |
| TTAACAGTGAACTCAGAAGC+TGG | 0.523617 | 7.1:+31444911 | None:intergenic |
| TTTCTCAGAGGATTTGAGGT+TGG | 0.524320 | 7.1:+31446277 | None:intergenic |
| AATATTCCAATTCAATATGG+TGG | 0.538693 | 7.1:-31444974 | MS.gene98695:CDS |
| AGGCTTAATTGCATATCAGA+TGG | 0.543533 | 7.1:+31443959 | None:intergenic |
| TTTACAGTTTAAACCTGGTG+GGG | 0.553174 | 7.1:-31445838 | MS.gene98695:CDS |
| TAAGCCTCAAAATCAAATAG+TGG | 0.553201 | 7.1:-31443943 | None:intergenic |
| TGGGGTGTTTGTTTGATCAA+AGG | 0.560070 | 7.1:-31446188 | MS.gene98695:CDS |
| TCATTCACATCAAAAGAAGC+AGG | 0.565896 | 7.1:-31444073 | MS.gene98695:CDS |
| ACTCATGGGTTTGATAGAGA+GGG | 0.567192 | 7.1:-31445993 | MS.gene98695:CDS |
| GGGTTCAAGTTCTTGAGAGA+GGG | 0.569611 | 7.1:-31445869 | MS.gene98695:CDS |
| GATCAAACAAACACCCCACA+TGG | 0.575221 | 7.1:+31446193 | None:intergenic |
| AACAACAATGGTTCCATGTG+GGG | 0.585763 | 7.1:-31446206 | MS.gene98695:CDS |
| AAGTGGGAGATTGTAGTTGG+AGG | 0.586468 | 7.1:-31444205 | MS.gene98695:CDS |
| TCTGGTGAAATTAACAACAA+TGG | 0.593010 | 7.1:-31446218 | MS.gene98695:CDS |
| AGATAAGGAAATGTATGAGA+AGG | 0.595028 | 7.1:-31445934 | MS.gene98695:CDS |
| CTATAGAAGTTGAAAAGGCA+AGG | 0.600332 | 7.1:-31444129 | MS.gene98695:CDS |
| GTTTGGTGCTGAAAATGTTG+TGG | 0.600996 | 7.1:-31446060 | MS.gene98695:CDS |
| TAACAACAATGGTTCCATGT+GGG | 0.601972 | 7.1:-31446207 | MS.gene98695:CDS |
| AGGGTTCAAGTTCTTGAGAG+AGG | 0.610104 | 7.1:-31445870 | MS.gene98695:CDS |
| CATACAAATAGAAGGAGTTG+AGG | 0.610399 | 7.1:-31444870 | MS.gene98695:intron |
| CCATAATGATTATAACACAC+AGG | 0.614159 | 7.1:+31445966 | None:intergenic |
| TACAACATGCTGAAATACCA+TGG | 0.625322 | 7.1:+31445321 | None:intergenic |
| AGAGTGGTGCAACAATCAAG+TGG | 0.626220 | 7.1:-31444222 | MS.gene98695:CDS |
| GGACCATTCTGAAAATCACT+AGG | 0.626931 | 7.1:+31444941 | None:intergenic |
| TCTGAGTTCACTGTTAAAGG+AGG | 0.633144 | 7.1:-31444905 | MS.gene98695:CDS |
| AAGTTTGTGATCTCTAAGGA+AGG | 0.634705 | 7.1:-31445258 | MS.gene98695:CDS |
| GAGTGGTGCAACAATCAAGT+GGG | 0.657297 | 7.1:-31444221 | MS.gene98695:CDS |
| CATAATGATTATAACACACA+GGG | 0.662377 | 7.1:+31445967 | None:intergenic |
| TGGTGTGCTTAGGATTGACA+TGG | 0.671206 | 7.1:+31446418 | None:intergenic |
| TTAACAACAATGGTTCCATG+TGG | 0.677456 | 7.1:-31446208 | MS.gene98695:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTATTTAAAACTTTTACTTA+TGG | - | chr7.1:31445925-31445944 | MS.gene98695:CDS | 15.0% |
