AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene051998

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051998.t1 MTR_2g099140 95.340 515 24 0 1 515 1 515 0.0 1018
MS.gene051998.t1 MTR_2g099140 92.817 529 24 1 1 515 1 529 0.0 1009
MS.gene051998.t1 MTR_5g015390 32.237 456 247 9 48 481 43 458 7.84e-72 236
MS.gene051998.t1 MTR_1g108460 27.273 495 305 15 20 484 53 522 2.39e-40 153
MS.gene051998.t1 MTR_2g450550 22.822 482 329 12 30 486 54 517 1.35e-37 145
MS.gene051998.t1 MTR_3g106510 23.391 466 307 11 44 480 67 511 8.52e-37 144
MS.gene051998.t1 MTR_4g116290 23.077 468 319 8 40 486 41 488 4.15e-35 137
MS.gene051998.t1 MTR_2g450550 22.376 362 249 8 149 486 59 412 4.42e-30 122
MS.gene051998.t1 MTR_1g108460 27.451 408 229 16 20 392 53 428 6.09e-28 116
MS.gene051998.t1 MTR_2g450550 23.352 364 238 11 30 368 54 401 6.88e-25 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051998.t1 AT5G67550 26.667 510 337 9 6 497 8 498 4.15e-64 217
MS.gene051998.t1 AT2G12400 25.101 494 326 10 37 504 63 538 2.06e-42 159
MS.gene051998.t1 AT2G25270 25.319 470 293 15 44 480 75 519 5.02e-42 158
MS.gene051998.t1 AT1G71110 23.307 502 334 13 25 498 51 529 4.73e-36 141
MS.gene051998.t1 AT1G80540 20.165 486 344 11 28 480 43 517 3.97e-23 103
MS.gene051998.t1 AT1G80540 19.958 471 343 10 33 480 12 471 5.84e-23 102
MS.gene051998.t1 AT1G80540 19.284 363 265 8 141 480 7 364 1.50e-15 79.0

Find 81 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATCACCAACAAGAATTAT+TGG 0.207437 2.2:+3724506 MS.gene051998:CDS
TTGATATTCACTGGAGTATA+TGG 0.251671 2.2:+3724615 MS.gene051998:CDS
TCGGGTTGGTAGGTATAATT+TGG 0.268119 2.2:-3726357 None:intergenic
GAGCTTAAGCTGTTGTTATA+AGG 0.299992 2.2:-3726039 None:intergenic
ACAGGCTTGTTGTACTTTGC+TGG 0.301195 2.2:+3725820 MS.gene051998:intron
GTATTATGCTGGCTATTCTT+TGG 0.304357 2.2:+3725852 MS.gene051998:CDS
GGCTATTAACATGAGAAATA+TGG 0.305507 2.2:-3724793 None:intergenic
TTTAACTGCTCTTGATTTGA+AGG 0.331948 2.2:-3726907 None:intergenic
TTTGTATCCAAACAAGTAAA+AGG 0.335128 2.2:-3726555 None:intergenic
AACACAACAGAAGCATTAAA+AGG 0.338281 2.2:+3725053 MS.gene051998:CDS
TGATGCTTTACTAATTCCTT+TGG 0.344919 2.2:+3724770 MS.gene051998:CDS
ATTGAATGTGTATCCAAGTA+TGG 0.345176 2.2:+3726662 MS.gene051998:CDS
GCTCTTGATTTGAAGGAATT+CGG 0.358857 2.2:-3726900 None:intergenic
AATAGGCGCCTTATCAATAA+TGG 0.359386 2.2:+3725191 MS.gene051998:CDS
ATCTTAGCATATTTCTTCAT+AGG 0.370043 2.2:-3726750 None:intergenic
TACACTCCAATAATTCTTGT+TGG 0.372190 2.2:-3724512 None:intergenic
CCTATTCGTATAGTATTATC+TGG 0.379970 2.2:-3726387 None:intergenic
GCAACAGGGCTAGTTCTTGT+AGG 0.391851 2.2:+3724948 MS.gene051998:CDS
CAGCTTGTGCTTCAATTTGT+GGG 0.405144 2.2:-3723447 None:intergenic
AGTATTATCTGGACAATTCT+CGG 0.408061 2.2:-3726376 None:intergenic
CATACAAAATTCCACATAGA+AGG 0.413531 2.2:-3724659 None:intergenic
AGTCATGAACATTGTTATCA+TGG 0.416314 2.2:+3726843 MS.gene051998:CDS
GGAGTATATGGATATGCAAT+TGG 0.424393 2.2:+3724627 MS.gene051998:CDS
TTGTAGTCTTTGATATTCAC+TGG 0.425080 2.2:+3724606 MS.gene051998:intron
TCTAACAAATGTTCCATACT+TGG 0.426331 2.2:-3726675 None:intergenic
CCAGATAATACTATACGAAT+AGG 0.430631 2.2:+3726387 MS.gene051998:CDS
ACTTGTTTGGATACAAATGA+TGG 0.450904 2.2:+3726561 MS.gene051998:CDS
CATTGTTATCATGGTTCAGA+TGG 0.453877 2.2:+3726852 MS.gene051998:CDS
