Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99411.t1 | XP_003617061.1 | 99 | 407 | 4 | 0 | 1 | 407 | 1 | 407 | 2.70E-218 | 767.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99411.t1 | Q9SRV1 | 72.7 | 377 | 101 | 2 | 30 | 404 | 45 | 421 | 6.0e-158 | 558.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99411.t1 | G7KHG8 | 99.0 | 407 | 4 | 0 | 1 | 407 | 1 | 407 | 2.0e-218 | 767.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050945 | MS.gene99411 | 0.807099 | 5.96E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99411.t1 | MTR_5g087500 | 99.017 | 407 | 4 | 0 | 1 | 407 | 1 | 407 | 0.0 | 841 |
| MS.gene99411.t1 | MTR_5g087500 | 98.559 | 347 | 5 | 0 | 1 | 347 | 1 | 347 | 0.0 | 713 |
| MS.gene99411.t1 | MTR_5g087500 | 98.559 | 347 | 5 | 0 | 1 | 347 | 1 | 347 | 0.0 | 712 |
| MS.gene99411.t1 | MTR_7g086500 | 72.441 | 381 | 104 | 1 | 26 | 406 | 13 | 392 | 0.0 | 549 |
| MS.gene99411.t1 | MTR_7g086500 | 74.375 | 320 | 82 | 0 | 26 | 345 | 13 | 332 | 6.64e-172 | 484 |
| MS.gene99411.t1 | MTR_7g094490 | 58.901 | 382 | 144 | 6 | 30 | 406 | 36 | 409 | 1.35e-158 | 453 |
| MS.gene99411.t1 | MTR_1g072650 | 58.005 | 381 | 147 | 6 | 31 | 406 | 41 | 413 | 3.17e-152 | 437 |
| MS.gene99411.t1 | MTR_4g009630 | 76.374 | 182 | 43 | 0 | 29 | 210 | 23 | 204 | 2.15e-100 | 303 |
| MS.gene99411.t1 | MTR_4g009630 | 76.374 | 182 | 43 | 0 | 29 | 210 | 23 | 204 | 3.94e-99 | 300 |
| MS.gene99411.t1 | MTR_3g069000 | 42.021 | 188 | 103 | 3 | 194 | 378 | 51 | 235 | 1.36e-41 | 148 |
| MS.gene99411.t1 | MTR_5g005940 | 31.447 | 159 | 88 | 5 | 183 | 339 | 521 | 660 | 4.30e-14 | 74.7 |
| MS.gene99411.t1 | MTR_7g094900 | 28.022 | 182 | 100 | 6 | 183 | 362 | 530 | 682 | 5.30e-14 | 74.3 |
| MS.gene99411.t1 | MTR_7g094910 | 27.473 | 182 | 101 | 6 | 183 | 362 | 511 | 663 | 1.02e-13 | 73.6 |
| MS.gene99411.t1 | MTR_1g104870 | 30.818 | 159 | 89 | 5 | 183 | 339 | 524 | 663 | 2.14e-13 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99411.t1 | AT3G03740 | 71.139 | 395 | 108 | 3 | 12 | 404 | 31 | 421 | 0.0 | 574 |
| MS.gene99411.t1 | AT5G21010 | 68.672 | 399 | 120 | 3 | 13 | 406 | 10 | 408 | 0.0 | 558 |
| MS.gene99411.t1 | AT3G43700 | 66.015 | 409 | 136 | 1 | 1 | 406 | 5 | 413 | 0.0 | 550 |
| MS.gene99411.t1 | AT3G43700 | 66.193 | 352 | 116 | 1 | 1 | 349 | 5 | 356 | 5.58e-174 | 490 |
| MS.gene99411.t1 | AT3G43700 | 66.954 | 348 | 112 | 1 | 1 | 345 | 5 | 352 | 3.18e-173 | 488 |
| MS.gene99411.t1 | AT3G06190 | 55.746 | 409 | 170 | 5 | 2 | 406 | 3 | 404 | 4.52e-157 | 449 |
| MS.gene99411.t1 | AT5G19000 | 56.430 | 381 | 155 | 5 | 30 | 406 | 32 | 405 | 6.00e-149 | 428 |
| MS.gene99411.t1 | AT5G19000 | 56.430 | 381 | 155 | 5 | 30 | 406 | 32 | 405 | 6.00e-149 | 428 |
| MS.gene99411.t1 | AT2G39760 | 54.615 | 390 | 169 | 5 | 21 | 406 | 14 | 399 | 3.80e-148 | 426 |
| MS.gene99411.t1 | AT5G19000 | 51.683 | 416 | 155 | 6 | 30 | 406 | 32 | 440 | 1.24e-141 | 411 |
| MS.gene99411.t1 | AT3G06190 | 58.529 | 340 | 135 | 3 | 2 | 339 | 3 | 338 | 3.07e-140 | 404 |
| MS.gene99411.t1 | AT2G39760 | 57.453 | 322 | 133 | 2 | 21 | 341 | 14 | 332 | 3.51e-133 | 386 |
| MS.gene99411.t1 | AT2G39760 | 57.453 | 322 | 133 | 2 | 21 | 341 | 14 | 332 | 3.51e-133 | 386 |
| MS.gene99411.t1 | AT2G39760 | 57.453 | 322 | 133 | 2 | 21 | 341 | 14 | 332 | 5.79e-133 | 385 |
| MS.gene99411.t1 | AT3G06190 | 61.961 | 255 | 96 | 1 | 2 | 255 | 3 | 257 | 3.43e-109 | 323 |
| MS.gene99411.t1 | AT3G06190 | 61.961 | 255 | 96 | 1 | 2 | 255 | 3 | 257 | 3.68e-109 | 323 |
| MS.gene99411.t1 | AT3G06190 | 59.770 | 261 | 103 | 1 | 2 | 260 | 3 | 263 | 3.83e-108 | 320 |
| MS.gene99411.t1 | AT5G19330 | 31.088 | 193 | 105 | 7 | 195 | 385 | 535 | 701 | 2.58e-16 | 81.6 |
| MS.gene99411.t1 | AT5G13060 | 28.571 | 175 | 106 | 4 | 194 | 365 | 561 | 719 | 8.21e-13 | 70.9 |
| MS.gene99411.t1 | AT3G56230 | 28.834 | 163 | 101 | 4 | 209 | 369 | 121 | 270 | 5.14e-11 | 63.5 |
Find 96 sgRNAs with CRISPR-Local
Find 310 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTTATACCTTGAAATATA+AGG | 0.259361 | 5.1:+68955402 | MS.gene99411:CDS |
| CCCTTATATTTCAAGGTATA+AGG | 0.262839 | 5.1:-68955403 | None:intergenic |
| TGTCGGAGATGATGCGTTTC+CGG | 0.295840 | 5.1:-68955029 | None:intergenic |
| GCTATCAATGTCTCCGAAAC+TGG | 0.297355 | 5.1:-68957382 | None:intergenic |
| ATCACACTTTGGTGCACTAT+TGG | 0.301896 | 5.1:+68956900 | MS.gene99411:CDS |
| TGTGATCCAATGTCAGATTC+TGG | 0.306920 | 5.1:-68956883 | None:intergenic |
| GGATAATTCTGCGTATGTTT+CGG | 0.314889 | 5.1:+68955255 | MS.gene99411:CDS |
| TTAGCTGCAGCAGACAAATA+TGG | 0.341015 | 5.1:+68957412 | MS.gene99411:CDS |
| TTATCGAGCGCGAGATCGTT+GGG | 0.358029 | 5.1:-68955081 | None:intergenic |
| TACTCGCTCGCGAAGGGAAT+GGG | 0.383641 | 5.1:+68955145 | MS.gene99411:CDS |
| CATGCTACCCTTATATTTCA+AGG | 0.389146 | 5.1:-68955410 | None:intergenic |
| GAGATCTTGAAGACAGTTGC+TGG | 0.421772 | 5.1:+68959311 | MS.gene99411:CDS |
| TCGATAACGCAAACGGTTAA+CGG | 0.437798 | 5.1:+68955097 | MS.gene99411:CDS |
| TCAGATGGCGGTGACACAAT+TGG | 0.439482 | 5.1:+68959392 | MS.gene99411:CDS |
| AGATGATGCGTTTCCGGTCA+TGG | 0.446701 | 5.1:-68955023 | None:intergenic |
