Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98858.t1 | Q07202.1 | 80.6 | 191 | 5 | 1 | 1 | 191 | 1 | 159 | 4.60E-16 | 95.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98858.t1 | Q07202 | 80.6 | 191 | 5 | 1 | 1 | 191 | 1 | 159 | 1.1e-18 | 95.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98858.t1 | G7K7D5 | 98.1 | 52 | 1 | 0 | 1 | 52 | 1 | 52 | 1.2e-15 | 93.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene061113 | MS.gene98858 | 0.804895 | 1.73E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98858.t1 | MTR_5g084460 | 68.354 | 237 | 66 | 2 | 1 | 236 | 1 | 229 | 1.33e-22 | 92.4 |
| MS.gene98858.t1 | MTR_5g084570 | 50.282 | 177 | 85 | 2 | 1 | 176 | 1 | 175 | 6.32e-22 | 89.4 |
| MS.gene98858.t1 | MTR_5g084470 | 97.959 | 49 | 1 | 0 | 1 | 49 | 1 | 49 | 1.81e-17 | 78.2 |
| MS.gene98858.t1 | MTR_5g084470 | 97.959 | 49 | 1 | 0 | 1 | 49 | 1 | 49 | 2.23e-17 | 78.2 |
| MS.gene98858.t1 | MTR_5g084530 | 57.246 | 138 | 49 | 1 | 1 | 138 | 1 | 128 | 4.40e-16 | 72.8 |
| MS.gene98858.t1 | MTR_5g084540 | 65.000 | 100 | 18 | 2 | 1 | 99 | 1 | 84 | 5.16e-16 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 129 sgRNAs with CRISPR-Local
Find 101 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTATTACCATCTCCATATT+TGG | 0.159531 | 5.2:+72149275 | None:intergenic |
| GTTATAACCACCACCATATT+TGG | 0.184009 | 5.2:+72149674 | None:intergenic |
| TTGAACAATGGATTCGAAAA+AGG | 0.281503 | 5.2:-72150192 | None:intergenic |
| GAAGTAAATGATGCCAAATA+TGG | 0.319257 | 5.2:-72149288 | MS.gene98858:CDS |
| GAAGTAAACGATGCCAAATA+TGG | 0.342429 | 5.2:-72149687 | MS.gene98858:CDS |
| GGTGGAGGTCACGGTGGTCA+TGG | 0.421667 | 5.2:-72149354 | MS.gene98858:CDS |
| GGTGGAGGTCACGGTGGTCA+TGG | 0.425233 | 5.2:-72149396 | MS.gene98858:CDS |
| TTTGAGTGTTGTCCTCAGTT+TGG | 0.439668 | 5.2:+72149133 | None:intergenic |
| CATGCTAGGCCTCTTGGCTA+TGG | 0.442877 | 5.2:-72150162 | MS.gene98858:CDS |
| GGTGGTTACAATGGTGGAGG+TGG | 0.449116 | 5.2:-72149489 | MS.gene98858:CDS |
| GGTGGTTACAATGGTGGAGG+TGG | 0.449116 | 5.2:-72149528 | MS.gene98858:CDS |
| GGTGGTTACAATGGTGGAGG+TGG | 0.449116 | 5.2:-72149567 | MS.gene98858:CDS |
| CACGGTGGACATGGTGGCCA+TGG | 0.451717 | 5.2:-72149180 | MS.gene98858:CDS |
| CACGGTGGACACGGTGGACA+TGG | 0.456773 | 5.2:-72149189 | MS.gene98858:CDS |
| GGTGGATACAATGGTGGAGG+TGG | 0.457644 | 5.2:-72149450 | MS.gene98858:CDS |
| AATCCTCATGCTAGGCCTCT+TGG | 0.463972 | 5.2:-72150168 | MS.gene98858:CDS |
| CATGGTGGCCATGGTGGTCA+CGG | 0.466257 | 5.2:-72149171 | MS.gene98858:CDS |
| CACGGTGGTCATGGTGGAGG+TGG | 0.469838 | 5.2:-72149387 | MS.gene98858:CDS |
