Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99583.t1 | XP_003629056.1 | 98.3 | 583 | 7 | 1 | 1 | 580 | 1 | 583 | 6.50E-290 | 1006.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99583.t1 | P48021 | 71.0 | 555 | 132 | 6 | 42 | 580 | 52 | 593 | 2.9e-206 | 719.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99583.t1 | A9YVC5 | 98.3 | 583 | 7 | 1 | 1 | 580 | 1 | 583 | 4.7e-290 | 1006.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052702 | MS.gene99583 | 0.844419 | 7.65E-59 | -1.69E-46 |
| MS.gene054884 | MS.gene99583 | 0.831737 | 1.41E-55 | -1.69E-46 |
| MS.gene056697 | MS.gene99583 | 0.850479 | 1.65E-60 | -1.69E-46 |
| MS.gene058184 | MS.gene99583 | 0.843334 | 1.49E-58 | -1.69E-46 |
| MS.gene058235 | MS.gene99583 | 0.80789 | 4.05E-50 | -1.69E-46 |
| MS.gene05926 | MS.gene99583 | 0.841794 | 3.83E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99583.t1 | MTR_8g072640 | 98.285 | 583 | 7 | 1 | 1 | 580 | 1 | 583 | 0.0 | 1167 |
| MS.gene99583.t1 | MTR_5g024880 | 77.184 | 561 | 110 | 5 | 28 | 580 | 17 | 567 | 0.0 | 874 |
| MS.gene99583.t1 | MTR_5g091050 | 74.655 | 580 | 112 | 6 | 1 | 580 | 1 | 545 | 0.0 | 864 |
| MS.gene99583.t1 | MTR_5g026500 | 78.558 | 541 | 94 | 4 | 42 | 580 | 30 | 550 | 0.0 | 859 |
| MS.gene99583.t1 | MTR_5g026450 | 77.390 | 544 | 101 | 3 | 37 | 580 | 21 | 542 | 0.0 | 856 |
| MS.gene99583.t1 | MTR_5g026460 | 77.390 | 544 | 101 | 3 | 37 | 580 | 21 | 542 | 0.0 | 856 |
| MS.gene99583.t1 | MTR_5g026430 | 77.390 | 544 | 101 | 3 | 37 | 580 | 21 | 542 | 0.0 | 856 |
| MS.gene99583.t1 | MTR_5g026480 | 77.390 | 544 | 101 | 3 | 37 | 580 | 21 | 542 | 0.0 | 856 |
| MS.gene99583.t1 | MTR_5g087550 | 69.257 | 592 | 143 | 6 | 1 | 580 | 1 | 565 | 0.0 | 794 |
| MS.gene99583.t1 | MTR_5g024880 | 75.311 | 482 | 101 | 5 | 28 | 501 | 17 | 488 | 0.0 | 733 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99583.t1 | AT1G76490 | 69.748 | 595 | 148 | 6 | 1 | 576 | 51 | 632 | 0.0 | 820 |
| MS.gene99583.t1 | AT2G17370 | 71.322 | 537 | 132 | 6 | 42 | 575 | 37 | 554 | 0.0 | 761 |
Find 164 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCTCCGCCGTTTACCTTCT+AGG | 0.154239 | 8.3:+29728433 | MS.gene99583:CDS |
| TGTAAAGCTATTCATGTTTC+TGG | 0.186633 | 8.3:+29728973 | MS.gene99583:CDS |
| TGGTGGTGGTGGTAAGCTTC+TGG | 0.194075 | 8.3:-29728234 | None:intergenic |
| TTTCGATTACGATTCGATAT+TGG | 0.207910 | 8.3:+29728813 | MS.gene99583:CDS |
| GCAAGCTCACGAAACGATTT+TGG | 0.210048 | 8.3:-29731240 | None:intergenic |
| CAAATTCCGGTTGGTGTTGC+GGG | 0.266196 | 8.3:+29728868 | MS.gene99583:CDS |
