AlfalfaGEDB | MS.gene051478

M. sativa cultivar XinJiangDaYe / MS.gene051478

KEGG: -
GO: GO:0003674 GO:0003824 GO:0009055 GO:0016491
PFAM: PF02298.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051478.t1	AFK38628.1	86.3	183	25	0	5	187	2	184	9.30E-81	309.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051478.t1	Q9SK27	49.2	181	82	4	4	184	8	178	6.8e-40	165.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051478.t1	I3SED6	86.3	183	25	0	5	187	2	184	6.7e-81	309.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049418	MS.gene051478	0.852524	4.36E-61	-1.69E-46
MS.gene049989	MS.gene051478	0.812864	3.42E-51	-1.69E-46
MS.gene050297	MS.gene051478	0.831889	1.29E-55	-1.69E-46
MS.gene050310	MS.gene051478	0.840965	6.33E-58	-1.69E-46
MS.gene05092	MS.gene051478	0.806326	8.69E-50	-1.69E-46
MS.gene051067	MS.gene051478	0.802718	4.91E-49	-1.69E-46
MS.gene051263	MS.gene051478	0.858502	7.88E-63	-1.69E-46
MS.gene051478	MS.gene051648	0.803977	2.69E-49	-1.69E-46
MS.gene051478	MS.gene053144	0.818905	1.54E-52	-1.69E-46
MS.gene051478	MS.gene053536	0.824203	9.17E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene006553	MS.gene051478	PPI
MS.gene032997	MS.gene051478	PPI
MS.gene051478	MS.gene031754	PPI
MS.gene051478	MS.gene038783	PPI
MS.gene051478	MS.gene065888	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051478.t1	MTR_1g014120	94.652	187	7	1	1	187	1	184	1.63e-108	308
MS.gene051478.t1	MTR_3g105930	64.474	152	47	3	25	176	24	168	7.20e-64	195
MS.gene051478.t1	MTR_7g090170	56.757	148	40	4	25	172	24	147	1.19e-49	157
MS.gene051478.t1	MTR_8g463180	46.281	121	62	2	12	132	8	125	1.52e-35	126
MS.gene051478.t1	MTR_2g079030	42.763	152	83	3	10	161	8	155	1.19e-34	128
MS.gene051478.t1	MTR_4g081100	49.541	109	54	1	24	132	28	135	3.67e-34	120
MS.gene051478.t1	MTR_6g022170	48.182	110	54	2	21	129	26	133	1.64e-31	112
MS.gene051478.t1	MTR_2g090580	38.286	175	88	4	30	187	29	200	1.94e-29	108
MS.gene051478.t1	MTR_4g078410	44.615	130	68	3	25	153	22	148	2.52e-29	107
MS.gene051478.t1	MTR_2g090575	41.818	165	77	7	11	163	11	168	2.76e-29	111

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051478.t1	AT4G31840	50.000	176	77	3	12	187	11	175	2.77e-57	178
MS.gene051478.t1	AT2G25060	50.286	175	75	5	11	184	15	178	6.49e-55	172
MS.gene051478.t1	AT5G25090	53.279	122	57	0	11	132	9	130	3.88e-47	152
MS.gene051478.t1	AT4G30590	53.600	125	54	1	12	132	8	132	1.96e-45	148
MS.gene051478.t1	AT5G57920	44.079	152	82	3	26	177	53	201	1.06e-43	145
MS.gene051478.t1	AT5G57920	44.079	152	82	3	26	177	21	169	1.10e-43	144
MS.gene051478.t1	AT5G57920	44.079	152	82	3	26	177	20	168	1.20e-43	144
MS.gene051478.t1	AT2G23990	51.773	141	55	3	14	150	10	141	6.31e-42	140
MS.gene051478.t1	AT2G23990	45.625	160	55	4	14	150	10	160	3.14e-37	129
MS.gene051478.t1	AT3G20570	41.104	163	82	5	12	164	15	173	2.01e-35	123

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Find 44 sgRNAs with CRISPR-Local