| AACTTCCACCGATGCTAAGA+AGG | 0.471120 | 5.2:-72150099 | MS.gene98858:CDS |
| GGAGGTGGTTACAATGGTGG+TGG | 0.479043 | 5.2:-72149372 | MS.gene98858:CDS |
| GGAGGTGGTTACAATGGTGG+TGG | 0.479043 | 5.2:-72149414 | MS.gene98858:CDS |
| GGTCACGGTGGTCATGGTGG+AGG | 0.488013 | 5.2:-72149390 | MS.gene98858:CDS |
| GGTGGTTACCACAATGGTGG+AGG | 0.499176 | 5.2:-72149609 | MS.gene98858:CDS |
| GTAACCACCACCACCGTTGT+GGG | 0.499800 | 5.2:+72149503 | None:intergenic |
| GTAACCACCACCACCGTTGT+GGG | 0.499800 | 5.2:+72149542 | None:intergenic |
| GTAACCACCACCACCGTTGT+GGG | 0.499800 | 5.2:+72149581 | None:intergenic |
| GGTTACCACAATGGTGGAGG+TGG | 0.500351 | 5.2:-72149606 | MS.gene98858:CDS |
| GGTGGTTACAATGGTGGTGG+AGG | 0.504299 | 5.2:-72149369 | MS.gene98858:CDS |
| GGTGGTTACAATGGTGGTGG+AGG | 0.504299 | 5.2:-72149411 | MS.gene98858:CDS |
| GGTGGTTCCCACAACGGTGG+TGG | 0.506318 | 5.2:-72149471 | MS.gene98858:CDS |
| GGTGGTTCCCACAACGGTGG+TGG | 0.506318 | 5.2:-72149510 | MS.gene98858:CDS |
| GGTGGTTCCCACAACGGTGG+TGG | 0.506318 | 5.2:-72149549 | MS.gene98858:CDS |
| GGTGGTTCCCACAACGGTGG+TGG | 0.506318 | 5.2:-72149588 | MS.gene98858:CDS |
| TACAATGGTGGTGGAGGTCA+CGG | 0.506705 | 5.2:-72149363 | MS.gene98858:CDS |
| TACAATGGTGGTGGAGGTCA+CGG | 0.506705 | 5.2:-72149405 | MS.gene98858:CDS |
| AGTGTTGTCCTCAGTTTGGT+CGG | 0.506970 | 5.2:+72149137 | None:intergenic |
| TTTCCTCAGTGATGTCCGCT+AGG | 0.509380 | 5.2:-72150133 | MS.gene98858:CDS |
| GTATCCACCACCACCGTTGT+GGG | 0.511667 | 5.2:+72149464 | None:intergenic |
| CATGGTGGTCACGGTGGACA+CGG | 0.515497 | 5.2:-72149162 | MS.gene98858:CDS |
| GGTTATAACCACGGTGGTGG+TGG | 0.518027 | 5.2:-72149627 | MS.gene98858:CDS |
| GGTTCCCACAACGGTGGTGG+TGG | 0.519632 | 5.2:-72149468 | MS.gene98858:CDS |
| AATAATTACAACGATGGTAG+AGG | 0.519969 | 5.2:-72149258 | MS.gene98858:CDS |
| CATGGTGGAGGTGGTTACAA+TGG | 0.522016 | 5.2:-72149378 | MS.gene98858:CDS |
| GGAGGTTATAACCACGGTGG+TGG | 0.533367 | 5.2:-72149630 | MS.gene98858:CDS |
| GGAGGTGGTCACGGTGGACA+CGG | 0.533640 | 5.2:-72149198 | MS.gene98858:CDS |
| GGTTCCCACAACGGTGGTGG+TGG | 0.538164 | 5.2:-72149507 | MS.gene98858:CDS |
| GGTTCCCACAACGGTGGTGG+TGG | 0.538164 | 5.2:-72149546 | MS.gene98858:CDS |
| GGTTCCCACAACGGTGGTGG+TGG | 0.538164 | 5.2:-72149585 | MS.gene98858:CDS |
| TTCCTCAGTGATGTCCGCTA+GGG | 0.540952 | 5.2:-72150132 | MS.gene98858:CDS |
| TGTATCCACCACCACCGTTG+TGG | 0.544285 | 5.2:+72149463 | None:intergenic |
| GGTTACAACCATGGTGGAGG+TGG | 0.550910 | 5.2:-72149429 | MS.gene98858:CDS |
| TGTAACCACCACCACCGTTG+TGG | 0.554711 | 5.2:+72149502 | None:intergenic |
| TGTAACCACCACCACCGTTG+TGG | 0.554711 | 5.2:+72149541 | None:intergenic |
