Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98811.t1 | KEH15227.1 | 98 | 249 | 2 | 1 | 1 | 246 | 1 | 249 | 4.00E-132 | 480.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98811.t1 | Q8L4N1 | 66.4 | 214 | 53 | 3 | 13 | 218 | 8 | 210 | 1.1e-72 | 274.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98811.t1 | A0A072TCT6 | 98.0 | 249 | 2 | 1 | 1 | 246 | 1 | 249 | 2.9e-132 | 480.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049599 | MS.gene98811 | 0.831373 | 1.73E-55 | -1.69E-46 |
| MS.gene049758 | MS.gene98811 | -0.806427 | 8.27E-50 | -1.69E-46 |
| MS.gene05119 | MS.gene98811 | 0.839386 | 1.63E-57 | -1.69E-46 |
| MS.gene054930 | MS.gene98811 | -0.807371 | 5.22E-50 | -1.69E-46 |
| MS.gene059894 | MS.gene98811 | -0.807236 | 5.58E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98811.t1 | MTR_1717s0010 | 97.992 | 249 | 2 | 1 | 1 | 246 | 1 | 249 | 0.0 | 497 |
| MS.gene98811.t1 | MTR_1527s0010 | 97.992 | 249 | 2 | 1 | 1 | 246 | 1 | 249 | 0.0 | 497 |
| MS.gene98811.t1 | MTR_2g089350 | 60.094 | 213 | 68 | 3 | 23 | 235 | 6 | 201 | 9.78e-87 | 257 |
| MS.gene98811.t1 | MTR_2g081250 | 44.025 | 159 | 54 | 4 | 23 | 181 | 5 | 128 | 3.31e-34 | 120 |
| MS.gene98811.t1 | MTR_1g087200 | 30.114 | 176 | 97 | 5 | 42 | 214 | 6 | 158 | 7.67e-19 | 80.9 |
| MS.gene98811.t1 | MTR_1g054765 | 27.807 | 187 | 108 | 6 | 41 | 216 | 2 | 172 | 1.11e-18 | 80.9 |
| MS.gene98811.t1 | MTR_1g088640 | 28.814 | 177 | 92 | 5 | 46 | 217 | 16 | 163 | 4.30e-15 | 71.2 |
| MS.gene98811.t1 | MTR_5g065980 | 31.818 | 176 | 92 | 7 | 46 | 212 | 12 | 168 | 7.47e-15 | 70.9 |
| MS.gene98811.t1 | MTR_5g065980 | 31.250 | 176 | 95 | 7 | 46 | 212 | 12 | 170 | 8.61e-15 | 70.5 |
| MS.gene98811.t1 | MTR_4g064933 | 32.955 | 176 | 90 | 7 | 42 | 212 | 5 | 157 | 1.29e-14 | 69.7 |
| MS.gene98811.t1 | MTR_1g088640 | 29.714 | 175 | 96 | 6 | 46 | 217 | 16 | 166 | 1.37e-14 | 69.7 |
| MS.gene98811.t1 | MTR_7g065770 | 28.249 | 177 | 97 | 5 | 42 | 212 | 5 | 157 | 3.30e-14 | 68.9 |
| MS.gene98811.t1 | MTR_5g077130 | 31.765 | 170 | 96 | 6 | 44 | 212 | 7 | 157 | 7.11e-14 | 67.8 |
| MS.gene98811.t1 | MTR_2g034200 | 30.058 | 173 | 99 | 6 | 42 | 212 | 5 | 157 | 9.00e-14 | 67.4 |
| MS.gene98811.t1 | MTR_5g077130 | 31.765 | 170 | 97 | 6 | 44 | 212 | 7 | 158 | 9.85e-14 | 67.4 |
| MS.gene98811.t1 | MTR_1g054750 | 25.414 | 181 | 114 | 5 | 41 | 216 | 21 | 185 | 1.48e-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98811.t1 | AT1G11360 | 61.207 | 232 | 67 | 4 | 1 | 232 | 1 | 209 | 2.10e-95 | 280 |
| MS.gene98811.t1 | AT1G11360 | 61.207 | 232 | 67 | 4 | 1 | 232 | 1 | 209 | 2.10e-95 | 280 |