| GTGGCTGGGGAGAAGTTTCC+TGG | 0.449811 | 5.1:+68956955 | MS.gene99411:CDS |
| TTTCAAGAGAGCGATCAAAA+TGG | 0.451722 | 5.1:-68955375 | None:intergenic |
| CCATGTCCACCTCTTCTGTA+AGG | 0.453653 | 5.1:-68957333 | None:intergenic |
| CCTTATACCTTGAAATATAA+GGG | 0.454581 | 5.1:+68955403 | MS.gene99411:CDS |
| GTCACCGCCATCTGAAAGTT+GGG | 0.456305 | 5.1:-68959384 | None:intergenic |
| TCCTCCGGATTCTTCCCATC+AGG | 0.473218 | 5.1:-68955235 | None:intergenic |
| CCTTCGCGAGCGAGTACCCT+TGG | 0.474161 | 5.1:-68955138 | None:intergenic |
| GAGGGTGATAGTTGCAGTAC+AGG | 0.482747 | 5.1:+68959338 | MS.gene99411:CDS |
| TCCTGGTCATAAGTTGGTGT+TGG | 0.483144 | 5.1:+68956972 | MS.gene99411:CDS |
| GTGATCCAATGTCAGATTCT+GGG | 0.484115 | 5.1:-68956882 | None:intergenic |
| TGTCACCGCCATCTGAAAGT+TGG | 0.487643 | 5.1:-68959385 | None:intergenic |
| CTCGCGAAGGGAATGGGAGT+TGG | 0.488059 | 5.1:+68955151 | MS.gene99411:CDS |
| CTATCCTGATGGGAAGAATC+CGG | 0.493996 | 5.1:+68955231 | MS.gene99411:CDS |
| TTTGATCGCTCTCTTGAAAG+TGG | 0.498995 | 5.1:+68955379 | MS.gene99411:CDS |
| GTACTCGCTCGCGAAGGGAA+TGG | 0.499540 | 5.1:+68955144 | MS.gene99411:CDS |
| AAATAAACAACCGCCATGAC+CGG | 0.506651 | 5.1:+68955010 | None:intergenic |
| CAACTGTACAGTTGGAGTTG+TGG | 0.508711 | 5.1:+68956819 | MS.gene99411:CDS |
| TCGCACAAATTCTTGATCCA+AGG | 0.511740 | 5.1:+68955121 | MS.gene99411:CDS |
| AAGACAGTTGCTGGCTGTGA+GGG | 0.511783 | 5.1:+68959320 | MS.gene99411:CDS |
| GAGGATAACGGCGCCGGTGA+CGG | 0.513532 | 5.1:-68955058 | None:intergenic |
| TTGAAAATCAACTGTACAGT+TGG | 0.516183 | 5.1:+68956811 | MS.gene99411:CDS |
| GTTATCGAGCGCGAGATCGT+TGG | 0.516701 | 5.1:-68955082 | None:intergenic |
| TTCATCGCGTTGGCGAGTGA+AGG | 0.518184 | 5.1:+68955280 | MS.gene99411:CDS |
| GCGATCTACTTCTATCCTGA+TGG | 0.520478 | 5.1:+68955220 | MS.gene99411:CDS |
| AAGATCTCTGACTGTAGCCA+TGG | 0.528447 | 5.1:-68959296 | None:intergenic |
| TTAACTCTGTGGCATGGCAA+TGG | 0.529102 | 5.1:-68957522 | None:intergenic |
| CTTGTTGATCAGAGTGGTCA+AGG | 0.529294 | 5.1:+68955334 | MS.gene99411:CDS |
| GAGATCGTTGGGGAGGATAA+CGG | 0.531477 | 5.1:-68955070 | None:intergenic |
| CCTTACAGAAGAGGTGGACA+TGG | 0.531958 | 5.1:+68957333 | MS.gene99411:CDS |
| TCCGACACCATCACCGTCAC+CGG | 0.533301 | 5.1:+68955045 | MS.gene99411:CDS |
| TCTGACATTGGATCACACTT+TGG | 0.535953 | 5.1:+68956889 | MS.gene99411:CDS |
| GAAGTTTCCTGGTCATAAGT+TGG | 0.536194 | 5.1:+68956966 | MS.gene99411:CDS |
| CGCGTTGGCGAGTGAAGGAA+CGG | 0.541562 | 5.1:+68955285 | MS.gene99411:CDS |
| TGCAGCAGACAAATATGGCT+TGG | 0.543040 | 5.1:+68957417 | MS.gene99411:CDS |
| GCACTATTGGAGAATAATGA+AGG | 0.550810 | 5.1:+68956913 | MS.gene99411:CDS |
| AACGGCGCCGGTGACGGTGA+TGG | 0.554496 | 5.1:-68955052 | None:intergenic |
| TTTGCTTCTCAAAATCTAGC+CGG | 0.554738 | 5.1:+68957562 | MS.gene99411:CDS |
| CGCACAAATTCTTGATCCAA+GGG | 0.554858 | 5.1:+68955122 | MS.gene99411:CDS |
| AGGGTGATAGTTGCAGTACA+GGG | 0.557225 | 5.1:+68959339 | MS.gene99411:CDS |
| TCTCGTCTTTGCAAGGACAT+TGG | 0.559559 | 5.1:+68957463 | MS.gene99411:CDS |
| TCAGCTGTCATGAGGTCGGA+TGG | 0.563006 | 5.1:+68959248 | MS.gene99411:intron |
| TCACCGTCGGAGGGTATCAG+TGG | 0.564407 | 5.1:+68955197 | MS.gene99411:CDS |
| CTCGCGCTCGATAACGCAAA+CGG | 0.564722 | 5.1:+68955090 | MS.gene99411:CDS |
| CGATCTACTTCTATCCTGAT+GGG | 0.565146 | 5.1:+68955221 | MS.gene99411:CDS |
| GAGTGGTCAAGGGAAGCATA+AGG | 0.565593 | 5.1:+68955345 | MS.gene99411:CDS |
| GTCAGCCAAGGTCAAAATGT+TGG | 0.566131 | 5.1:-68957500 | None:intergenic |
| GCCGGTGACGGTGATGGTGT+CGG | 0.567480 | 5.1:-68955046 | None:intergenic |
| CAGAGATTCCCTTACAGAAG+AGG | 0.571846 | 5.1:+68957324 | MS.gene99411:CDS |
| GTTGGGGAGGATAACGGCGC+CGG | 0.572963 | 5.1:-68955064 | None:intergenic |
| ATGGCGGTGACACAATTGGC+AGG | 0.575721 | 5.1:+68959396 | MS.gene99411:CDS |
| TGTGACAGATTTAGAACCAA+AGG | 0.576907 | 5.1:+68957062 | MS.gene99411:CDS |
| GAAGACAGTTGCTGGCTGTG+AGG | 0.579653 | 5.1:+68959319 | MS.gene99411:CDS |
| GGACTTGTTCAGCTGTCATG+AGG | 0.582153 | 5.1:+68959240 | MS.gene99411:intron |
| CATGTCCACCTCTTCTGTAA+GGG | 0.584025 | 5.1:-68957332 | None:intergenic |
| CCAAGGGTACTCGCTCGCGA+AGG | 0.588173 | 5.1:+68955138 | MS.gene99411:CDS |
| CATGTCCCAGAATCTGACAT+TGG | 0.590035 | 5.1:+68956877 | MS.gene99411:CDS |
| GTGCGAGTCTCGTCTTTGCA+AGG | 0.590794 | 5.1:+68957456 | MS.gene99411:CDS |
| GCCAACACCAACTTATGACC+AGG | 0.592965 | 5.1:-68956973 | None:intergenic |
| GTGTGGGCCCAACTTTCAGA+TGG | 0.593993 | 5.1:+68959377 | MS.gene99411:CDS |
| TTGTTCAGCTGTCATGAGGT+CGG | 0.594507 | 5.1:+68959244 | MS.gene99411:intron |
| CAAGGGTACTCGCTCGCGAA+GGG | 0.597917 | 5.1:+68955139 | MS.gene99411:CDS |
| AGATCTCTGACTGTAGCCAT+GGG | 0.614943 | 5.1:-68959295 | None:intergenic |
| AGATTCCCTTACAGAAGAGG+TGG | 0.616072 | 5.1:+68957327 | MS.gene99411:CDS |
| ACATGAATAGAGTTAAGCTG+TGG | 0.618655 | 5.1:-68956859 | None:intergenic |
| CACCGTCGGAGGGTATCAGT+GGG | 0.619698 | 5.1:+68955198 | MS.gene99411:CDS |
| TCGAAATTCTGGAGATCTAG+CGG | 0.629987 | 5.1:-68956995 | None:intergenic |
| GGCATGGCAATGGTCAGCCA+AGG | 0.641941 | 5.1:-68957512 | None:intergenic |