| TGTAACCACCACCACCGTTG+TGG | 0.554711 | 5.2:+72149580 | None:intergenic |
| GGTGGTTACAACCATGGTGG+AGG | 0.556342 | 5.2:-72149432 | MS.gene98858:CDS |
| GGATACAACCACGGTGGAGG+TGG | 0.557091 | 5.2:-72149234 | MS.gene98858:CDS |
| GGTTACAACCACGGTGGAGG+TGG | 0.560417 | 5.2:-72149213 | MS.gene98858:CDS |
| GGTGGTTACAACCACGGTGG+AGG | 0.568751 | 5.2:-72149216 | MS.gene98858:CDS |
| GGTGGTTATAACCACGGTGG+TGG | 0.571829 | 5.2:-72149663 | MS.gene98858:CDS |
| AACGGTGGTGGTGGTTACAA+TGG | 0.578197 | 5.2:-72149498 | MS.gene98858:CDS |
| AACGGTGGTGGTGGTTACAA+TGG | 0.578197 | 5.2:-72149537 | MS.gene98858:CDS |
| AACGGTGGTGGTGGTTACAA+TGG | 0.578197 | 5.2:-72149576 | MS.gene98858:CDS |
| AACCACGGTGGAGGTGGTCA+CGG | 0.578947 | 5.2:-72149207 | MS.gene98858:CDS |
| AACGATGCCAAATATGGTGG+TGG | 0.582570 | 5.2:-72149681 | MS.gene98858:CDS |
| AATGATGCCAAATATGGAGA+TGG | 0.586210 | 5.2:-72149282 | MS.gene98858:CDS |
| GGAGGTCACGGTGGTCATGG+TGG | 0.586548 | 5.2:-72149393 | MS.gene98858:CDS |
| AACGGTGGTGGTGGATACAA+TGG | 0.590390 | 5.2:-72149459 | MS.gene98858:CDS |
| CTCACCCTTCTTAGCATCGG+TGG | 0.593869 | 5.2:+72150094 | None:intergenic |
| CATGGTGGAGGTGGTTACAA+TGG | 0.597788 | 5.2:-72149420 | MS.gene98858:CDS |
| AACCACGGTGGTGGTTACAA+TGG | 0.598930 | 5.2:-72149654 | MS.gene98858:CDS |
| TAGCTCACCCTTCTTAGCAT+CGG | 0.600224 | 5.2:+72150091 | None:intergenic |
| GGTGGTGGATACAATGGTGG+AGG | 0.601928 | 5.2:-72149453 | MS.gene98858:CDS |
| GGTGGATACAACCACGGTGG+AGG | 0.603384 | 5.2:-72149237 | MS.gene98858:CDS |
| AATTACAACGATGGTAGAGG+TGG | 0.603443 | 5.2:-72149255 | MS.gene98858:CDS |
| CACGGTGGTGGTTACAATGG+TGG | 0.608752 | 5.2:-72149651 | MS.gene98858:CDS |
| GGTGGTGGTTACAATGGTGG+AGG | 0.609082 | 5.2:-72149492 | MS.gene98858:CDS |
| GGTGGTGGTTACAATGGTGG+AGG | 0.609082 | 5.2:-72149531 | MS.gene98858:CDS |
| GGTGGTGGTTACAATGGTGG+AGG | 0.609082 | 5.2:-72149570 | MS.gene98858:CDS |
| GGTGGAGGTGGTTACAATGG+TGG | 0.613370 | 5.2:-72149375 | MS.gene98858:CDS |
| GGTGGAGGTGGTTACAATGG+TGG | 0.613370 | 5.2:-72149417 | MS.gene98858:CDS |
| GGTGGTGGTGGTTACCACAA+TGG | 0.615503 | 5.2:-72149615 | MS.gene98858:CDS |
| ACTTCCACCGATGCTAAGAA+GGG | 0.618699 | 5.2:-72150098 | MS.gene98858:intron |
| GGTGGTGGTTACAATGGTGG+AGG | 0.625782 | 5.2:-72149648 | MS.gene98858:CDS |
| GGTGGAGGTGGTTCCCACAA+CGG | 0.630975 | 5.2:-72149477 | MS.gene98858:CDS |
| GGTGGAGGTGGTTCCCACAA+CGG | 0.630975 | 5.2:-72149516 | MS.gene98858:CDS |
| GGTGGAGGTGGTTCCCACAA+CGG | 0.630975 | 5.2:-72149555 | MS.gene98858:CDS |
| GGTGGAGGTGGTTCCCACAA+CGG | 0.630975 | 5.2:-72149594 | MS.gene98858:CDS |