| !!! | TTTTTTTGTTCAGATTTATA+AGG | - | chr7.1:31445386-31445405 | MS.gene98695:intron | 15.0% |
| !! | ACAATAATAGAAAATTTGTG+GGG | + | chr7.1:31445343-31445362 | None:intergenic | 20.0% |
| !! | CACAATAATAGAAAATTTGT+GGG | + | chr7.1:31445344-31445363 | None:intergenic | 20.0% |
| !! | TATAGATATATTAAGTGTCA+CGG | - | chr7.1:31445684-31445703 | MS.gene98695:intron | 20.0% |
| !! | TCTTATTAGAGACTATATAA+CGG | - | chr7.1:31445567-31445586 | MS.gene98695:intron | 20.0% |
| !! | TTTATTTGAAGAAAGTAACA+TGG | - | chr7.1:31444738-31444757 | MS.gene98695:intron | 20.0% |
| !! | TTTCATGTCATACTAAATAT+AGG | + | chr7.1:31445012-31445031 | None:intergenic | 20.0% |
| !!! | AGATGCAATTTTAGAAATTT+TGG | - | chr7.1:31445205-31445224 | MS.gene98695:intron | 20.0% |
| !!! | TACGTTTAAGATACATATAT+TGG | - | chr7.1:31446038-31446057 | MS.gene98695:CDS | 20.0% |
| !!! | TTATTTTGGTGTTGTTTATT+TGG | - | chr7.1:31444770-31444789 | MS.gene98695:intron | 20.0% |
| ! | AAAGTGAACATACAAATAGA+AGG | - | chr7.1:31445511-31445530 | MS.gene98695:intron | 25.0% |
| ! | AATATTCCAATTCAATATGG+TGG | - | chr7.1:31445415-31445434 | MS.gene98695:intron | 25.0% |
| ! | ACAAAAACAATGTCATATCA+AGG | + | chr7.1:31444699-31444718 | None:intergenic | 25.0% |
| ! | CATAATGATTATAACACACA+GGG | + | chr7.1:31444425-31444444 | None:intergenic | 25.0% |
| ! | GAGAATATTCCAATTCAATA+TGG | - | chr7.1:31445412-31445431 | MS.gene98695:intron | 25.0% |
| ! | GCACAATAATAGAAAATTTG+TGG | + | chr7.1:31445345-31445364 | None:intergenic | 25.0% |
| ! | TATTGAATTGGAATATTCTC+AGG | + | chr7.1:31445412-31445431 | None:intergenic | 25.0% |
| ! | TGTAAAACGTCGTTAAATAT+CGG | + | chr7.1:31445632-31445651 | None:intergenic | 25.0% |
| !! | ATATTTAACGACGTTTTACA+TGG | - | chr7.1:31445632-31445651 | MS.gene98695:intron | 25.0% |
| !! | GAAGCAATTTTCATTAACAT+TGG | + | chr7.1:31446105-31446124 | None:intergenic | 25.0% |
| !!! | ATTTTGTTTGATACATAGAC+AGG | + | chr7.1:31445310-31445329 | None:intergenic | 25.0% |
| !!! | CATGATTAGTCACAATTTTT+AGG | - | chr7.1:31445754-31445773 | MS.gene98695:CDS | 25.0% |
| !!! | GTGTATTGTTGTTGTATTTT+CGG | + | chr7.1:31446411-31446430 | None:intergenic | 25.0% |
| AAATGTTGTGGATGAAGATT+TGG | - | chr7.1:31444341-31444360 | MS.gene98695:intron | 30.0% | |
| AACCATAGTCACAACATTAA+TGG | - | chr7.1:31444038-31444057 | MS.gene98695:CDS | 30.0% | |
