AlfalfaGEDB | MS.gene98838

M. sativa cultivar XinJiangDaYe / MS.gene98838

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98838.t1	XP_003620480.1	97.6	328	5	1	1	328	1	325	7.10E-185	656.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98838.t1	O04017	77.9	154	28	3	5	152	17	170	8.8e-67	255.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98838.t1	G7KN39	97.6	328	5	1	1	328	1	325	5.1e-185	656.4

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene98838.t1	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene05457	MS.gene98838	0.880339	5.96E-70	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98838.t1	MTR_6g084430	97.561	328	5	1	1	328	1	325	0.0	665
MS.gene98838.t1	MTR_3g435150	57.384	237	88	4	5	229	16	251	1.59e-88	268
MS.gene98838.t1	MTR_4g108760	66.332	199	54	4	4	198	16	205	1.68e-88	270
MS.gene98838.t1	MTR_3g109340	71.429	175	38	2	2	174	19	183	1.57e-86	264
MS.gene98838.t1	MTR_3g109340	71.023	176	38	3	2	174	19	184	9.40e-85	260
MS.gene98838.t1	MTR_1g008740	76.250	160	34	3	2	157	10	169	2.70e-83	256
MS.gene98838.t1	MTR_1g008740	76.250	160	34	3	2	157	24	183	3.82e-83	256
MS.gene98838.t1	MTR_2g078700	75.159	157	33	3	2	152	20	176	3.37e-82	254
MS.gene98838.t1	MTR_6g012670	70.701	157	42	1	5	157	20	176	4.14e-81	249
MS.gene98838.t1	MTR_7g085260	67.665	167	46	3	4	162	16	182	2.61e-77	241

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98838.t1	AT3G18400	58.407	339	105	12	1	328	1	314	1.57e-118	344
MS.gene98838.t1	AT5G61430	74.684	158	36	2	4	157	15	172	3.00e-84	258
MS.gene98838.t1	AT5G53950	76.923	156	30	3	3	152	15	170	3.58e-84	259
MS.gene98838.t1	AT2G24430	75.472	159	36	2	2	157	13	171	1.54e-83	255
MS.gene98838.t1	AT2G24430	75.472	159	36	2	2	157	13	171	1.54e-83	255
MS.gene98838.t1	AT5G07680	72.152	158	40	2	4	157	2	159	2.53e-82	252
MS.gene98838.t1	AT5G07680	72.152	158	40	2	4	157	16	173	3.62e-82	252
MS.gene98838.t1	AT5G39610	73.125	160	38	2	4	158	19	178	3.38e-81	248
MS.gene98838.t1	AT5G18270	72.549	153	37	2	4	151	20	172	7.46e-80	246
MS.gene98838.t1	AT5G18270	71.895	153	38	2	4	151	20	172	2.54e-79	245

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Find 67 sgRNAs with CRISPR-Local