| TTGTTGATCAGAGTGGTCAA+GGG | 0.647789 | 5.1:+68955335 | MS.gene99411:CDS |
| ACATACGCAGAATTATCCTC+CGG | 0.650784 | 5.1:-68955250 | None:intergenic |
| TCTGTAGATAAAATGCAGCA+TGG | 0.650987 | 5.1:-68957305 | None:intergenic |
| CGAGCGCGAGATCGTTGGGG+AGG | 0.656980 | 5.1:-68955077 | None:intergenic |
| CAGACAAATATGGCTTGGAG+AGG | 0.664817 | 5.1:+68957422 | MS.gene99411:CDS |
| CATGAATAGAGTTAAGCTGT+GGG | 0.672460 | 5.1:-68956858 | None:intergenic |
| CTCACGCTTGTTGATCAGAG+TGG | 0.674203 | 5.1:+68955328 | MS.gene99411:CDS |
| TATCGAGCGCGAGATCGTTG+GGG | 0.681767 | 5.1:-68955080 | None:intergenic |
| TGGCACGGATATGGACACAC+AGG | 0.686971 | 5.1:+68957032 | MS.gene99411:CDS |
| CGCCCACTGATACCCTCCGA+CGG | 0.690240 | 5.1:-68955200 | None:intergenic |
| TGGGCCCAACTTTCAGATGG+CGG | 0.690246 | 5.1:+68959380 | MS.gene99411:CDS |
| GGGTGATAGTTGCAGTACAG+GGG | 0.705570 | 5.1:+68959340 | MS.gene99411:CDS |
| TGAAATATAAGGGTAGCATG+TGG | 0.707701 | 5.1:+68955413 | MS.gene99411:CDS |
| TCCTGATGGGAAGAATCCGG+AGG | 0.709613 | 5.1:+68955234 | MS.gene99411:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGAAAAAGTAAAAAAAAAA+TGG | - | chr5.1:68958408-68958427 | None:intergenic | 10.0% |
| !! | AAAAGTAAAAAAAAAATGGA+AGG | - | chr5.1:68958404-68958423 | None:intergenic | 15.0% |
| !! | GAAAAAGTAAAGAAAATTAA+AGG | - | chr5.1:68958655-68958674 | None:intergenic | 15.0% |
| !! | TAAATTATCAATGATTAAAG+TGG | + | chr5.1:68956546-68956565 | MS.gene99411:intron | 15.0% |
| !!! | ATAAATGATAAAGCATATTT+TGG | - | chr5.1:68956473-68956492 | None:intergenic | 15.0% |
| !!! | ATAAGAAAAGATTTTATTTG+GGG | + | chr5.1:68957230-68957249 | MS.gene99411:intron | 15.0% |
| !!! | ATGTTTTTTTTTTCCATTTT+TGG | - | chr5.1:68958244-68958263 | None:intergenic | 15.0% |
| !!! | GATAAGAAAAGATTTTATTT+GGG | + | chr5.1:68957229-68957248 | MS.gene99411:intron | 15.0% |
| !!! | TCATTATAACTTTACATTTT+GGG | + | chr5.1:68957845-68957864 | MS.gene99411:intron | 15.0% |
| !!! | TGATAAGAAAAGATTTTATT+TGG | + | chr5.1:68957228-68957247 | MS.gene99411:intron | 15.0% |
| !!! | TTCATTATAACTTTACATTT+TGG | + | chr5.1:68957844-68957863 | MS.gene99411:intron | 15.0% |
| !!! | TTTCAAATTTTGATTGTTTT+TGG | + | chr5.1:68955454-68955473 | MS.gene99411:intron | 15.0% |
| !! | AAAAAAAAAACATCTGACAT+TGG | + | chr5.1:68958251-68958270 | MS.gene99411:intron | 20.0% |
| !! | AAAAATTTAGATCGAAATTC+TGG | - | chr5.1:68957009-68957028 | None:intergenic | 20.0% |
| !! | ATAGTAAATACTAGTAACTA+AGG | - | chr5.1:68958447-68958466 | None:intergenic | 20.0% |
| !! | ATCATTTGTATTCACTATTA+AGG | - | chr5.1:68958994-68959013 | None:intergenic | 20.0% |
| !! | ATTCTCCATAAAGTTATATT+TGG | - | chr5.1:68956128-68956147 | None:intergenic | 20.0% |
| !! | GTATACCAAATATAACTTTA+TGG | + | chr5.1:68956120-68956139 | MS.gene99411:intron | 20.0% |
| !! | TAATAATGCATGATTAAACA+TGG | - | chr5.1:68959144-68959163 | None:intergenic | 20.0% |
| !! | TGTTTATGTTTCATATATGT+CGG | + | chr5.1:68957963-68957982 | MS.gene99411:intron | 20.0% |
| !!! | ACTTTTCTATTTACCAAAAA+TGG | + | chr5.1:68958486-68958505 | MS.gene99411:intron | 20.0% |
| !!! | AGTAATATTATCTCCATTTT+TGG | - | chr5.1:68958502-68958521 | None:intergenic | 20.0% |
| !!! | ATCTAAAATTTCAACACAAA+AGG | - | chr5.1:68959082-68959101 | None:intergenic | 20.0% |
| !!! | ATGAATCATCTTAATGTTTT+AGG | - | chr5.1:68957829-68957848 | None:intergenic | 20.0% |
| !!! | CATTATAACTTTACATTTTG+GGG | + | chr5.1:68957846-68957865 | MS.gene99411:intron | 20.0% |
| !!! | GTTTTAAAAAATTGTGAAAG+AGG | + | chr5.1:68956523-68956542 | MS.gene99411:intron | 20.0% |
| !!! | TAAGAAAAGATTTTATTTGG+GGG | + | chr5.1:68957231-68957250 | MS.gene99411:intron | 20.0% |
| !!! | TCATGCATTATTAAAACTTT+TGG | + | chr5.1:68959151-68959170 | MS.gene99411:intron | 20.0% |
| !!! | TCTAAAATTTCAACACAAAA+GGG | - | chr5.1:68959081-68959100 | None:intergenic | 20.0% |
| !!! | TGTGTTGAAATTTTAGATAT+AGG | + | chr5.1:68959084-68959103 | MS.gene99411:intron | 20.0% |
| !!! | TTGAAATTTTAGATATAGGT+TGG | + | chr5.1:68959088-68959107 | MS.gene99411:intron | 20.0% |
| !!! | TTTAATGTTGATGATAGTTT+GGG | + | chr5.1:68955477-68955496 | MS.gene99411:intron | 20.0% |
| !!! | TTTCGATCTAAATTTTTTGA+TGG | + | chr5.1:68957012-68957031 | MS.gene99411:CDS | 20.0% |
| ! | AAAACAAGTGATTAGTAAGT+AGG | - | chr5.1:68957592-68957611 | None:intergenic | 25.0% |
| ! | AATAAGTAACTAAGGTCTTT+CGG | - | chr5.1:68958184-68958203 | None:intergenic | 25.0% |
| ! | AATGTTTCAAAATGCAAAGA+AGG | - | chr5.1:68958785-68958804 | None:intergenic | 25.0% |
| ! | ACACCATAGATATAAAGTTA+GGG | - | chr5.1:68956316-68956335 | None:intergenic | 25.0% |
| ! | ACGAGTAATGAAAAATACAT+GGG | + | chr5.1:68958037-68958056 | MS.gene99411:intron | 25.0% |
| ! | ATCAATAAAAAAGAAAGTGG+TGG | - | chr5.1:68958853-68958872 | None:intergenic | 25.0% |
| ! | CAAAAACTAGAAGAGAAAAA+CGG | - | chr5.1:68958578-68958597 | None:intergenic | 25.0% |
| ! | CCTTATACCTTGAAATATAA+GGG | + | chr5.1:68955403-68955422 | MS.gene99411:CDS | 25.0% |
| ! | GAAACTATAGATTAATGAGT+AGG | + | chr5.1:68955810-68955829 | MS.gene99411:intron | 25.0% |
| ! | GAAAGAAAATAACAAGAGAA+GGG | - | chr5.1:68958831-68958850 | None:intergenic | 25.0% |