| TTCGATTACGATTCGATATT+GGG | 0.270716 | 8.3:+29728814 | MS.gene99583:CDS |
| TCAGCGGTGCAAACGATAAC+TGG | 0.306795 | 8.3:+29728760 | MS.gene99583:CDS |
| TCAGCCCTTGCTGGTGCTCT+TGG | 0.329249 | 8.3:+29730542 | MS.gene99583:CDS |
| TTTGCAATTTCCTCGTCTTC+CGG | 0.344235 | 8.3:-29728655 | None:intergenic |
| AGAAAGCGGCAGCTGTAAAC+TGG | 0.347224 | 8.3:+29730396 | MS.gene99583:CDS |
| TCTTAATTTACTTGGTGTTA+AGG | 0.349199 | 8.3:+29731061 | MS.gene99583:CDS |
| AGCATTCAGCCTACAATTGC+TGG | 0.351295 | 8.3:+29730095 | MS.gene99583:CDS |
| GATAGGGTTTGTTCAAATTC+CGG | 0.351442 | 8.3:+29728855 | MS.gene99583:CDS |
| GTCTGCTAGTCTAGATTCTA+AGG | 0.353093 | 8.3:-29728710 | None:intergenic |
| TGACTAGAGCACCTGTTGTT+AGG | 0.353746 | 8.3:+29729028 | MS.gene99583:CDS |
| AATAGCTTTACACCCTCTAT+TGG | 0.356892 | 8.3:-29728962 | None:intergenic |
| CTTAATTTACTTGGTGTTAA+GGG | 0.362558 | 8.3:+29731062 | MS.gene99583:CDS |
| GGTGGTGGTGGTAAGCTTCT+GGG | 0.366246 | 8.3:-29728233 | None:intergenic |
| GACGTATTGCCGCCGCTTTA+CGG | 0.366700 | 8.3:-29728735 | None:intergenic |
| AAATTCTTGCCAGCAATTGT+AGG | 0.370194 | 8.3:-29730104 | None:intergenic |
| CTTCTAGGTTTCTTCGGTAT+CGG | 0.393361 | 8.3:+29728448 | MS.gene99583:CDS |
| CCCTTGCTGGTGCTCTTGGT+GGG | 0.400026 | 8.3:+29730546 | MS.gene99583:CDS |
| AACATGCTTAAGAACCTAAC+TGG | 0.404216 | 8.3:+29730518 | MS.gene99583:CDS |
| ACAATTGGAGTTACCGTTGC+CGG | 0.405265 | 8.3:-29728586 | None:intergenic |
| ATTCGATTCCGTTGCAGTAC+TGG | 0.409002 | 8.3:+29730131 | MS.gene99583:CDS |
| TACAGCTGCCGCTTTCTTGT+CGG | 0.410250 | 8.3:-29730390 | None:intergenic |
| GCCCTTGCTGGTGCTCTTGG+TGG | 0.414829 | 8.3:+29730545 | MS.gene99583:CDS |
| CGGATCACGAACTTCCTTCC+CGG | 0.424473 | 8.3:+29728468 | MS.gene99583:CDS |
| CTAACTGGATCAGCCCTTGC+TGG | 0.430519 | 8.3:+29730533 | MS.gene99583:CDS |
| GTCACTAACGCTGTATTCTT+CGG | 0.431080 | 8.3:+29728295 | MS.gene99583:CDS |
| ATCTTCACCGGAGCTACAAT+TGG | 0.432713 | 8.3:-29728601 | None:intergenic |
| CACCGACGTAAAACCACAAC+CGG | 0.432895 | 8.3:+29728567 | MS.gene99583:CDS |
| GGAGTTACCGTTGCCGGTTG+TGG | 0.433902 | 8.3:-29728580 | None:intergenic |
| AAGGTCTTTGCCATCATTCA+CGG | 0.434392 | 8.3:-29730672 | None:intergenic |
| ATAACTGGAAAATCTCTAGA+AGG | 0.440221 | 8.3:+29728775 | MS.gene99583:CDS |
| ATGGATGTCATTGGAATCTC+AGG | 0.445773 | 8.3:+29730230 | MS.gene99583:CDS |
| TCAGCTTGTCTTAATTTACT+TGG | 0.448427 | 8.3:+29731053 | MS.gene99583:CDS |
| GTTTACCTTCTAGGTTTCTT+CGG | 0.453882 | 8.3:+29728442 | MS.gene99583:CDS |
| GCAGCTGTAAACTGGATTGA+AGG | 0.457544 | 8.3:+29730404 | MS.gene99583:CDS |
