Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99413.t1 | XP_003617059.1 | 82.7 | 353 | 54 | 1 | 1 | 353 | 1 | 346 | 2.30E-88 | 335.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99413.t1 | D5K211 | 35.1 | 94 | 56 | 3 | 13 | 102 | 16 | 108 | 8.4e-07 | 56.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99413.t1 | G7KHG6 | 82.7 | 353 | 54 | 1 | 1 | 353 | 1 | 346 | 1.7e-88 | 335.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053581 | MS.gene99413 | 0.802269 | 6.08E-49 | -1.69E-46 |
| MS.gene055144 | MS.gene99413 | 0.804957 | 1.68E-49 | -1.69E-46 |
| MS.gene055537 | MS.gene99413 | 0.809646 | 1.71E-50 | -1.69E-46 |
| MS.gene058339 | MS.gene99413 | 0.809498 | 1.84E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99413.t1 | MTR_5g087480 | 94.901 | 353 | 11 | 3 | 1 | 353 | 1 | 346 | 0.0 | 664 |
| MS.gene99413.t1 | MTR_5g087480 | 84.986 | 353 | 9 | 4 | 1 | 353 | 1 | 309 | 0.0 | 581 |
| MS.gene99413.t1 | MTR_5g087470 | 34.483 | 348 | 139 | 13 | 1 | 342 | 1 | 265 | 6.45e-34 | 126 |
| MS.gene99413.t1 | MTR_5g087450 | 44.545 | 110 | 58 | 2 | 1 | 108 | 3 | 111 | 5.40e-25 | 102 |
| MS.gene99413.t1 | MTR_6g478190 | 32.787 | 122 | 75 | 2 | 9 | 128 | 10 | 126 | 1.39e-13 | 68.6 |
| MS.gene99413.t1 | MTR_8g046245 | 28.634 | 227 | 132 | 8 | 4 | 226 | 15 | 215 | 7.39e-13 | 69.7 |
| MS.gene99413.t1 | MTR_7g086130 | 37.209 | 86 | 52 | 1 | 10 | 93 | 8 | 93 | 2.69e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99413.t1 | AT2G27140 | 40.252 | 159 | 74 | 5 | 9 | 155 | 10 | 159 | 1.79e-26 | 105 |
| MS.gene99413.t1 | AT5G20970 | 39.844 | 128 | 73 | 3 | 10 | 135 | 7 | 132 | 3.55e-19 | 86.3 |
Find 84 sgRNAs with CRISPR-Local
Find 107 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTTCTCTTCTTTAGCTTT+TGG | 0.144895 | 5.1:-68936772 | None:intergenic |
| GCTTTCTCTTCTATAGCTTT+TGG | 0.148334 | 5.1:-68937006 | None:intergenic |
| GCTTTCTCTTCTTTAGCTTT+TGG | 0.158375 | 5.1:-68936883 | None:intergenic |
| AGCAATAAACTTGGCATCTT+TGG | 0.197304 | 5.1:-68937199 | None:intergenic |
| ATCTTATTGGTCGTGGGACT+TGG | 0.235571 | 5.1:+68937351 | MS.gene99413:CDS |
| TTTGGTCTTGGAGCAGCTTC+TGG | 0.245115 | 5.1:-68936712 | None:intergenic |
| TATTTATCCCATTCATGATA+TGG | 0.253330 | 5.1:-68936214 | None:intergenic |
| TTTGGTCTTGGAGCTTCTTC+TGG | 0.254733 | 5.1:-68936934 | None:intergenic |
| TTTAGTCTTGGAGCTTCTTC+TGG | 0.262302 | 5.1:-68936823 | None:intergenic |
| CTTAACATGCAGGATATAGA+AGG | 0.298323 | 5.1:+68936479 | MS.gene99413:intron |
| GTCTTTCACCTATCAGCCTT+AGG | 0.314056 | 5.1:-68936537 | None:intergenic |
| TGTGATGGTTCCTTTGGTCT+TGG | 0.318915 | 5.1:-68936724 | None:intergenic |