| AATGTTGTGGATGAAGATTT+GGG | - | chr7.1:31444342-31444361 | MS.gene98695:intron | 30.0% | |
| AGATAAGGAAATGTATGAGA+AGG | - | chr7.1:31444455-31444474 | MS.gene98695:intron | 30.0% | |
| ATGAAATGAAATTCGATAGC+TGG | + | chr7.1:31445718-31445737 | None:intergenic | 30.0% | |
| ATTTCACTGTAATTAGTGTC+CGG | + | chr7.1:31444869-31444888 | None:intergenic | 30.0% | |
| CAAAATTGATCTATGAAGCA+CGG | - | chr7.1:31445952-31445971 | MS.gene98695:CDS | 30.0% | |
| CCATAATGATTATAACACAC+AGG | + | chr7.1:31444426-31444445 | None:intergenic | 30.0% | |
| CCTGTGTGTTATAATCATTA+TGG | - | chr7.1:31444423-31444442 | MS.gene98695:intron | 30.0% | |
| CTACACTATAGAAGTTGAAA+AGG | - | chr7.1:31446255-31446274 | MS.gene98695:CDS | 30.0% | |
| GACTATATAACGGTTACTTA+TGG | - | chr7.1:31445577-31445596 | MS.gene98695:intron | 30.0% | |
| TAACGGTTACTTATGGTTTA+AGG | - | chr7.1:31445584-31445603 | MS.gene98695:intron | 30.0% | |
| TCAAGATAACTATCCTGAAA+TGG | - | chr7.1:31444659-31444678 | MS.gene98695:intron | 30.0% | |
| TCTCAAATTATTAGCAGTCT+CGG | - | chr7.1:31444898-31444917 | MS.gene98695:CDS | 30.0% | |
| TCTGGTGAAATTAACAACAA+TGG | - | chr7.1:31444171-31444190 | MS.gene98695:CDS | 30.0% | |
| TTATGGTGTGTTCAAAGATA+AGG | - | chr7.1:31444440-31444459 | MS.gene98695:intron | 30.0% | |
| TTCCATTAATGTTGTGACTA+TGG | + | chr7.1:31444043-31444062 | None:intergenic | 30.0% | |
| TTTGTGATTGTTTCCTTTCT+AGG | - | chr7.1:31445263-31445282 | MS.gene98695:CDS | 30.0% | |
| ! | AAGCTTTTACAGTTTAAACC+TGG | - | chr7.1:31444546-31444565 | MS.gene98695:intron | 30.0% |
| ! | CACTAATAAAGTGTTTGCTT+TGG | - | chr7.1:31445659-31445678 | MS.gene98695:intron | 30.0% |
| ! | GAAATGTATGAGAAGGTTTT+TGG | - | chr7.1:31444462-31444481 | MS.gene98695:intron | 30.0% |
| ! | GATTCAAGTTACTGATCTTA+AGG | - | chr7.1:31444584-31444603 | MS.gene98695:intron | 30.0% |
| ! | TCACTATTTGTTGATTAGAG+TGG | - | chr7.1:31446151-31446170 | MS.gene98695:CDS | 30.0% |
| ! | TTAGTTCTTTGAGTCAGAAA+TGG | + | chr7.1:31445107-31445126 | None:intergenic | 30.0% |
| ! | TTTCTTGGAGTTTCTAGAAA+TGG | + | chr7.1:31443994-31444013 | None:intergenic | 30.0% |
| ! | TTTTACAGTTTAAACCTGGT+GGG | - | chr7.1:31444550-31444569 | MS.gene98695:intron | 30.0% |
| !! | AAAAGCATTGAAACAGTTGA+AGG | - | chr7.1:31444134-31444153 | MS.gene98695:CDS | 30.0% |
| !! | AGTTGAAGAAGTTTTTGAGA+TGG | - | chr7.1:31444496-31444515 | MS.gene98695:intron | 30.0% |