| MS.gene98811.t1 | AT1G11360 | 61.207 | 232 | 67 | 4 | 1 | 232 | 1 | 209 | 2.10e-95 | 280 |
| MS.gene98811.t1 | AT1G11360 | 61.207 | 232 | 67 | 4 | 1 | 232 | 1 | 209 | 2.10e-95 | 280 |
| MS.gene98811.t1 | AT5G54430 | 67.290 | 214 | 47 | 5 | 39 | 246 | 45 | 241 | 8.19e-82 | 245 |
| MS.gene98811.t1 | AT5G54430 | 67.290 | 214 | 47 | 5 | 39 | 246 | 45 | 241 | 8.19e-82 | 245 |
| MS.gene98811.t1 | AT4G27320 | 68.599 | 207 | 44 | 3 | 31 | 227 | 34 | 229 | 1.25e-81 | 245 |
| MS.gene98811.t1 | AT4G27320 | 68.599 | 207 | 44 | 3 | 31 | 227 | 34 | 229 | 1.28e-81 | 245 |
| MS.gene98811.t1 | AT5G54430 | 67.136 | 213 | 47 | 5 | 39 | 245 | 45 | 240 | 1.03e-80 | 243 |
| MS.gene98811.t1 | AT5G54430 | 67.136 | 213 | 47 | 5 | 39 | 245 | 45 | 240 | 1.03e-80 | 243 |
| MS.gene98811.t1 | AT5G54430 | 67.136 | 213 | 47 | 5 | 39 | 245 | 45 | 240 | 1.27e-80 | 242 |
| MS.gene98811.t1 | AT5G54430 | 67.136 | 213 | 47 | 5 | 39 | 245 | 45 | 240 | 1.27e-80 | 242 |
| MS.gene98811.t1 | AT3G21210 | 44.538 | 238 | 67 | 7 | 22 | 246 | 8 | 193 | 2.54e-38 | 142 |
| MS.gene98811.t1 | AT3G17020 | 30.769 | 182 | 87 | 5 | 42 | 212 | 7 | 160 | 6.92e-16 | 73.2 |
| MS.gene98811.t1 | AT3G11930 | 28.261 | 184 | 115 | 6 | 36 | 216 | 28 | 197 | 7.08e-16 | 73.9 |
| MS.gene98811.t1 | AT3G11930 | 28.272 | 191 | 105 | 8 | 36 | 216 | 28 | 196 | 9.54e-16 | 73.6 |
| MS.gene98811.t1 | AT3G03270 | 31.667 | 180 | 93 | 5 | 39 | 212 | 2 | 157 | 1.89e-15 | 72.0 |
| MS.gene98811.t1 | AT3G11930 | 27.807 | 187 | 102 | 7 | 42 | 216 | 33 | 198 | 3.33e-15 | 72.4 |
| MS.gene98811.t1 | AT3G58450 | 26.738 | 187 | 105 | 4 | 44 | 220 | 32 | 196 | 7.71e-14 | 68.6 |
| MS.gene98811.t1 | AT3G53990 | 25.862 | 174 | 105 | 4 | 42 | 212 | 5 | 157 | 3.97e-13 | 65.9 |
| MS.gene98811.t1 | AT1G09740 | 28.723 | 188 | 110 | 6 | 37 | 219 | 3 | 171 | 4.65e-12 | 63.2 |
| MS.gene98811.t1 | AT1G09740 | 28.723 | 188 | 110 | 6 | 37 | 219 | 3 | 171 | 4.65e-12 | 63.2 |
| MS.gene98811.t1 | AT3G11930 | 25.121 | 207 | 118 | 6 | 36 | 216 | 28 | 223 | 6.13e-12 | 63.5 |
Find 91 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTCGTATGCGGTGTTATT+GGG | 0.183511 | 8.1:+48320997 | None:intergenic |
| GGATTCGTATGCGGTGTTAT+TGG | 0.193524 | 8.1:+48320996 | None:intergenic |
| AGGGGTGGTGGATTCGGATT+TGG | 0.212027 | 8.1:+48320959 | None:intergenic |
| GGGGTGGTGGATTCGGATTT+GGG | 0.232115 | 8.1:+48320960 | None:intergenic |
| GGACTGGTGGCGAGGGGAGG+AGG | 0.266313 | 8.1:+48320939 | None:intergenic |
| ATGGCTTCTTCTTCTGAGTT+TGG | 0.269141 | 8.1:+48320712 | None:intergenic |
