AlfalfaGEDB | MS.gene99411

M. sativa cultivar XinJiangDaYe / MS.gene99411

KEGG: K10523
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF00651.34

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene99411.t1	XP_003617061.1	99	407	4	0	1	407	1	407	2.70E-218	767.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene99411.t1	Q9SRV1	72.7	377	101	2	30	404	45	421	6.0e-158	558.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene99411.t1	G7KHG8	99.0	407	4	0	1	407	1	407	2.0e-218	767.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050945	MS.gene99411	0.807099	5.96E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene99411.t1	MTR_5g087500	99.017	407	4	0	1	407	1	407	0.0	841
MS.gene99411.t1	MTR_5g087500	98.559	347	5	0	1	347	1	347	0.0	713
MS.gene99411.t1	MTR_5g087500	98.559	347	5	0	1	347	1	347	0.0	712
MS.gene99411.t1	MTR_7g086500	72.441	381	104	1	26	406	13	392	0.0	549
MS.gene99411.t1	MTR_7g086500	74.375	320	82	0	26	345	13	332	6.64e-172	484
MS.gene99411.t1	MTR_7g094490	58.901	382	144	6	30	406	36	409	1.35e-158	453
MS.gene99411.t1	MTR_1g072650	58.005	381	147	6	31	406	41	413	3.17e-152	437
MS.gene99411.t1	MTR_4g009630	76.374	182	43	0	29	210	23	204	2.15e-100	303
MS.gene99411.t1	MTR_4g009630	76.374	182	43	0	29	210	23	204	3.94e-99	300
MS.gene99411.t1	MTR_3g069000	42.021	188	103	3	194	378	51	235	1.36e-41	148

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene99411.t1	AT3G03740	71.139	395	108	3	12	404	31	421	0.0	574
MS.gene99411.t1	AT5G21010	68.672	399	120	3	13	406	10	408	0.0	558
MS.gene99411.t1	AT3G43700	66.015	409	136	1	1	406	5	413	0.0	550
MS.gene99411.t1	AT3G43700	66.193	352	116	1	1	349	5	356	5.58e-174	490
MS.gene99411.t1	AT3G43700	66.954	348	112	1	1	345	5	352	3.18e-173	488
MS.gene99411.t1	AT3G06190	55.746	409	170	5	2	406	3	404	4.52e-157	449
MS.gene99411.t1	AT5G19000	56.430	381	155	5	30	406	32	405	6.00e-149	428
MS.gene99411.t1	AT5G19000	56.430	381	155	5	30	406	32	405	6.00e-149	428
MS.gene99411.t1	AT2G39760	54.615	390	169	5	21	406	14	399	3.80e-148	426
MS.gene99411.t1	AT5G19000	51.683	416	155	6	30	406	32	440	1.24e-141	411