Find 66 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGTTGCACCACTTGT+TGG	0.440200	1.3:-8182322	None:intergenic
AAAAGTGAAAATTACTTAGA+TGG	0.435763	1.3:-8181640	None:intergenic
AAAGTGAGATTTGATCATTC+TGG	0.347650	1.3:+8182133	MS.gene051478:CDS
AATCTGATTCTCTCAACAAA+TGG	0.402045	1.3:+8181588	MS.gene051478:CDS
ACAAATGGGCTTCAAGTGTT+CGG	0.440098	1.3:+8181603	MS.gene051478:CDS
ACTTCAGCTGGTGAAGGTGC+TGG	0.517037	1.3:-8182265	None:intergenic
AGAAAAGGGTCACTGTGAGA+AGG	0.575414	1.3:+8182177	MS.gene051478:CDS
AGAGAATCAGATTCCGAAGA+AGG	0.516269	1.3:-8181578	None:intergenic
ATCTGATTCTCTCAACAAAT+GGG	0.481996	1.3:+8181589	MS.gene051478:CDS
CCATCAAACACTACAATGAT+GGG	0.517725	1.3:+8182104	MS.gene051478:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACAAAATACCAAGATGG+TGG	-	chr1.3:8181900-8181919	None:intergenic	30.0%
AAAGTGAGATTTGATCATTC+TGG	+	chr1.3:8182133-8182152	MS.gene051478:CDS	30.0%
AATCTGATTCTCTCAACAAA+TGG	+	chr1.3:8181588-8181607	MS.gene051478:CDS	30.0%
ATCTGATTCTCTCAACAAAT+GGG	+	chr1.3:8181589-8181608	MS.gene051478:CDS	30.0%
CCATCAAACACTACAATGAT+GGG	+	chr1.3:8182104-8182123	MS.gene051478:CDS	35.0%
CCATCATTGTAGTGTTTGAT+GGG	-	chr1.3:8182106-8182125	None:intergenic	35.0%
TACTACATCAGTGGAGAAAA+GGG	+	chr1.3:8182163-8182182	MS.gene051478:CDS	35.0%
TCAGTTTGGAAATATGAAGC+TGG	+	chr1.3:8182022-8182041	MS.gene051478:intron	35.0%
AAAACAGTTGCACCACTTGT+TGG	-	chr1.3:8182325-8182344	None:intergenic	40.0%
AGAGAATCAGATTCCGAAGA+AGG	-	chr1.3:8181581-8181600	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	8181461	8182402	8181461	ID=MS.gene051478
chr1.3	mRNA	8181461	8182402	8181461	ID=MS.gene051478.t1;Parent=MS.gene051478
chr1.3	exon	8181461	8181647	8181461	ID=MS.gene051478.t1.exon1;Parent=MS.gene051478.t1
chr1.3	CDS	8181461	8181647	8181461	ID=cds.MS.gene051478.t1;Parent=MS.gene051478.t1
chr1.3	exon	8182026	8182402	8182026	ID=MS.gene051478.t1.exon2;Parent=MS.gene051478.t1
chr1.3	CDS	8182026	8182402	8182026	ID=cds.MS.gene051478.t1;Parent=MS.gene051478.t1

Gene Sequence

>MS.gene051478

ATGGCTGGTTCATCTTCTTCATCATCTTGTTCTCTTTTGGTTCTTTTTGTTCTCTTTGGTTGTGCTTTTGCAGCTAAGGATATCTTGCTTGGTGGCAAAACTGATGCATGGAAGGTTCCTTCTTCGGAATCTGATTCTCTCAACAAATGGGCTTCAAGTGTTCGGTTTCAAGTTGGAGACCATCTAAGTAATTTTCACTTTTTCATTAATTTTTTCCTTTTTTATCACTAAAAATTCAATCTTTATGTTGATTTTTTCCTTAATTATCAGTAAAAATTCAATCTTTATGTTGATGTTTTCATGATCTTAGTAATTTTTATTCCTTAAAATTGTTTCTTTATTGTTTATGAATCAATTTTTTTTATTTATTTATTTTTTTTTTTACATTTTCATCATCTTGGTAATTTTATTTCCAAAACCCAATTTTTTTATATTTCCACCATCTTGGTATTTTGTTTTCAAAATTTTATAATTTATTTTGTTGATAAAAATCCAATTTTTATTTTTATGTGATGTGAGTAAGAGTAACCACTAACTACTTTATTGTTCATATTTTTGTTCTCAGTTTGGAAATATGAAGCTGGAAAAGATTCTGTTTTGCAAGTGAGTAAGGAAGATTATGATAGCTGCAACACCTCAAAACCCATCAAACACTACAATGATGGGAACACTAAAGTGAGATTTGATCATTCTGGTCCATACTACTACATCAGTGGAGAAAAGGGTCACTGTGAGAAGGGTCAGAAGCTTACTGTGGTTGTCATGAGTCTAAGGGGGGGAAGTAGGCCCATTGTTGCTTTTTCACCAGCACCTTCACCAGCTGAAGTTGATGGTCCAGCTGGCTCAGCTGTTGCTCCAGCTCCAACAAGTGGTGCAACTGTTTTGCAAGGTGGTGGTGTATTTGTGGCTGTAGGAGTGTTTGTTGCCATGTGGCTTTTCTGA

Protein sequence

>MS.gene051478.t1

MAGSSSSSSCSLLVLFVLFGCAFAAKDILLGGKTDAWKVPSSESDSLNKWASSVRFQVGDHLIWKYEAGKDSVLQVSKEDYDSCNTSKPIKHYNDGNTKVRFDHSGPYYYISGEKGHCEKGQKLTVVVMSLRGGSRPIVAFSPAPSPAEVDGPAGSAVAPAPTSGATVLQGGGVFVAVGVFVAMWLF