| GTTATTGGTGGCGATGTTTA+TGG | 0.271233 | 8.1:+48320693 | None:intergenic |
| ACGTCCTCTTCGGCGCTGAT+TGG | 0.283937 | 8.1:-48320765 | MS.gene98811:CDS |
| TATCATGATCCTTCACAATA+TGG | 0.299081 | 8.1:+48320554 | None:intergenic |
| GGGAGGAGGGGTGGTGGATT+CGG | 0.316430 | 8.1:+48320953 | None:intergenic |
| GGCGAGGGGAGGAGGGGTGG+TGG | 0.322940 | 8.1:+48320947 | None:intergenic |
| CGTCCTCTTCGGCGCTGATT+GGG | 0.327604 | 8.1:-48320764 | MS.gene98811:CDS |
| TTTACGACGGGCGCCGGCGG+TGG | 0.353192 | 8.1:+48320900 | None:intergenic |
| GAGTTGGTGTTGCGGCGGAC+TGG | 0.353376 | 8.1:+48320923 | None:intergenic |
| TTCTTATGTTCATGCGCAAC+AGG | 0.354187 | 8.1:+48320295 | None:intergenic |
| TGAGGCTGTTGTTGCTGTTA+AGG | 0.360083 | 8.1:-48320347 | MS.gene98811:CDS |
| GGAAGAGATCTCGGTGTTAT+TGG | 0.376841 | 8.1:+48320678 | None:intergenic |
| TTCACAATATGGATCTTATA+CGG | 0.381641 | 8.1:+48320565 | None:intergenic |
| ACTGGTGGCGAGGGGAGGAG+GGG | 0.386732 | 8.1:+48320941 | None:intergenic |
| ATCATGGGAAGCCGTGGATT+CGG | 0.394249 | 8.1:-48320481 | MS.gene98811:CDS |
| GGGTGGTGGATTCGGATTTG+GGG | 0.397867 | 8.1:+48320961 | None:intergenic |
| GGTGGCGAGGGGAGGAGGGG+TGG | 0.398627 | 8.1:+48320944 | None:intergenic |
| GGCGGACTGGTGGCGAGGGG+AGG | 0.400857 | 8.1:+48320936 | None:intergenic |
| TGGTCTTAGTGCTGTGATCA+TGG | 0.416404 | 8.1:-48320497 | MS.gene98811:CDS |
| CGGGCGCCGGCGGTGGGAGT+TGG | 0.422938 | 8.1:+48320907 | None:intergenic |
| GCATGAACATAAGAAAGGTT+AGG | 0.425323 | 8.1:-48320287 | None:intergenic |
| TGAGTTTGGATCGGTGTTGA+TGG | 0.428135 | 8.1:+48320726 | None:intergenic |
| GCCGGCGCCCGTCGTAAAAT+CGG | 0.442139 | 8.1:-48320895 | MS.gene98811:CDS |
| GACTGGTGGCGAGGGGAGGA+GGG | 0.444547 | 8.1:+48320940 | None:intergenic |
| TTCTTCTTCTGAGTTTGGAT+CGG | 0.445240 | 8.1:+48320717 | None:intergenic |
| TTGCGGCGGACTGGTGGCGA+GGG | 0.451016 | 8.1:+48320932 | None:intergenic |
| CGAGGGAGTGATGGGAAGCT+TGG | 0.451227 | 8.1:-48320448 | MS.gene98811:CDS |
| CATGAACATAAGAAAGGTTA+GGG | 0.460852 | 8.1:-48320286 | None:intergenic |
| TCTTCTTCTAGCTTCCGTTT+CGG | 0.464225 | 8.1:+48320652 | None:intergenic |
| GGTGGTGGATTCGGATTTGG+GGG | 0.466734 | 8.1:+48320962 | None:intergenic |
| GGATAACGAACAACAACAAC+AGG | 0.467960 | 8.1:+48320388 | None:intergenic |
| AGAGCGCGTACGCTGTACGC+TGG | 0.485481 | 8.1:-48320849 | MS.gene98811:CDS |
| TCAGCAGCATCTTTATCATC+AGG | 0.485969 | 8.1:+48320367 | None:intergenic |
| GAGGAGGATGACAGCATCAC+CGG | 0.487963 | 8.1:+48320804 | None:intergenic |
| TGTCTTGAAGTTGAGCGTCT+TGG | 0.488142 | 8.1:-48320517 | MS.gene98811:CDS |
| GATTCGGCGCGGTGCGTCGA+GGG | 0.488509 | 8.1:-48320465 | MS.gene98811:CDS |