| CAGCAAGGGCTGATCCAGTT+AGG | 0.457590 | 8.3:-29730532 | None:intergenic |
| CTCATGTCTGCAATTGCAGC+TGG | 0.470089 | 8.3:+29731167 | MS.gene99583:CDS |
| TCTTCTGTGTTGCTTAGAGA+TGG | 0.473694 | 8.3:+29729003 | MS.gene99583:CDS |
| TCTTCGTCGGAGAGATCATC+CGG | 0.475439 | 8.3:-29728487 | None:intergenic |
| ATTCCAATGACATCCATGTC+AGG | 0.476477 | 8.3:-29730224 | None:intergenic |
| AGTGGACCCGCAACACCAAC+CGG | 0.478518 | 8.3:-29728874 | None:intergenic |
| AGTGCTGCTGGACACGGTCC+TGG | 0.480294 | 8.3:-29728538 | None:intergenic |
| TCAAATTCCGGTTGGTGTTG+CGG | 0.481667 | 8.3:+29728867 | MS.gene99583:CDS |
| CACTAATTTCTGTACCTCAA+TGG | 0.486090 | 8.3:-29730717 | None:intergenic |
| TCTTCTCGCGCCAACGGTGG+AGG | 0.486592 | 8.3:-29728345 | None:intergenic |
| TCAGGTTGGTACTGTGGGAG+GGG | 0.488097 | 8.3:+29731010 | MS.gene99583:intron |
| ATCTCTAGAAGGTTTACCAT+TGG | 0.489315 | 8.3:+29728786 | MS.gene99583:CDS |
| ATAATTCAGGTTGGTACTGT+GGG | 0.489921 | 8.3:+29731005 | MS.gene99583:intron |
| TTCCCTGACATGGATGTCAT+TGG | 0.494706 | 8.3:+29730221 | MS.gene99583:CDS |
| TGCACCTGGAGATTCTGTGC+TGG | 0.497072 | 8.3:-29731087 | None:intergenic |
| AGGTGCAAATGCTAGGCTAT+TGG | 0.497308 | 8.3:+29731103 | MS.gene99583:CDS |
| CGATACCGAAGAAACCTAGA+AGG | 0.505448 | 8.3:-29728447 | None:intergenic |
| GAAGAAACCTAGAAGGTAAA+CGG | 0.508337 | 8.3:-29728440 | None:intergenic |
| GCCGACGAAAACCTAACAAC+AGG | 0.509711 | 8.3:-29729039 | None:intergenic |
| ATCATTCACGGGTTCCATCA+TGG | 0.517111 | 8.3:-29730660 | None:intergenic |
| TGTCACCATGCCTTCCATTG+AGG | 0.519547 | 8.3:+29730703 | MS.gene99583:CDS |
| GGTGTGTGAGGCTGTTATTA+AGG | 0.520587 | 8.3:+29730442 | MS.gene99583:CDS |
| CTAGAAGGTTTACCATTGGA+AGG | 0.521102 | 8.3:+29728790 | MS.gene99583:CDS |
| TCGGTGTCGACAAGTGCTGC+TGG | 0.521714 | 8.3:-29728550 | None:intergenic |
| GGAATACGACGGAATTGAAC+CGG | 0.526078 | 8.3:-29728689 | None:intergenic |
| TGTTGCGGGTCCACTGTTGT+TGG | 0.526588 | 8.3:+29728882 | MS.gene99583:CDS |
| GAACTCTCAACATTCTGAGC+AGG | 0.528481 | 8.3:-29730626 | None:intergenic |
| GGTAACTCCAATTGTAGCTC+CGG | 0.530278 | 8.3:+29728594 | MS.gene99583:CDS |
| TGCAGTACTGGTGATGCCAT+GGG | 0.530758 | 8.3:+29730143 | MS.gene99583:CDS |
| AATCTCCAGGTGCAAATGCT+AGG | 0.530949 | 8.3:+29731096 | MS.gene99583:CDS |
| ACCTAGAAGGTAAACGGCGG+AGG | 0.531795 | 8.3:-29728434 | None:intergenic |
| TGTCTACATAGCCACTGGTC+AGG | 0.531826 | 8.3:+29730601 | MS.gene99583:CDS |
| TACGGATCTTCTCGCGCCAA+CGG | 0.532788 | 8.3:-29728351 | None:intergenic |