TGGGTAGGAATGGTGTTCCT+TGG 0.455580 2.2:+3726777 MS.gene051998:CDS
TATAATAGATACCAAGCCTT+TGG 0.456475 2.2:-3723404 None:intergenic
GATTTGTGTAGAGTTGCAAC+AGG 0.456871 2.2:+3724933 MS.gene051998:intron
TTTCTGGTGTACTACGGTTA+AGG 0.464706 2.2:+3725680 MS.gene051998:CDS
GGTGTTCCTTGGAGTGATCA+TGG 0.465850 2.2:+3726788 MS.gene051998:CDS
ACAGCTTGTGCTTCAATTTG+TGG 0.469456 2.2:-3723448 None:intergenic
GCACTAAATTCAGATAGAAC+TGG 0.472426 2.2:-3726096 None:intergenic
TATGAAGAAATATGCTAAGA+TGG 0.477004 2.2:+3726752 MS.gene051998:CDS
TCACCTGGTGATTCTGCTGC+AGG 0.478707 2.2:+3723472 MS.gene051998:CDS
TAATTTGGTGGCGCTGAGAA+AGG 0.479612 2.2:-3726342 None:intergenic
GTATTATCTGGACAATTCTC+GGG 0.490684 2.2:-3726375 None:intergenic
AGGCATGGAGAGTAACTTGA+TGG 0.496619 2.2:+3725073 MS.gene051998:CDS
GTTCTATCTGAATTTAGTGC+TGG 0.497245 2.2:+3726099 MS.gene051998:CDS
CAACAGGGCTAGTTCTTGTA+GGG 0.506049 2.2:+3724949 MS.gene051998:CDS
GGTTGTTGACAGTATTATGC+TGG 0.511614 2.2:+3725841 MS.gene051998:CDS
TGAGCAATTCTTGACATGGA+AGG 0.514152 2.2:-3726065 None:intergenic
TATCTATAATCTTGTTAATG+AGG 0.517870 2.2:+3726122 MS.gene051998:CDS
TACTTGGATACACATTCAAT+AGG 0.517880 2.2:-3726659 None:intergenic
AGAAATATGCTAAGATGGCA+TGG 0.519247 2.2:+3726757 MS.gene051998:CDS
GGTTGGTAGGTATAATTTGG+TGG 0.528341 2.2:-3726354 None:intergenic
GTCAGAACAGATTACACAAA+GGG 0.530197 2.2:+3724426 MS.gene051998:CDS
CATAATCAAAACAGCAAACA+AGG 0.542949 2.2:+3725013 MS.gene051998:CDS
AGAAGCCTCAACATTAACAT+TGG 0.547079 2.2:-3725099 None:intergenic
GAAGCACAAGCTGTCTCACC+TGG 0.551867 2.2:+3723457 MS.gene051998:CDS
CTTGTTTGGATACAAATGAT+GGG 0.553416 2.2:+3726562 MS.gene051998:CDS
ATTTCTTCATAGGCTTGCAA+TGG 0.560254 2.2:-3726740 None:intergenic
AACAGAAGCATTAAAAGGCA+TGG 0.560327 2.2:+3725058 MS.gene051998:CDS
TTAAAGATGTTCATAGCCAA+AGG 0.561779 2.2:+3723388 None:intergenic
GAACAGTTTCTGGTGTACTA+CGG 0.561972 2.2:+3725674 MS.gene051998:intron
GATGTTCATAGCCAAAGGCT+TGG 0.569407 2.2:+3723393 None:intergenic
TATCTGGACAATTCTCGGGT+TGG 0.582340 2.2:-3726371 None:intergenic
CTGGTGTACTACGGTTAAGG+AGG 0.583051 2.2:+3725683 MS.gene051998:CDS
TGGACAATTCTCGGGTTGGT+AGG 0.583599 2.2:-3726367 None:intergenic
TCACAACTCTTGTAATTACA+AGG 0.584647 2.2:-3724750 None:intergenic
TCATGGTTCAGATGGTTCTG+TGG 0.587485 2.2:+3726860 MS.gene051998:CDS
AAGGGATAATACAATTAGAG+TGG 0.592143 2.2:+3724444 MS.gene051998:CDS
GAAATATGCTAAGATGGCAT+GGG 0.595556 2.2:+3726758 MS.gene051998:CDS
AACATGAGAAATATGGCCAA+AGG 0.602955 2.2:-3724786 None:intergenic
GCTTTGAGCAATTCTTGACA+TGG 0.606847 2.2:-3726069 None:intergenic
TGGTGTACTACGGTTAAGGA+GGG 0.631651 2.2:+3725684 MS.gene051998:CDS
TATGCTAAGATGGCATGGGT+AGG 0.632516 2.2:+3726762 MS.gene051998:CDS
AAGGATTGCAAACAAGAACA+AGG 0.637380 2.2:-3726323 None:intergenic
AATGATGGGAGTTGTGACAA+TGG 0.638209 2.2:+3726576 MS.gene051998:CDS
ACAAAACCATGATCACTCCA+AGG 0.642179 2.2:-3726794 None:intergenic
TAGGCTTGCAATGGTCAACA+AGG 0.643609 2.2:-3726731 None:intergenic
TAAGATGGCATGGGTAGGAA+TGG 0.645876 2.2:+3726767 MS.gene051998:CDS
GGAATGTTATGCCTTCTATG+TGG 0.645924 2.2:+3724648 MS.gene051998:CDS
GGAAGCCAATGTTAATGTTG+AGG 0.652341 2.2:+3725094 MS.gene051998:CDS
ACGAATAGGTGACATTCCAA+AGG 0.664454 2.2:+3726401 MS.gene051998:CDS
TTACCTGCAGCAGAATCACC+AGG 0.670804 2.2:-3723475 None:intergenic
ATTTGTGTAGAGTTGCAACA+GGG 0.687136 2.2:+3724934 MS.gene051998:intron