| ATCTGTTGCCGTGCAAACTG+AGG | 0.633170 | 5.2:-72149322 | MS.gene98858:CDS |
| GGTGGACATGGTGGCCATGG+TGG | 0.633718 | 5.2:-72149177 | MS.gene98858:CDS |
| GGAGGTCACGGTGGTCATGG+CGG | 0.640286 | 5.2:-72149351 | MS.gene98858:CDS |
| TAGCCAAGAGGCCTAGCATG+AGG | 0.641377 | 5.2:+72150165 | None:intergenic |
| GGAGGTGGTTCCCACAACGG+TGG | 0.642570 | 5.2:-72149474 | MS.gene98858:CDS |
| GGAGGTGGTTCCCACAACGG+TGG | 0.642570 | 5.2:-72149513 | MS.gene98858:CDS |
| GGAGGTGGTTCCCACAACGG+TGG | 0.642570 | 5.2:-72149552 | MS.gene98858:CDS |
| GGAGGTGGTTCCCACAACGG+TGG | 0.642570 | 5.2:-72149591 | MS.gene98858:CDS |
| GGGAACCACCTCCACCATTG+TGG | 0.643963 | 5.2:+72149601 | None:intergenic |
| GGTGGCCATGGTGGTCACGG+TGG | 0.648775 | 5.2:-72149168 | MS.gene98858:CDS |
| CATTGTAACCACCTCCACCA+TGG | 0.649002 | 5.2:+72149421 | None:intergenic |
| GATGGTAATAATTACAACGA+TGG | 0.650083 | 5.2:-72149264 | MS.gene98858:CDS |
| GGTGGACACGGTGGACATGG+TGG | 0.654274 | 5.2:-72149186 | MS.gene98858:CDS |
| CACGGTGGAGGTGGTCACGG+TGG | 0.660681 | 5.2:-72149204 | MS.gene98858:CDS |
| CGTGTCCACCGTGACCACCA+TGG | 0.663650 | 5.2:+72149163 | None:intergenic |
| GGTGGTCACGGTGGACACGG+TGG | 0.663754 | 5.2:-72149195 | MS.gene98858:CDS |
| GGTGGTGGTTACCACAATGG+TGG | 0.664489 | 5.2:-72149612 | MS.gene98858:CDS |
| TATGGTGGTGGTTATAACCA+CGG | 0.669028 | 5.2:-72149669 | MS.gene98858:CDS |
| GGTGGTGGTGGTTACAATGG+TGG | 0.671495 | 5.2:-72149495 | MS.gene98858:CDS |
| GGTGGTGGTGGTTACAATGG+TGG | 0.671495 | 5.2:-72149534 | MS.gene98858:CDS |
| GGTGGTGGTGGTTACAATGG+TGG | 0.671495 | 5.2:-72149573 | MS.gene98858:CDS |
| GGTGGAGGTGGTTACAACCA+TGG | 0.679817 | 5.2:-72149438 | MS.gene98858:CDS |
| GGTGGAGGTGGTTACAACCA+CGG | 0.683488 | 5.2:-72149222 | MS.gene98858:CDS |
| CACCGTGACCACCTCCACCG+TGG | 0.688584 | 5.2:+72149205 | None:intergenic |
| ACACGGTGCCGACCAAACTG+AGG | 0.694971 | 5.2:-72149145 | MS.gene98858:CDS |
| GGTGGTGGTGGATACAATGG+TGG | 0.695355 | 5.2:-72149456 | MS.gene98858:CDS |
| AAATAAGAGCCATAGCCAAG+AGG | 0.700367 | 5.2:+72150153 | None:intergenic |
| AATGGTGGTGGAGGTCACGG+TGG | 0.715780 | 5.2:-72149360 | MS.gene98858:CDS |
| AATGGTGGTGGAGGTCACGG+TGG | 0.715780 | 5.2:-72149402 | MS.gene98858:CDS |
| AATGGTGGAGGTTATAACCA+CGG | 0.716087 | 5.2:-72149636 | MS.gene98858:CDS |
| GGTTGTAACCACCTCCACCG+TGG | 0.717584 | 5.2:+72149226 | None:intergenic |
| AGTTTCAGTTAAGTCCCTAG+CGG | 0.722649 | 5.2:+72150118 | None:intergenic |
| GTCCCTAGCGGACATCACTG+AGG | 0.722830 | 5.2:+72150130 | None:intergenic |
| GGTAGAGGTGGATACAACCA+CGG | 0.725558 | 5.2:-72149243 | MS.gene98858:CDS |
| GTAAACGATGCCAAATATGG+TGG | 0.739461 | 5.2:-72149684 | MS.gene98858:CDS |