| !! | GTTGATAACGTTCAAATTTG+TGG | - | chr7.1:31445816-31445835 | MS.gene98695:CDS | 30.0% |
| !!! | CATGGCTTGTTTTGTTATTT+TGG | - | chr7.1:31444756-31444775 | MS.gene98695:intron | 30.0% |
| !!! | GTTCTTTTGTTTGGTTTTGA+GGG | + | chr7.1:31444021-31444040 | None:intergenic | 30.0% |
| !!! | TTTCAATGCTTTTTTCTCAG+AGG | + | chr7.1:31444127-31444146 | None:intergenic | 30.0% |
| AAGGAAAAGCTCTTAACTTC+TGG | - | chr7.1:31444153-31444172 | MS.gene98695:CDS | 35.0% | |
| ACGTCGGTCATTGAAAATAT+AGG | - | chr7.1:31446009-31446028 | MS.gene98695:CDS | 35.0% | |
| AGCAAAAGTAAAGCCTAGAA+AGG | + | chr7.1:31445279-31445298 | None:intergenic | 35.0% | |
| AGGCTTAATTGCATATCAGA+TGG | + | chr7.1:31446433-31446452 | None:intergenic | 35.0% | |
| AGTTGAAAAACCTGAAATCG+GGG | - | chr7.1:31445794-31445813 | MS.gene98695:CDS | 35.0% | |
| ATATGCCTAAGAGTGAGTTA+AGG | - | chr7.1:31444607-31444626 | MS.gene98695:intron | 35.0% | |
| ATCAAAAGAAGCAGGCATAA+TGG | - | chr7.1:31446324-31446343 | MS.gene98695:CDS | 35.0% | |
| CAGTTGAAAAACCTGAAATC+GGG | - | chr7.1:31445793-31445812 | MS.gene98695:CDS | 35.0% | |
| CATACAAATAGAAGGAGTTG+AGG | - | chr7.1:31445519-31445538 | MS.gene98695:intron | 35.0% | |
| CTATAGAAGTTGAAAAGGCA+AGG | - | chr7.1:31446260-31446279 | MS.gene98695:CDS | 35.0% | |
| CTCAATCCACCATATTGAAT+TGG | + | chr7.1:31445424-31445443 | None:intergenic | 35.0% | |
| GATATGATACGACAATACGT+CGG | - | chr7.1:31445993-31446012 | MS.gene98695:CDS | 35.0% | |
| GCAGTTGAAAAACCTGAAAT+CGG | - | chr7.1:31445792-31445811 | MS.gene98695:CDS | 35.0% | |
| TAACAACAATGGTTCCATGT+GGG | - | chr7.1:31444182-31444201 | MS.gene98695:CDS | 35.0% | |
| TACAACATGCTGAAATACCA+TGG | + | chr7.1:31445071-31445090 | None:intergenic | 35.0% | |
| TATGCCTAAGAGTGAGTTAA+GGG | - | chr7.1:31444608-31444627 | MS.gene98695:intron | 35.0% | |
| TCATTCACATCAAAAGAAGC+AGG | - | chr7.1:31446316-31446335 | MS.gene98695:CDS | 35.0% | |
| TGTCAGTATCCGATTATTAG+CGG | - | chr7.1:31444923-31444942 | MS.gene98695:CDS | 35.0% | |
| TTAACAACAATGGTTCCATG+TGG | - | chr7.1:31444181-31444200 | MS.gene98695:CDS | 35.0% | |
| TTTACAGTTTAAACCTGGTG+GGG | - | chr7.1:31444551-31444570 | MS.gene98695:intron | 35.0% | |
| ! | AAGTTTGTGATCTCTAAGGA+AGG | - | chr7.1:31445131-31445150 | MS.gene98695:intron | 35.0% |
| ! | AGATTTTCATCAATGTGCCA+TGG | - | chr7.1:31445051-31445070 | MS.gene98695:intron | 35.0% |