TGTCAGAACAGATTACACAA+AGG 0.693803 2.2:+3724425 MS.gene051998:CDS
GAATTCGGTACTTCACAATG+AGG 0.698419 2.2:-3726885 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATTACTATGTAATTA+TGG - chr2.2:3725924-3725943 None:intergenic 10.0%
!!! TTGATATTTTTATATTTGTT+TGG - chr2.2:3724270-3724289 None:intergenic 10.0%
!!! CATTTTTATGATATTTGATA+GGG - chr2.2:3723840-3723859 None:intergenic 15.0%
!!! GCTTTAAATATTTATTTCAA+AGG + chr2.2:3723912-3723931 MS.gene051998:intron 15.0%
!!! GTAATATTTTTATAAAGTAG+AGG + chr2.2:3725934-3725953 MS.gene051998:intron 15.0%
!!! TACTTTTTGAAATTATCTAA+TGG - chr2.2:3724472-3724491 None:intergenic 15.0%
!! AAAATGAATGAAAAATTGCA+TGG + chr2.2:3725486-3725505 MS.gene051998:intron 20.0%
!! AAATCATAAAAATGGTCAAA+TGG + chr2.2:3723885-3723904 MS.gene051998:intron 20.0%
!! AATCATAAAAATGGTCAAAT+GGG + chr2.2:3723886-3723905 MS.gene051998:intron 20.0%
!! ACATGATATATTTATTAACC+AGG + chr2.2:3723968-3723987 MS.gene051998:intron 20.0%
!! ACATTAATATAGAACTCATT+TGG - chr2.2:3726186-3726205 None:intergenic 20.0%
!! ATTCATGTTGAAATATTACA+TGG + chr2.2:3723600-3723619 MS.gene051998:intron 20.0%
!! CCTATCAAATATCATAAAAA+TGG + chr2.2:3723838-3723857 MS.gene051998:intron 20.0%
!! TATATAGGACTAAAGTTAAA+TGG + chr2.2:3726455-3726474 MS.gene051998:intron 20.0%
!! TATCTATAATCTTGTTAATG+AGG + chr2.2:3726122-3726141 MS.gene051998:CDS 20.0%
!! TGTAATTATGGTAATAAGAA+AGG - chr2.2:3725912-3725931 None:intergenic 20.0%
!! TTTACTATTTAAACAGTAGT+AGG - chr2.2:3725469-3725488 None:intergenic 20.0%
!! TTTCGTCATTAAAATTGTAA+TGG + chr2.2:3725245-3725264 MS.gene051998:intron 20.0%
!!! AATGTGATCATTCTTTTTTA+AGG + chr2.2:3726524-3726543 MS.gene051998:intron 20.0%
!!! ATGTTAGAAATTGTTTTGTT+AGG + chr2.2:3724170-3724189 MS.gene051998:intron 20.0%
!!! CCATTTTTATGATATTTGAT+AGG - chr2.2:3723841-3723860 None:intergenic 20.0%
!!! TCATTTTTTGAAATTGTCTT+TGG + chr2.2:3724357-3724376 MS.gene051998:intron 20.0%
!!! TGTTAGAAATTGTTTTGTTA+GGG + chr2.2:3724171-3724190 MS.gene051998:intron 20.0%
!!! TGTTCATAAACTATTGTTTT+TGG + chr2.2:3726203-3726222 MS.gene051998:intron 20.0%
! AAGGTTTATCATCACAAAAA+TGG + chr2.2:3724702-3724721 MS.gene051998:CDS 25.0%
! AATGGAATAAATTTCATTGC+AGG + chr2.2:3725513-3725532 MS.gene051998:intron 25.0%
! AATTTCAACGACTAAATTGA+CGG + chr2.2:3725395-3725414 MS.gene051998:intron 25.0%
! ACATGATTCTCATATAATGT+TGG + chr2.2:3725641-3725660 MS.gene051998:intron 25.0%
! ATCACATTGTTAATTCATCT+TGG - chr2.2:3726512-3726531 None:intergenic 25.0%
! ATCTTAGCATATTTCTTCAT+AGG - chr2.2:3726753-3726772 None:intergenic 25.0%
! CTCTAATGATTAATCACTAA+AGG - chr2.2:3724846-3724865 None:intergenic 25.0%
! GTCATTAAAATTGTAATGGT+CGG + chr2.2:3725249-3725268 MS.gene051998:intron 25.0%
! TACTCCAACATGAAATTAAT+AGG - chr2.2:3726244-3726263 None:intergenic 25.0%
! TATGAAGAAATATGCTAAGA+TGG + chr2.2:3726752-3726771 MS.gene051998:CDS 25.0%
! TGTATCAATCATTATGTGTA+TGG - chr2.2:3725624-3725643 None:intergenic 25.0%
! TTGAATATAATCACATGTGT+CGG + chr2.2:3723710-3723729 MS.gene051998:intron 25.0%
! TTTAGTCCTTGAAATTGAAA+AGG - chr2.2:3725422-3725441 None:intergenic 25.0%
! TTTGTATCCAAACAAGTAAA+AGG - chr2.2:3726558-3726577 None:intergenic 25.0%
!! AATTTTCATTGAACAGTTTC+TGG + chr2.2:3725664-3725683 MS.gene051998:intron 25.0%
!! AGAATGCATCTTTTACAATT+TGG - chr2.2:3726704-3726723 None:intergenic 25.0%