| CACCATTGTAACCACCACCG+TGG | 0.740555 | 5.2:+72149652 | None:intergenic |
| GGAGGTGGTTACAACCATGG+TGG | 0.740649 | 5.2:-72149435 | MS.gene98858:CDS |
| TGTGGTAACCACCACCACCG+TGG | 0.742556 | 5.2:+72149619 | None:intergenic |
| AGAGGTGGATACAACCACGG+TGG | 0.784418 | 5.2:-72149240 | MS.gene98858:CDS |
| GGAGGTGGTTACAACCACGG+TGG | 0.797028 | 5.2:-72149219 | MS.gene98858:CDS |
| GGTGGAGGTTATAACCACGG+TGG | 0.800098 | 5.2:-72149633 | MS.gene98858:CDS |
| GGTGGTGGTTATAACCACGG+TGG | 0.808173 | 5.2:-72149666 | MS.gene98858:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATCATTTTATATAACATTG+AGG | + | chr5.2:72149441-72149460 | None:intergenic | 15.0% |
| !!! | ATTTTTTTCTACTTATTTGA+AGG | - | chr5.2:72149329-72149348 | MS.gene98858:CDS | 15.0% |
| ! | ATTATTACCATCTCCATATT+TGG | + | chr5.2:72150041-72150060 | None:intergenic | 25.0% |
| AATAATTACAACGATGGTAG+AGG | - | chr5.2:72150055-72150074 | MS.gene98858:intron | 30.0% | |
| CATATATATTGTGTTTGCAG+AGG | - | chr5.2:72149586-72149605 | MS.gene98858:CDS | 30.0% | |
| GAAGTAAATGATGCCAAATA+TGG | - | chr5.2:72150025-72150044 | MS.gene98858:intron | 30.0% | |
| GATGGTAATAATTACAACGA+TGG | - | chr5.2:72150049-72150068 | MS.gene98858:intron | 30.0% | |
| AATGATGCCAAATATGGAGA+TGG | - | chr5.2:72150031-72150050 | MS.gene98858:intron | 35.0% | |
| GAAGTAAACGATGCCAAATA+TGG | - | chr5.2:72149626-72149645 | MS.gene98858:CDS | 35.0% | |
| GTTATAACCACCACCATATT+TGG | + | chr5.2:72149642-72149661 | None:intergenic | 35.0% | |
| AAAAAGGCAATCCTCATGCT+AGG | - | chr5.2:72149137-72149156 | MS.gene98858:CDS | 40.0% | |
| AAATAAGAGCCATAGCCAAG+AGG | + | chr5.2:72149163-72149182 | None:intergenic | 40.0% | |
| AATTACAACGATGGTAGAGG+TGG | - | chr5.2:72150058-72150077 | MS.gene98858:intron | 40.0% | |
| AGTTTCAGTTAAGTCCCTAG+CGG | + | chr5.2:72149198-72149217 | None:intergenic | 40.0% | |
| GTAAACGATGCCAAATATGG+TGG | - | chr5.2:72149629-72149648 | MS.gene98858:CDS | 40.0% | |
| ! | AATGGTGGAGGTTATAACCA+CGG | - | chr5.2:72149677-72149696 | MS.gene98858:CDS | 40.0% |
| ! | AGTCTTTTCCTCAGTTTGCA+CGG | + | chr5.2:72150002-72150021 | None:intergenic | 40.0% |
| ! | TTTGAGTGTTGTCCTCAGTT+TGG | + | chr5.2:72150183-72150202 | None:intergenic | 40.0% |
| !! | TATGGTGGTGGTTATAACCA+CGG | - | chr5.2:72149644-72149663 | MS.gene98858:CDS | 40.0% |
| AACGATGCCAAATATGGTGG+TGG | - | chr5.2:72149632-72149651 | MS.gene98858:CDS | 45.0% | |
| AACTTCCACCGATGCTAAGA+AGG | - | chr5.2:72149214-72149233 | MS.gene98858:CDS | 45.0% | |
| ACTTCCACCGATGCTAAGAA+GGG | - | chr5.2:72149215-72149234 | MS.gene98858:CDS | 45.0% | |