| CTTTATTGTAGAAATACATT+TGG | 0.339189 | 5.1:+68937375 | MS.gene99413:CDS |
| TGTGGCGATTCCTTTGGTCT+TGG | 0.352071 | 5.1:-68936946 | None:intergenic |
| GGATTTGTTGTTGTTTCCTT+AGG | 0.356840 | 5.1:-68936688 | None:intergenic |
| ATGTGTCATGCTAATCTTAT+TGG | 0.363566 | 5.1:+68937338 | MS.gene99413:CDS |
| TCATAGACACGATCAGCTTC+TGG | 0.364950 | 5.1:-68936181 | None:intergenic |
| TGTAGATTTCACTCTCTCTA+AGG | 0.366735 | 5.1:+68937239 | MS.gene99413:CDS |
| CTCTAAGGCTCTCTGTAATC+AGG | 0.374231 | 5.1:+68937254 | MS.gene99413:CDS |
| TGCGATGGTTCCTTTAGTCT+TGG | 0.384700 | 5.1:-68936835 | None:intergenic |
| AAATACATTTGGATCGTCTC+AGG | 0.407520 | 5.1:+68937386 | MS.gene99413:CDS |
| ACAAAAGGTTGATGAGCAAA+AGG | 0.416395 | 5.1:+68936744 | MS.gene99413:CDS |
| TGGATCGTCTCAGGGAGAAT+TGG | 0.416829 | 5.1:+68937395 | MS.gene99413:CDS |
| ACAAAAGGCTGATGAGCAAA+AGG | 0.421804 | 5.1:+68936966 | MS.gene99413:CDS |
| AAACCTGCCCTAAGGCTGAT+AGG | 0.427961 | 5.1:+68936529 | MS.gene99413:CDS |
| GCAAAACGTTGATGAGCAAA+AGG | 0.446590 | 5.1:+68936855 | MS.gene99413:CDS |
| TCTTTCACCTATCAGCCTTA+GGG | 0.449497 | 5.1:-68936536 | None:intergenic |
| CATGCTAATCTTATTGGTCG+TGG | 0.455442 | 5.1:+68937344 | MS.gene99413:CDS |
| ACTTTGAACCATATCATGAA+TGG | 0.461998 | 5.1:+68936206 | MS.gene99413:CDS |
| CGTTTCACTGTCATGCTACC+AGG | 0.466798 | 5.1:+68936244 | MS.gene99413:CDS |
| TCTTAAGAAGTGGAAGAGAT+TGG | 0.472099 | 5.1:+68937311 | MS.gene99413:CDS |
| GCGGAGAAAGTGAGGACTAA+TGG | 0.476427 | 5.1:+68937132 | MS.gene99413:CDS |
| TGCTAAACTTACTAATCCTA+AGG | 0.484970 | 5.1:+68936672 | MS.gene99413:CDS |
| TCTTATTGGTCGTGGGACTT+GGG | 0.489096 | 5.1:+68937352 | MS.gene99413:CDS |
| CGCCATCTGTTCTGAAAGGT+TGG | 0.490011 | 5.1:-68936559 | None:intergenic |
| CAGGATGAAAATGAAGCCCT+TGG | 0.494161 | 5.1:+68937273 | MS.gene99413:CDS |
| ACCAAAGGAATCGCCACAAA+AGG | 0.496416 | 5.1:+68936951 | MS.gene99413:CDS |
| CTTTGAACCATATCATGAAT+GGG | 0.508732 | 5.1:+68936207 | MS.gene99413:CDS |
| ATGCTAATCTTATTGGTCGT+GGG | 0.509173 | 5.1:+68937345 | MS.gene99413:CDS |
| ATTGTATCATTCTCCTTCTG+TGG | 0.509921 | 5.1:-68937069 | None:intergenic |
| ACCAAAGGAACCATCACAAA+AGG | 0.514374 | 5.1:+68936729 | MS.gene99413:CDS |
| CAAATATCAGTACATCAGTA+AGG | 0.527580 | 5.1:-68937441 | None:intergenic |
| TTATTGCTAGATGCAAAACC+AGG | 0.528675 | 5.1:+68937214 | MS.gene99413:CDS |
| TTTGCATCTAGCAATAAACT+TGG | 0.529793 | 5.1:-68937208 | None:intergenic |
| CAGTGTGACTGCGACATTTG+AGG | 0.530897 | 5.1:+68936627 | MS.gene99413:CDS |
| AGAAGAGAAAGTAGAAACAA+AGG | 0.532724 | 5.1:+68936783 | MS.gene99413:CDS |
| CATGAATGGGATAAATATGA+TGG | 0.533667 | 5.1:+68936220 | MS.gene99413:CDS |