!! ATTAAAGCCTTTTACTTGTT+TGG + chr2.2:3726548-3726567 MS.gene051998:CDS 25.0%
!! GATAATTTCAAAAAGTACAG+AGG + chr2.2:3724475-3724494 MS.gene051998:CDS 25.0%
!!! CGACACATACAATTTTTTTA+TGG + chr2.2:3724878-3724897 MS.gene051998:intron 25.0%
!!! GAGTAACTTTTTTGGATTTT+TGG + chr2.2:3726259-3726278 MS.gene051998:intron 25.0%
!!! GATTATGTTTTGGACTATAA+AGG + chr2.2:3726818-3726837 MS.gene051998:CDS 25.0%
!!! TCATCTTGGTCTTATAATTT+AGG - chr2.2:3726498-3726517 None:intergenic 25.0%
!!! TGAAATTTTAGCATACTTAC+AGG - chr2.2:3725717-3725736 None:intergenic 25.0%
!!! TGGTTTTGTTGATTATGTTT+TGG + chr2.2:3726808-3726827 MS.gene051998:CDS 25.0%
!!! TTAACATCGTGTTTTGATTT+TGG + chr2.2:3725597-3725616 MS.gene051998:intron 25.0%
!!! TTTTCAAGCCATTATTGATA+AGG - chr2.2:3725202-3725221 None:intergenic 25.0%
AAATGCAAGCTCAGAAAAAT+AGG + chr2.2:3725174-3725193 MS.gene051998:CDS 30.0%
AAGGGATAATACAATTAGAG+TGG + chr2.2:3724444-3724463 MS.gene051998:CDS 30.0%
AATTAATAGGTCCAGTATGT+TGG - chr2.2:3726231-3726250 None:intergenic 30.0%
ACATCACCAACAAGAATTAT+TGG + chr2.2:3724506-3724525 MS.gene051998:CDS 30.0%
ACGTCTTCAATTAGAAATGT+CGG + chr2.2:3723759-3723778 MS.gene051998:intron 30.0%
ACTTGTTTGGATACAAATGA+TGG + chr2.2:3726561-3726580 MS.gene051998:CDS 30.0%
AGTATTATCTGGACAATTCT+CGG - chr2.2:3726379-3726398 None:intergenic 30.0%
AGTCATGAACATTGTTATCA+TGG + chr2.2:3726843-3726862 MS.gene051998:CDS 30.0%
ATTGAATGTGTATCCAAGTA+TGG + chr2.2:3726662-3726681 MS.gene051998:CDS 30.0%
ATTTATTAACCAGGAAGAGT+AGG + chr2.2:3723977-3723996 MS.gene051998:intron 30.0%
CATAATCAAAACAGCAAACA+AGG + chr2.2:3725013-3725032 MS.gene051998:CDS 30.0%
CATACAAAATTCCACATAGA+AGG - chr2.2:3724662-3724681 None:intergenic 30.0%
CCAGATAATACTATACGAAT+AGG + chr2.2:3726387-3726406 MS.gene051998:CDS 30.0%
CCTATTCGTATAGTATTATC+TGG - chr2.2:3726390-3726409 None:intergenic 30.0%
CTTGTTTGGATACAAATGAT+GGG + chr2.2:3726562-3726581 MS.gene051998:CDS 30.0%
GAAAAATTGCATGGAAGTAA+TGG + chr2.2:3725495-3725514 MS.gene051998:intron 30.0%
GAAGTTAGACTCAAAAAAGA+GGG - chr2.2:3724549-3724568 None:intergenic 30.0%
GGCTATTAACATGAGAAATA+TGG - chr2.2:3724796-3724815 None:intergenic 30.0%
GTAGATTGCAGAAAATTTGA+AGG - chr2.2:3723551-3723570 None:intergenic 30.0%
GTATGTTAGTAGCTAAACTT+GGG - chr2.2:3724150-3724169 None:intergenic 30.0%
GTTTATCATCACAAAAATGG+AGG + chr2.2:3724705-3724724 MS.gene051998:CDS 30.0%
GTTTCTCAAACTTGTGAAAT+TGG + chr2.2:3725280-3725299 MS.gene051998:intron 30.0%
TACACTCCAATAATTCTTGT+TGG - chr2.2:3724515-3724534 None:intergenic 30.0%
TACTTGGATACACATTCAAT+AGG - chr2.2:3726662-3726681 None:intergenic 30.0%
TATAATAGATACCAAGCCTT+TGG - chr2.2:3723407-3723426 None:intergenic 30.0%
TCACAACTCTTGTAATTACA+AGG - chr2.2:3724753-3724772 None:intergenic 30.0%
TCTAACAAATGTTCCATACT+TGG - chr2.2:3726678-3726697 None:intergenic 30.0%
TGAAGTTAGACTCAAAAAAG+AGG - chr2.2:3724550-3724569 None:intergenic 30.0%
TGATGCTTTACTAATTCCTT+TGG + chr2.2:3724770-3724789 MS.gene051998:CDS 30.0%
TGGACCTATTAATTTCATGT+TGG + chr2.2:3726237-3726256 MS.gene051998:intron 30.0%
TGTATGTTAGTAGCTAAACT+TGG - chr2.2:3724151-3724170 None:intergenic 30.0%
TTAGTCCTATATAAACAGCT+CGG - chr2.2:3726448-3726467 None:intergenic 30.0%
TTGATATTCACTGGAGTATA+TGG + chr2.2:3724615-3724634 MS.gene051998:CDS 30.0%
TTGTAGTCTTTGATATTCAC+TGG + chr2.2:3724606-3724625 MS.gene051998:intron 30.0%