| ! | CTTTTACAGTTTAAACCTGG+TGG | - | chr7.1:31444549-31444568 | MS.gene98695:intron | 35.0% |
| ! | GTGACTATGGTTCTTTTGTT+TGG | + | chr7.1:31444030-31444049 | None:intergenic | 35.0% |
| ! | TTTCTAGAAATGGTGTGCTT+AGG | + | chr7.1:31443984-31444003 | None:intergenic | 35.0% |
| !! | AGGCTTTACTTTTGCTGAAT+TGG | - | chr7.1:31445283-31445302 | MS.gene98695:CDS | 35.0% |
| !!! | CTTTTTTCTCAGAGGATTTG+AGG | + | chr7.1:31444119-31444138 | None:intergenic | 35.0% |
| !!! | GAAGAAGTTTTTGAGATGGA+GGG | - | chr7.1:31444500-31444519 | MS.gene98695:intron | 35.0% |
| !!! | GGTTCTTTTGTTTGGTTTTG+AGG | + | chr7.1:31444022-31444041 | None:intergenic | 35.0% |
| !!! | GTGTTGTTGCTTTTACTCAT+GGG | - | chr7.1:31444382-31444401 | MS.gene98695:intron | 35.0% |
| !!! | TGAAGAAGTTTTTGAGATGG+AGG | - | chr7.1:31444499-31444518 | MS.gene98695:intron | 35.0% |
| AACAACAATGGTTCCATGTG+GGG | - | chr7.1:31444183-31444202 | MS.gene98695:CDS | 40.0% | |
| ACACCAACACCGCTAATAAT+CGG | + | chr7.1:31444935-31444954 | None:intergenic | 40.0% | |
| ACTCATGGGTTTGATAGAGA+GGG | - | chr7.1:31444396-31444415 | MS.gene98695:intron | 40.0% | |
| AGCAGGCATAATGGTACTTT+CGG | - | chr7.1:31446333-31446352 | MS.gene98695:CDS | 40.0% | |
| ATCAAGTGGGAGATTGTAGT+TGG | - | chr7.1:31446181-31446200 | MS.gene98695:CDS | 40.0% | |
| CTTTCTTGGAGGAAAGAGTT+TGG | - | chr7.1:31444312-31444331 | MS.gene98695:intron | 40.0% | |
| GAGCAAGTTTGTGATCTCTA+AGG | - | chr7.1:31445127-31445146 | MS.gene98695:intron | 40.0% | |
| GCTTCTGAGTTCACTGTTAA+AGG | - | chr7.1:31445481-31445500 | MS.gene98695:intron | 40.0% | |
| GGTGTAAGTCCTATGAAACA+CGG | + | chr7.1:31444991-31445010 | None:intergenic | 40.0% | |
| TACTCATGGGTTTGATAGAG+AGG | - | chr7.1:31444395-31444414 | MS.gene98695:intron | 40.0% | |
| TATCCGATTATTAGCGGTGT+TGG | - | chr7.1:31444929-31444948 | MS.gene98695:CDS | 40.0% | |
| TCTGAGTTCACTGTTAAAGG+AGG | - | chr7.1:31445484-31445503 | MS.gene98695:intron | 40.0% | |
| TGTCTGTATCCGTGTTTCAT+AGG | - | chr7.1:31444979-31444998 | MS.gene98695:CDS | 40.0% | |
| TTAACAGTGAACTCAGAAGC+TGG | + | chr7.1:31445481-31445500 | None:intergenic | 40.0% | |
| TTGGGATTCAAAGAGCTTGA+AGG | - | chr7.1:31444360-31444379 | MS.gene98695:intron | 40.0% | |
| ! | CGACCTAGTGATTTTCAGAA+TGG | - | chr7.1:31445445-31445464 | MS.gene98695:intron | 40.0% |