| AGTGTGACTGCGACATTTGA+GGG | 0.535084 | 5.1:+68936628 | MS.gene99413:CDS |
| TCACCTATCAGCCTTAGGGC+AGG | 0.538165 | 5.1:-68936532 | None:intergenic |
| GTGTCATAATCAGAAGGAAT+GGG | 0.540119 | 5.1:-68936601 | None:intergenic |
| GCCCTTGGAAATTCGACCAC+AGG | 0.540651 | 5.1:+68937288 | MS.gene99413:CDS |
| GAGAGTGAAATCTACAAGCC+TGG | 0.545424 | 5.1:-68937232 | None:intergenic |
| GGTCTTGGAGCAGCTTCTGG+TGG | 0.547053 | 5.1:-68936709 | None:intergenic |
| AGTCTTGGAGCTTCTTCTGG+TGG | 0.547838 | 5.1:-68936820 | None:intergenic |
| CAAAAGGCTGATGAGCAAAA+GGG | 0.548506 | 5.1:+68936967 | MS.gene99413:CDS |
| CAAAAGGTTGATGAGCAAAA+GGG | 0.551402 | 5.1:+68936745 | MS.gene99413:CDS |
| AGAAGAAGCTCCAAGACTAA+AGG | 0.551790 | 5.1:+68936825 | MS.gene99413:CDS |
| GACCTGTGGTCGAATTTCCA+AGG | 0.558465 | 5.1:-68937290 | None:intergenic |
| AGAAGAGAAAGCAGAAACAA+AGG | 0.563791 | 5.1:+68936894 | MS.gene99413:CDS |
| GACCAACCTTTCAGAACAGA+TGG | 0.572272 | 5.1:+68936557 | MS.gene99413:CDS |
| GTATCATTCTCCTTCTGTGG+TGG | 0.573843 | 5.1:-68937066 | None:intergenic |
| CTGGTAGCATGACAGTGAAA+CGG | 0.576811 | 5.1:-68936243 | None:intergenic |
| CATTCCTTCTGATTATGACA+CGG | 0.581427 | 5.1:+68936603 | MS.gene99413:CDS |
| TGACCTCAAAACCTGCCCTA+AGG | 0.581927 | 5.1:+68936521 | MS.gene99413:CDS |
| CGTGTCATAATCAGAAGGAA+TGG | 0.584263 | 5.1:-68936602 | None:intergenic |
| TTAACATGCAGGATATAGAA+GGG | 0.585688 | 5.1:+68936480 | MS.gene99413:intron |
| ATATAGAAGGGATCAAATGA+AGG | 0.587427 | 5.1:+68936492 | MS.gene99413:CDS |
| CAAAACGTTGATGAGCAAAA+GGG | 0.587682 | 5.1:+68936856 | MS.gene99413:CDS |
| AATACATTTGGATCGTCTCA+GGG | 0.587906 | 5.1:+68937387 | MS.gene99413:CDS |
| TGAGCAAAAGGGTGCTCAAG+AGG | 0.590093 | 5.1:+68936978 | MS.gene99413:CDS |
| ACCTGTGGTCGAATTTCCAA+GGG | 0.591551 | 5.1:-68937289 | None:intergenic |
| TCAAAAGACACCACCACAGA+AGG | 0.591734 | 5.1:+68937056 | MS.gene99413:CDS |
| CGACCACAGGTCTTAAGAAG+TGG | 0.593414 | 5.1:+68937301 | MS.gene99413:CDS |
| ACAAAGTGGCGGAGAAAGTG+AGG | 0.597287 | 5.1:+68937124 | MS.gene99413:CDS |
| GGTCTTGGAGCTTCTTCTGG+CGG | 0.600665 | 5.1:-68936931 | None:intergenic |
| GAGCAAAAGGGTGCTCAAGA+GGG | 0.603253 | 5.1:+68936979 | MS.gene99413:CDS |
| CTTCCACTTCTTAAGACCTG+TGG | 0.604468 | 5.1:-68937304 | None:intergenic |
| ACGACGCCATCTGTTCTGAA+AGG | 0.621474 | 5.1:-68936563 | None:intergenic |
| AGAAGAAGCTCCAAGACCAA+AGG | 0.632632 | 5.1:+68936936 | MS.gene99413:CDS |
| AGAAGCTAGCATAGACAAAG+TGG | 0.640905 | 5.1:+68937110 | MS.gene99413:CDS |
| AGAAGCTGCTCCAAGACCAA+AGG | 0.649599 | 5.1:+68936714 | MS.gene99413:CDS |
| CTGTCCGTGTCATAATCAGA+AGG | 0.662264 | 5.1:-68936607 | None:intergenic |