| GAAGACTAGTGTGGAGGCAC+TGG | 0.533947 | 8.3:+29730487 | MS.gene99583:CDS |
| AGGTCTTTGCCATCATTCAC+GGG | 0.539685 | 8.3:-29730671 | None:intergenic |
| GGCGCCAGCACAGAATCTCC+AGG | 0.540230 | 8.3:+29731083 | MS.gene99583:CDS |
| TCACCGCCGGCGGGAGAACG+TGG | 0.541209 | 8.3:-29728199 | None:intergenic |
| TCTTCCGGTGTGAGATTCAC+CGG | 0.542834 | 8.3:-29728640 | None:intergenic |
| CTCGCCCGCGAGTACTGAAC+CGG | 0.544649 | 8.3:-29731138 | None:intergenic |
| TGAAATACAACAGATCTAGC+AGG | 0.545624 | 8.3:+29731210 | MS.gene99583:CDS |
| TCGACAAGTGCTGCTGGACA+CGG | 0.546888 | 8.3:-29728544 | None:intergenic |
| GCGGGTCCACTGTTGTTGGA+TGG | 0.547013 | 8.3:+29728886 | MS.gene99583:CDS |
| TTCAGGTTGGTACTGTGGGA+GGG | 0.548296 | 8.3:+29731009 | MS.gene99583:intron |
| TTGCAGTACTGGTGATGCCA+TGG | 0.550722 | 8.3:+29730142 | MS.gene99583:CDS |
| TCAGAGTGACTTCCCTGACA+TGG | 0.551867 | 8.3:+29730211 | MS.gene99583:CDS |
| CAGTGTTGTGAGATGCCGAT+AGG | 0.552150 | 8.3:+29728838 | MS.gene99583:CDS |
| TTCTCACTGTATTACCATGA+TGG | 0.554608 | 8.3:+29730646 | MS.gene99583:CDS |
| TCTGCTGTCTACATAGCCAC+TGG | 0.555493 | 8.3:+29730596 | MS.gene99583:CDS |
| GGATCTTCTCGCGCCAACGG+TGG | 0.558078 | 8.3:-29728348 | None:intergenic |
| GAGACAGTGACGACATGAAG+AGG | 0.559712 | 8.3:-29728382 | None:intergenic |
| GTACCCATGGCTACCACTGA+AGG | 0.561001 | 8.3:+29728922 | MS.gene99583:CDS |
| CTATTGGCCACCATTGTAGC+CGG | 0.563412 | 8.3:+29731119 | MS.gene99583:CDS |
| CGTAAAACCACAACCGGCAA+CGG | 0.563493 | 8.3:+29728573 | MS.gene99583:CDS |
| ATTCAGGTTGGTACTGTGGG+AGG | 0.563884 | 8.3:+29731008 | MS.gene99583:intron |
| CTTCCTCCACGTTCTCCCGC+CGG | 0.565279 | 8.3:+29728193 | MS.gene99583:CDS |
| AATAATTCAGGTTGGTACTG+TGG | 0.566379 | 8.3:+29731004 | MS.gene99583:intron |
| ACACCCTTCAGTGGTAGCCA+TGG | 0.566660 | 8.3:-29728926 | None:intergenic |
| AAAGCTATTCATGTTTCTGG+TGG | 0.566843 | 8.3:+29728976 | MS.gene99583:CDS |
| TGACACCATGTTCATCCCCA+TGG | 0.567983 | 8.3:-29730159 | None:intergenic |
| AAGCTTACCACCACCACCAC+CGG | 0.569453 | 8.3:+29728238 | MS.gene99583:CDS |
| CAGGTTGGTACTGTGGGAGG+GGG | 0.569796 | 8.3:+29731011 | MS.gene99583:intron |
| ATGATGGAACCCGTGAATGA+TGG | 0.569819 | 8.3:+29730662 | MS.gene99583:CDS |
| AGTGTTGTGAGATGCCGATA+GGG | 0.570212 | 8.3:+29728839 | MS.gene99583:CDS |
| CCCACCAAGAGCACCAGCAA+GGG | 0.572086 | 8.3:-29730546 | None:intergenic |
| CAGCTGTAAACTGGATTGAA+GGG | 0.573658 | 8.3:+29730405 | MS.gene99583:CDS |
| CTGTACCTCAATGGAAGGCA+TGG | 0.573863 | 8.3:-29730708 | None:intergenic |
| ACAACTTCATAGATCTTCAC+CGG | 0.578120 | 8.3:-29728613 | None:intergenic |