| ! | GGACCATTCTGAAAATCACT+AGG | + | chr7.1:31445451-31445470 | None:intergenic | 40.0% |
| ! | GTGTAGCTAGCTTCTGAATT+TGG | + | chr7.1:31446241-31446260 | None:intergenic | 40.0% |
| ! | TGCTTGTGAAGTGTCTTTCT+TGG | - | chr7.1:31444298-31444317 | MS.gene98695:intron | 40.0% |
| ! | TGGGGTGTTTGTTTGATCAA+AGG | - | chr7.1:31444201-31444220 | MS.gene98695:CDS | 40.0% |
| ! | TTGTGAAGTGTCTTTCTTGG+AGG | - | chr7.1:31444301-31444320 | MS.gene98695:intron | 40.0% |
| ! | TTTCTCAGAGGATTTGAGGT+TGG | + | chr7.1:31444115-31444134 | None:intergenic | 40.0% |
| !! | GTTTGGTGCTGAAAATGTTG+TGG | - | chr7.1:31444329-31444348 | MS.gene98695:intron | 40.0% |
| !!! | GGTGTTGTTGCTTTTACTCA+TGG | - | chr7.1:31444381-31444400 | MS.gene98695:intron | 40.0% |
| !!! | GGTTTTGAGGGAGTTTTTCT+TGG | + | chr7.1:31444009-31444028 | None:intergenic | 40.0% |
| !!! | TGAACTCAGAAGCTGGTTTT+GGG | + | chr7.1:31445474-31445493 | None:intergenic | 40.0% |
| AAGTGGGAGATTGTAGTTGG+AGG | - | chr7.1:31446184-31446203 | MS.gene98695:CDS | 45.0% | |
| AATGGAACATGGCTAATCCG+AGG | + | chr7.1:31444845-31444864 | None:intergenic | 45.0% | |
| ACAGCCCTTAACTCACTCTT+AGG | + | chr7.1:31444615-31444634 | None:intergenic | 45.0% | |
| ACCTTACGAGCAACCATTTC+AGG | + | chr7.1:31444675-31444694 | None:intergenic | 45.0% | |
| ACGTTATCAACCCCGATTTC+AGG | + | chr7.1:31445807-31445826 | None:intergenic | 45.0% | |
| AGAGTGGTGCAACAATCAAG+TGG | - | chr7.1:31446167-31446186 | MS.gene98695:CDS | 45.0% | |
| ATCAAAGAATTCACCCCACC+AGG | + | chr7.1:31444567-31444586 | None:intergenic | 45.0% | |
| CTGTAATTAGTGTCCGGCAA+TGG | + | chr7.1:31444863-31444882 | None:intergenic | 45.0% | |
| GAGTGGTGCAACAATCAAGT+GGG | - | chr7.1:31446168-31446187 | MS.gene98695:CDS | 45.0% | |
| GATCAAACAAACACCCCACA+TGG | + | chr7.1:31444199-31444218 | None:intergenic | 45.0% | |
| TATGAAGCAGAGACACTCCT+CGG | - | chr7.1:31444825-31444844 | MS.gene98695:intron | 45.0% | |
| TCCTGAAATGGTTGCTCGTA+AGG | - | chr7.1:31444671-31444690 | MS.gene98695:intron | 45.0% | |
| TGATCTATGAAGCACGGACA+CGG | - | chr7.1:31445958-31445977 | MS.gene98695:CDS | 45.0% | |
| TGGTGTGCTTAGGATTGACA+TGG | + | chr7.1:31443974-31443993 | None:intergenic | 45.0% | |
| ! | AGGGTTCAAGTTCTTGAGAG+AGG | - | chr7.1:31444519-31444538 | MS.gene98695:intron | 45.0% |
| ! | GATTAGCCATGTTCCATTGC+CGG | - | chr7.1:31444847-31444866 | MS.gene98695:intron | 45.0% |