| AGCTAGCATAGACAAAGTGG+CGG | 0.665250 | 5.1:+68937113 | MS.gene99413:CDS |
| GTGACTGCGACATTTGAGGG+TGG | 0.759268 | 5.1:+68936631 | MS.gene99413:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAAAAAAATGTATATTATT+TGG | - | chr5.1:68936329-68936348 | None:intergenic | 10.0% |
| !!! | TAATTCAAATTTTTATATCT+TGG | + | chr5.1:68936274-68936293 | MS.gene99413:intron | 10.0% |
| !! | TCAAATTAATGAAAAACAAA+GGG | - | chr5.1:68936403-68936422 | None:intergenic | 15.0% |
| !! | TTCAAATTAATGAAAAACAA+AGG | - | chr5.1:68936404-68936423 | None:intergenic | 15.0% |
| !!! | AGTATATAGTTTGTATTTTT+TGG | - | chr5.1:68936457-68936476 | None:intergenic | 15.0% |
| !!! | ATATACATTTTTTTACTGTA+AGG | + | chr5.1:68936333-68936352 | MS.gene99413:intron | 15.0% |
| !!! | TTTGTTTTTCATTAATTTGA+AGG | + | chr5.1:68936403-68936422 | MS.gene99413:intron | 15.0% |
| !! | AATTTGAATTAACATTTACC+TGG | - | chr5.1:68936265-68936284 | None:intergenic | 20.0% |
| !! | ATAGTTGTTTATGAGTTATT+TGG | - | chr5.1:68936364-68936383 | None:intergenic | 20.0% |
| !! | CTTTATTGTAGAAATACATT+TGG | + | chr5.1:68937375-68937394 | MS.gene99413:CDS | 20.0% |
| ! | TATATACTTTCTTAACATGC+AGG | + | chr5.1:68936469-68936488 | MS.gene99413:intron | 25.0% |
| ! | TATTTATCCCATTCATGATA+TGG | - | chr5.1:68936217-68936236 | None:intergenic | 25.0% |
| !! | AAACAAAGGGCTTTTAAATA+TGG | - | chr5.1:68936390-68936409 | None:intergenic | 25.0% |
| ACTTTGAACCATATCATGAA+TGG | + | chr5.1:68936206-68936225 | MS.gene99413:CDS | 30.0% | |
| AGAAGAGAAAGTAGAAACAA+AGG | + | chr5.1:68936783-68936802 | MS.gene99413:CDS | 30.0% | |
| ATATAGAAGGGATCAAATGA+AGG | + | chr5.1:68936492-68936511 | MS.gene99413:CDS | 30.0% | |
| ATGTGTCATGCTAATCTTAT+TGG | + | chr5.1:68937338-68937357 | MS.gene99413:CDS | 30.0% | |
| CATGAATGGGATAAATATGA+TGG | + | chr5.1:68936220-68936239 | MS.gene99413:CDS | 30.0% | |
| CTTTGAACCATATCATGAAT+GGG | + | chr5.1:68936207-68936226 | MS.gene99413:CDS | 30.0% | |
| TGCTAAACTTACTAATCCTA+AGG | + | chr5.1:68936672-68936691 | MS.gene99413:CDS | 30.0% | |
| TTAACATGCAGGATATAGAA+GGG | + | chr5.1:68936480-68936499 | MS.gene99413:intron | 30.0% | |
| TTTGCATCTAGCAATAAACT+TGG | - | chr5.1:68937211-68937230 | None:intergenic | 30.0% | |
| ! | CTTTCTCTTCTATAGCTTTT+GGG | - | chr5.1:68937008-68937027 | None:intergenic | 30.0% |
| ! | TTTCTCTTCTATAGCTTTTG+GGG | - | chr5.1:68937007-68937026 | None:intergenic | 30.0% |
| !!! | ACTTTCTCTTCTTTAGCTTT+TGG | - | chr5.1:68936775-68936794 | None:intergenic | 30.0% |
| !!! | CTTTCTCTTCTTTAGCTTTT+GGG | - | chr5.1:68936774-68936793 | None:intergenic | 30.0% |
