AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene98737

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98737.t1 MTR_2g099140 95.935 492 20 0 1 492 38 529 0.0 984
MS.gene98737.t1 MTR_2g099140 95.859 483 20 0 10 492 33 515 0.0 965
MS.gene98737.t1 MTR_5g015390 32.237 456 247 9 25 458 43 458 5.23e-72 236
MS.gene98737.t1 MTR_1g108460 26.151 478 291 13 17 460 72 521 1.79e-39 150
MS.gene98737.t1 MTR_3g106510 23.391 466 307 11 21 457 67 511 1.26e-36 142
MS.gene98737.t1 MTR_2g450550 22.458 472 324 11 17 463 63 517 1.94e-36 141
MS.gene98737.t1 MTR_4g116290 22.863 468 320 8 17 463 41 488 2.10e-34 135
MS.gene98737.t1 MTR_2g450550 22.099 362 250 8 126 463 59 412 2.63e-29 119
MS.gene98737.t1 MTR_1g108460 27.132 387 218 14 17 369 72 428 7.74e-27 113
MS.gene98737.t1 MTR_2g450550 22.881 354 233 10 17 345 63 401 1.27e-23 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98737.t1 AT5G67550 27.564 468 313 7 25 474 39 498 9.46e-64 215
MS.gene98737.t1 AT2G12400 24.850 499 331 10 9 481 58 538 4.85e-42 157
MS.gene98737.t1 AT2G25270 25.319 470 293 15 21 457 75 519 6.38e-42 157
MS.gene98737.t1 AT1G71110 23.333 480 318 12 23 475 73 529 4.55e-35 138
MS.gene98737.t1 AT1G80540 19.831 474 346 10 7 457 55 517 1.19e-23 104
MS.gene98737.t1 AT1G80540 19.831 474 346 10 7 457 9 471 1.24e-23 104
MS.gene98737.t1 AT1G80540 19.284 363 265 8 118 457 7 364 7.73e-16 79.7

Find 73 sgRNAs with CRISPR-Local

Find 138 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCTTGATTTGAAGGAATT+TGG 0.148694 2.1:-5333051 None:intergenic
ACATCACCAACAAGAATTAT+TGG 0.207437 2.1:+5330634 MS.gene98737:CDS
TTGATATTCACTGGAGTATA+TGG 0.251671 2.1:+5330743 MS.gene98737:CDS
TCGGGTTGGTAGGTATAATT+TGG 0.268119 2.1:-5332486 None:intergenic
GAGCTTAAGCTGTTGTTATA+AGG 0.299992 2.1:-5332167 None:intergenic
ACAGGCTTGTTGTACTTTGC+TGG 0.301195 2.1:+5331948 MS.gene98737:intron
GTATTATGCTGGCTATTCTT+TGG 0.304357 2.1:+5331980 MS.gene98737:CDS
GGCTATTAACATGAGAAATA+TGG 0.305507 2.1:-5330921 None:intergenic
TTTAACTGCTCTTGATTTGA+AGG 0.331948 2.1:-5333058 None:intergenic
TTTGTATCCAAACAAGTAAA+AGG 0.335128 2.1:-5332706 None:intergenic
AACACAACAGAAGCATTAAA+AGG 0.338281 2.1:+5331181 MS.gene98737:CDS
TGATGCTTTACTAATTCCTT+TGG 0.344919 2.1:+5330898 MS.gene98737:CDS
ATTGAATGTGTATCCAAGTA+TGG 0.345176 2.1:+5332813 MS.gene98737:CDS
ATCTTAGCATATTTCTTCAT+AGG 0.370043 2.1:-5332901 None:intergenic
TACACTCCAATAATTCTTGT+TGG 0.372190 2.1:-5330640 None:intergenic
CCTATTCGTATAGTATTATC+TGG 0.379970 2.1:-5332516 None:intergenic
GCAACAGGGCTAGTTCTTGT+AGG 0.391851 2.1:+5331076 MS.gene98737:CDS
AGTATTATCTGGACAATTCT+CGG 0.408061 2.1:-5332505 None:intergenic
CATACAAAATTCCACATAGA+AGG 0.413531 2.1:-5330787 None:intergenic