Find 132 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATAAGGAAATATTTCG+TGG	0.545961	6.1:-73941810	MS.gene98838:CDS
AAATAACCTGGAAGGTCCCA+AGG	0.580335	6.1:+73942803	None:intergenic
AAGGGGTGAGAAAAGTAATT+GGG	0.515394	6.1:-73941733	MS.gene98838:CDS
AATATTTCGTGGTGGAGTTT+TGG	0.365969	6.1:-73941799	MS.gene98838:CDS
ACAAATTCATCATCTTCATG+TGG	0.605409	6.1:-73940738	MS.gene98838:CDS
ACAAGAGCAACCATTCAATT+TGG	0.264812	6.1:-73940358	MS.gene98838:CDS
ACACCACTTTCGAACTTCAA+AGG	0.552288	6.1:-73941682	MS.gene98838:intron
ACATGAATTTGACAATGAAT+TGG	0.349230	6.1:-73940650	MS.gene98838:CDS
ACCAAATTCATTCACTATTG+AGG	0.421602	6.1:+73940791	None:intergenic
ACCAATCGAGCCACTGAATC+AGG	0.295623	6.1:-73941852	MS.gene98838:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAAATTCATCATCTTCATG+TGG	-	chr6.1:73942547-73942566	MS.gene98838:intron	30.0%
ACCAAATTCATTCACTATTG+AGG	+	chr6.1:73942497-73942516	None:intergenic	30.0%
ACCAATAATCAACAAAGTCT+TGG	-	chr6.1:73940995-73941014	MS.gene98838:intron	30.0%
ACCTCAATAGTGAATGAATT+TGG	-	chr6.1:73942493-73942512	MS.gene98838:intron	30.0%
AGAGATAGAAAATATCCAAC+TGG	-	chr6.1:73941403-73941422	MS.gene98838:intron	30.0%
ATGAACAAAAATAACCTGGA+AGG	+	chr6.1:73940493-73940512	None:intergenic	30.0%
ATTAGTTACATGGTGTACTT+AGG	+	chr6.1:73941090-73941109	None:intergenic	30.0%
GTGTATAATTCATACAGGTA+AGG	-	chr6.1:73941342-73941361	MS.gene98838:intron	30.0%
TGTTTGTCCTTGAATAATGT+TGG	+	chr6.1:73942578-73942597	None:intergenic	30.0%
TTTGGATTAAGCAAGTTAGA+AGG	+	chr6.1:73942694-73942713	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.1	gene	73940344	73942963	73940344	ID=MS.gene98838
chr6.1	mRNA	73940344	73942963	73940344	ID=MS.gene98838.t1;Parent=MS.gene98838
chr6.1	exon	73942810	73942963	73942810	ID=MS.gene98838.t1.exon1;Parent=MS.gene98838.t1
chr6.1	CDS	73942810	73942963	73942810	ID=cds.MS.gene98838.t1;Parent=MS.gene98838.t1
chr6.1	exon	73941683	73941948	73941683	ID=MS.gene98838.t1.exon2;Parent=MS.gene98838.t1
chr6.1	CDS	73941683	73941948	73941683	ID=cds.MS.gene98838.t1;Parent=MS.gene98838.t1
chr6.1	exon	73940344	73940910	73940344	ID=MS.gene98838.t1.exon3;Parent=MS.gene98838.t1
chr6.1	CDS	73940344	73940910	73940344	ID=cds.MS.gene98838.t1;Parent=MS.gene98838.t1