| ! | GCAATCAATAAAAAAGAAAG+TGG | - | chr5.1:68958856-68958875 | None:intergenic | 25.0% |
| ! | GCTTTCTTAATTACCAAAAA+TGG | + | chr5.1:68958228-68958247 | MS.gene99411:intron | 25.0% |
| ! | GTTATGGTAATAAGTAACTA+AGG | - | chr5.1:68958192-68958211 | None:intergenic | 25.0% |
| ! | TAACTAAAATTCACAGGAAA+GGG | - | chr5.1:68956407-68956426 | None:intergenic | 25.0% |
| ! | TAATCTATAGTTTCTCTTAC+AGG | - | chr5.1:68955804-68955823 | None:intergenic | 25.0% |
| ! | TACACCATAGATATAAAGTT+AGG | - | chr5.1:68956317-68956336 | None:intergenic | 25.0% |
| ! | TATAACCATATGATACATGA+AGG | + | chr5.1:68956352-68956371 | MS.gene99411:intron | 25.0% |
| ! | TCCTTATACCTTGAAATATA+AGG | + | chr5.1:68955402-68955421 | MS.gene99411:CDS | 25.0% |
| !! | AAAACATTTGAAACACATGA+AGG | - | chr5.1:68958304-68958323 | None:intergenic | 25.0% |
| !! | AAACATTTGAAACACATGAA+GGG | - | chr5.1:68958303-68958322 | None:intergenic | 25.0% |
| !! | ATTACTCCTTTAAAAGAATG+TGG | + | chr5.1:68955998-68956017 | MS.gene99411:intron | 25.0% |
| !! | ATTCACCTATGTAATGTTTT+TGG | - | chr5.1:68956074-68956093 | None:intergenic | 25.0% |
| !! | GATAAACCACATTCTTTTAA+AGG | - | chr5.1:68956007-68956026 | None:intergenic | 25.0% |
| !! | GTTTTTACCTTAAAAACCTT+TGG | - | chr5.1:68957081-68957100 | None:intergenic | 25.0% |
| !! | TAAATCTTCAAAGCTTTTAC+TGG | + | chr5.1:68958156-68958175 | MS.gene99411:intron | 25.0% |
| !! | TTGAATTTGATGTGAGTTTT+GGG | + | chr5.1:68955511-68955530 | MS.gene99411:intron | 25.0% |
| !! | TTTGAATTTGATGTGAGTTT+TGG | + | chr5.1:68955510-68955529 | MS.gene99411:intron | 25.0% |
| !! | TTTTCATTACTCGTGTTTAA+TGG | - | chr5.1:68958031-68958050 | None:intergenic | 25.0% |
| !!! | AATTTTAGATATAGGTTGGT+TGG | + | chr5.1:68959092-68959111 | MS.gene99411:intron | 25.0% |
| !!! | ATCTAAATTTTTTGATGGCA+CGG | + | chr5.1:68957017-68957036 | MS.gene99411:CDS | 25.0% |
| !!! | ATGTGGTTTATCTCTTTTTT+TGG | + | chr5.1:68956015-68956034 | MS.gene99411:intron | 25.0% |
| !!! | CTTGTTCATTTGTTTTTGTA+GGG | + | chr5.1:68956726-68956745 | MS.gene99411:intron | 25.0% |
| !!! | GATTTTGAGAAGCAAATTTT+AGG | - | chr5.1:68957558-68957577 | None:intergenic | 25.0% |
| !!! | GTTTAATGTTGATGATAGTT+TGG | + | chr5.1:68955476-68955495 | MS.gene99411:intron | 25.0% |
| !!! | TCTTGTTCATTTGTTTTTGT+AGG | + | chr5.1:68956725-68956744 | MS.gene99411:intron | 25.0% |
| !!! | TTGTTCATTTGTTTTTGTAG+GGG | + | chr5.1:68956727-68956746 | MS.gene99411:intron | 25.0% |
| !!! | TTTAACTTCCTTTTTTGAAC+AGG | - | chr5.1:68958140-68958159 | None:intergenic | 25.0% |
| !!! | TTTAGAACCAAAGGTTTTTA+AGG | + | chr5.1:68957071-68957090 | MS.gene99411:CDS | 25.0% |
| AAAATCATGTTACACATTGC+AGG | - | chr5.1:68958680-68958699 | None:intergenic | 30.0% | |
| AAAGTCCAAATTATCGAGAA+CGG | - | chr5.1:68958883-68958902 | None:intergenic | 30.0% | |
| AACACCTATAGTAGAAAAGA+CGG | + | chr5.1:68955665-68955684 | MS.gene99411:intron | 30.0% | |
| AATTCCGTAACTAGTTAGAT+TGG | - | chr5.1:68957890-68957909 | None:intergenic | 30.0% | |
| ACATTTGCAAACTCAAAGAA+CGG | - | chr5.1:68956615-68956634 | None:intergenic | 30.0% | |
| ACCATGAAAAGATGGTAAAA+GGG | - | chr5.1:68957129-68957148 | None:intergenic | 30.0% | |
| ATAAGATGGTTCTTATGGTT+TGG | + | chr5.1:68959219-68959238 | MS.gene99411:intron | 30.0% | |
| ATCCAGTAACTAAAATTCAC+AGG | - | chr5.1:68956413-68956432 | None:intergenic | 30.0% | |
| CACGAGTAATGAAAAATACA+TGG | + | chr5.1:68958036-68958055 | MS.gene99411:intron | 30.0% | |
| CATTACATAGGTGAATTAGA+AGG | + | chr5.1:68956078-68956097 | MS.gene99411:intron | 30.0% | |
| CCCTTATATTTCAAGGTATA+AGG | - | chr5.1:68955406-68955425 | None:intergenic | 30.0% | |
| GCTTACCAAAAACATTACAT+AGG | + | chr5.1:68956066-68956085 | MS.gene99411:intron | 30.0% | |
| GGAAAGAAAATAACAAGAGA+AGG | - | chr5.1:68958832-68958851 | None:intergenic | 30.0% | |
| GTAAAAGTAAACGGAAAATC+AGG | - | chr5.1:68957282-68957301 | None:intergenic | 30.0% | |
| GTAACTAAAATTCACAGGAA+AGG | - | chr5.1:68956408-68956427 | None:intergenic | 30.0% | |
| TAATGACATGGCTAATTCTA+TGG | + | chr5.1:68957909-68957928 | MS.gene99411:intron | 30.0% | |
| TACCATGAAAAGATGGTAAA+AGG | - | chr5.1:68957130-68957149 | None:intergenic | 30.0% | |
| TAGTTACGGAATTAATGACA+TGG | + | chr5.1:68957897-68957916 | MS.gene99411:intron | 30.0% | |
| TGATTAGTAAGTAGGTATAC+CGG | - | chr5.1:68957584-68957603 | None:intergenic | 30.0% | |
| TTAACACTACCATGAAAAGA+TGG | - | chr5.1:68957137-68957156 | None:intergenic | 30.0% | |
| TTGAAAATCAACTGTACAGT+TGG | + | chr5.1:68956811-68956830 | MS.gene99411:CDS | 30.0% | |
| ! | ATCTAGTGATTTTCCAGTTT+CGG | + | chr5.1:68957369-68957388 | MS.gene99411:CDS | 30.0% |
| ! | ATTTAAAGCATTAGAGAGAG+AGG | + | chr5.1:68955629-68955648 | MS.gene99411:intron | 30.0% |
| ! | GGAACGTGTAAGATTTATTT+TGG | - | chr5.1:68957808-68957827 | None:intergenic | 30.0% |
| ! | TAAACATGGATTTAGAACAG+AGG | - | chr5.1:68959130-68959149 | None:intergenic | 30.0% |
| ! | TATTTTACATCTGTCTCTGA+GGG | + | chr5.1:68956579-68956598 | MS.gene99411:intron | 30.0% |
| ! | TGAATTTGATGTGAGTTTTG+GGG | + | chr5.1:68955512-68955531 | MS.gene99411:intron | 30.0% |