AGTCATGAACATTGTTATCA+TGG 0.416314 2.1:+5332994 MS.gene98737:CDS
GGAGTATATGGATATGCAAT+TGG 0.424393 2.1:+5330755 MS.gene98737:CDS
TTGTAGTCTTTGATATTCAC+TGG 0.425080 2.1:+5330734 MS.gene98737:intron
TCTAACAAATGTTCCATACT+TGG 0.426331 2.1:-5332826 None:intergenic
CCAGATAATACTATACGAAT+AGG 0.430631 2.1:+5332516 MS.gene98737:CDS
ACTTGTTTGGATACAAATGA+TGG 0.450904 2.1:+5332712 MS.gene98737:CDS
CATTGTTATCATGGTTCAGA+TGG 0.453877 2.1:+5333003 MS.gene98737:CDS
TGGGTAGGAATGGTGTTCCT+TGG 0.455580 2.1:+5332928 MS.gene98737:CDS
GATTTGTGTAGAGTTGCAAC+AGG 0.456871 2.1:+5331061 MS.gene98737:intron
TTTCTGGTGTACTACGGTTA+AGG 0.464706 2.1:+5331808 MS.gene98737:CDS
GGTGTTCCTTGGAGTGATCA+TGG 0.465850 2.1:+5332939 MS.gene98737:CDS
GCACTAAATTCAGATAGAAC+TGG 0.472426 2.1:-5332224 None:intergenic
TATGAAGAAATATGCTAAGA+TGG 0.477004 2.1:+5332903 MS.gene98737:CDS
TAATTTGGTGGCGCTGAGAA+AGG 0.479612 2.1:-5332471 None:intergenic
GTATTATCTGGACAATTCTC+GGG 0.490684 2.1:-5332504 None:intergenic
AGGCATGGAGAGTAACTTGA+TGG 0.496619 2.1:+5331201 MS.gene98737:CDS
GTTCTATCTGAATTTAGTGC+TGG 0.497245 2.1:+5332227 MS.gene98737:CDS
CAACAGGGCTAGTTCTTGTA+GGG 0.506049 2.1:+5331077 MS.gene98737:CDS
GGTTGTTGACAGTATTATGC+TGG 0.511614 2.1:+5331969 MS.gene98737:CDS
TGAGCAATTCTTGACATGGA+AGG 0.514152 2.1:-5332193 None:intergenic
TATCTATAATCTTGTTAATG+AGG 0.517870 2.1:+5332250 MS.gene98737:CDS
TACTTGGATACACATTCAAT+AGG 0.517880 2.1:-5332810 None:intergenic
AGAAATATGCTAAGATGGCA+TGG 0.519247 2.1:+5332908 MS.gene98737:CDS
AATAGGCGCCTTATCAGTAA+AGG 0.523635 2.1:+5331319 MS.gene98737:CDS
GGTTGGTAGGTATAATTTGG+TGG 0.528341 2.1:-5332483 None:intergenic
GTCAGAACAGATTACACAAA+GGG 0.530197 2.1:+5330554 MS.gene98737:CDS
CATAATCAAAACAGCAAACA+AGG 0.542949 2.1:+5331141 MS.gene98737:CDS
AGAAGCCTCAACATTAACAT+TGG 0.547079 2.1:-5331227 None:intergenic
CTTGTTTGGATACAAATGAT+GGG 0.553416 2.1:+5332713 MS.gene98737:CDS
ATTTCTTCATAGGCTTGCAA+TGG 0.560254 2.1:-5332891 None:intergenic
AACAGAAGCATTAAAAGGCA+TGG 0.560327 2.1:+5331186 MS.gene98737:CDS
GAACAGTTTCTGGTGTACTA+CGG 0.561972 2.1:+5331802 MS.gene98737:intron
TATCTGGACAATTCTCGGGT+TGG 0.582340 2.1:-5332500 None:intergenic
CTGGTGTACTACGGTTAAGG+AGG 0.583051 2.1:+5331811 MS.gene98737:CDS
TGGACAATTCTCGGGTTGGT+AGG 0.583599 2.1:-5332496 None:intergenic
TCACAACTCTTGTAATTACA+AGG 0.584647 2.1:-5330878 None:intergenic
TCATGGTTCAGATGGTTCTG+TGG 0.587485 2.1:+5333011 MS.gene98737:CDS
AAGGGATAATACAATTAGAG+TGG 0.592143 2.1:+5330572 MS.gene98737:CDS
GAAATATGCTAAGATGGCAT+GGG 0.595556 2.1:+5332909 MS.gene98737:CDS
AACATGAGAAATATGGCCAA+AGG 0.602955 2.1:-5330914 None:intergenic
GCTTTGAGCAATTCTTGACA+TGG 0.606847 2.1:-5332197 None:intergenic