| !!! | TTTCTCTTCTTTAGCTTTTG+GGG | - | chr5.1:68936773-68936792 | None:intergenic | 30.0% |
| AAATACATTTGGATCGTCTC+AGG | + | chr5.1:68937386-68937405 | MS.gene99413:CDS | 35.0% | |
| AATACATTTGGATCGTCTCA+GGG | + | chr5.1:68937387-68937406 | MS.gene99413:CDS | 35.0% | |
| AGAAGAGAAAGCAGAAACAA+AGG | + | chr5.1:68936894-68936913 | MS.gene99413:CDS | 35.0% | |
| AGCAATAAACTTGGCATCTT+TGG | - | chr5.1:68937202-68937221 | None:intergenic | 35.0% | |
| ATGCTAATCTTATTGGTCGT+GGG | + | chr5.1:68937345-68937364 | MS.gene99413:CDS | 35.0% | |
| ATTGTATCATTCTCCTTCTG+TGG | - | chr5.1:68937072-68937091 | None:intergenic | 35.0% | |
| CATTCCTTCTGATTATGACA+CGG | + | chr5.1:68936603-68936622 | MS.gene99413:CDS | 35.0% | |
| CTTAACATGCAGGATATAGA+AGG | + | chr5.1:68936479-68936498 | MS.gene99413:intron | 35.0% | |
| GTGTCATAATCAGAAGGAAT+GGG | - | chr5.1:68936604-68936623 | None:intergenic | 35.0% | |
| TCTTAAGAAGTGGAAGAGAT+TGG | + | chr5.1:68937311-68937330 | MS.gene99413:CDS | 35.0% | |
| TGTAGATTTCACTCTCTCTA+AGG | + | chr5.1:68937239-68937258 | MS.gene99413:CDS | 35.0% | |
| TTATTGCTAGATGCAAAACC+AGG | + | chr5.1:68937214-68937233 | MS.gene99413:CDS | 35.0% | |
| ! | CAAAACGTTGATGAGCAAAA+GGG | + | chr5.1:68936856-68936875 | MS.gene99413:CDS | 35.0% |
| ! | GCTTTCTCTTCTATAGCTTT+TGG | - | chr5.1:68937009-68937028 | None:intergenic | 35.0% |
| !! | ACAAAAGGTTGATGAGCAAA+AGG | + | chr5.1:68936744-68936763 | MS.gene99413:CDS | 35.0% |
| !! | CAAAAGGTTGATGAGCAAAA+GGG | + | chr5.1:68936745-68936764 | MS.gene99413:CDS | 35.0% |
| !! | GGATTTGTTGTTGTTTCCTT+AGG | - | chr5.1:68936691-68936710 | None:intergenic | 35.0% |
| !!! | AACTTGGCATCTTTGGTTTT+AGG | - | chr5.1:68937195-68937214 | None:intergenic | 35.0% |
| !!! | GCTTTCTCTTCTTTAGCTTT+TGG | - | chr5.1:68936886-68936905 | None:intergenic | 35.0% |
| ACAAAAGGCTGATGAGCAAA+AGG | + | chr5.1:68936966-68936985 | MS.gene99413:CDS | 40.0% | |
| ACCAAAGGAACCATCACAAA+AGG | + | chr5.1:68936729-68936748 | MS.gene99413:CDS | 40.0% | |
| AGAAGAAGCTCCAAGACTAA+AGG | + | chr5.1:68936825-68936844 | MS.gene99413:CDS | 40.0% | |
| AGAAGCTAGCATAGACAAAG+TGG | + | chr5.1:68937110-68937129 | MS.gene99413:CDS | 40.0% | |
| CAAAAGGCTGATGAGCAAAA+GGG | + | chr5.1:68936967-68936986 | MS.gene99413:CDS | 40.0% | |
| CATGCTAATCTTATTGGTCG+TGG | + | chr5.1:68937344-68937363 | MS.gene99413:CDS | 40.0% | |
| CGTGTCATAATCAGAAGGAA+TGG | - | chr5.1:68936605-68936624 | None:intergenic | 40.0% | |
| TCTTTCACCTATCAGCCTTA+GGG | - | chr5.1:68936539-68936558 | None:intergenic | 40.0% | |
| ! | ACCTTTTGTGATGGTTCCTT+TGG | - | chr5.1:68936733-68936752 | None:intergenic | 40.0% |