| AATTTCTGTACCTCAATGGA+AGG | 0.582480 | 8.3:-29730713 | None:intergenic |
| ATTGCAAAATCAGTTGTCAC+CGG | 0.584238 | 8.3:+29728670 | MS.gene99583:CDS |
| GAGTACTGAACCGGCTACAA+TGG | 0.589672 | 8.3:-29731129 | None:intergenic |
| GAATCTCACACCGGAAGACG+AGG | 0.590710 | 8.3:+29728645 | MS.gene99583:CDS |
| GGCTGTTATTAAGGAAGAGG+TGG | 0.590912 | 8.3:+29730451 | MS.gene99583:CDS |
| AGCAGACTGCCGTAAAGCGG+CGG | 0.591467 | 8.3:+29728726 | MS.gene99583:CDS |
| AAAGAAGACTCTCGAAAACC+AGG | 0.593503 | 8.3:+29728520 | MS.gene99583:CDS |
| GAAAGTGTTGAAGACTAGTG+TGG | 0.595958 | 8.3:+29730478 | MS.gene99583:CDS |
| TGAGGCTGTTATTAAGGAAG+AGG | 0.596038 | 8.3:+29730448 | MS.gene99583:CDS |
| CTTGTTGCAAGTACCAATAG+AGG | 0.597773 | 8.3:+29728949 | MS.gene99583:CDS |
| GGGATGAACATGGTGTCAAA+AGG | 0.598387 | 8.3:+29730164 | MS.gene99583:CDS |
| CACCCTTCAGTGGTAGCCAT+GGG | 0.598933 | 8.3:-29728925 | None:intergenic |
| GGCGGCAATACGTCGTTCAG+CGG | 0.601502 | 8.3:+29728744 | MS.gene99583:CDS |
| TTTAGCGAGAATCTCTTCGT+CGG | 0.601897 | 8.3:-29728500 | None:intergenic |
| GGGTTTGTTCAAATTCCGGT+TGG | 0.602041 | 8.3:+29728859 | MS.gene99583:CDS |
| GGAATTTGAACAAACCCTAT+CGG | 0.606204 | 8.3:-29728853 | None:intergenic |
| TGTAGCCGGTTCAGTACTCG+CGG | 0.607917 | 8.3:+29731133 | MS.gene99583:CDS |
| GAGGAAGAGATTTAAGTCTC+CGG | 0.609171 | 8.3:-29728177 | None:intergenic |
| GCAAGTGTATCAAAATTAAG+CGG | 0.609171 | 8.3:-29729099 | None:intergenic |
| AGTCACTCTGAAGAAAATCA+AGG | 0.609778 | 8.3:-29730199 | None:intergenic |
| AATAGCCTAGCATTTGCACC+TGG | 0.614511 | 8.3:-29731101 | None:intergenic |
| TACCCATGGCTACCACTGAA+GGG | 0.614982 | 8.3:+29728923 | MS.gene99583:CDS |
| TACTGAACCGGCTACAATGG+TGG | 0.616136 | 8.3:-29731126 | None:intergenic |
| GTAAACTGGATTGAAGGGCG+TGG | 0.616240 | 8.3:+29730410 | MS.gene99583:CDS |
| TGATGCCATGGGGATGAACA+TGG | 0.618362 | 8.3:+29730154 | MS.gene99583:CDS |
| TTCCAATGACATCCATGTCA+GGG | 0.618523 | 8.3:-29730223 | None:intergenic |
| TTTCTGTTCCGACAAGAAAG+CGG | 0.619756 | 8.3:+29730382 | MS.gene99583:CDS |
| CCTCCACGTTCTCCCGCCGG+CGG | 0.627464 | 8.3:+29728196 | MS.gene99583:CDS |
| GCATGGTGACAGAAATGTGA+AGG | 0.628287 | 8.3:-29730691 | None:intergenic |
| GATCTATGAAGTTGTTGCAC+CGG | 0.629263 | 8.3:+29728621 | MS.gene99583:CDS |
| GAAATACAACAGATCTAGCA+GGG | 0.634441 | 8.3:+29731211 | MS.gene99583:CDS |
| ACCCACCAAGAGCACCAGCA+AGG | 0.640374 | 8.3:-29730547 | None:intergenic |
| TGGCATCACCAGTACTGCAA+CGG | 0.640383 | 8.3:-29730139 | None:intergenic |
| TCGTAATCGAAACCTTCCAA+TGG | 0.642272 | 8.3:-29728802 | None:intergenic |