GAATTTGGTACTTCACAATG+AGG 0.631175 2.1:-5333036 None:intergenic
TGGTGTACTACGGTTAAGGA+GGG 0.631651 2.1:+5331812 MS.gene98737:CDS
TATGCTAAGATGGCATGGGT+AGG 0.632516 2.1:+5332913 MS.gene98737:CDS
AAGGATTGCAAACAAGAACA+AGG 0.637380 2.1:-5332452 None:intergenic
AATGATGGGAGTTGTGACAA+TGG 0.638209 2.1:+5332727 MS.gene98737:CDS
ACAAAACCATGATCACTCCA+AGG 0.642179 2.1:-5332945 None:intergenic
TAGGCTTGCAATGGTCAACA+AGG 0.643609 2.1:-5332882 None:intergenic
TAAGATGGCATGGGTAGGAA+TGG 0.645876 2.1:+5332918 MS.gene98737:CDS
GGAATGTTATGCCTTCTATG+TGG 0.645924 2.1:+5330776 MS.gene98737:CDS
GGAAGCCAATGTTAATGTTG+AGG 0.652341 2.1:+5331222 MS.gene98737:CDS
ACGAATAGGTGACATTCCAA+AGG 0.664454 2.1:+5332530 MS.gene98737:CDS
ATTTGTGTAGAGTTGCAACA+GGG 0.687136 2.1:+5331062 MS.gene98737:intron
TGTCAGAACAGATTACACAA+AGG 0.693803 2.1:+5330553 MS.gene98737:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATTACTATGTAATTA+TGG - chr2.1:5332052-5332071 None:intergenic 10.0%
!!! GTAATATTTTTATAAAGTAG+AGG + chr2.1:5332062-5332081 MS.gene98737:intron 15.0%
!!! TACTTTTTGAAATTATCTAA+TGG - chr2.1:5330600-5330619 None:intergenic 15.0%
!! AAAATGAATGAAAAATTGCA+TGG + chr2.1:5331614-5331633 MS.gene98737:intron 20.0%
!! ACATTAATATAGAACTCATT+TGG - chr2.1:5332315-5332334 None:intergenic 20.0%
!! TATATAGGACTAAAGTTAAA+TGG + chr2.1:5332606-5332625 MS.gene98737:intron 20.0%
!! TATCTATAATCTTGTTAATG+AGG + chr2.1:5332250-5332269 MS.gene98737:CDS 20.0%
!! TGTAATTATGGTAATAAGAA+AGG - chr2.1:5332040-5332059 None:intergenic 20.0%
!! TTTACTATTTAAACAGTAGT+AGG - chr2.1:5331597-5331616 None:intergenic 20.0%
!! TTTCGTCATTAAAATTGTAA+TGG + chr2.1:5331373-5331392 MS.gene98737:intron 20.0%
!!! AATGTGATCATTCTTTTTTA+AGG + chr2.1:5332675-5332694 MS.gene98737:intron 20.0%
!!! TGTTCATAAACTATTGTTTT+TGG + chr2.1:5332332-5332351 MS.gene98737:intron 20.0%
! AAGGTTTATCATCACAAAAA+TGG + chr2.1:5330830-5330849 MS.gene98737:CDS 25.0%
! AATGGAATAAATTTCATTGC+AGG + chr2.1:5331641-5331660 MS.gene98737:intron 25.0%
! AATTTCAACGACTAAATTGA+CGG + chr2.1:5331523-5331542 MS.gene98737:intron 25.0%
! ACATGATTCTCATATAATGT+TGG + chr2.1:5331769-5331788 MS.gene98737:intron 25.0%
! ATCACATTGTTAATTCATCT+TGG - chr2.1:5332663-5332682 None:intergenic 25.0%
! ATCTTAGCATATTTCTTCAT+AGG - chr2.1:5332904-5332923 None:intergenic 25.0%
! CTCTAATGATTAATCACTAA+AGG - chr2.1:5330974-5330993 None:intergenic 25.0%
! GTCATTAAAATTGTAATGGT+CGG + chr2.1:5331377-5331396 MS.gene98737:intron 25.0%
! TACTCCAACATGAAATTAAT+AGG - chr2.1:5332373-5332392 None:intergenic 25.0%
! TATGAAGAAATATGCTAAGA+TGG + chr2.1:5332903-5332922 MS.gene98737:CDS 25.0%
! TGTATCAATCATTATGTGTA+TGG - chr2.1:5331752-5331771 None:intergenic 25.0%
! TTTAGTCCTTGAAATTGAAA+AGG - chr2.1:5331550-5331569 None:intergenic 25.0%