| ! | AGCTTCTGTTCTGCTCTTTT+CGG | - | chr5.1:68937097-68937116 | None:intergenic | 40.0% |
| ! | GCAAAACGTTGATGAGCAAA+AGG | + | chr5.1:68936855-68936874 | MS.gene99413:CDS | 40.0% |
| ! | TGCTCATCAACCTTTTGTGA+TGG | - | chr5.1:68936742-68936761 | None:intergenic | 40.0% |
| ! | TTTTGCTCATCAGCCTTTTG+TGG | - | chr5.1:68936967-68936986 | None:intergenic | 40.0% |
| !! | TTTAGTCTTGGAGCTTCTTC+TGG | - | chr5.1:68936826-68936845 | None:intergenic | 40.0% |
| ACCAAAGGAATCGCCACAAA+AGG | + | chr5.1:68936951-68936970 | MS.gene99413:CDS | 45.0% | |
| ACCTGTGGTCGAATTTCCAA+GGG | - | chr5.1:68937292-68937311 | None:intergenic | 45.0% | |
| AGAAGAAGCTCCAAGACCAA+AGG | + | chr5.1:68936936-68936955 | MS.gene99413:CDS | 45.0% | |
| AGCTAGCATAGACAAAGTGG+CGG | + | chr5.1:68937113-68937132 | MS.gene99413:CDS | 45.0% | |
| AGTGTGACTGCGACATTTGA+GGG | + | chr5.1:68936628-68936647 | MS.gene99413:CDS | 45.0% | |
| ATCTTATTGGTCGTGGGACT+TGG | + | chr5.1:68937351-68937370 | MS.gene99413:CDS | 45.0% | |
| CAGGATGAAAATGAAGCCCT+TGG | + | chr5.1:68937273-68937292 | MS.gene99413:CDS | 45.0% | |
| CTGGTAGCATGACAGTGAAA+CGG | - | chr5.1:68936246-68936265 | None:intergenic | 45.0% | |
| CTGTCCGTGTCATAATCAGA+AGG | - | chr5.1:68936610-68936629 | None:intergenic | 45.0% | |
| CTTCCACTTCTTAAGACCTG+TGG | - | chr5.1:68937307-68937326 | None:intergenic | 45.0% | |
| GACCAACCTTTCAGAACAGA+TGG | + | chr5.1:68936557-68936576 | MS.gene99413:CDS | 45.0% | |
| GAGAGTGAAATCTACAAGCC+TGG | - | chr5.1:68937235-68937254 | None:intergenic | 45.0% | |
| GTATCATTCTCCTTCTGTGG+TGG | - | chr5.1:68937069-68937088 | None:intergenic | 45.0% | |
| GTCTTTCACCTATCAGCCTT+AGG | - | chr5.1:68936540-68936559 | None:intergenic | 45.0% | |
| TCAAAAGACACCACCACAGA+AGG | + | chr5.1:68937056-68937075 | MS.gene99413:CDS | 45.0% | |
| TCATAGACACGATCAGCTTC+TGG | - | chr5.1:68936184-68936203 | None:intergenic | 45.0% | |
| TCTTATTGGTCGTGGGACTT+GGG | + | chr5.1:68937352-68937371 | MS.gene99413:CDS | 45.0% | |
| TGCGATGGTTCCTTTAGTCT+TGG | - | chr5.1:68936838-68936857 | None:intergenic | 45.0% | |
| TGTGATGGTTCCTTTGGTCT+TGG | - | chr5.1:68936727-68936746 | None:intergenic | 45.0% | |
| ! | TGCTCATCAACGTTTTGCGA+TGG | - | chr5.1:68936853-68936872 | None:intergenic | 45.0% |
| !! | CTCTAAGGCTCTCTGTAATC+AGG | + | chr5.1:68937254-68937273 | MS.gene99413:CDS | 45.0% |
| !! | TTTGGTCTTGGAGCTTCTTC+TGG | - | chr5.1:68936937-68936956 | None:intergenic | 45.0% |
| !! | TAAAAAAATGTATATTATTT+GGG | - | chr5.1:68936328-68936347 | None:intergenic | 5.0% |
| AAACCTGCCCTAAGGCTGAT+AGG | + | chr5.1:68936529-68936548 | MS.gene99413:CDS | 50.0% | |
| AGAAGCTGCTCCAAGACCAA+AGG | + | chr5.1:68936714-68936733 | MS.gene99413:CDS | 50.0% | |