| AGTGTTGTCCTCAGTTTGGT+CGG | + | chr5.2:72150179-72150198 | None:intergenic | 45.0% | |
| TAGCTCACCCTTCTTAGCAT+CGG | + | chr5.2:72149225-72149244 | None:intergenic | 45.0% | |
| AATCCTCATGCTAGGCCTCT+TGG | - | chr5.2:72149145-72149164 | MS.gene98858:CDS | 50.0% | |
| ATCTGTTGCCGTGCAAACTG+AGG | - | chr5.2:72149991-72150010 | MS.gene98858:intron | 50.0% | |
| CATTGTAACCACCTCCACCA+TGG | + | chr5.2:72149895-72149914 | None:intergenic | 50.0% | |
| GGTAGAGGTGGATACAACCA+CGG | - | chr5.2:72150070-72150089 | MS.gene98858:intron | 50.0% | |
| TTCCTCAGTGATGTCCGCTA+GGG | - | chr5.2:72149181-72149200 | MS.gene98858:CDS | 50.0% | |
| TTTCCTCAGTGATGTCCGCT+AGG | - | chr5.2:72149180-72149199 | MS.gene98858:CDS | 50.0% | |
| ! | AACCACGGTGGTGGTTACAA+TGG | - | chr5.2:72149659-72149678 | MS.gene98858:CDS | 50.0% |
| ! | CATGGTGGAGGTGGTTACAA+TGG | - | chr5.2:72149893-72149912 | MS.gene98858:intron | 50.0% |
| !! | AACGGTGGTGGTGGATACAA+TGG | - | chr5.2:72149854-72149873 | MS.gene98858:intron | 50.0% |
| !! | AACGGTGGTGGTGGTTACAA+TGG | - | chr5.2:72149737-72149756 | MS.gene98858:intron | 50.0% |
| !! | TACAATGGTGGTGGAGGTCA+CGG | - | chr5.2:72149908-72149927 | MS.gene98858:intron | 50.0% |
| AGAGGTGGATACAACCACGG+TGG | - | chr5.2:72150073-72150092 | MS.gene98858:intron | 55.0% | |
| CACCATTGTAACCACCACCG+TGG | + | chr5.2:72149664-72149683 | None:intergenic | 55.0% | |
| CATGCTAGGCCTCTTGGCTA+TGG | - | chr5.2:72149151-72149170 | MS.gene98858:CDS | 55.0% | |
| GGAGGTGGTTACAACCATGG+TGG | - | chr5.2:72149878-72149897 | MS.gene98858:intron | 55.0% | |
| GGAGGTGGTTACAATGGTGG+TGG | - | chr5.2:72149899-72149918 | MS.gene98858:intron | 55.0% | |
| GGAGGTTATAACCACGGTGG+TGG | - | chr5.2:72149683-72149702 | MS.gene98858:CDS | 55.0% | |
| GGTGGAGGTGGTTACAACCA+CGG | - | chr5.2:72149875-72149894 | MS.gene98858:intron | 55.0% | |
| GGTGGAGGTGGTTACAACCA+TGG | - | chr5.2:72149875-72149894 | MS.gene98858:intron | 55.0% | |
| GGTGGAGGTGGTTACAATGG+TGG | - | chr5.2:72149896-72149915 | MS.gene98858:intron | 55.0% | |
| GGTGGAGGTTATAACCACGG+TGG | - | chr5.2:72149680-72149699 | MS.gene98858:CDS | 55.0% | |
| GGTGGTTACAACCATGGTGG+AGG | - | chr5.2:72149881-72149900 | MS.gene98858:intron | 55.0% | |
| GGTGGTTACCACAATGGTGG+AGG | - | chr5.2:72149704-72149723 | MS.gene98858:CDS | 55.0% | |
| GGTGGTTATAACCACGGTGG+TGG | - | chr5.2:72149650-72149669 | MS.gene98858:CDS | 55.0% | |
| GTAACCACCACCACCGTTGT+GGG | + | chr5.2:72149735-72149754 | None:intergenic | 55.0% | |
| GTATCCACCACCACCGTTGT+GGG | + | chr5.2:72149852-72149871 | None:intergenic | 55.0% | |
| TAGCCAAGAGGCCTAGCATG+AGG | + | chr5.2:72149151-72149170 | None:intergenic | 55.0% | |