! TTTGTATCCAAACAAGTAAA+AGG - chr2.1:5332709-5332728 None:intergenic 25.0%
!! AAATTTTGCACCACAATTTA+AGG - chr2.1:5331443-5331462 None:intergenic 25.0%
!! AATTTTCATTGAACAGTTTC+TGG + chr2.1:5331792-5331811 MS.gene98737:intron 25.0%
!! AATTTTGCACCACAATTTAA+GGG - chr2.1:5331442-5331461 None:intergenic 25.0%
!! AGAATGCATCTTTTACAATT+TGG - chr2.1:5332855-5332874 None:intergenic 25.0%
!! ATTAAAGCCTTTTACTTGTT+TGG + chr2.1:5332699-5332718 MS.gene98737:CDS 25.0%
!! GATAATTTCAAAAAGTACAG+AGG + chr2.1:5330603-5330622 MS.gene98737:CDS 25.0%
!!! AACTTTTTTGGATTTTTGGT+TGG + chr2.1:5332392-5332411 MS.gene98737:intron 25.0%
!!! AGTTATTTTGCTAATCACAA+AGG + chr2.1:5330811-5330830 MS.gene98737:CDS 25.0%
!!! CGACACATACAATTTTTTTA+TGG + chr2.1:5331006-5331025 MS.gene98737:intron 25.0%
!!! GAGTAACTTTTTTGGATTTT+TGG + chr2.1:5332388-5332407 MS.gene98737:intron 25.0%
!!! GATTATGTTTTGGACTATAA+AGG + chr2.1:5332969-5332988 MS.gene98737:CDS 25.0%
!!! TCATCTTGGTCTTATAATTT+AGG - chr2.1:5332649-5332668 None:intergenic 25.0%
!!! TGAAATTTTAGCATACTTAC+AGG - chr2.1:5331845-5331864 None:intergenic 25.0%
!!! TGGTTTTGTTGATTATGTTT+TGG + chr2.1:5332959-5332978 MS.gene98737:CDS 25.0%
!!! TTAACATCGTGTTTTGATTT+TGG + chr2.1:5331725-5331744 MS.gene98737:intron 25.0%
AAATGCAAGCTCAGAAAAAT+AGG + chr2.1:5331302-5331321 MS.gene98737:CDS 30.0%
AAGGGATAATACAATTAGAG+TGG + chr2.1:5330572-5330591 MS.gene98737:CDS 30.0%
AATTAATAGGTCCAGTATGT+TGG - chr2.1:5332360-5332379 None:intergenic 30.0%
ACATCACCAACAAGAATTAT+TGG + chr2.1:5330634-5330653 MS.gene98737:CDS 30.0%
ACTTGTTTGGATACAAATGA+TGG + chr2.1:5332712-5332731 MS.gene98737:CDS 30.0%
AGTATTATCTGGACAATTCT+CGG - chr2.1:5332508-5332527 None:intergenic 30.0%
AGTCATGAACATTGTTATCA+TGG + chr2.1:5332994-5333013 MS.gene98737:CDS 30.0%
ATTGAATGTGTATCCAAGTA+TGG + chr2.1:5332813-5332832 MS.gene98737:CDS 30.0%
CATAATCAAAACAGCAAACA+AGG + chr2.1:5331141-5331160 MS.gene98737:CDS 30.0%
CATACAAAATTCCACATAGA+AGG - chr2.1:5330790-5330809 None:intergenic 30.0%
CCAGATAATACTATACGAAT+AGG + chr2.1:5332516-5332535 MS.gene98737:CDS 30.0%
CCTATTCGTATAGTATTATC+TGG - chr2.1:5332519-5332538 None:intergenic 30.0%
CTTGTTTGGATACAAATGAT+GGG + chr2.1:5332713-5332732 MS.gene98737:CDS 30.0%
GAAAAATTGCATGGAAGTAA+TGG + chr2.1:5331623-5331642 MS.gene98737:intron 30.0%
GAAGTTAGACTCAAAAAAGA+GGG - chr2.1:5330677-5330696 None:intergenic 30.0%
GAATTTAGTCCCTTAAATTG+TGG + chr2.1:5331430-5331449 MS.gene98737:intron 30.0%
GGCTATTAACATGAGAAATA+TGG - chr2.1:5330924-5330943 None:intergenic 30.0%
GTTTATCATCACAAAAATGG+AGG + chr2.1:5330833-5330852 MS.gene98737:CDS 30.0%
GTTTCTCAAACTTGTGAAAT+TGG + chr2.1:5331408-5331427 MS.gene98737:intron 30.0%