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Find 96 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAAACAACCGCCATGAC+CGG	0.506651	5.1:+68955010	None:intergenic
AACGGCGCCGGTGACGGTGA+TGG	0.554496	5.1:-68955052	None:intergenic
AAGACAGTTGCTGGCTGTGA+GGG	0.511783	5.1:+68959320	MS.gene99411:CDS
AAGATCTCTGACTGTAGCCA+TGG	0.528447	5.1:-68959296	None:intergenic
ACATACGCAGAATTATCCTC+CGG	0.650784	5.1:-68955250	None:intergenic
ACATGAATAGAGTTAAGCTG+TGG	0.618655	5.1:-68956859	None:intergenic
AGATCTCTGACTGTAGCCAT+GGG	0.614943	5.1:-68959295	None:intergenic
AGATGATGCGTTTCCGGTCA+TGG	0.446701	5.1:-68955023	None:intergenic
AGATTCCCTTACAGAAGAGG+TGG	0.616072	5.1:+68957327	MS.gene99411:CDS
AGGGTGATAGTTGCAGTACA+GGG	0.557225	5.1:+68959339	MS.gene99411:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATCATGTTACACATTGC+AGG	-	chr5.1:68958680-68958699	None:intergenic	30.0%
AAAGTCCAAATTATCGAGAA+CGG	-	chr5.1:68958883-68958902	None:intergenic	30.0%
AACACCTATAGTAGAAAAGA+CGG	+	chr5.1:68955665-68955684	MS.gene99411:intron	30.0%
AATTCCGTAACTAGTTAGAT+TGG	-	chr5.1:68957890-68957909	None:intergenic	30.0%
ACATTTGCAAACTCAAAGAA+CGG	-	chr5.1:68956615-68956634	None:intergenic	30.0%
ACCATGAAAAGATGGTAAAA+GGG	-	chr5.1:68957129-68957148	None:intergenic	30.0%
ATAAGATGGTTCTTATGGTT+TGG	+	chr5.1:68959219-68959238	MS.gene99411:intron	30.0%
ATCCAGTAACTAAAATTCAC+AGG	-	chr5.1:68956413-68956432	None:intergenic	30.0%
CACGAGTAATGAAAAATACA+TGG	+	chr5.1:68958036-68958055	MS.gene99411:intron	30.0%
CATTACATAGGTGAATTAGA+AGG	+	chr5.1:68956078-68956097	MS.gene99411:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	68955025	68959439	68955025	ID=MS.gene99411
chr5.1	mRNA	68955025	68959439	68955025	ID=MS.gene99411.t1;Parent=MS.gene99411
chr5.1	exon	68955025	68955434	68955025	ID=MS.gene99411.t1.exon1;Parent=MS.gene99411.t1
chr5.1	CDS	68955025	68955434	68955025	ID=cds.MS.gene99411.t1;Parent=MS.gene99411.t1
chr5.1	exon	68956747	68957092	68956747	ID=MS.gene99411.t1.exon2;Parent=MS.gene99411.t1
chr5.1	CDS	68956747	68957092	68956747	ID=cds.MS.gene99411.t1;Parent=MS.gene99411.t1
chr5.1	exon	68957304	68957583	68957304	ID=MS.gene99411.t1.exon3;Parent=MS.gene99411.t1
chr5.1	CDS	68957304	68957583	68957304	ID=cds.MS.gene99411.t1;Parent=MS.gene99411.t1
chr5.1	exon	68959252	68959439	68959252	ID=MS.gene99411.t1.exon4;Parent=MS.gene99411.t1
chr5.1	CDS	68959252	68959439	68959252	ID=cds.MS.gene99411.t1;Parent=MS.gene99411.t1