TTTATTAACCAGGAAGAGTA+GGG + chr2.2:3723978-3723997 MS.gene051998:intron 30.0%
! AAATTTTGCACCACGATTTA+AGG - chr2.2:3725315-3725334 None:intergenic 30.0%
! AATTTCAAAAAGTACAGAGG+AGG + chr2.2:3724478-3724497 MS.gene051998:CDS 30.0%
! AATTTTGCACCACGATTTAA+GGG - chr2.2:3725314-3725333 None:intergenic 30.0%
! CTTCTATGTGGAATTTTGTA+TGG + chr2.2:3724660-3724679 MS.gene051998:CDS 30.0%
! TTTAACTGCTCTTGATTTGA+AGG - chr2.2:3726910-3726929 None:intergenic 30.0%
!! AACACAACAGAAGCATTAAA+AGG + chr2.2:3725053-3725072 MS.gene051998:CDS 30.0%
!! AGTTATTTTGCTGATCACAA+AGG + chr2.2:3724683-3724702 MS.gene051998:CDS 30.0%
!! TAATTTGTTATGCTTTAGCC+AGG - chr2.2:3724014-3724033 None:intergenic 30.0%
!!! GAGAGACAATCTTTTTTTCA+TGG - chr2.2:3724096-3724115 None:intergenic 30.0%
!!! GGATTTTTGGTTATTTGTCT+AGG + chr2.2:3726272-3726291 MS.gene051998:intron 30.0%
!!! TCATGTTGGAGTAACTTTTT+TGG + chr2.2:3726251-3726270 MS.gene051998:intron 30.0%
AACATGAGAAATATGGCCAA+AGG - chr2.2:3724789-3724808 None:intergenic 35.0%
AAGGATTGCAAACAAGAACA+AGG - chr2.2:3726326-3726345 None:intergenic 35.0%
AATAGGCGCCTTATCAATAA+TGG + chr2.2:3725191-3725210 MS.gene051998:CDS 35.0%
ACAATCCGAGCTGTTTATAT+AGG + chr2.2:3726440-3726459 MS.gene051998:intron 35.0%
AGAAATATGCTAAGATGGCA+TGG + chr2.2:3726757-3726776 MS.gene051998:CDS 35.0%
AGAAGCCTCAACATTAACAT+TGG - chr2.2:3725102-3725121 None:intergenic 35.0%
ATAAACAGCTCGGATTGTAT+AGG - chr2.2:3726438-3726457 None:intergenic 35.0%
ATAGGGACAAAAACTACCTT+TGG - chr2.2:3726420-3726439 None:intergenic 35.0%
ATTTCTTCATAGGCTTGCAA+TGG - chr2.2:3726743-3726762 None:intergenic 35.0%
ATTTGTGTAGAGTTGCAACA+GGG + chr2.2:3724934-3724953 MS.gene051998:intron 35.0%
CATTGTTATCATGGTTCAGA+TGG + chr2.2:3726852-3726871 MS.gene051998:CDS 35.0%
GAAATATGCTAAGATGGCAT+GGG + chr2.2:3726758-3726777 MS.gene051998:CDS 35.0%
GAATTTAGTCCCTTAAATCG+TGG + chr2.2:3725302-3725321 MS.gene051998:intron 35.0%
GAGCTTAAGCTGTTGTTATA+AGG - chr2.2:3726042-3726061 None:intergenic 35.0%
GATTAATCACTAAAGGCTAG+AGG - chr2.2:3724839-3724858 None:intergenic 35.0%
GCACTAAATTCAGATAGAAC+TGG - chr2.2:3726099-3726118 None:intergenic 35.0%
GGAGTATATGGATATGCAAT+TGG + chr2.2:3724627-3724646 MS.gene051998:CDS 35.0%
GTATTATCTGGACAATTCTC+GGG - chr2.2:3726378-3726397 None:intergenic 35.0%
GTCAGAACAGATTACACAAA+GGG + chr2.2:3724426-3724445 MS.gene051998:CDS 35.0%
GTCGTTGAAATTTGCGAAAT+AGG - chr2.2:3725387-3725406 None:intergenic 35.0%
GTTCTATCTGAATTTAGTGC+TGG + chr2.2:3726099-3726118 MS.gene051998:CDS 35.0%
TAAACAGCTCGGATTGTATA+GGG - chr2.2:3726437-3726456 None:intergenic 35.0%
TCATGCATATACATCACTTG+AGG - chr2.2:3724908-3724927 None:intergenic 35.0%
TGTCAGAACAGATTACACAA+AGG + chr2.2:3724425-3724444 MS.gene051998:CDS 35.0%
TTGTACTTGTAGAGACTATG+AGG - chr2.2:3723512-3723531 None:intergenic 35.0%
TTTCACTCATTATGAGAGAG+AGG - chr2.2:3724203-3724222 None:intergenic 35.0%
! GCTCTTGATTTGAAGGAATT+CGG - chr2.2:3726903-3726922 None:intergenic 35.0%
! GTATTATGCTGGCTATTCTT+TGG + chr2.2:3725852-3725871 MS.gene051998:CDS 35.0%
!! AACAGAAGCATTAAAAGGCA+TGG + chr2.2:3725058-3725077 MS.gene051998:CDS 35.0%
!! CTTGCTGTAACAATTTTGTC+AGG + chr2.2:3725572-3725591 MS.gene051998:CDS 35.0%
!! CTTTTGCTACTCTTTTTCAC+AGG + chr2.2:3725802-3725821 MS.gene051998:intron 35.0%