| GCGGTGCGTCGAGGGAGTGA+TGG | 0.490584 | 8.1:-48320457 | MS.gene98811:CDS |
| CGGTGCGTCGAGGGAGTGAT+GGG | 0.495490 | 8.1:-48320456 | MS.gene98811:CDS |
| GACGCACCGCGCCGAATCCA+CGG | 0.498842 | 8.1:+48320470 | None:intergenic |
| GAGGGAGTGATGGGAAGCTT+GGG | 0.500539 | 8.1:-48320447 | MS.gene98811:CDS |
| AGCCCTACCGACGTCCTCTT+CGG | 0.508572 | 8.1:-48320775 | MS.gene98811:CDS |
| TTACGACGGGCGCCGGCGGT+GGG | 0.512180 | 8.1:+48320901 | None:intergenic |
| ATTCGTATGCGGTGTTATTG+GGG | 0.516187 | 8.1:+48320998 | None:intergenic |
| GGTCTTAGTGCTGTGATCAT+GGG | 0.521118 | 8.1:-48320496 | MS.gene98811:CDS |
| GTCCTCTTCGGCGCTGATTG+GGG | 0.529444 | 8.1:-48320763 | MS.gene98811:CDS |
| GTTGCGGCGGACTGGTGGCG+AGG | 0.531453 | 8.1:+48320931 | None:intergenic |
| GCAACACCAACTCCCACCGC+CGG | 0.537020 | 8.1:-48320913 | MS.gene98811:CDS |
| CGCCGAAGAGGACGTCGGTA+GGG | 0.540325 | 8.1:+48320773 | None:intergenic |
| TGTGAAGGATCATGATATGA+AGG | 0.542050 | 8.1:-48320548 | MS.gene98811:CDS |
| GGATTCGGCGCGGTGCGTCG+AGG | 0.545374 | 8.1:-48320466 | MS.gene98811:CDS |
| TTCTAGCTTCCGTTTCGGCG+TGG | 0.549588 | 8.1:+48320657 | None:intergenic |
| TTGGTGTTGCGGCGGACTGG+TGG | 0.551212 | 8.1:+48320926 | None:intergenic |
| CGGTAGGGCTGACGTGGAGG+AGG | 0.552310 | 8.1:+48320788 | None:intergenic |
| GGAATCTGAGCTTCCTTGAG+TGG | 0.553958 | 8.1:+48320586 | None:intergenic |
| GAGCGCGTACGCTGTACGCT+GGG | 0.557709 | 8.1:-48320848 | MS.gene98811:CDS |
| AGAGATCTCGGTGTTATTGG+TGG | 0.561192 | 8.1:+48320681 | None:intergenic |
| TGCTGTTAAGGAAGGTGATG+AGG | 0.561629 | 8.1:-48320335 | MS.gene98811:CDS |
| GGACGTCGGTAGGGCTGACG+TGG | 0.563280 | 8.1:+48320782 | None:intergenic |
| TGATCTTGCAAAACCACTCA+AGG | 0.567224 | 8.1:-48320599 | MS.gene98811:CDS |
| TTTCGGCGTGGAAGAGATCT+CGG | 0.567577 | 8.1:+48320669 | None:intergenic |
| GGCGGTGGGAGTTGGTGTTG+CGG | 0.569635 | 8.1:+48320915 | None:intergenic |
| AGATCTCTTCCACGCCGAAA+CGG | 0.575017 | 8.1:-48320666 | MS.gene98811:CDS |
| GGGTCGGATGTAGTGTTGTA+CGG | 0.581567 | 8.1:+48320825 | None:intergenic |
| GCGCCGAAGAGGACGTCGGT+AGG | 0.584829 | 8.1:+48320772 | None:intergenic |
| GCTGTTAAGGAAGGTGATGA+GGG | 0.586963 | 8.1:-48320334 | MS.gene98811:CDS |
| GTTGCGCATGAACATAAGAA+AGG | 0.592839 | 8.1:-48320292 | MS.gene98811:CDS |
| AGGAGGATGACAGCATCACC+GGG | 0.600265 | 8.1:+48320805 | None:intergenic |
| GCTCTCGTCGGAGAGGTCAA+CGG | 0.611136 | 8.1:+48320867 | None:intergenic |
| AACCCCAATCAGCGCCGAAG+AGG | 0.613753 | 8.1:+48320761 | None:intergenic |
| GGTGTTGATGGAGAGATCGA+TGG | 0.618449 | 8.1:+48320738 | None:intergenic |