TACACTCCAATAATTCTTGT+TGG - chr2.1:5330643-5330662 None:intergenic 30.0%
TACTTGGATACACATTCAAT+AGG - chr2.1:5332813-5332832 None:intergenic 30.0%
TCACAACTCTTGTAATTACA+AGG - chr2.1:5330881-5330900 None:intergenic 30.0%
TCTAACAAATGTTCCATACT+TGG - chr2.1:5332829-5332848 None:intergenic 30.0%
TGAAGTTAGACTCAAAAAAG+AGG - chr2.1:5330678-5330697 None:intergenic 30.0%
TGATGCTTTACTAATTCCTT+TGG + chr2.1:5330898-5330917 MS.gene98737:CDS 30.0%
TGGACCTATTAATTTCATGT+TGG + chr2.1:5332366-5332385 MS.gene98737:intron 30.0%
TTAGTCCTATATAAACAGCT+CGG - chr2.1:5332599-5332618 None:intergenic 30.0%
TTGATATTCACTGGAGTATA+TGG + chr2.1:5330743-5330762 MS.gene98737:CDS 30.0%
TTGTAGTCTTTGATATTCAC+TGG + chr2.1:5330734-5330753 MS.gene98737:intron 30.0%
! AATTTCAAAAAGTACAGAGG+AGG + chr2.1:5330606-5330625 MS.gene98737:CDS 30.0%
! CTTCTATGTGGAATTTTGTA+TGG + chr2.1:5330788-5330807 MS.gene98737:CDS 30.0%
! TTTAACTGCTCTTGATTTGA+AGG - chr2.1:5333061-5333080 None:intergenic 30.0%
!! AACACAACAGAAGCATTAAA+AGG + chr2.1:5331181-5331200 MS.gene98737:CDS 30.0%
!! TTTTCAAGCCTTTACTGATA+AGG - chr2.1:5331330-5331349 None:intergenic 30.0%
!!! TCATGTTGGAGTAACTTTTT+TGG + chr2.1:5332380-5332399 MS.gene98737:intron 30.0%
AACATGAGAAATATGGCCAA+AGG - chr2.1:5330917-5330936 None:intergenic 35.0%
AAGGATTGCAAACAAGAACA+AGG - chr2.1:5332455-5332474 None:intergenic 35.0%
ACAATCCGAGCTGTTTATAT+AGG + chr2.1:5332591-5332610 MS.gene98737:intron 35.0%
ACTCTTCTATCGTATACCTT+TGG - chr2.1:5332549-5332568 None:intergenic 35.0%
AGAAATATGCTAAGATGGCA+TGG + chr2.1:5332908-5332927 MS.gene98737:CDS 35.0%
AGAAGCCTCAACATTAACAT+TGG - chr2.1:5331230-5331249 None:intergenic 35.0%
ATTTCTTCATAGGCTTGCAA+TGG - chr2.1:5332894-5332913 None:intergenic 35.0%
ATTTGTGTAGAGTTGCAACA+GGG + chr2.1:5331062-5331081 MS.gene98737:intron 35.0%
CATTGTTATCATGGTTCAGA+TGG + chr2.1:5333003-5333022 MS.gene98737:CDS 35.0%
GAAATATGCTAAGATGGCAT+GGG + chr2.1:5332909-5332928 MS.gene98737:CDS 35.0%
GAATTTGGTACTTCACAATG+AGG - chr2.1:5333039-5333058 None:intergenic 35.0%
GAGCTTAAGCTGTTGTTATA+AGG - chr2.1:5332170-5332189 None:intergenic 35.0%
GATTAATCACTAAAGGCTAG+AGG - chr2.1:5330967-5330986 None:intergenic 35.0%
GCACTAAATTCAGATAGAAC+TGG - chr2.1:5332227-5332246 None:intergenic 35.0%
GGAGTATATGGATATGCAAT+TGG + chr2.1:5330755-5330774 MS.gene98737:CDS 35.0%
GTATTATCTGGACAATTCTC+GGG - chr2.1:5332507-5332526 None:intergenic 35.0%
GTCAGAACAGATTACACAAA+GGG + chr2.1:5330554-5330573 MS.gene98737:CDS 35.0%
GTCGTTGAAATTTGCGAAAT+AGG - chr2.1:5331515-5331534 None:intergenic 35.0%
GTTCTATCTGAATTTAGTGC+TGG + chr2.1:5332227-5332246 MS.gene98737:CDS 35.0%
TAAACAGCTCGGATTGTATA+AGG - chr2.1:5332588-5332607 None:intergenic 35.0%