| ! | TGCAATGTGTAACATGATTT+TGG | + | chr5.1:68958679-68958698 | MS.gene99411:intron | 30.0% |
| ! | TTTAAAGCATTAGAGAGAGA+GGG | + | chr5.1:68955630-68955649 | MS.gene99411:intron | 30.0% |
| ! | TTTCAGTAACAAGTGTTGTA+AGG | - | chr5.1:68957670-68957689 | None:intergenic | 30.0% |
| !! | GATTTTCCGTTTACTTTTAC+AGG | + | chr5.1:68957282-68957301 | MS.gene99411:intron | 30.0% |
| !! | TTATTTTACATCTGTCTCTG+AGG | + | chr5.1:68956578-68956597 | MS.gene99411:intron | 30.0% |
| !! | TTTTCAAGCAATCATTCTTG+AGG | - | chr5.1:68956798-68956817 | None:intergenic | 30.0% |
| !!! | ACTAATCACTTGTTTTTGTC+TGG | + | chr5.1:68957596-68957615 | MS.gene99411:intron | 30.0% |
| !!! | GAGCAGTTTAGTTTTTTTAG+AGG | + | chr5.1:68955923-68955942 | MS.gene99411:intron | 30.0% |
| !!! | TTCAGATGTTACTTTTGATG+TGG | + | chr5.1:68956936-68956955 | MS.gene99411:CDS | 30.0% |
| !!! | TTCCTGTGAATTTTAGTTAC+TGG | + | chr5.1:68956408-68956427 | MS.gene99411:intron | 30.0% |
| AAACATAAACAGTAAACCCC+TGG | - | chr5.1:68957954-68957973 | None:intergenic | 35.0% | |
| AACATTTCACGTGATTAGAG+TGG | - | chr5.1:68958608-68958627 | None:intergenic | 35.0% | |
| AAGAGAAAAACGGACACATT+TGG | - | chr5.1:68958568-68958587 | None:intergenic | 35.0% | |
| ACATGAATAGAGTTAAGCTG+TGG | - | chr5.1:68956862-68956881 | None:intergenic | 35.0% | |
| AGACGGTGAAAACTATGTTT+AGG | + | chr5.1:68955682-68955701 | MS.gene99411:intron | 35.0% | |
| AGCATTTCACATGATTAGAG+TGG | - | chr5.1:68958358-68958377 | None:intergenic | 35.0% | |
| AGGCCCTAACTTTATATCTA+TGG | + | chr5.1:68956310-68956329 | MS.gene99411:intron | 35.0% | |
| ATGATACATGAAGGCTTCAT+TGG | + | chr5.1:68956361-68956380 | MS.gene99411:intron | 35.0% | |
| ATTCCTTAACCATTTCCTTG+AGG | + | chr5.1:68956274-68956293 | MS.gene99411:intron | 35.0% | |
| ATTGTTTAACCATTGCCTTG+AGG | - | chr5.1:68956163-68956182 | None:intergenic | 35.0% | |
| CATGAATAGAGTTAAGCTGT+GGG | - | chr5.1:68956861-68956880 | None:intergenic | 35.0% | |
| CATGCTACCCTTATATTTCA+AGG | - | chr5.1:68955413-68955432 | None:intergenic | 35.0% | |
| CTAATCATGTGAAATGCTGT+TGG | + | chr5.1:68958360-68958379 | MS.gene99411:intron | 35.0% | |
| CTTGCCAATCTAACTAGTTA+CGG | + | chr5.1:68957883-68957902 | MS.gene99411:intron | 35.0% | |
| GAAAATAACAAGAGAAGGGA+AGG | - | chr5.1:68958827-68958846 | None:intergenic | 35.0% | |
| GCACTATTGGAGAATAATGA+AGG | + | chr5.1:68956913-68956932 | MS.gene99411:CDS | 35.0% | |
| GCTTGATAAGATGGTTCTTA+TGG | + | chr5.1:68959214-68959233 | MS.gene99411:intron | 35.0% | |
| GGATAATTCTGCGTATGTTT+CGG | + | chr5.1:68955255-68955274 | MS.gene99411:CDS | 35.0% | |
| TAGAACAGAGGATCAAAAGA+TGG | - | chr5.1:68959118-68959137 | None:intergenic | 35.0% | |
| TATCCACATGCTTGATAAGA+TGG | + | chr5.1:68959205-68959224 | MS.gene99411:intron | 35.0% | |
| TCTGTAGATAAAATGCAGCA+TGG | - | chr5.1:68957308-68957327 | None:intergenic | 35.0% | |
| TGAAATATAAGGGTAGCATG+TGG | + | chr5.1:68955413-68955432 | MS.gene99411:CDS | 35.0% | |
| TGAAGCCTTCATGTATCATA+TGG | - | chr5.1:68956360-68956379 | None:intergenic | 35.0% | |
| TTCCTTAACCATTTCCTTGA+GGG | + | chr5.1:68956275-68956294 | MS.gene99411:intron | 35.0% | |
| TTGTTTAACCATTGCCTTGA+GGG | - | chr5.1:68956162-68956181 | None:intergenic | 35.0% | |
| TTTCAAGAGAGCGATCAAAA+TGG | - | chr5.1:68955378-68955397 | None:intergenic | 35.0% | |
| TTTGCTTCTCAAAATCTAGC+CGG | + | chr5.1:68957562-68957581 | MS.gene99411:CDS | 35.0% | |
| ! | ACTAAGGTCTTTTACATAGC+AGG | - | chr5.1:68958431-68958450 | None:intergenic | 35.0% |
| ! | ATTTTACATCTGTCTCTGAG+GGG | + | chr5.1:68956580-68956599 | MS.gene99411:intron | 35.0% |
| ! | CAACTTTGTTTAACTAGCAG+AGG | - | chr5.1:68957735-68957754 | None:intergenic | 35.0% |
| ! | CTTTTCCGTTCTCGATAATT+TGG | + | chr5.1:68958875-68958894 | MS.gene99411:intron | 35.0% |
| ! | GTTTCTCTTACAGGTTTTCT+AGG | - | chr5.1:68955795-68955814 | None:intergenic | 35.0% |
| ! | TCCCTTTTACCATCTTTTCA+TGG | + | chr5.1:68957125-68957144 | MS.gene99411:intron | 35.0% |
| ! | TGTGACAGATTTAGAACCAA+AGG | + | chr5.1:68957062-68957081 | MS.gene99411:CDS | 35.0% |
| ! | TTCACCGTCTTTTCTACTAT+AGG | - | chr5.1:68955672-68955691 | None:intergenic | 35.0% |
| ! | TTTCATGGTAGTGTTAAGCA+CGG | + | chr5.1:68957140-68957159 | MS.gene99411:intron | 35.0% |
| !! | CGCTTAACTTATTTTCGTGT+TGG | - | chr5.1:68955565-68955584 | None:intergenic | 35.0% |
| !! | TGTTTTTGTCTGGTTTGCAT+GGG | + | chr5.1:68957606-68957625 | MS.gene99411:intron | 35.0% |
| !!! | AACTTCCTTTTTTGAACAGG+TGG | - | chr5.1:68958137-68958156 | None:intergenic | 35.0% |
| !!! | ATGTTACTTTTGATGTGGCT+GGG | + | chr5.1:68956941-68956960 | MS.gene99411:CDS | 35.0% |
| !!! | ATTTTTTGATGGCACGGATA+TGG | + | chr5.1:68957023-68957042 | MS.gene99411:CDS | 35.0% |
| !!! | GTTACAAGCGTTTTTTCAGA+CGG | + | chr5.1:68956749-68956768 | MS.gene99411:CDS | 35.0% |
| !!! | TTGTTTTTGTCTGGTTTGCA+TGG | + | chr5.1:68957605-68957624 | MS.gene99411:intron | 35.0% |
| AAAAACAGATAGAAACCCGC+AGG | - | chr5.1:68959058-68959077 | None:intergenic | 40.0% | |
| AAGTCAGCAATGCATCGTTA+TGG | - | chr5.1:68958208-68958227 | None:intergenic | 40.0% | |