| CGTCGGTAGGGCTGACGTGG+AGG | 0.619707 | 8.1:+48320785 | None:intergenic |
| TGCGGCGGACTGGTGGCGAG+GGG | 0.622611 | 8.1:+48320933 | None:intergenic |
| GCTGTTGTTGCTGTTAAGGA+AGG | 0.624018 | 8.1:-48320343 | MS.gene98811:CDS |
| TACAGCGTACGCGCTCTCGT+CGG | 0.626255 | 8.1:+48320855 | None:intergenic |
| GGTGGGAGTTGGTGTTGCGG+CGG | 0.628633 | 8.1:+48320918 | None:intergenic |
| TGATGATAAAGATGCTGCTG+AGG | 0.632652 | 8.1:-48320365 | MS.gene98811:CDS |
| GGATGACAGCATCACCGGGT+CGG | 0.651732 | 8.1:+48320809 | None:intergenic |
| GTATAAGATCCATATTGTGA+AGG | 0.654145 | 8.1:-48320563 | MS.gene98811:CDS |
| AGGATCATGATATGAAGGAA+CGG | 0.667933 | 8.1:-48320543 | MS.gene98811:CDS |
| TTGTGGGTCGGATTCGTATG+CGG | 0.682438 | 8.1:+48320987 | None:intergenic |
| CGTACGCGCTCTCGTCGGAG+AGG | 0.686951 | 8.1:+48320860 | None:intergenic |
| GTACAACACTACATCCGACC+CGG | 0.689396 | 8.1:-48320823 | MS.gene98811:CDS |
| GCTGTGATCATGGGAAGCCG+TGG | 0.697951 | 8.1:-48320487 | MS.gene98811:CDS |
| ATCAGCGCCGAAGAGGACGT+CGG | 0.716462 | 8.1:+48320768 | None:intergenic |
| GGGAAGCCGTGGATTCGGCG+CGG | 0.728530 | 8.1:-48320476 | MS.gene98811:CDS |
| AAGATCAGCAGACTTCGTCG+CGG | 0.796336 | 8.1:+48320615 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TTCACAATATGGATCTTATA+CGG | + | chr8.1:48320732-48320751 | None:intergenic | 25.0% |
| GTATAAGATCCATATTGTGA+AGG | - | chr8.1:48320731-48320750 | MS.gene98811:CDS | 30.0% | |
| TATCATGATCCTTCACAATA+TGG | + | chr8.1:48320743-48320762 | None:intergenic | 30.0% | |
| AGGATCATGATATGAAGGAA+CGG | - | chr8.1:48320751-48320770 | MS.gene98811:CDS | 35.0% | |
| TGTGAAGGATCATGATATGA+AGG | - | chr8.1:48320746-48320765 | MS.gene98811:CDS | 35.0% | |
| TTCTTCTTCTGAGTTTGGAT+CGG | + | chr8.1:48320580-48320599 | None:intergenic | 35.0% | |
| ATGGCTTCTTCTTCTGAGTT+TGG | + | chr8.1:48320585-48320604 | None:intergenic | 40.0% | |
| GGATAACGAACAACAACAAC+AGG | + | chr8.1:48320909-48320928 | None:intergenic | 40.0% | |
| GTTGCGCATGAACATAAGAA+AGG | - | chr8.1:48321002-48321021 | MS.gene98811:CDS | 40.0% | |
| TCAGCAGCATCTTTATCATC+AGG | + | chr8.1:48320930-48320949 | None:intergenic | 40.0% | |
| TGATCTTGCAAAACCACTCA+AGG | - | chr8.1:48320695-48320714 | MS.gene98811:CDS | 40.0% | |
| TGATGATAAAGATGCTGCTG+AGG | - | chr8.1:48320929-48320948 | MS.gene98811:CDS | 40.0% | |
| TTCTTATGTTCATGCGCAAC+AGG | + | chr8.1:48321002-48321021 | None:intergenic | 40.0% | |
| !! | ATTCGTATGCGGTGTTATTG+GGG | + | chr8.1:48320299-48320318 | None:intergenic | 40.0% |
| !! | GATTCGTATGCGGTGTTATT+GGG | + | chr8.1:48320300-48320319 | None:intergenic | 40.0% |