| TGTAACCACCACCACCGTTG+TGG | + | chr5.2:72149736-72149755 | None:intergenic | 55.0% | |
| TGTATCCACCACCACCGTTG+TGG | + | chr5.2:72149853-72149872 | None:intergenic | 55.0% | |
| ! | CACGGTGGTGGTTACAATGG+TGG | - | chr5.2:72149662-72149681 | MS.gene98858:CDS | 55.0% |
| ! | CTCACCCTTCTTAGCATCGG+TGG | + | chr5.2:72149222-72149241 | None:intergenic | 55.0% |
| ! | GGTGGATACAATGGTGGAGG+TGG | - | chr5.2:72149863-72149882 | MS.gene98858:intron | 55.0% |
| ! | GGTGGTGGTTACAATGGTGG+AGG | - | chr5.2:72149665-72149684 | MS.gene98858:CDS | 55.0% |
| ! | GGTGGTGGTTACCACAATGG+TGG | - | chr5.2:72149701-72149720 | MS.gene98858:CDS | 55.0% |
| ! | GGTGGTGGTTATAACCACGG+TGG | - | chr5.2:72149647-72149666 | MS.gene98858:CDS | 55.0% |
| ! | GGTGGTTACAATGGTGGAGG+TGG | - | chr5.2:72149668-72149687 | MS.gene98858:CDS | 55.0% |
| ! | GGTTACAACCATGGTGGAGG+TGG | - | chr5.2:72149884-72149903 | MS.gene98858:intron | 55.0% |
| ! | GGTTACCACAATGGTGGAGG+TGG | - | chr5.2:72149707-72149726 | MS.gene98858:CDS | 55.0% |
| ! | GGTTATAACCACGGTGGTGG+TGG | - | chr5.2:72149653-72149672 | MS.gene98858:CDS | 55.0% |
| !! | GGTGGTGGATACAATGGTGG+AGG | - | chr5.2:72149860-72149879 | MS.gene98858:intron | 55.0% |
| !! | GGTGGTGGTGGATACAATGG+TGG | - | chr5.2:72149857-72149876 | MS.gene98858:intron | 55.0% |
| !! | GGTGGTGGTGGTTACAATGG+TGG | - | chr5.2:72149740-72149759 | MS.gene98858:intron | 55.0% |
| !! | GGTGGTGGTGGTTACCACAA+TGG | - | chr5.2:72149698-72149717 | MS.gene98858:CDS | 55.0% |
| !! | GGTGGTTACAATGGTGGTGG+AGG | - | chr5.2:72149902-72149921 | MS.gene98858:intron | 55.0% |
| AACCACGGTGGAGGTGGTCA+CGG | - | chr5.2:72150106-72150125 | MS.gene98858:CDS | 60.0% | |
| CATGGTGGCCATGGTGGTCA+CGG | - | chr5.2:72150142-72150161 | MS.gene98858:CDS | 60.0% | |
| CATGGTGGTCACGGTGGACA+CGG | - | chr5.2:72150151-72150170 | MS.gene98858:CDS | 60.0% | |
| GGAGGTGGTTACAACCACGG+TGG | - | chr5.2:72150094-72150113 | MS.gene98858:intron | 60.0% | |
| GGATACAACCACGGTGGAGG+TGG | - | chr5.2:72150079-72150098 | MS.gene98858:intron | 60.0% | |
| GGGAACCACCTCCACCATTG+TGG | + | chr5.2:72149715-72149734 | None:intergenic | 60.0% | |
| GGTGGAGGTGGTTCCCACAA+CGG | - | chr5.2:72149719-72149738 | MS.gene98858:intron | 60.0% | |
| GGTGGATACAACCACGGTGG+AGG | - | chr5.2:72150076-72150095 | MS.gene98858:intron | 60.0% | |
| GGTGGTTACAACCACGGTGG+AGG | - | chr5.2:72150097-72150116 | MS.gene98858:intron | 60.0% | |
| GGTTACAACCACGGTGGAGG+TGG | - | chr5.2:72150100-72150119 | MS.gene98858:CDS | 60.0% | |
| GGTTGTAACCACCTCCACCG+TGG | + | chr5.2:72150090-72150109 | None:intergenic | 60.0% | |