| TGCAACAAGACACCCTTCAG+TGG | 0.643810 | 8.3:-29728935 | None:intergenic |
| TATAAGAGAAACGATGGCGG+CGG | 0.644367 | 8.3:-29728410 | None:intergenic |
| GTCGGAGAGATCATCCGGGA+AGG | 0.645591 | 8.3:-29728482 | None:intergenic |
| TGGTAAGTCTGTGGTGTGTG+AGG | 0.646294 | 8.3:+29730430 | MS.gene99583:CDS |
| TTGTTGCAAGTACCAATAGA+GGG | 0.651666 | 8.3:+29728950 | MS.gene99583:CDS |
| AGTTGAGTACACTGTACCCA+TGG | 0.653086 | 8.3:+29728909 | MS.gene99583:CDS |
| GGAGGCTATAAGAGAAACGA+TGG | 0.663583 | 8.3:-29728416 | None:intergenic |
| CATGAAGAGGAGTTTCCGTA+CGG | 0.667785 | 8.3:-29728369 | None:intergenic |
| CCGCCGGCGGGAGAACGTGG+AGG | 0.669997 | 8.3:-29728196 | None:intergenic |
| GGCTATAAGAGAAACGATGG+CGG | 0.673455 | 8.3:-29728413 | None:intergenic |
| TGAAGGGCGTGGTAAGTCTG+TGG | 0.674377 | 8.3:+29730421 | MS.gene99583:CDS |
| CTTCGTCGGAGAGATCATCC+GGG | 0.678047 | 8.3:-29728486 | None:intergenic |
| GTAGCCGGTTCAGTACTCGC+GGG | 0.680240 | 8.3:+29731134 | MS.gene99583:CDS |
| CTAGATTCTAAGGAATACGA+CGG | 0.686525 | 8.3:-29728700 | None:intergenic |
| TTGGCGCGAGAAGATCCGTA+CGG | 0.687150 | 8.3:+29728354 | MS.gene99583:CDS |
| TCAACTCCATCCAACAACAG+TGG | 0.690537 | 8.3:-29728892 | None:intergenic |
| CTGAGCAGGATCCTGACCAG+TGG | 0.691176 | 8.3:-29730612 | None:intergenic |
| ACTAGCAGACTGCCGTAAAG+CGG | 0.691614 | 8.3:+29728723 | MS.gene99583:CDS |
| AGTGTTGAAGACTAGTGTGG+AGG | 0.700194 | 8.3:+29730481 | MS.gene99583:CDS |
| GTGGAGGAGAAAATACGCGA+CGG | 0.712614 | 8.3:-29728329 | None:intergenic |
| GCAGTACTGGTGATGCCATG+GGG | 0.721193 | 8.3:+29730144 | MS.gene99583:CDS |
| TGCACCGGTGAATCTCACAC+CGG | 0.728332 | 8.3:+29728636 | MS.gene99583:CDS |
| GAAACCTAGAAGGTAAACGG+CGG | 0.781690 | 8.3:-29728437 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTAACAAAATTTAGATTT+TGG | - | chr8.3:29729687-29729706 | None:intergenic | 10.0% |
| !! | TATGTTTATTTAATTCCAAA+GGG | - | chr8.3:29730745-29730764 | None:intergenic | 15.0% |
| !! | TCATTCATTAACAATTTAAT+GGG | + | chr8.3:29730038-29730057 | MS.gene99583:intron | 15.0% |
| !! | TTATGTTTATTTAATTCCAA+AGG | - | chr8.3:29730746-29730765 | None:intergenic | 15.0% |
| !! | TTCATTCATTAACAATTTAA+TGG | + | chr8.3:29730037-29730056 | MS.gene99583:intron | 15.0% |
| !!! | AATTTTAAAATTTGAACCAA+CGG | - | chr8.3:29729539-29729558 | None:intergenic | 15.0% |
| !!! | ATCTAAATTTTGTTAAATCA+TGG | + | chr8.3:29729689-29729708 | MS.gene99583:intron | 15.0% |
| !!! | ATTTTATCTTGTAGAAAATT+AGG | + | chr8.3:29729467-29729486 | MS.gene99583:intron | 15.0% |