| !! | GTTATTGGTGGCGATGTTTA+TGG | + | chr8.1:48320604-48320623 | None:intergenic | 40.0% |
| !! | TCTTCTTCTAGCTTCCGTTT+CGG | + | chr8.1:48320645-48320664 | None:intergenic | 40.0% |
| GCTGTTAAGGAAGGTGATGA+GGG | - | chr8.1:48320960-48320979 | MS.gene98811:CDS | 45.0% | |
| GGTCTTAGTGCTGTGATCAT+GGG | - | chr8.1:48320798-48320817 | MS.gene98811:CDS | 45.0% | |
| TGCTGTTAAGGAAGGTGATG+AGG | - | chr8.1:48320959-48320978 | MS.gene98811:CDS | 45.0% | |
| TGTCTTGAAGTTGAGCGTCT+TGG | - | chr8.1:48320777-48320796 | MS.gene98811:CDS | 45.0% | |
| ! | GCTGTTGTTGCTGTTAAGGA+AGG | - | chr8.1:48320951-48320970 | MS.gene98811:CDS | 45.0% |
| ! | TGAGGCTGTTGTTGCTGTTA+AGG | - | chr8.1:48320947-48320966 | MS.gene98811:CDS | 45.0% |
| ! | TGGTCTTAGTGCTGTGATCA+TGG | - | chr8.1:48320797-48320816 | MS.gene98811:CDS | 45.0% |
| !! | AGAGATCTCGGTGTTATTGG+TGG | + | chr8.1:48320616-48320635 | None:intergenic | 45.0% |
| !! | GGAAGAGATCTCGGTGTTAT+TGG | + | chr8.1:48320619-48320638 | None:intergenic | 45.0% |
| !! | GGATTCGTATGCGGTGTTAT+TGG | + | chr8.1:48320301-48320320 | None:intergenic | 45.0% |
| !! | TGAGTTTGGATCGGTGTTGA+TGG | + | chr8.1:48320571-48320590 | None:intergenic | 45.0% |
| AAGATCAGCAGACTTCGTCG+CGG | + | chr8.1:48320682-48320701 | None:intergenic | 50.0% | |
| AGATCTCTTCCACGCCGAAA+CGG | - | chr8.1:48320628-48320647 | MS.gene98811:CDS | 50.0% | |
| ATCATGGGAAGCCGTGGATT+CGG | - | chr8.1:48320813-48320832 | MS.gene98811:CDS | 50.0% | |
| ATTCGGATTTGGGGGAGTTG+TGG | + | chr8.1:48320327-48320346 | None:intergenic | 50.0% | |
| GGAATCTGAGCTTCCTTGAG+TGG | + | chr8.1:48320711-48320730 | None:intergenic | 50.0% | |
| GGGTCGGATGTAGTGTTGTA+CGG | + | chr8.1:48320472-48320491 | None:intergenic | 50.0% | |
| GTACAACACTACATCCGACC+CGG | - | chr8.1:48320471-48320490 | MS.gene98811:CDS | 50.0% | |
| TTCGGATTTGGGGGAGTTGT+GGG | + | chr8.1:48320326-48320345 | None:intergenic | 50.0% | |
| TTGTGGGTCGGATTCGTATG+CGG | + | chr8.1:48320310-48320329 | None:intergenic | 50.0% | |
| TTTCGGCGTGGAAGAGATCT+CGG | + | chr8.1:48320628-48320647 | None:intergenic | 50.0% | |
| !! | GGTGTTGATGGAGAGATCGA+TGG | + | chr8.1:48320559-48320578 | None:intergenic | 50.0% |
| AGGAGGATGACAGCATCACC+GGG | + | chr8.1:48320492-48320511 | None:intergenic | 55.0% | |
| GAGGAGGATGACAGCATCAC+CGG | + | chr8.1:48320493-48320512 | None:intergenic | 55.0% | |
| GATTTGGGGGAGTTGTGGGT+CGG | + | chr8.1:48320322-48320341 | None:intergenic | 55.0% | |
| ! | GAGGGAGTGATGGGAAGCTT+GGG | - | chr8.1:48320847-48320866 | MS.gene98811:CDS | 55.0% |
| !! | AGGGGTGGTGGATTCGGATT+TGG | + | chr8.1:48320338-48320357 | None:intergenic | 55.0% |