| AATAACAAGAGAAGGGAAGG+AGG | - | chr5.1:68958824-68958843 | None:intergenic | 40.0% | |
| AATGCTAAACAATGCCCTCA+AGG | + | chr5.1:68956145-68956164 | MS.gene99411:intron | 40.0% | |
| ACATACGCAGAATTATCCTC+CGG | - | chr5.1:68955253-68955272 | None:intergenic | 40.0% | |
| ATATAAGGGTAGCATGTGGT+AGG | + | chr5.1:68955417-68955436 | MS.gene99411:intron | 40.0% | |
| ATATAGTCAACCCTGCTTAG+TGG | + | chr5.1:68958729-68958748 | MS.gene99411:intron | 40.0% | |
| CCATGAAAGAAAAATGCCCA+TGG | + | chr5.1:68959279-68959298 | MS.gene99411:CDS | 40.0% | |
| CGATCTACTTCTATCCTGAT+GGG | + | chr5.1:68955221-68955240 | MS.gene99411:CDS | 40.0% | |
| CGCACAAATTCTTGATCCAA+GGG | + | chr5.1:68955122-68955141 | MS.gene99411:CDS | 40.0% | |
| CGGTGAAAACTATGTTTAGG+CGG | + | chr5.1:68955685-68955704 | MS.gene99411:intron | 40.0% | |
| GAACCATCTTATCAAGCATG+TGG | - | chr5.1:68959211-68959230 | None:intergenic | 40.0% | |
| GAAGTTTCCTGGTCATAAGT+TGG | + | chr5.1:68956966-68956985 | MS.gene99411:CDS | 40.0% | |
| GACATGGCTAATTCTATGGA+GGG | + | chr5.1:68957913-68957932 | MS.gene99411:intron | 40.0% | |
| GCATGGCCTGTAAAAGTAAA+CGG | - | chr5.1:68957291-68957310 | None:intergenic | 40.0% | |
| GGAAAAATCTCAGAGTGTGT+GGG | + | chr5.1:68959361-68959380 | MS.gene99411:CDS | 40.0% | |
| GTGATCCAATGTCAGATTCT+GGG | - | chr5.1:68956885-68956904 | None:intergenic | 40.0% | |
| GTTGTTTGACATACACGAGT+AGG | + | chr5.1:68957751-68957770 | MS.gene99411:intron | 40.0% | |
| TAGTCTATGCAGTTGTGTGT+GGG | + | chr5.1:68956433-68956452 | MS.gene99411:intron | 40.0% | |
| TATAAGGGTAGCATGTGGTA+GGG | + | chr5.1:68955418-68955437 | MS.gene99411:intron | 40.0% | |
| TATAGTCAACCCTGCTTAGT+GGG | + | chr5.1:68958730-68958749 | MS.gene99411:intron | 40.0% | |
| TCGATAACGCAAACGGTTAA+CGG | + | chr5.1:68955097-68955116 | MS.gene99411:CDS | 40.0% | |
| TCGCACAAATTCTTGATCCA+AGG | + | chr5.1:68955121-68955140 | MS.gene99411:CDS | 40.0% | |
| TCTGACATTGGATCACACTT+TGG | + | chr5.1:68956889-68956908 | MS.gene99411:CDS | 40.0% | |
| TGACATGGCTAATTCTATGG+AGG | + | chr5.1:68957912-68957931 | MS.gene99411:intron | 40.0% | |
| TGTGATCCAATGTCAGATTC+TGG | - | chr5.1:68956886-68956905 | None:intergenic | 40.0% | |
| TTAGCTGCAGCAGACAAATA+TGG | + | chr5.1:68957412-68957431 | MS.gene99411:CDS | 40.0% | |
| TTAGTCTATGCAGTTGTGTG+TGG | + | chr5.1:68956432-68956451 | MS.gene99411:intron | 40.0% | |
| TTGTTGATCAGAGTGGTCAA+GGG | + | chr5.1:68955335-68955354 | MS.gene99411:CDS | 40.0% | |
| TTTGATCGCTCTCTTGAAAG+TGG | + | chr5.1:68955379-68955398 | MS.gene99411:CDS | 40.0% | |
| ! | AAAACCTTTTCCCACTAAGC+AGG | - | chr5.1:68958743-68958762 | None:intergenic | 40.0% |
| ! | AAACCTTTTCCCACTAAGCA+GGG | - | chr5.1:68958742-68958761 | None:intergenic | 40.0% |
| ! | ATCACACTTTGGTGCACTAT+TGG | + | chr5.1:68956900-68956919 | MS.gene99411:CDS | 40.0% |
| ! | ATTTGGAACACATGAAGGCT+AGG | - | chr5.1:68958551-68958570 | None:intergenic | 40.0% |
| ! | CCATGGGCATTTTTCTTTCA+TGG | - | chr5.1:68959282-68959301 | None:intergenic | 40.0% |
| ! | GACACATTTGGAACACATGA+AGG | - | chr5.1:68958556-68958575 | None:intergenic | 40.0% |
| ! | TCGAAATTCTGGAGATCTAG+CGG | - | chr5.1:68956998-68957017 | None:intergenic | 40.0% |
| !! | GCAAACAGCTTTTAACTCTG+TGG | - | chr5.1:68957536-68957555 | None:intergenic | 40.0% |
| !! | TGTAGCCAACATTTTGACCT+TGG | + | chr5.1:68957495-68957514 | MS.gene99411:CDS | 40.0% |
| !!! | GATGTTACTTTTGATGTGGC+TGG | + | chr5.1:68956940-68956959 | MS.gene99411:CDS | 40.0% |
| !!! | TGTTACTTTTGATGTGGCTG+GGG | + | chr5.1:68956942-68956961 | MS.gene99411:CDS | 40.0% |
| AAACAATGCCCTCAAGGCAA+TGG | + | chr5.1:68956151-68956170 | MS.gene99411:intron | 45.0% | |
| AACTAGTGCCCTCAAGGAAA+TGG | - | chr5.1:68956286-68956305 | None:intergenic | 45.0% | |
| AAGATCTCTGACTGTAGCCA+TGG | - | chr5.1:68959299-68959318 | None:intergenic | 45.0% | |
| AAGCCTTACCCTACTAAGTG+GGG | - | chr5.1:68955884-68955903 | None:intergenic | 45.0% | |
| AAGGAGAGTAGATCAGATGG+AGG | + | chr5.1:68955746-68955765 | MS.gene99411:intron | 45.0% | |
| AGATCTCTGACTGTAGCCAT+GGG | - | chr5.1:68959298-68959317 | None:intergenic | 45.0% | |
| AGATTCCCTTACAGAAGAGG+TGG | + | chr5.1:68957327-68957346 | MS.gene99411:CDS | 45.0% | |
| AGGGTGATAGTTGCAGTACA+GGG | + | chr5.1:68959339-68959358 | MS.gene99411:CDS | 45.0% | |
| AGTCTATGCAGTTGTGTGTG+GGG | + | chr5.1:68956434-68956453 | MS.gene99411:intron | 45.0% | |
| AGTTGTGTGTGGGGATAACT+TGG | + | chr5.1:68956443-68956462 | MS.gene99411:intron | 45.0% | |
| ATGAGGTCAGACCATTGTAG+AGG | + | chr5.1:68959032-68959051 | MS.gene99411:intron | 45.0% | |
| ATGCATTGTCCTTGTCCACA+AGG | - | chr5.1:68956662-68956681 | None:intergenic | 45.0% | |
| CAACTGTACAGTTGGAGTTG+TGG | + | chr5.1:68956819-68956838 | MS.gene99411:CDS | 45.0% | |
| CAAGCCTTACCCTACTAAGT+GGG | - | chr5.1:68955885-68955904 | None:intergenic | 45.0% | |
| CAGAGATTCCCTTACAGAAG+AGG | + | chr5.1:68957324-68957343 | MS.gene99411:CDS | 45.0% | |
| CATAAACAGTAAACCCCTGG+TGG | - | chr5.1:68957951-68957970 | None:intergenic | 45.0% | |
| CATGTCCACCTCTTCTGTAA+GGG | - | chr5.1:68957335-68957354 | None:intergenic | 45.0% | |