| TGTGGTAACCACCACCACCG+TGG | + | chr5.2:72149697-72149716 | None:intergenic | 60.0% | |
| ! | GTCCCTAGCGGACATCACTG+AGG | + | chr5.2:72149186-72149205 | None:intergenic | 60.0% |
| !! | AATGGTGGTGGAGGTCACGG+TGG | - | chr5.2:72149911-72149930 | MS.gene98858:intron | 60.0% |
| !! | ACACGGTGCCGACCAAACTG+AGG | - | chr5.2:72150168-72150187 | MS.gene98858:CDS | 60.0% |
| CACGGTGGACACGGTGGACA+TGG | - | chr5.2:72150124-72150143 | MS.gene98858:CDS | 65.0% | |
| CACGGTGGACATGGTGGCCA+TGG | - | chr5.2:72150133-72150152 | MS.gene98858:CDS | 65.0% | |
| CGTGTCCACCGTGACCACCA+TGG | + | chr5.2:72150153-72150172 | None:intergenic | 65.0% | |
| GGAGGTCACGGTGGTCATGG+CGG | - | chr5.2:72149920-72149939 | MS.gene98858:intron | 65.0% | |
| GGAGGTCACGGTGGTCATGG+TGG | - | chr5.2:72149920-72149939 | MS.gene98858:intron | 65.0% | |
| GGAGGTGGTCACGGTGGACA+CGG | - | chr5.2:72150115-72150134 | MS.gene98858:CDS | 65.0% | |
| GGAGGTGGTTCCCACAACGG+TGG | - | chr5.2:72149722-72149741 | MS.gene98858:intron | 65.0% | |
| GGTCACGGTGGTCATGGTGG+AGG | - | chr5.2:72149923-72149942 | MS.gene98858:intron | 65.0% | |
| GGTGGACACGGTGGACATGG+TGG | - | chr5.2:72150127-72150146 | MS.gene98858:CDS | 65.0% | |
| GGTGGACATGGTGGCCATGG+TGG | - | chr5.2:72150136-72150155 | MS.gene98858:CDS | 65.0% | |
| GGTGGAGGTCACGGTGGTCA+TGG | - | chr5.2:72149917-72149936 | MS.gene98858:intron | 65.0% | |
| GGTGGTTCCCACAACGGTGG+TGG | - | chr5.2:72149725-72149744 | MS.gene98858:intron | 65.0% | |
| ! | CACGGTGGTCATGGTGGAGG+TGG | - | chr5.2:72149926-72149945 | MS.gene98858:intron | 65.0% |
| ! | GGTTCCCACAACGGTGGTGG+TGG | - | chr5.2:72149728-72149747 | MS.gene98858:intron | 65.0% |
| CACCGTGACCACCTCCACCG+TGG | + | chr5.2:72150111-72150130 | None:intergenic | 70.0% | |
| CACGGTGGAGGTGGTCACGG+TGG | - | chr5.2:72150109-72150128 | MS.gene98858:CDS | 70.0% | |
| GGTGGCCATGGTGGTCACGG+TGG | - | chr5.2:72150145-72150164 | MS.gene98858:CDS | 70.0% | |
| GGTGGTCACGGTGGACACGG+TGG | - | chr5.2:72150118-72150137 | MS.gene98858:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 72149128 | 72150207 | 72149128 | ID=MS.gene98858 |
| chr5.2 | mRNA | 72149128 | 72150207 | 72149128 | ID=MS.gene98858.t1;Parent=MS.gene98858 |
| chr5.2 | exon | 72150099 | 72150207 | 72150099 | ID=MS.gene98858.t1.exon1;Parent=MS.gene98858.t1 |
| chr5.2 | CDS | 72150099 | 72150207 | 72150099 | ID=cds.MS.gene98858.t1;Parent=MS.gene98858.t1 |
| chr5.2 | exon | 72149128 | 72149729 | 72149128 | ID=MS.gene98858.t1.exon2;Parent=MS.gene98858.t1 |
| chr5.2 | CDS | 72149128 | 72149729 | 72149128 | ID=cds.MS.gene98858.t1;Parent=MS.gene98858.t1 |
| Gene Sequence |
| Protein sequence |