| AGTCTTGGAGCTTCTTCTGG+TGG | - | chr5.1:68936823-68936842 | None:intergenic | 50.0% | |
| CAGTGTGACTGCGACATTTG+AGG | + | chr5.1:68936627-68936646 | MS.gene99413:CDS | 50.0% | |
| CGACCACAGGTCTTAAGAAG+TGG | + | chr5.1:68937301-68937320 | MS.gene99413:CDS | 50.0% | |
| CGTTTCACTGTCATGCTACC+AGG | + | chr5.1:68936244-68936263 | MS.gene99413:CDS | 50.0% | |
| GACCTGTGGTCGAATTTCCA+AGG | - | chr5.1:68937293-68937312 | None:intergenic | 50.0% | |
| GCGGAGAAAGTGAGGACTAA+TGG | + | chr5.1:68937132-68937151 | MS.gene99413:CDS | 50.0% | |
| TGACCTCAAAACCTGCCCTA+AGG | + | chr5.1:68936521-68936540 | MS.gene99413:CDS | 50.0% | |
| TGGATCGTCTCAGGGAGAAT+TGG | + | chr5.1:68937395-68937414 | MS.gene99413:CDS | 50.0% | |
| TGTGGCGATTCCTTTGGTCT+TGG | - | chr5.1:68936949-68936968 | None:intergenic | 50.0% | |
| ! | ACAAAGTGGCGGAGAAAGTG+AGG | + | chr5.1:68937124-68937143 | MS.gene99413:CDS | 50.0% |
| ! | ACGACGCCATCTGTTCTGAA+AGG | - | chr5.1:68936566-68936585 | None:intergenic | 50.0% |
| ! | GCCTTTTGTGGCGATTCCTT+TGG | - | chr5.1:68936955-68936974 | None:intergenic | 50.0% |
| !! | CGCCATCTGTTCTGAAAGGT+TGG | - | chr5.1:68936562-68936581 | None:intergenic | 50.0% |
| !! | GAGCAAAAGGGTGCTCAAGA+GGG | + | chr5.1:68936979-68936998 | MS.gene99413:CDS | 50.0% |
| !! | TGAGCAAAAGGGTGCTCAAG+AGG | + | chr5.1:68936978-68936997 | MS.gene99413:CDS | 50.0% |
| !! | TTTGGTCTTGGAGCAGCTTC+TGG | - | chr5.1:68936715-68936734 | None:intergenic | 50.0% |
| GCCCTTGGAAATTCGACCAC+AGG | + | chr5.1:68937288-68937307 | MS.gene99413:CDS | 55.0% | |
| GGTCTTGGAGCTTCTTCTGG+CGG | - | chr5.1:68936934-68936953 | None:intergenic | 55.0% | |
| GTGACTGCGACATTTGAGGG+TGG | + | chr5.1:68936631-68936650 | MS.gene99413:CDS | 55.0% | |
| TCACCTATCAGCCTTAGGGC+AGG | - | chr5.1:68936535-68936554 | None:intergenic | 55.0% | |
| ! | CAGCCTTAGGGCAGGTTTTG+AGG | - | chr5.1:68936527-68936546 | None:intergenic | 55.0% |
| GGTCTTGGAGCAGCTTCTGG+TGG | - | chr5.1:68936712-68936731 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 68936163 | 68937449 | 68936163 | ID=MS.gene99413 |
| chr5.1 | mRNA | 68936163 | 68937449 | 68936163 | ID=MS.gene99413.t1;Parent=MS.gene99413 |
| chr5.1 | exon | 68936163 | 68936265 | 68936163 | ID=MS.gene99413.t1.exon1;Parent=MS.gene99413.t1 |
| chr5.1 | CDS | 68936163 | 68936265 | 68936163 | ID=cds.MS.gene99413.t1;Parent=MS.gene99413.t1 |
| chr5.1 | exon | 68936491 | 68937449 | 68936491 | ID=MS.gene99413.t1.exon2;Parent=MS.gene99413.t1 |
| chr5.1 | CDS | 68936491 | 68937449 | 68936491 | ID=cds.MS.gene99413.t1;Parent=MS.gene99413.t1 |
| Gene Sequence |
| Protein sequence |