!!! CTGAAGTTTTAGCTTCTGAA+TGG - chr2.2:3724986-3725005 None:intergenic 35.0%
!!! TGTTTTTGGATCCAACATAC+TGG + chr2.2:3726217-3726236 MS.gene051998:intron 35.0%
ACAAAACCATGATCACTCCA+AGG - chr2.2:3726797-3726816 None:intergenic 40.0%
ACAGCTTGTGCTTCAATTTG+TGG - chr2.2:3723451-3723470 None:intergenic 40.0%
ACGAATAGGTGACATTCCAA+AGG + chr2.2:3726401-3726420 MS.gene051998:CDS 40.0%
ACTCTGATAGACACATACAC+CGG + chr2.2:3723634-3723653 MS.gene051998:intron 40.0%
CAGCTTGTGCTTCAATTTGT+GGG - chr2.2:3723450-3723469 None:intergenic 40.0%
GAATTCGGTACTTCACAATG+AGG - chr2.2:3726888-3726907 None:intergenic 40.0%
GATTTGTGTAGAGTTGCAAC+AGG + chr2.2:3724933-3724952 MS.gene051998:intron 40.0%
GCAAGGTTGAATGACTTACA+TGG - chr2.2:3724817-3724836 None:intergenic 40.0%
GGAAGCCAATGTTAATGTTG+AGG + chr2.2:3725094-3725113 MS.gene051998:CDS 40.0%
GGAATGTTATGCCTTCTATG+TGG + chr2.2:3724648-3724667 MS.gene051998:CDS 40.0%
GGCAACACACATTATCATGT+CGG + chr2.2:3723668-3723687 MS.gene051998:intron 40.0%
GGTTGTTGACAGTATTATGC+TGG + chr2.2:3725841-3725860 MS.gene051998:CDS 40.0%
GTTAGTAGCTAAACTTGGGT+AGG - chr2.2:3724146-3724165 None:intergenic 40.0%
TGAGCAATTCTTGACATGGA+AGG - chr2.2:3726068-3726087 None:intergenic 40.0%
! AATGATGGGAGTTGTGACAA+TGG + chr2.2:3726576-3726595 MS.gene051998:CDS 40.0%
! GACGGACCTTTTCAATTTCA+AGG + chr2.2:3725413-3725432 MS.gene051998:intron 40.0%
! GCTTTGAGCAATTCTTGACA+TGG - chr2.2:3726072-3726091 None:intergenic 40.0%
! TTTCTGGTGTACTACGGTTA+AGG + chr2.2:3725680-3725699 MS.gene051998:CDS 40.0%
!! GAACAGTTTCTGGTGTACTA+CGG + chr2.2:3725674-3725693 MS.gene051998:intron 40.0%
!! GGTTGGTAGGTATAATTTGG+TGG - chr2.2:3726357-3726376 None:intergenic 40.0%
!! TCGGGTTGGTAGGTATAATT+TGG - chr2.2:3726360-3726379 None:intergenic 40.0%
AGGCATGGAGAGTAACTTGA+TGG + chr2.2:3725073-3725092 MS.gene051998:CDS 45.0%
ATCACTAAAGGCTAGAGGCA+AGG - chr2.2:3724834-3724853 None:intergenic 45.0%
CATACACCGGACACAACATT+TGG + chr2.2:3723647-3723666 MS.gene051998:intron 45.0%
GGAGAGACAGTAGAGCAAAT+AGG - chr2.2:3725448-3725467 None:intergenic 45.0%
GTGTTGCCAAATGTTGTGTC+CGG - chr2.2:3723656-3723675 None:intergenic 45.0%
TAAGATGGCATGGGTAGGAA+TGG + chr2.2:3726767-3726786 MS.gene051998:CDS 45.0%
TAGGCTTGCAATGGTCAACA+AGG - chr2.2:3726734-3726753 None:intergenic 45.0%
TATCTGGACAATTCTCGGGT+TGG - chr2.2:3726374-3726393 None:intergenic 45.0%
TATGCTAAGATGGCATGGGT+AGG + chr2.2:3726762-3726781 MS.gene051998:CDS 45.0%
TGGTGTACTACGGTTAAGGA+GGG + chr2.2:3725684-3725703 MS.gene051998:CDS 45.0%
! TCATGGTTCAGATGGTTCTG+TGG + chr2.2:3726860-3726879 MS.gene051998:CDS 45.0%
!! ACAGGCTTGTTGTACTTTGC+TGG + chr2.2:3725820-3725839 MS.gene051998:intron 45.0%
!! CAACAGGGCTAGTTCTTGTA+GGG + chr2.2:3724949-3724968 MS.gene051998:CDS 45.0%
!! TAATTTGGTGGCGCTGAGAA+AGG - chr2.2:3726345-3726364 None:intergenic 45.0%
!! AAAAAATAAAATCATAAAAA+TGG + chr2.2:3723877-3723896 MS.gene051998:intron 5.0%
AACCAGGAAGAGTAGGGCTA+AGG + chr2.2:3723984-3724003 MS.gene051998:intron 50.0%
CTGGTGTACTACGGTTAAGG+AGG + chr2.2:3725683-3725702 MS.gene051998:CDS 50.0%
GAGTAGGGCTAAGGAATTCC+TGG + chr2.2:3723993-3724012 MS.gene051998:intron 50.0%
GGTGTTCCTTGGAGTGATCA+TGG + chr2.2:3726788-3726807 MS.gene051998:CDS 50.0%
TGGGTAGGAATGGTGTTCCT+TGG + chr2.2:3726777-3726796 MS.gene051998:CDS 50.0%
TTACCTGCAGCAGAATCACC+AGG - chr2.2:3723478-3723497 None:intergenic 50.0%