TCATGCATATACATCACTTG+AGG - chr2.1:5331036-5331055 None:intergenic 35.0%
TGTCAGAACAGATTACACAA+AGG + chr2.1:5330553-5330572 MS.gene98737:CDS 35.0%
! GCTCTTGATTTGAAGGAATT+TGG - chr2.1:5333054-5333073 None:intergenic 35.0%
! GTATTATGCTGGCTATTCTT+TGG + chr2.1:5331980-5331999 MS.gene98737:CDS 35.0%
!! AACAGAAGCATTAAAAGGCA+TGG + chr2.1:5331186-5331205 MS.gene98737:CDS 35.0%
!! CTTGCTGTAACAATTTTGTC+AGG + chr2.1:5331700-5331719 MS.gene98737:CDS 35.0%
!! CTTTTGCTACTCTTTTTCAC+AGG + chr2.1:5331930-5331949 MS.gene98737:intron 35.0%
!!! CTGAAGTTTTAGCTTCTGAA+TGG - chr2.1:5331114-5331133 None:intergenic 35.0%
!!! TGTTTTTGGATCCAACATAC+TGG + chr2.1:5332346-5332365 MS.gene98737:intron 35.0%
AATAGGCGCCTTATCAGTAA+AGG + chr2.1:5331319-5331338 MS.gene98737:CDS 40.0%
ACAAAACCATGATCACTCCA+AGG - chr2.1:5332948-5332967 None:intergenic 40.0%
ACGAATAGGTGACATTCCAA+AGG + chr2.1:5332530-5332549 MS.gene98737:CDS 40.0%
GATTTGTGTAGAGTTGCAAC+AGG + chr2.1:5331061-5331080 MS.gene98737:intron 40.0%
GCAAGGTTGAATGACTTACA+TGG - chr2.1:5330945-5330964 None:intergenic 40.0%
GGAAGCCAATGTTAATGTTG+AGG + chr2.1:5331222-5331241 MS.gene98737:CDS 40.0%
GGAATGTTATGCCTTCTATG+TGG + chr2.1:5330776-5330795 MS.gene98737:CDS 40.0%
GGTTGTTGACAGTATTATGC+TGG + chr2.1:5331969-5331988 MS.gene98737:CDS 40.0%
TGAGCAATTCTTGACATGGA+AGG - chr2.1:5332196-5332215 None:intergenic 40.0%
! AATGATGGGAGTTGTGACAA+TGG + chr2.1:5332727-5332746 MS.gene98737:CDS 40.0%
! GACGGACCTTTTCAATTTCA+AGG + chr2.1:5331541-5331560 MS.gene98737:intron 40.0%
! GCTTTGAGCAATTCTTGACA+TGG - chr2.1:5332200-5332219 None:intergenic 40.0%
! TTTCTGGTGTACTACGGTTA+AGG + chr2.1:5331808-5331827 MS.gene98737:CDS 40.0%
!! GAACAGTTTCTGGTGTACTA+CGG + chr2.1:5331802-5331821 MS.gene98737:intron 40.0%
!! GGTTGGTAGGTATAATTTGG+TGG - chr2.1:5332486-5332505 None:intergenic 40.0%
!! TCGGGTTGGTAGGTATAATT+TGG - chr2.1:5332489-5332508 None:intergenic 40.0%
!!! GGATTTTTGGTTGGTTGTCT+AGG + chr2.1:5332401-5332420 MS.gene98737:intron 40.0%
AGGCATGGAGAGTAACTTGA+TGG + chr2.1:5331201-5331220 MS.gene98737:CDS 45.0%
ATCACTAAAGGCTAGAGGCA+AGG - chr2.1:5330962-5330981 None:intergenic 45.0%
GGAGAGACAGTAGAGCAAAT+AGG - chr2.1:5331576-5331595 None:intergenic 45.0%
TAAGATGGCATGGGTAGGAA+TGG + chr2.1:5332918-5332937 MS.gene98737:CDS 45.0%
TAGGCTTGCAATGGTCAACA+AGG - chr2.1:5332885-5332904 None:intergenic 45.0%
TATCTGGACAATTCTCGGGT+TGG - chr2.1:5332503-5332522 None:intergenic 45.0%
TATGCTAAGATGGCATGGGT+AGG + chr2.1:5332913-5332932 MS.gene98737:CDS 45.0%
TGGTGTACTACGGTTAAGGA+GGG + chr2.1:5331812-5331831 MS.gene98737:CDS 45.0%
! TCATGGTTCAGATGGTTCTG+TGG + chr2.1:5333011-5333030 MS.gene98737:CDS 45.0%
!! ACAGGCTTGTTGTACTTTGC+TGG + chr2.1:5331948-5331967 MS.gene98737:intron 45.0%