| !! | GGGGTGGTGGATTCGGATTT+GGG | + | chr8.1:48320337-48320356 | None:intergenic | 55.0% |
| !! | GGGTGGTGGATTCGGATTTG+GGG | + | chr8.1:48320336-48320355 | None:intergenic | 55.0% |
| !! | GGTGGTGGATTCGGATTTGG+GGG | + | chr8.1:48320335-48320354 | None:intergenic | 55.0% |
| !! | TTCTAGCTTCCGTTTCGGCG+TGG | + | chr8.1:48320640-48320659 | None:intergenic | 55.0% |
| AGCCCTACCGACGTCCTCTT+CGG | - | chr8.1:48320519-48320538 | MS.gene98811:CDS | 60.0% | |
| GCTCTCGTCGGAGAGGTCAA+CGG | + | chr8.1:48320430-48320449 | None:intergenic | 60.0% | |
| GCTGTGATCATGGGAAGCCG+TGG | - | chr8.1:48320807-48320826 | MS.gene98811:CDS | 60.0% | |
| GGATGACAGCATCACCGGGT+CGG | + | chr8.1:48320488-48320507 | None:intergenic | 60.0% | |
| TACAGCGTACGCGCTCTCGT+CGG | + | chr8.1:48320442-48320461 | None:intergenic | 60.0% | |
| ! | AACCCCAATCAGCGCCGAAG+AGG | + | chr8.1:48320536-48320555 | None:intergenic | 60.0% |
| ! | ATCAGCGCCGAAGAGGACGT+CGG | + | chr8.1:48320529-48320548 | None:intergenic | 60.0% |
| ! | CGAGGGAGTGATGGGAAGCT+TGG | - | chr8.1:48320846-48320865 | MS.gene98811:CDS | 60.0% |
| !! | ACGTCCTCTTCGGCGCTGAT+TGG | - | chr8.1:48320529-48320548 | MS.gene98811:CDS | 60.0% |
| !! | CGTCCTCTTCGGCGCTGATT+GGG | - | chr8.1:48320530-48320549 | MS.gene98811:CDS | 60.0% |
| !! | GTCCTCTTCGGCGCTGATTG+GGG | - | chr8.1:48320531-48320550 | MS.gene98811:CDS | 60.0% |
| !!! | CGGCGACGCCGATTTTACGA+CGG | + | chr8.1:48320410-48320429 | None:intergenic | 60.0% |
| !!! | GGCGACGCCGATTTTACGAC+GGG | + | chr8.1:48320409-48320428 | None:intergenic | 60.0% |
| AGAGCGCGTACGCTGTACGC+TGG | - | chr8.1:48320445-48320464 | MS.gene98811:CDS | 65.0% | |
| CGCCGAAGAGGACGTCGGTA+GGG | + | chr8.1:48320524-48320543 | None:intergenic | 65.0% | |
| CGGTGCGTCGAGGGAGTGAT+GGG | - | chr8.1:48320838-48320857 | MS.gene98811:CDS | 65.0% | |
| GAGCGCGTACGCTGTACGCT+GGG | - | chr8.1:48320446-48320465 | MS.gene98811:CDS | 65.0% | |
| GCAACACCAACTCCCACCGC+CGG | - | chr8.1:48320381-48320400 | MS.gene98811:CDS | 65.0% | |
| GCCGGCGCCCGTCGTAAAAT+CGG | - | chr8.1:48320399-48320418 | MS.gene98811:CDS | 65.0% | |
| !! | GAGTTGGTGTTGCGGCGGAC+TGG | + | chr8.1:48320374-48320393 | None:intergenic | 65.0% |
| !! | GCCGATTTTACGACGGGCGC+CGG | + | chr8.1:48320403-48320422 | None:intergenic | 65.0% |
| !! | GGCGGTGGGAGTTGGTGTTG+CGG | + | chr8.1:48320382-48320401 | None:intergenic | 65.0% |
| !! | GGGAGGAGGGGTGGTGGATT+CGG | + | chr8.1:48320344-48320363 | None:intergenic | 65.0% |
| !! | GGTGGGAGTTGGTGTTGCGG+CGG | + | chr8.1:48320379-48320398 | None:intergenic | 65.0% |