TTCCTTAGCCCTACTCTTCC+TGG - chr2.2:3723989-3724008 None:intergenic 50.0%
!! GCAACAGGGCTAGTTCTTGT+AGG + chr2.2:3724948-3724967 MS.gene051998:CDS 50.0%
!! TGGACAATTCTCGGGTTGGT+AGG - chr2.2:3726370-3726389 None:intergenic 50.0%
GAAGCACAAGCTGTCTCACC+TGG + chr2.2:3723457-3723476 MS.gene051998:CDS 55.0%
TCACCTGGTGATTCTGCTGC+AGG + chr2.2:3723472-3723491 MS.gene051998:CDS 55.0%
!! CACATGTGTCGGTGTCACGT+CGG + chr2.2:3723721-3723740 MS.gene051998:intron 55.0%
!! TGTCGGTGTCACGTCGGAGT+CGG + chr2.2:3723727-3723746 MS.gene051998:intron 60.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 3723394 3726944 3723394 ID=MS.gene051998
chr2.2 mRNA 3723394 3726944 3723394 ID=MS.gene051998.t1;Parent=MS.gene051998
chr2.2 exon 3723394 3723493 3723394 ID=MS.gene051998.t1.exon1;Parent=MS.gene051998.t1
chr2.2 CDS 3723394 3723493 3723394 ID=cds.MS.gene051998.t1;Parent=MS.gene051998.t1
chr2.2 exon 3724419 3724531 3724419 ID=MS.gene051998.t1.exon2;Parent=MS.gene051998.t1
chr2.2 CDS 3724419 3724531 3724419 ID=cds.MS.gene051998.t1;Parent=MS.gene051998.t1
chr2.2 exon 3724612 3724817 3724612 ID=MS.gene051998.t1.exon3;Parent=MS.gene051998.t1
chr2.2 CDS 3724612 3724817 3724612 ID=cds.MS.gene051998.t1;Parent=MS.gene051998.t1
chr2.2 exon 3724944 3725225 3724944 ID=MS.gene051998.t1.exon4;Parent=MS.gene051998.t1
chr2.2 CDS 3724944 3725225 3724944 ID=cds.MS.gene051998.t1;Parent=MS.gene051998.t1
chr2.2 exon 3725535 3725593 3725535 ID=MS.gene051998.t1.exon5;Parent=MS.gene051998.t1
chr2.2 CDS 3725535 3725593 3725535 ID=cds.MS.gene051998.t1;Parent=MS.gene051998.t1
chr2.2 exon 3725680 3725716 3725680 ID=MS.gene051998.t1.exon6;Parent=MS.gene051998.t1
chr2.2 CDS 3725680 3725716 3725680 ID=cds.MS.gene051998.t1;Parent=MS.gene051998.t1
chr2.2 exon 3725824 3725895 3725824 ID=MS.gene051998.t1.exon7;Parent=MS.gene051998.t1
chr2.2 CDS 3725824 3725895 3725824 ID=cds.MS.gene051998.t1;Parent=MS.gene051998.t1
chr2.2 exon 3725993 3726143 3725993 ID=MS.gene051998.t1.exon8;Parent=MS.gene051998.t1
chr2.2 CDS 3725993 3726143 3725993 ID=cds.MS.gene051998.t1;Parent=MS.gene051998.t1
chr2.2 exon 3726294 3726422 3726294 ID=MS.gene051998.t1.exon9;Parent=MS.gene051998.t1
chr2.2 CDS 3726294 3726422 3726294 ID=cds.MS.gene051998.t1;Parent=MS.gene051998.t1
chr2.2 exon 3726546 3726944 3726546 ID=MS.gene051998.t1.exon10;Parent=MS.gene051998.t1
chr2.2 CDS 3726546 3726944 3726546 ID=cds.MS.gene051998.t1;Parent=MS.gene051998.t1
Gene Sequence

>MS.gene051998

ATGTTCATAGCCAAAGGCTTGGTATCTATTATAGTGATTATAACATTGATTCTCCCACAAATTGAAGCACAAGCTGTCTCACCTGGTGATTCTGCTGCAGGTAATTATTTAGTTTCCTCATAGTCTCTACAAGTACAATCTCAATTATCACATTCCTTCAAATTTTCTGCAATCTACATGCATTTATACAAGTTTATAAATTAAATATTCATGTTGAAATATTACATGGCATGCTATGAAACTCTGATAGACACATACACCGGACACAACATTTGGCAACACACATTATCATGTCGGTGTAATTTGAGAAAATAAATTGAATATAATCACATGTGTCGGTGTCACGTCGGAGTCGGATATCAGACACGTCTTCAATTAGAAATGTCGGTATTACAAAAGTGACATATATGAATCTGTTATTTATGTGAACTAAAAAACAGTTTCCCTATCAAATATCATAAAAATGGTTTCATTATTAGCAAAAAAAAATAAAATCATAAAAATGGTCAAATGGGTAAGCTTTAAATATTTATTTCAAAGGATAGAACAATTGAAACTTACTAATGTGTATGTGACATGATATATTTATTAACCAGGAAGAGTAGGGCTAAGGAATTCCTGGCTAAAGCATAACAAATTAATGAATTTAATTTTGTGTATGATGATCAAAAGTGAAGATGTCTAAAAGATTTTATTTGACCATGAAAAAAAGATTGTCTCTCATGCACAATATGATTCTGAATTATGTACCTACCCAAGTTTAGCTACTAACATACATGTTAGAAATTGTTTTGTTAGGGATGTATCCTCTCTCTCATAATGAGTGAAAATTTCAATTTTATATGTATCTTTAATACATTAAATATATAGAATCCAAACAAATATAAAAATATCAATAGACACAAATACTTCACATGATATAATATTCAAAGTTCAACATGAGATTTTCATTCTTTCATTGTTTCATTTTTTGAAATTGTCTTTGGTACTGAAAATGAGAAGTACTATGTTTATGTTTGATTCAGATAATGTGTCAGAACAGATTACACAAAGGGATAATACAATTAGAGTGGATCCATTAGATAATTTCAAAAAGTACAGAGGAGGATTTGACATCACCAACAAGAATTATTGGAGTGTAAATTTCTATCTCCCTCTTTTTTGAGTCTAACTTCAAACATCAATGATATTGTTAACATTTCATTAATGTTTTTGTAGTCTTTGATATTCACTGGAGTATATGGATATGCAATTGGAATGTTATGCCTTCTATGTGGAATTTTGTATGGAGTTATTTTGCTGATCACAAAGGTTTATCATCACAAAAATGGAGGAAAAAGAATGAAGAAAGTGTTTCCTTGTAATTACAAGAGTTGTGATGCTTTACTAATTCCTTTGGCCATATTTCTCATGTTAATAGCCATGTAAGTCATTCAACCTTGCCTCTAGCCTTTAGTGATTAATCATTAGAGATTACGTAAAATCGACACATACAATTTTTTTATGGTTTTCCTCAAGTGATGTATATGCATGATTGTTGATTTGTGTAGAGTTGCAACAGGGCTAGTTCTTGTAGGGAGTGCAAGATTCCATTCAGAAGCTAAAACTTCAGTTGATATCATAATCAAAACAGCAAACAAGGCATCAGAAACAATACACAACACAACAGAAGCATTAAAAGGCATGGAGAGTAACTTGATGGAAGCCAATGTTAATGTTGAGGCTTCTTCAAATCTTGACTCTACAGCTGAAAAACTTGATGATGCATCTGTAAATATTGAAATGCAAGCTCAGAAAAATAGGCGCCTTATCAATAATGGCTTGAAAATAGTGTAAGAGTCACTAACTCATTTTCGTCATTAAAATTGTAATGGTCGGTCAATTCAGTTTCTCAAACTTGTGAAATTGGAATTTAGTCCCTTAAATCGTGGTGCAAAATTTGAAAAAATGAGTAAATTGTTTGACATTTTTAAATTTAAGAGACTGAATTCCTATTTCGCAAATTTCAACGACTAAATTGACGGACCTTTTCAATTTCAAGGACTAAAACGCCTATTTGCTCTACTGTCTCTCCTACTACTGTTTAAATAGTAAAATGAATGAAAAATTGCATGGAAGTAATGGAATAAATTTCATTGCAGGTTTATAACTACTACAGTGATCATGTGCTTGAACTTGCTTGCTGTAACAATTTTGTCAGGTATTAACATCGTGTTTTGATTTTGGACCATACACATAATGATTGATACATGATTCTCATATAATGTTGGAATTTTCATTGAACAGTTTCTGGTGTACTACGGTTAAGGAGGGCATTGTACCTGTAAGTATGCTAAAATTTCATATGTAATGAAAGCATGTGATAACAAATTACATATATGTTGCAAATTTATACATTTGTTTATATTCTTTTGCTACTCTTTTTCACAGGCTTGTTGTACTTTGCTGGTTGTTGACAGTATTATGCTGGCTATTCTTTGGAGTCTATTTCTTCTTAGAAAAGTAATTCAAAAGTCCTTTCTTATTACCATAATTACATAGTAATATTTTTATAAAGTAGAGGCTTGTGTCTAACAGTTGAAATCTCTATATATTGTAGATTTTCTAGTGATGCTTGCACAGCTCTTGACAACTTTCAAGAAAATCCTTATAACAACAGCTTAAGCTCAATCCTTCCATGTCAAGAATTGCTCAAAGCAAAACCAGTTCTATCTGAATTTAGTGCTGGTATCTATAATCTTGTTAATGAGGTAATTTTTCATAATCTCTAAAAAAAATCAGCTTATTTTCCAAATGAGTTCTATATTAATGTTCATAAACTATTGTTTTTGGATCCAACATACTGGACCTATTAATTTCATGTTGGAGTAACTTTTTTGGATTTTTGGTTATTTGTCTAGGTGAATGCAAACATATCAATGCAGACAAACCTTGTTCTTGTTTGCAATCCTTTCTCAGCGCCACCAAATTATACCTACCAACCCGAGAATTGTCCAGATAATACTATACGAATAGGTGACATTCCAAAGGTAGTTTTTGTCCCTATACAATCCGAGCTGTTTATATAGGACTAAAGTTAAATGGTCATGATTTTATTTTTTCCTAAATTATAAGACCAAGATGAATTAACAATGTGATCATTCTTTTTTAAGGTATTAAAGCCTTTTACTTGTTTGGATACAAATGATGGGAGTTGTGACAATGGAAATTTCATAACAAACAGTGAATATGCAAGAGTTGAAACTTACACAAATTCAATTCAAGACCTATTGAATGTGTATCCAAGTATGGAACATTTGTTAGAATGCCAAATTGTAAAAGATGCATTCTCTCAAGTCCTTGTTGACCATTGCAAGCCTATGAAGAAATATGCTAAGATGGCATGGGTAGGAATGGTGTTCCTTGGAGTGATCATGGTTTTGTTGATTATGTTTTGGACTATAAAGGCTAGTCATGAACATTGTTATCATGGTTCAGATGGTTCTGTGGAGCCTCATTGTGAAGTACCGAATTCCTTCAAATCAAGAGCAGTTAAAGAGATTGAGATTTGA
Protein sequence

>MS.gene051998.t1

MFIAKGLVSIIVIITLILPQIEAQAVSPGDSAADNVSEQITQRDNTIRVDPLDNFKKYRGGFDITNKNYWSSLIFTGVYGYAIGMLCLLCGILYGVILLITKVYHHKNGGKRMKKVFPCNYKSCDALLIPLAIFLMLIAIVATGLVLVGSARFHSEAKTSVDIIIKTANKASETIHNTTEALKGMESNLMEANVNVEASSNLDSTAEKLDDASVNIEMQAQKNRRLINNGLKIVFITTTVIMCLNLLAVTILSVSGVLRLRRALYLLVVLCWLLTVLCWLFFGVYFFLEKFSSDACTALDNFQENPYNNSLSSILPCQELLKAKPVLSEFSAGIYNLVNEVNANISMQTNLVLVCNPFSAPPNYTYQPENCPDNTIRIGDIPKVLKPFTCLDTNDGSCDNGNFITNSEYARVETYTNSIQDLLNVYPSMEHLLECQIVKDAFSQVLVDHCKPMKKYAKMAWVGMVFLGVIMVLLIMFWTIKASHEHCYHGSDGSVEPHCEVPNSFKSRAVKEIEI