Gene Sequence

>MS.gene99411

ATGACCGGAAACGCATCATCTCCGACACCATCACCGTCACCGGCGCCGTTATCCTCCCCAACGATCTCGCGCTCGATAACGCAAACGGTTAACGGTTCGCACAAATTCTTGATCCAAGGGTACTCGCTCGCGAAGGGAATGGGAGTTGGAAAACACATTGCGAGCGATGTTTTCACCGTCGGAGGGTATCAGTGGGCGATCTACTTCTATCCTGATGGGAAGAATCCGGAGGATAATTCTGCGTATGTTTCGGTTTTCATCGCGTTGGCGAGTGAAGGAACGGATGTGAGAGCGCTTTTTGAACTCACGCTTGTTGATCAGAGTGGTCAAGGGAAGCATAAGGTTCATAGCCATTTTGATCGCTCTCTTGAAAGTGGTCCTTATACCTTGAAATATAAGGGTAGCATGTGGTAGGGTTTTGATTATTTATTTCAAATTTTGATTGTTTTTGGTTTAATGTTGATGATAGTTTGGGAATTTTGTTGTTTGAATTTGATGTGAGTTTTGGGGTTTTTATGCATATGATGAAATGATGAACCAACACGAAAATAAGTTAAGCGTAACAGAGATGAAGATGTTGAAAACTAGACATGATAAGATAAAAATTTAAAGCATTAGAGAGAGAGGGAGAGACTTGGATAACACCTATAGTAGAAAAGACGGTGAAAACTATGTTTAGGCGGTTTAGTCATGTGGAGAGAAGACATGTGGATTCTGACCTAAGGAGAGTAGATCAGATGGAGGAAAGTCAAAACACCAGAGGAAGACCTAGAAAACCTGTAAGAGAAACTATAGATTAATGAGTAGGATATAAATATTGTATTTCATAAAACATTAGTTTGATCCATGTAGCCGACCCCACTTAGTAGGGTAAGGCTTGGTTGTTGTATGAAGTGATGAGCAGTTTAGTTTTTTTAGAGGATGAATGAACATTGTAGTTGTTCTTATTTAAAATATTTACTATATCTGTATTATTACTCCTTTAAAAGAATGTGGTTTATCTCTTTTTTTGGTTGAACGTGCTTGATTATTTTGCAATTTGCTTACCAAAAACATTACATAGGTGAATTAGAAGGATTTTTCTTAGTTATATGTGTATACCAAATATAACTTTATGGAGAATGCTAAACAATGCCCTCAAGGCAATGGTTAAACAATCAAAACAAGTAACTTTTTATTAAAAGAAGTGTAATTATTACTTAATCAAAAGTCAAAACTTATATTTTCGAGACAAATTTTCTATTTATAGATTCCTTAACCATTTCCTTGAGGGCACTAGTTAGCAAGGCCCTAACTTTATATCTATGGTGTATATGAAATATAACTATATAACCATATGATACATGAAGGCTTCATTGGCAAAAAGACTCTCTTTGTTGCCCTTTCCTGTGAATTTTAGTTACTGGATTAGTCTATGCAGTTGTGTGTGGGGATAACTTGGTTTACCAAAATATGCTTTATCATTTATATTGTTTTTTAAATCAAAGACAATGCATACGTTTTAAAAAATTGTGAAAGAGGTAAATTATCAATGATTAAAGTGGTATTCACAGTTATTTTACATCTGTCTCTGAGGGGTTTTGAACTCCGTTCTTTGAGTTTGCAAATGTCGAACTCTTTCCTCTGAGTTGTAACCTTGTGGACAAGGACAATGCATATTATAATGTACAATGTTGTGTCAAGATTTGTTAAAATGTTGATCTTGTTCATTTGTTTTTGTAGGGGTTACAAGCGTTTTTTCAGACGGACTTTGCTTGAAAGCTCTGATTTCCTCAAGAATGATTGCTTGAAAATCAACTGTACAGTTGGAGTTGTGGTTTCTGCTGTTGATTGCCCACAGCTTAACTCTATTCATGTCCCAGAATCTGACATTGGATCACACTTTGGTGCACTATTGGAGAATAATGAAGGTTCAGATGTTACTTTTGATGTGGCTGGGGAGAAGTTTCCTGGTCATAAGTTGGTGTTGGCCGCTAGATCTCCAGAATTTCGATCTAAATTTTTTGATGGCACGGATATGGACACACAGGAGATTGTTGTGACAGATTTAGAACCAAAGGTTTTTAAGGTAAAAACTATTTATTTCTTATTATTTTTTCTTCCCTTTTACCATCTTTTCATGGTAGTGTTAAGCACGGCTAGGATCTACTCTCTGTTATTATGTGTTTTTTTGCAGTTTTTTCTTGTTTAATTCTTCTTTTCTTGATAAGAAAAGATTTTATTTGGGGGAAGTACTGCTCGAGAGGATAGATGTCCTGATTTTCCGTTTACTTTTACAGGCCATGCTGCATTTTATCTACAGAGATTCCCTTACAGAAGAGGTGGACATGGTTTCATCAACAACATCTAGTGATTTTCCAGTTTCGGAGACATTGATAGCAAAATTGTTAGCTGCAGCAGACAAATATGGCTTGGAGAGGCTTAGACTGATGTGCGAGTCTCGTCTTTGCAAGGACATTGGTGTCAGTTCTGTAGCCAACATTTTGACCTTGGCTGACCATTGCCATGCCACAGAGTTAAAAGCTGTTTGCCTAAAATTTGCTTCTCAAAATCTAGCCGGTATACCTACTTACTAATCACTTGTTTTTGTCTGGTTTGCATGGGTAACTGTGCTAACAATTAACATTAACACTGATGTTTTACCTTACAACACTTGTTACTGAAAAGTGACAAAATATAAAAGAAAAATGCATTCAGCTACAAGCTTCCTCTGCTAGTTAAACAAAGTTGTTTGACATACACGAGTAGGTATGCAGCAGAAAATGTAGATTATATATATTCCAAAATAAATCTTACACGTTCCTAAAACATTAAGATGATTCATTATAACTTTACATTTTGGGGATCTTTGCTCTCGACTTGCCAATCTAACTAGTTACGGAATTAATGACATGGCTAATTCTATGGAGGGTTTGACCATAGGCCACCAGGGGTTTACTGTTTATGTTTCATATATGTCGGTCAAACGCAAACTAGTAGGAATAAGTGATAGTAGAGATGATGCCATTAAACACGAGTAATGAAAAATACATGGGAAGAAAAATTGAATTGACAACATTTATTTAGTATTTAATTTTGTGTCAAAGCGTTATTAGTGAACTGTATGCTGCCACCTGTTCAAAAAAGGAAGTTAAATCTTCAAAGCTTTTACTGGAACCGAAAGACCTTAGTTACTTATTACCATAACGATGCATTGCTGACTTGCTTTCTTAATTACCAAAAATGGAAAAAAAAAACATCTGACATTGGCAGCTGATGAAATTTAGTGTTACTGACCCTTCATGTGTTTCAAATGTTTTTATTTTGCTCTCTGATATGTGTTGTTCTCTTCCACTCTAATCATGTGAAATGCTGTTGGATGATTTTGTTTTCTTGTCCTTCCATTTTTTTTTTACTTTTTCAACCTGCTATGTAAAAGACCTTAGTTACTAGTATTTACTATAACAATGCATTGCTTACTCACTTTTCTATTTACCAAAAATGGAGATAATATTACTTTAGCAGCTGATGAAATTTTGTTTTACCTAGCCTTCATGTGTTCCAAATGTGTCCGTTTTTCTCTTCTAGTTTTTGTTCTCTTCCACTCTAATCACGTGAAATGTTGTTGAATGATTTTGTTGTCTTTATCCTTTAATTTTCTTTACTTTTTCAACCTGCAATGTGTAACATGATTTTGGATAAGACAGTATGACATCATTCGATCTATATAGTCAACCCTGCTTAGTGGGAAAAGGTTTTTGCTGTAGATTTTTTTTGACCTTCTTTGCATTTTGAAACATTTAGACCCATGTAAGCTCCTCCTTCCCTTCTCTTGTTATTTTCTTTCCACCACTTTCTTTTTTATTGATTGCTTTTCCGTTCTCGATAATTTGGACTTTTTTGTGCTTATATATTTCTATGTCAAGCATCACATGTGTTCTACATTTATTCAATTTATTCATGTACTTTCTGATGTCTATTATGTCACCTTAATAGTGAATACAAATGATTTTGTACATTGACATTCAATGAGGTCAGACCATTGTAGAGGCCTGCGGGTTTCTATCTGTTTTTCCCTTTTGTGTTGAAATTTTAGATATAGGTTGGTTGGCCATCTTTTGATCCTCTGTTCTAAATCCATGTTTAATCATGCATTATTAAAACTTTTGGACATAGAAAATTATTTTTGTCTACTTTGTACTATCCACATGCTTGATAAGATGGTTCTTATGGTTTGGACTTGTTCAGCTGTCATGAGGTCGGATGGATTCGAGTCCATGAAAGAAAAATGCCCATGGCTACAGTCAGAGATCTTGAAGACAGTTGCTGGCTGTGAGGGTGATAGTTGCAGTACAGGGGAAAAATCTCAGAGTGTGTGGGCCCAACTTTCAGATGGCGGTGACACAATTGGCAGGAGAGTCAGACAGAGACATTGA

Protein sequence

>MS.gene99411.t1

MTGNASSPTPSPSPAPLSSPTISRSITQTVNGSHKFLIQGYSLAKGMGVGKHIASDVFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALASEGTDVRALFELTLVDQSGQGKHKVHSHFDRSLESGPYTLKYKGSMWGYKRFFRRTLLESSDFLKNDCLKINCTVGVVVSAVDCPQLNSIHVPESDIGSHFGALLENNEGSDVTFDVAGEKFPGHKLVLAARSPEFRSKFFDGTDMDTQEIVVTDLEPKVFKAMLHFIYRDSLTEEVDMVSSTTSSDFPVSETLIAKLLAAADKYGLERLRLMCESRLCKDIGVSSVANILTLADHCHATELKAVCLKFASQNLAAVMRSDGFESMKEKCPWLQSEILKTVAGCEGDSCSTGEKSQSVWAQLSDGGDTIGRRVRQRH