| ! | GGGTTCAAGTTCTTGAGAGA+GGG | - | chr7.1:31444520-31444539 | MS.gene98695:intron | 45.0% |
| !! | AGGAGTGTCTCTGCTTCATA+GGG | + | chr7.1:31444825-31444844 | None:intergenic | 45.0% |
| !! | GTGAACTCAGAAGCTGGTTT+TGG | + | chr7.1:31445475-31445494 | None:intergenic | 45.0% |
| !!! | AACTCAGAAGCTGGTTTTGG+GGG | + | chr7.1:31445472-31445491 | None:intergenic | 45.0% |
| !!! | GAACTCAGAAGCTGGTTTTG+GGG | + | chr7.1:31445473-31445492 | None:intergenic | 45.0% |
| ATGAAGCACGGACACGGTAT+GGG | - | chr7.1:31445964-31445983 | MS.gene98695:CDS | 50.0% | |
| CGGTCGATAACTCTGCTTCT+AGG | - | chr7.1:31446353-31446372 | MS.gene98695:CDS | 50.0% | |
| GGAGATTGTAGTTGGAGGCT+GGG | - | chr7.1:31446189-31446208 | MS.gene98695:CDS | 50.0% | |
| GGTGTGTCAGTATCTGTGTC+TGG | - | chr7.1:31444950-31444969 | MS.gene98695:CDS | 50.0% | |
| TAGTGTCCGGCAATGGAACA+TGG | + | chr7.1:31444856-31444875 | None:intergenic | 50.0% | |
| TATGAAGCACGGACACGGTA+TGG | - | chr7.1:31445963-31445982 | MS.gene98695:CDS | 50.0% | |
| TGTAGTTGGAGGCTGGGATT+TGG | - | chr7.1:31446195-31446214 | MS.gene98695:CDS | 50.0% | |
| !! | GAGGAGTGTCTCTGCTTCAT+AGG | + | chr7.1:31444826-31444845 | None:intergenic | 50.0% |
| GGGAGATTGTAGTTGGAGGC+TGG | - | chr7.1:31446188-31446207 | MS.gene98695:CDS | 55.0% | |
| TGAAGCACGGACACGGTATG+GGG | - | chr7.1:31445965-31445984 | MS.gene98695:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 31443946 | 31446465 | 31443946 | ID=MS.gene98695 |
| chr7.1 | mRNA | 31443946 | 31446465 | 31443946 | ID=MS.gene98695.t1;Parent=MS.gene98695 |
| chr7.1 | exon | 31445719 | 31446465 | 31445719 | ID=MS.gene98695.t1.exon1;Parent=MS.gene98695.t1 |
| chr7.1 | CDS | 31445719 | 31446465 | 31445719 | ID=cds.MS.gene98695.t1;Parent=MS.gene98695.t1 |
| chr7.1 | exon | 31445234 | 31445358 | 31445234 | ID=MS.gene98695.t1.exon2;Parent=MS.gene98695.t1 |
| chr7.1 | CDS | 31445234 | 31445358 | 31445234 | ID=cds.MS.gene98695.t1;Parent=MS.gene98695.t1 |
| chr7.1 | exon | 31444871 | 31445012 | 31444871 | ID=MS.gene98695.t1.exon3;Parent=MS.gene98695.t1 |
| chr7.1 | CDS | 31444871 | 31445012 | 31444871 | ID=cds.MS.gene98695.t1;Parent=MS.gene98695.t1 |
| chr7.1 | exon | 31443946 | 31444242 | 31443946 | ID=MS.gene98695.t1.exon4;Parent=MS.gene98695.t1 |
| chr7.1 | CDS | 31443946 | 31444242 | 31443946 | ID=cds.MS.gene98695.t1;Parent=MS.gene98695.t1 |
| Gene Sequence |
| Protein sequence |