Gene Sequence

>MS.gene98838

ATGGAGGAAAATCTACCTCCTGGTTTTAGGTTTCATCCAACAGATGAAGAACTCATCACACACTATCTTACAATGAAAATTTCTGATGCTTCCTTCACATCCAAAGCTGTTGCAGTTGTTGATCTCAACAAGTGTGAACCTTGGGACCTTCCAGGTTATTTTTGTTCATATCTCTCTTTCTTAAAAACTATCCCTTTTATTTTTGTTCTATTTAAAACTATCCCTTTTATTTTTGTTCTATATACTTTGTTTGATTATAGATTTTCAAGGGGTTTTAGTCTTCGACTAAACTTAATTTAGAAGGATTTTTTTTTTTTTTTTTTTGTAGAAATTATTATTAGAAGGATTGCAACTTGTTGATGAATATATGTGTTTATATAAACTAATTCAAAATTTGAAGATATTTAAAATAATAATAAATAAACTATACTATTAATTACTTTTTTGGTTAATTAAGAGTTAATAACATCCTTTCTCTTAATTTGTTTATATGATTATACAATTTTATATTTCACTAGCTTAAATTTCTTAACCAGTTAATAACTTATATATAAAATTTAATTTTTCTTTGAGGAAATAAAATTAAACTTTTGTATATATTGATCTGGGAGATGAAAATTGATCATTTATATCTCTTTTTTAGTTTTATAAACCAATAATCAACAAAGTCTTGGTTATTTTGCTTTTATGTCTCTTAATTCATTACTATATAGTAGCTTGACCCATTCTTACTTTGAAAATAACCTAAGTACACCATGTAACTAATTTTCAAAATATAACACACACAAATTCAAAATATATTATGGTATTTCAACTCTTTAAAAAAATTAATGGTTAGTTTGAATAGTAACAAAAGTTGACATTAATTGGTATAGCTACTAGCTGATTCGTTTGCTTATAAAAATAAAGTAACAAACTTGACATTAATTGATATAGCTACTAGATATTTTTTTATTTAGTGAACACAAAATCAATAAATAATTAATCATGTTTGTGTGGTGTATAATTCATACAGGTAAGGCTTCAATGGGGGAGAAGGAATGGTATTTTTTCAGTGTGAGAGATAGAAAATATCCAACTGGACTTAGAACCAATCGAGCCACTGAATCAGGGTATTGGAAAACCACTGGAAAAGATAAGGAAATATTTCGTGGTGGAGTTTTGGTAGGAATGAAGAAAACCCTAGTGTTTTATAAGGGTAGGGCTCCAAGGGGTGAGAAAAGTAATTGGGTCATGCATGAATATAGACTAGAAAACAAACACCACTTTCGAACTTCAAAGGTAAGTGCTCTACATTGCATTGCATTGCATTCATTCCCATGTTTTAATATTTTCTTAGTCACATAAAACTCATTTTAGTTTTTACAAGGACAAATGTTAATTAGTATAGTATTATTTTGTTGGTGGTGGATCATCAAACTAATCTCAACTTCTTTATCATTCAATCTACTTTTCAACTCCTTTACCCAACCATAAGCCATCCTTAAAAACTTTCCATAAAAATTATATGATTACTAATAATCATTTAATTTTAGTAGTCCATAATTAATTTTTATAGTTTTTTTGTACAATCAAAAGTGATATTTGTCAAGATAAAATAACAAATTGAGAAAAAAGTTACGAGACTTTATGGTTCGCTAACATTAACAACTAGTGATTTAAAAACATTTTTTACATTGATATCTACATCGATAAAAAACTCATTTAACATTCAATTTAACAATGATTTAGTGATTGAGTATTTGAAAATTCAATCACTAAATCAGACGCTAGAGGCACTAGAATATTTTGATTACTATGTTGGTCAATACATATCATTATTTTAAAAAAATACAAGATAATTGTTCATCTCAACAGTCTCTTTTCGCCTTGTTAATAAGTAAATAGTTTTTACAACATTTTCACCGTTTTCGAAAATGCAAGACAATCATTCATTTAATAGTCGATTTTCTCTTTGGTAACAAGTCAAATTAACATATATTTTTTTTAAATGGAAAGTGAAAATACTAGATTTCATATATGGTTGAGAATTAACATTTTGCAATTTTTGCAGGATGAATGGGTGGTTTGTAGGGTTTTCCAAAAGAGCATATCAACAAAAAAACCACAACAAACATCATTTTCCCAACCAGAATCTCCATGTGACACAACCTCAATAGTGAATGAATTTGGTGATGTTGAGCTTCCAAATCTAAATGGTATTACAAATTCATCATCTTCATGTGGATTCACCAACATTATTCAAGGACAAACATTCAACACTCATGATGATCTCAATAATGTTAACACAAACATGAATTTGACAATGAATTGGCCATCTTCAAGTCATGTTCCATCTCTACCATGGCCTTCTAACTTGCTTAATCCAAATAATATTTCAGTAAATTCATTACTTCTAAAAGCATTACAACTTAGGAATTATCAACATCAAAGAGAAGTTGCAGCTACAAATACTCATTTTGCACCATACATGCCTCAACAAGGAGTAATATCTCATCACCAACTTGGAACTGATCTAAGTAATAATTCAAATGATCTAAGTGCTTCTTCTTCAAAAGTTTTAGAGTGTATGCCACAGCATCAACAAGAGCAACCATTCAATTTGGACTCCATTTGGTGA

Protein sequence

>MS.gene98838.t1

MEENLPPGFRFHPTDEELITHYLTMKISDASFTSKAVAVVDLNKCEPWDLPGKASMGEKEWYFFSVRDRKYPTGLRTNRATESGYWKTTGKDKEIFRGGVLVGMKKTLVFYKGRAPRGEKSNWVMHEYRLENKHHFRTSKDEWVVCRVFQKSISTKKPQQTSFSQPESPCDTTSIVNEFGDVELPNLNGITNSSSSCGFTNIIQGQTFNTHDDLNNVNTNMNLTMNWPSSSHVPSLPWPSNLLNPNNISVNSLLLKALQLRNYQHQREVAATNTHFAPYMPQQGVISHHQLGTDLSNNSNDLSASSSKVLECMPQHQQEQPFNLDSIW