| !! | TTGGTGTTGCGGCGGACTGG+TGG | + | chr8.1:48320371-48320390 | None:intergenic | 65.0% |
| !!! | GATTTTACGACGGGCGCCGG+CGG | + | chr8.1:48320400-48320419 | None:intergenic | 65.0% |
| CGGTAGGGCTGACGTGGAGG+AGG | + | chr8.1:48320509-48320528 | None:intergenic | 70.0% | |
| CGTACGCGCTCTCGTCGGAG+AGG | + | chr8.1:48320437-48320456 | None:intergenic | 70.0% | |
| CGTCGGTAGGGCTGACGTGG+AGG | + | chr8.1:48320512-48320531 | None:intergenic | 70.0% | |
| GACGCACCGCGCCGAATCCA+CGG | + | chr8.1:48320827-48320846 | None:intergenic | 70.0% | |
| GATTCGGCGCGGTGCGTCGA+GGG | - | chr8.1:48320829-48320848 | MS.gene98811:CDS | 70.0% | |
| GCGCCGAAGAGGACGTCGGT+AGG | + | chr8.1:48320525-48320544 | None:intergenic | 70.0% | |
| GCGGTGCGTCGAGGGAGTGA+TGG | - | chr8.1:48320837-48320856 | MS.gene98811:CDS | 70.0% | |
| GGACGTCGGTAGGGCTGACG+TGG | + | chr8.1:48320515-48320534 | None:intergenic | 70.0% | |
| GGGAAGCCGTGGATTCGGCG+CGG | - | chr8.1:48320818-48320837 | MS.gene98811:CDS | 70.0% | |
| ! | ACTGGTGGCGAGGGGAGGAG+GGG | + | chr8.1:48320356-48320375 | None:intergenic | 70.0% |
| ! | GACTGGTGGCGAGGGGAGGA+GGG | + | chr8.1:48320357-48320376 | None:intergenic | 70.0% |
| !! | TTGCGGCGGACTGGTGGCGA+GGG | + | chr8.1:48320365-48320384 | None:intergenic | 70.0% |
| GGATTCGGCGCGGTGCGTCG+AGG | - | chr8.1:48320828-48320847 | MS.gene98811:CDS | 75.0% | |
| ! | GGACTGGTGGCGAGGGGAGG+AGG | + | chr8.1:48320358-48320377 | None:intergenic | 75.0% |
| !! | GTTGCGGCGGACTGGTGGCG+AGG | + | chr8.1:48320366-48320385 | None:intergenic | 75.0% |
| !! | TGCGGCGGACTGGTGGCGAG+GGG | + | chr8.1:48320364-48320383 | None:intergenic | 75.0% |
| !! | TTACGACGGGCGCCGGCGGT+GGG | + | chr8.1:48320396-48320415 | None:intergenic | 75.0% |
| !! | TTTACGACGGGCGCCGGCGG+TGG | + | chr8.1:48320397-48320416 | None:intergenic | 75.0% |
| ! | GGCGAGGGGAGGAGGGGTGG+TGG | + | chr8.1:48320350-48320369 | None:intergenic | 80.0% |
| ! | GGTGGCGAGGGGAGGAGGGG+TGG | + | chr8.1:48320353-48320372 | None:intergenic | 80.0% |
| !!! | GGCGGACTGGTGGCGAGGGG+AGG | + | chr8.1:48320361-48320380 | None:intergenic | 80.0% |
| !!! | CGGGCGCCGGCGGTGGGAGT+TGG | + | chr8.1:48320390-48320409 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 48320288 | 48321028 | 48320288 | ID=MS.gene98811 |
| chr8.1 | mRNA | 48320288 | 48321028 | 48320288 | ID=MS.gene98811.t1;Parent=MS.gene98811 |
| chr8.1 | exon | 48320288 | 48321028 | 48320288 | ID=MS.gene98811.t1.exon1;Parent=MS.gene98811.t1 |
| chr8.1 | CDS | 48320288 | 48321028 | 48320288 | ID=cds.MS.gene98811.t1;Parent=MS.gene98811.t1 |
| Gene Sequence |
| Protein sequence |