| CATGTCCCAGAATCTGACAT+TGG | + | chr5.1:68956877-68956896 | MS.gene99411:CDS | 45.0% | |
| CCATCTGATCTACTCTCCTT+AGG | - | chr5.1:68955746-68955765 | None:intergenic | 45.0% | |
| CCTAAGGAGAGTAGATCAGA+TGG | + | chr5.1:68955743-68955762 | MS.gene99411:intron | 45.0% | |
| CTATCCTGATGGGAAGAATC+CGG | + | chr5.1:68955231-68955250 | MS.gene99411:CDS | 45.0% | |
| CTTGTTGATCAGAGTGGTCA+AGG | + | chr5.1:68955334-68955353 | MS.gene99411:CDS | 45.0% | |
| GACATGTGGATTCTGACCTA+AGG | + | chr5.1:68955727-68955746 | MS.gene99411:intron | 45.0% | |
| GAGATCTTGAAGACAGTTGC+TGG | + | chr5.1:68959311-68959330 | MS.gene99411:CDS | 45.0% | |
| GAGGAAAGTCAAAACACCAG+AGG | + | chr5.1:68955765-68955784 | MS.gene99411:intron | 45.0% | |
| GAGTTGTAACCTTGTGGACA+AGG | + | chr5.1:68956650-68956669 | MS.gene99411:intron | 45.0% | |
| GCGATCTACTTCTATCCTGA+TGG | + | chr5.1:68955220-68955239 | MS.gene99411:CDS | 45.0% | |
| GCTATCAATGTCTCCGAAAC+TGG | - | chr5.1:68957385-68957404 | None:intergenic | 45.0% | |
| GGGAAAAATCTCAGAGTGTG+TGG | + | chr5.1:68959360-68959379 | MS.gene99411:CDS | 45.0% | |
| GTCAGCCAAGGTCAAAATGT+TGG | - | chr5.1:68957503-68957522 | None:intergenic | 45.0% | |
| GTTTAGGCGGTTTAGTCATG+TGG | + | chr5.1:68955698-68955717 | MS.gene99411:intron | 45.0% | |
| TCATGTGGAGAGAAGACATG+TGG | + | chr5.1:68955713-68955732 | MS.gene99411:intron | 45.0% | |
| TCCACAAGGTTACAACTCAG+AGG | - | chr5.1:68956648-68956667 | None:intergenic | 45.0% | |
| TCCTCTGAGTTGTAACCTTG+TGG | + | chr5.1:68956644-68956663 | MS.gene99411:intron | 45.0% | |
| TCGGTCAAACGCAAACTAGT+AGG | + | chr5.1:68957982-68958001 | MS.gene99411:intron | 45.0% | |
| TCTATGGAGGGTTTGACCAT+AGG | + | chr5.1:68957925-68957944 | MS.gene99411:intron | 45.0% | |
| TCTCGTCTTTGCAAGGACAT+TGG | + | chr5.1:68957463-68957482 | MS.gene99411:CDS | 45.0% | |
| TGCAGCAGACAAATATGGCT+TGG | + | chr5.1:68957417-68957436 | MS.gene99411:CDS | 45.0% | |
| TGCCCTCAAGGAAATGGTTA+AGG | - | chr5.1:68956280-68956299 | None:intergenic | 45.0% | |
| TGCTGCCACCTGTTCAAAAA+AGG | + | chr5.1:68958129-68958148 | MS.gene99411:intron | 45.0% | |
| TTAACTCTGTGGCATGGCAA+TGG | - | chr5.1:68957525-68957544 | None:intergenic | 45.0% | |
| TTGTTCAGCTGTCATGAGGT+CGG | + | chr5.1:68959244-68959263 | MS.gene99411:intron | 45.0% | |
| ! | AGGTTTTCTAGGTCTTCCTC+TGG | - | chr5.1:68955784-68955803 | None:intergenic | 45.0% |
| ! | CAGACAAATATGGCTTGGAG+AGG | + | chr5.1:68957422-68957441 | MS.gene99411:CDS | 45.0% |
| ! | TGTTTCGGTTTTCATCGCGT+TGG | + | chr5.1:68955270-68955289 | MS.gene99411:CDS | 45.0% |
| !! | CAGCTTTTAACTCTGTGGCA+TGG | - | chr5.1:68957531-68957550 | None:intergenic | 45.0% |
| !! | TCCTGGTCATAAGTTGGTGT+TGG | + | chr5.1:68956972-68956991 | MS.gene99411:CDS | 45.0% |
| AAGGGAAGGAGGAGCTTACA+TGG | - | chr5.1:68958813-68958832 | None:intergenic | 50.0% | |
| AGGGAAGGAGGAGCTTACAT+GGG | - | chr5.1:68958812-68958831 | None:intergenic | 50.0% | |
| CAACCCTGCTTAGTGGGAAA+AGG | + | chr5.1:68958736-68958755 | MS.gene99411:intron | 50.0% | |
| CCAAGCCTTACCCTACTAAG+TGG | - | chr5.1:68955886-68955905 | None:intergenic | 50.0% | |
| CCACTTAGTAGGGTAAGGCT+TGG | + | chr5.1:68955883-68955902 | MS.gene99411:intron | 50.0% | |
| CCATGTCCACCTCTTCTGTA+AGG | - | chr5.1:68957336-68957355 | None:intergenic | 50.0% | |
| CCTTACAGAAGAGGTGGACA+TGG | + | chr5.1:68957333-68957352 | MS.gene99411:CDS | 50.0% | |
| CTTACCCTACTAAGTGGGGT+CGG | - | chr5.1:68955880-68955899 | None:intergenic | 50.0% | |
| CTTGCTAACTAGTGCCCTCA+AGG | - | chr5.1:68956292-68956311 | None:intergenic | 50.0% | |
| GAGATCGTTGGGGAGGATAA+CGG | - | chr5.1:68955073-68955092 | None:intergenic | 50.0% | |
| GAGGGTGATAGTTGCAGTAC+AGG | + | chr5.1:68959338-68959357 | MS.gene99411:CDS | 50.0% | |
| GCCAACACCAACTTATGACC+AGG | - | chr5.1:68956976-68956995 | None:intergenic | 50.0% | |
| GGGTGATAGTTGCAGTACAG+GGG | + | chr5.1:68959340-68959359 | MS.gene99411:CDS | 50.0% | |
| GTCACCGCCATCTGAAAGTT+GGG | - | chr5.1:68959387-68959406 | None:intergenic | 50.0% | |
| TAGAGAGAGAGGGAGAGACT+TGG | + | chr5.1:68955640-68955659 | MS.gene99411:intron | 50.0% | |
| TGTCACCGCCATCTGAAAGT+TGG | - | chr5.1:68959388-68959407 | None:intergenic | 50.0% | |
| TGTCGGAGATGATGCGTTTC+CGG | - | chr5.1:68955032-68955051 | None:intergenic | 50.0% | |
| TTATCGAGCGCGAGATCGTT+GGG | - | chr5.1:68955084-68955103 | None:intergenic | 50.0% | |
| ! | AAGACAGTTGCTGGCTGTGA+GGG | + | chr5.1:68959320-68959339 | MS.gene99411:CDS | 50.0% |
| ! | CTCACGCTTGTTGATCAGAG+TGG | + | chr5.1:68955328-68955347 | MS.gene99411:CDS | 50.0% |
| ! | GAGTGGTCAAGGGAAGCATA+AGG | + | chr5.1:68955345-68955364 | MS.gene99411:CDS | 50.0% |
| ! | GGACTTGTTCAGCTGTCATG+AGG | + | chr5.1:68959240-68959259 | MS.gene99411:intron | 50.0% |
| ! | TCAGATGGCGGTGACACAAT+TGG | + | chr5.1:68959392-68959411 | MS.gene99411:CDS | 50.0% |
| ! | TGGTAGTGTTAAGCACGGCT+AGG | + | chr5.1:68957145-68957164 | MS.gene99411:intron | 50.0% |
| !! | CTTGAGGGCACTAGTTAGCA+AGG | + | chr5.1:68956290-68956309 | MS.gene99411:intron | 50.0% |
| AAACCCGCAGGCCTCTACAA+TGG | - | chr5.1:68959046-68959065 | None:intergenic | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | - | chr5.1:68955872-68955891 | None:intergenic | 55.0% | |