!! CAACAGGGCTAGTTCTTGTA+GGG + chr2.1:5331077-5331096 MS.gene98737:CDS 45.0%
!! TAATTTGGTGGCGCTGAGAA+AGG - chr2.1:5332474-5332493 None:intergenic 45.0%
CTGGTGTACTACGGTTAAGG+AGG + chr2.1:5331811-5331830 MS.gene98737:CDS 50.0%
GGTGTTCCTTGGAGTGATCA+TGG + chr2.1:5332939-5332958 MS.gene98737:CDS 50.0%
TGGGTAGGAATGGTGTTCCT+TGG + chr2.1:5332928-5332947 MS.gene98737:CDS 50.0%
!! GCAACAGGGCTAGTTCTTGT+AGG + chr2.1:5331076-5331095 MS.gene98737:CDS 50.0%
!! TGGACAATTCTCGGGTTGGT+AGG - chr2.1:5332499-5332518 None:intergenic 50.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 5330516 5333095 5330516 ID=MS.gene98737
chr2.1 mRNA 5330516 5333095 5330516 ID=MS.gene98737.t1;Parent=MS.gene98737
chr2.1 exon 5330516 5330659 5330516 ID=MS.gene98737.t1.exon1;Parent=MS.gene98737.t1
chr2.1 CDS 5330516 5330659 5330516 ID=cds.MS.gene98737.t1;Parent=MS.gene98737.t1
chr2.1 exon 5330740 5330945 5330740 ID=MS.gene98737.t1.exon2;Parent=MS.gene98737.t1
chr2.1 CDS 5330740 5330945 5330740 ID=cds.MS.gene98737.t1;Parent=MS.gene98737.t1
chr2.1 exon 5331072 5331353 5331072 ID=MS.gene98737.t1.exon3;Parent=MS.gene98737.t1
chr2.1 CDS 5331072 5331353 5331072 ID=cds.MS.gene98737.t1;Parent=MS.gene98737.t1
chr2.1 exon 5331663 5331721 5331663 ID=MS.gene98737.t1.exon4;Parent=MS.gene98737.t1
chr2.1 CDS 5331663 5331721 5331663 ID=cds.MS.gene98737.t1;Parent=MS.gene98737.t1
chr2.1 exon 5331808 5331844 5331808 ID=MS.gene98737.t1.exon5;Parent=MS.gene98737.t1
chr2.1 CDS 5331808 5331844 5331808 ID=cds.MS.gene98737.t1;Parent=MS.gene98737.t1
chr2.1 exon 5331952 5332023 5331952 ID=MS.gene98737.t1.exon6;Parent=MS.gene98737.t1
chr2.1 CDS 5331952 5332023 5331952 ID=cds.MS.gene98737.t1;Parent=MS.gene98737.t1
chr2.1 exon 5332121 5332271 5332121 ID=MS.gene98737.t1.exon7;Parent=MS.gene98737.t1
chr2.1 CDS 5332121 5332271 5332121 ID=cds.MS.gene98737.t1;Parent=MS.gene98737.t1
chr2.1 exon 5332423 5332551 5332423 ID=MS.gene98737.t1.exon8;Parent=MS.gene98737.t1
chr2.1 CDS 5332423 5332551 5332423 ID=cds.MS.gene98737.t1;Parent=MS.gene98737.t1
chr2.1 exon 5332697 5333095 5332697 ID=MS.gene98737.t1.exon9;Parent=MS.gene98737.t1
chr2.1 CDS 5332697 5333095 5332697 ID=cds.MS.gene98737.t1;Parent=MS.gene98737.t1
Gene Sequence

>MS.gene98737

ATGAGAAGTACTATGTTTATGTTTGATTCAGATAATGTGTCAGAACAGATTACACAAAGGGATAATACAATTAGAGTGGATCCATTAGATAATTTCAAAAAGTACAGAGGAGGATTTGACATCACCAACAAGAATTATTGGAGTGTAAATTTCTATCTCCCTCTTTTTTGAGTCTAACTTCAAACATCAATGATATTGTTAACATTTCATTAATGTTTTTGTAGTCTTTGATATTCACTGGAGTATATGGATATGCAATTGGAATGTTATGCCTTCTATGTGGAATTTTGTATGGAGTTATTTTGCTAATCACAAAGGTTTATCATCACAAAAATGGAGGAAAAAGAATGAAGAAAGTGTTTCCTTGTAATTACAAGAGTTGTGATGCTTTACTAATTCCTTTGGCCATATTTCTCATGTTAATAGCCATGTAAGTCATTCAACCTTGCCTCTAGCCTTTAGTGATTAATCATTAGAGATTACGTAAAATCGACACATACAATTTTTTTATGGTTTTCCTCAAGTGATGTATATGCATGATTGTTGATTTGTGTAGAGTTGCAACAGGGCTAGTTCTTGTAGGGAGTGCAAGATTCCATTCAGAAGCTAAAACTTCAGTTGATATCATAATCAAAACAGCAAACAAGGCATCAGAAACAATACACAACACAACAGAAGCATTAAAAGGCATGGAGAGTAACTTGATGGAAGCCAATGTTAATGTTGAGGCTTCTTCAAATCTTGACTCTACAGCTGAAAAACTTGATGATGCATCTGTAAATATTGAAATGCAAGCTCAGAAAAATAGGCGCCTTATCAGTAAAGGCTTGAAAATAGTGTAAGAGTCACTAACTCATTTTCGTCATTAAAATTGTAATGGTCGGTCAATTCAGTTTCTCAAACTTGTGAAATTGGAATTTAGTCCCTTAAATTGTGGTGCAAAATTTGAAAAAATGAGTAAATTGTTTGACATTTTTAAATTTAAGAGACTGAATTCCTATTTCGCAAATTTCAACGACTAAATTGACGGACCTTTTCAATTTCAAGGACTAAAACGCCTATTTGCTCTACTGTCTCTCCTACTACTGTTTAAATAGTAAAATGAATGAAAAATTGCATGGAAGTAATGGAATAAATTTCATTGCAGGTTTATAACTACTACAGTGATCATGTGCTTGAACTTGCTTGCTGTAACAATTTTGTCAGGTATTAACATCGTGTTTTGATTTTGGACCATACACATAATGATTGATACATGATTCTCATATAATGTTGGAATTTTCATTGAACAGTTTCTGGTGTACTACGGTTAAGGAGGGCATTGTACCTGTAAGTATGCTAAAATTTCATATGTAATGAAAGCATGTGATAACAAATTACATATATGTTGCAAATTTATACATTTGTTTATATTCTTTTGCTACTCTTTTTCACAGGCTTGTTGTACTTTGCTGGTTGTTGACAGTATTATGCTGGCTATTCTTTGGAGTCTATTTCTTCTTAGAAAAGTAATTCAAAAGTCCTTTCTTATTACCATAATTACATAGTAATATTTTTATAAAGTAGAGGCTTGTGTCTAACAGTTGAAATCTCTATATATTGTAGATTTTCTAGTGATGCTTGCACAGCTCTTGACAACTTTCAAGAAAATCCTTATAACAACAGCTTAAGCTCAATCCTTCCATGTCAAGAATTGCTCAAAGCAAAACCAGTTCTATCTGAATTTAGTGCTGGTATCTATAATCTTGTTAATGAGGTAAATTTTTCATAATCTCTAAAAAAAATCAGCTTATTTTCCAAATGAGTTCTATATTAATGTTCATAAACTATTGTTTTTGGATCCAACATACTGGACCTATTAATTTCATGTTGGAGTAACTTTTTTGGATTTTTGGTTGGTTGTCTAGGTGAATGCAAACATATCAATGCAGACAAACCTTGTTCTTGTTTGCAATCCTTTCTCAGCGCCACCAAATTATACCTACCAACCCGAGAATTGTCCAGATAATACTATACGAATAGGTGACATTCCAAAGGTATACGATAGAAGAGTTGAATATATTTTTTGTCCTTATACAATCCGAGCTGTTTATATAGGACTAAAGTTAAATGGTCATGATTTTATTTTTTCCTAAATTATAAGACCAAGATGAATTAACAATGTGATCATTCTTTTTTAAGGTATTAAAGCCTTTTACTTGTTTGGATACAAATGATGGGAGTTGTGACAATGGAAATTTCATAACAAACAGTGAATATGCAAGAGTTGAAACTTACACAAATTCAATTCAAGACCTATTGAATGTGTATCCAAGTATGGAACATTTGTTAGAATGCCAAATTGTAAAAGATGCATTCTCTCAAGTCCTTGTTGACCATTGCAAGCCTATGAAGAAATATGCTAAGATGGCATGGGTAGGAATGGTGTTCCTTGGAGTGATCATGGTTTTGTTGATTATGTTTTGGACTATAAAGGCTAGTCATGAACATTGTTATCATGGTTCAGATGGTTCTGTGGAGCCTCATTGTGAAGTACCAAATTCCTTCAAATCAAGAGCAGTTAAAGAGATTGAGATTTGA
Protein sequence

>MS.gene98737.t1

MRSTMFMFDSDNVSEQITQRDNTIRVDPLDNFKKYRGGFDITNKNYWSSLIFTGVYGYAIGMLCLLCGILYGVILLITKVYHHKNGGKRMKKVFPCNYKSCDALLIPLAIFLMLIAIVATGLVLVGSARFHSEAKTSVDIIIKTANKASETIHNTTEALKGMESNLMEANVNVEASSNLDSTAEKLDDASVNIEMQAQKNRRLISKGLKIVFITTTVIMCLNLLAVTILSVSGVLRLRRALYLLVVLCWLLTVLCWLFFGVYFFLEKFSSDACTALDNFQENPYNNSLSSILPCQELLKAKPVLSEFSAGIYNLVNEVNANISMQTNLVLVCNPFSAPPNYTYQPENCPDNTIRIGDIPKVLKPFTCLDTNDGSCDNGNFITNSEYARVETYTNSIQDLLNVYPSMEHLLECQIVKDAFSQVLVDHCKPMKKYAKMAWVGMVFLGVIMVLLIMFWTIKASHEHCYHGSDGSVEPHCEVPNSFKSRAVKEIEI