| AGACCATTGTAGAGGCCTGC+GGG | + | chr5.1:68959040-68959059 | MS.gene99411:intron | 55.0% | |
| AGTAAACCCCTGGTGGCCTA+TGG | - | chr5.1:68957944-68957963 | None:intergenic | 55.0% | |
| ATGGCGGTGACACAATTGGC+AGG | + | chr5.1:68959396-68959415 | MS.gene99411:CDS | 55.0% | |
| CAGACCATTGTAGAGGCCTG+CGG | + | chr5.1:68959039-68959058 | MS.gene99411:intron | 55.0% | |
| CGACCCCACTTAGTAGGGTA+AGG | + | chr5.1:68955878-68955897 | MS.gene99411:intron | 55.0% | |
| CTCGCGCTCGATAACGCAAA+CGG | + | chr5.1:68955090-68955109 | MS.gene99411:CDS | 55.0% | |
| GGTTTGACCATAGGCCACCA+GGG | + | chr5.1:68957934-68957953 | MS.gene99411:intron | 55.0% | |
| GTAGCCGACCCCACTTAGTA+GGG | + | chr5.1:68955873-68955892 | MS.gene99411:intron | 55.0% | |
| GTGCGAGTCTCGTCTTTGCA+AGG | + | chr5.1:68957456-68957475 | MS.gene99411:CDS | 55.0% | |
| GTGTGGGCCCAACTTTCAGA+TGG | + | chr5.1:68959377-68959396 | MS.gene99411:CDS | 55.0% | |
| GTTATCGAGCGCGAGATCGT+TGG | - | chr5.1:68955085-68955104 | None:intergenic | 55.0% | |
| GTTTGACCATAGGCCACCAG+GGG | + | chr5.1:68957935-68957954 | MS.gene99411:intron | 55.0% | |
| TACTCGCTCGCGAAGGGAAT+GGG | + | chr5.1:68955145-68955164 | MS.gene99411:CDS | 55.0% | |
| TATCGAGCGCGAGATCGTTG+GGG | - | chr5.1:68955083-68955102 | None:intergenic | 55.0% | |
| TCAGCTGTCATGAGGTCGGA+TGG | + | chr5.1:68959248-68959267 | MS.gene99411:intron | 55.0% | |
| TCCTCCGGATTCTTCCCATC+AGG | - | chr5.1:68955238-68955257 | None:intergenic | 55.0% | |
| TCCTGATGGGAAGAATCCGG+AGG | + | chr5.1:68955234-68955253 | MS.gene99411:CDS | 55.0% | |
| TGGCACGGATATGGACACAC+AGG | + | chr5.1:68957032-68957051 | MS.gene99411:CDS | 55.0% | |
| TGGGCCCAACTTTCAGATGG+CGG | + | chr5.1:68959380-68959399 | MS.gene99411:CDS | 55.0% | |
| TGTAGCCGACCCCACTTAGT+AGG | + | chr5.1:68955872-68955891 | MS.gene99411:intron | 55.0% | |
| ! | AGCGATGTTTTCACCGTCGG+AGG | + | chr5.1:68955187-68955206 | MS.gene99411:CDS | 55.0% |
| ! | GAAGACAGTTGCTGGCTGTG+AGG | + | chr5.1:68959319-68959338 | MS.gene99411:CDS | 55.0% |
| ! | GCGAGCGATGTTTTCACCGT+CGG | + | chr5.1:68955184-68955203 | MS.gene99411:CDS | 55.0% |
| ! | GCGATGTTTTCACCGTCGGA+GGG | + | chr5.1:68955188-68955207 | MS.gene99411:CDS | 55.0% |
| ! | TTCATCGCGTTGGCGAGTGA+AGG | + | chr5.1:68955280-68955299 | MS.gene99411:CDS | 55.0% |
| CTCGCGAAGGGAATGGGAGT+TGG | + | chr5.1:68955151-68955170 | MS.gene99411:CDS | 60.0% | |
| GGCATGGCAATGGTCAGCCA+AGG | - | chr5.1:68957515-68957534 | None:intergenic | 60.0% | |
| GGGTTTGACCATAGGCCACC+AGG | + | chr5.1:68957933-68957952 | MS.gene99411:intron | 60.0% | |
| GTACTCGCTCGCGAAGGGAA+TGG | + | chr5.1:68955144-68955163 | MS.gene99411:CDS | 60.0% | |
| GTGGCTGGGGAGAAGTTTCC+TGG | + | chr5.1:68956955-68956974 | MS.gene99411:CDS | 60.0% | |
| TCCGACACCATCACCGTCAC+CGG | + | chr5.1:68955045-68955064 | MS.gene99411:CDS | 60.0% | |
| ! | CGCGTTGGCGAGTGAAGGAA+CGG | + | chr5.1:68955285-68955304 | MS.gene99411:CDS | 60.0% |
| !! | CAAGGGTACTCGCTCGCGAA+GGG | + | chr5.1:68955139-68955158 | MS.gene99411:CDS | 60.0% |
| !! | CACCGTCGGAGGGTATCAGT+GGG | + | chr5.1:68955198-68955217 | MS.gene99411:CDS | 60.0% |
| !! | TCACCGTCGGAGGGTATCAG+TGG | + | chr5.1:68955197-68955216 | MS.gene99411:CDS | 60.0% |
| !! | TGGGGGAAGTACTGCTCGAG+AGG | + | chr5.1:68957248-68957267 | MS.gene99411:intron | 60.0% |
| CCTTCGCGAGCGAGTACCCT+TGG | - | chr5.1:68955141-68955160 | None:intergenic | 65.0% | |
| CGCCCACTGATACCCTCCGA+CGG | - | chr5.1:68955203-68955222 | None:intergenic | 65.0% | |
| ! | GCCGGTGACGGTGATGGTGT+CGG | - | chr5.1:68955049-68955068 | None:intergenic | 65.0% |
| ! | GTTGGGGAGGATAACGGCGC+CGG | - | chr5.1:68955067-68955086 | None:intergenic | 65.0% |
| !! | CCAAGGGTACTCGCTCGCGA+AGG | + | chr5.1:68955138-68955157 | MS.gene99411:CDS | 65.0% |
| !! | GAGGATAACGGCGCCGGTGA+CGG | - | chr5.1:68955061-68955080 | None:intergenic | 65.0% |
| CGAGCGCGAGATCGTTGGGG+AGG | - | chr5.1:68955080-68955099 | None:intergenic | 70.0% | |
| !! | AACGGCGCCGGTGACGGTGA+TGG | - | chr5.1:68955055-68955074 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 68955025 | 68959439 | 68955025 | ID=MS.gene99411 |
| chr5.1 | mRNA | 68955025 | 68959439 | 68955025 | ID=MS.gene99411.t1;Parent=MS.gene99411 |
| chr5.1 | exon | 68955025 | 68955434 | 68955025 | ID=MS.gene99411.t1.exon1;Parent=MS.gene99411.t1 |
| chr5.1 | CDS | 68955025 | 68955434 | 68955025 | ID=cds.MS.gene99411.t1;Parent=MS.gene99411.t1 |
| chr5.1 | exon | 68956747 | 68957092 | 68956747 | ID=MS.gene99411.t1.exon2;Parent=MS.gene99411.t1 |
| chr5.1 | CDS | 68956747 | 68957092 | 68956747 | ID=cds.MS.gene99411.t1;Parent=MS.gene99411.t1 |
| chr5.1 | exon | 68957304 | 68957583 | 68957304 | ID=MS.gene99411.t1.exon3;Parent=MS.gene99411.t1 |
| chr5.1 | CDS | 68957304 | 68957583 | 68957304 | ID=cds.MS.gene99411.t1;Parent=MS.gene99411.t1 |
| chr5.1 | exon | 68959252 | 68959439 | 68959252 | ID=MS.gene99411.t1.exon4;Parent=MS.gene99411.t1 |
| chr5.1 | CDS | 68959252 | 68959439 | 68959252 | ID=cds.MS.gene99411.t1;Parent=MS.gene99411.t1 |
| Gene Sequence |
| Protein sequence |