| !!! | TAGATTTTGTTTAATAATTC+AGG | + | chr8.3:29730992-29731011 | MS.gene99583:intron | 15.0% |
| !!! | TTCTGTTTTTAATAATTACT+GGG | + | chr8.3:29729979-29729998 | MS.gene99583:intron | 15.0% |
| !!! | TTTCTGTTTTTAATAATTAC+TGG | + | chr8.3:29729978-29729997 | MS.gene99583:intron | 15.0% |
| !!! | TTTTAGTAGTATTTTTCTTT+GGG | + | chr8.3:29729175-29729194 | MS.gene99583:intron | 15.0% |
| !!! | TTTTTAGTAGTATTTTTCTT+TGG | + | chr8.3:29729174-29729193 | MS.gene99583:intron | 15.0% |
| !! | AAGAAGAGATAAAATATGTT+TGG | + | chr8.3:29729610-29729629 | MS.gene99583:intron | 20.0% |
| !! | ATATTTATAAGCAAGTTTAG+GGG | + | chr8.3:29730910-29730929 | MS.gene99583:intron | 20.0% |
| !! | CATAGATATGAAATGATTTA+GGG | + | chr8.3:29729436-29729455 | MS.gene99583:intron | 20.0% |
| !! | CATATTTATAAGCAAGTTTA+GGG | + | chr8.3:29730909-29730928 | MS.gene99583:intron | 20.0% |
| !! | TATTAAACAAAATCTAGCTA+AGG | - | chr8.3:29730988-29731007 | None:intergenic | 20.0% |
| !! | TCATAGATATGAAATGATTT+AGG | + | chr8.3:29729435-29729454 | MS.gene99583:intron | 20.0% |
| !!! | TCTGTTTTTAATAATTACTG+GGG | + | chr8.3:29729980-29729999 | MS.gene99583:intron | 20.0% |
| !!! | TTTTGTTTAATAATTCAGGT+TGG | + | chr8.3:29730996-29731015 | MS.gene99583:intron | 20.0% |
| ! | AAACCATTCTATAAACCTTT+AGG | - | chr8.3:29729863-29729882 | None:intergenic | 25.0% |
| ! | AATAGGATCCAATTTATGAA+GGG | + | chr8.3:29729915-29729934 | MS.gene99583:intron | 25.0% |
| ! | AATTTATGTCTTTGATCCAA+CGG | + | chr8.3:29729555-29729574 | MS.gene99583:intron | 25.0% |
| ! | GCATATTTATAAGCAAGTTT+AGG | + | chr8.3:29730908-29730927 | MS.gene99583:intron | 25.0% |
| ! | TAACCTAAAGGTTTATAGAA+TGG | + | chr8.3:29729857-29729876 | MS.gene99583:intron | 25.0% |
| ! | TAGCTAAGGATACAATAAAA+TGG | - | chr8.3:29730974-29730993 | None:intergenic | 25.0% |
| ! | TTGTTCTTAGATTAACCTAA+AGG | + | chr8.3:29729845-29729864 | MS.gene99583:intron | 25.0% |
| !! | TTTTCTACTACATGTATGTT+TGG | - | chr8.3:29730817-29730836 | None:intergenic | 25.0% |
| !!! | CTTAATTTACTTGGTGTTAA+GGG | + | chr8.3:29731062-29731081 | MS.gene99583:CDS | 25.0% |
| !!! | TCTTAATTTACTTGGTGTTA+AGG | + | chr8.3:29731061-29731080 | MS.gene99583:CDS | 25.0% |
| AATTCAACCATAACAAGGAA+CGG | - | chr8.3:29730308-29730327 | None:intergenic | 30.0% | |
| ATAACTGGAAAATCTCTAGA+AGG | + | chr8.3:29728775-29728794 | MS.gene99583:CDS | 30.0% | |
| ATATCTATGAAGCACAGATA+CGG | - | chr8.3:29729425-29729444 | None:intergenic | 30.0% | |
| CAATAGGATCCAATTTATGA+AGG | + | chr8.3:29729914-29729933 | MS.gene99583:intron | 30.0% | |
| CTTTCAATTCAACCATAACA+AGG | - | chr8.3:29730313-29730332 | None:intergenic | 30.0% | |
| GCAAGTGTATCAAAATTAAG+CGG | - | chr8.3:29729102-29729121 | None:intergenic | 30.0% | |
| TCAGCTTGTCTTAATTTACT+TGG | + | chr8.3:29731053-29731072 | MS.gene99583:CDS | 30.0% | |
| TCTCAAATTATTAGCAGTGT+CGG | + | chr8.3:29729364-29729383 | MS.gene99583:intron | 30.0% | |
| TGATATGAAACTATGAAGCA+TGG | + | chr8.3:29729245-29729264 | MS.gene99583:intron | 30.0% | |
| TGTAAAGCTATTCATGTTTC+TGG | + | chr8.3:29728973-29728992 | MS.gene99583:CDS | 30.0% | |
| TTCGATTACGATTCGATATT+GGG | + | chr8.3:29728814-29728833 | MS.gene99583:CDS | 30.0% | |
| TTGAAAAAGAAAACCATGCT+CGG | - | chr8.3:29730872-29730891 | None:intergenic | 30.0% | |
| TTGGAGTTTCACAAAATCAT+GGG | - | chr8.3:29729668-29729687 | None:intergenic | 30.0% | |
| TTGGGTCATGAGTTATTATT+AGG | + | chr8.3:29729193-29729212 | MS.gene99583:intron | 30.0% | |
| TTTCGATTACGATTCGATAT+TGG | + | chr8.3:29728813-29728832 | MS.gene99583:CDS | 30.0% | |
| ! | AATGTTTTCATGCACACTAT+TGG | + | chr8.3:29730341-29730360 | MS.gene99583:intron | 30.0% |
| ! | TCTTGTAGAAAATTAGGTTG+AGG | + | chr8.3:29729473-29729492 | MS.gene99583:intron | 30.0% |
| ! | TGGGGTTGTTCATTTAAAAT+GGG | + | chr8.3:29729998-29730017 | MS.gene99583:intron | 30.0% |
| ! | TTTGGAGTTTCACAAAATCA+TGG | - | chr8.3:29729669-29729688 | None:intergenic | 30.0% |
| !! | CTTGTAGAAAATTAGGTTGA+GGG | + | chr8.3:29729474-29729493 | MS.gene99583:intron | 30.0% |
| AAAACAACTGTTTGTCGAAG+AGG | - | chr8.3:29729811-29729830 | None:intergenic | 35.0% | |
| AAATTCTTGCCAGCAATTGT+AGG | - | chr8.3:29730107-29730126 | None:intergenic | 35.0% | |
| AACATGCTTAAGAACCTAAC+TGG | + | chr8.3:29730518-29730537 | MS.gene99583:CDS | 35.0% | |
| AATTTCTGTACCTCAATGGA+AGG | - | chr8.3:29730716-29730735 | None:intergenic | 35.0% | |
| ACAACTTCATAGATCTTCAC+CGG | - | chr8.3:29728616-29728635 | None:intergenic | 35.0% | |
| ACTAACAATATCACGATGAG+TGG | - | chr8.3:29729715-29729734 | None:intergenic | 35.0% | |
| ATCATGTGTCAGTATCATGT+CGG | - | chr8.3:29729324-29729343 | None:intergenic | 35.0% | |
| ATTGCAAAATCAGTTGTCAC+CGG | + | chr8.3:29728670-29728689 | MS.gene99583:CDS | 35.0% | |
| CACTAATTTCTGTACCTCAA+TGG | - | chr8.3:29730720-29730739 | None:intergenic | 35.0% | |
| CATTGAGGTACAGAAATTAG+TGG | + | chr8.3:29730718-29730737 | MS.gene99583:intron | 35.0% | |
| CTGGGGTTGTTCATTTAAAA+TGG | + | chr8.3:29729997-29730016 | MS.gene99583:intron | 35.0% | |
| GAAATACAACAGATCTAGCA+GGG | + | chr8.3:29731211-29731230 | MS.gene99583:CDS | 35.0% | |
| GAAGAAACCTAGAAGGTAAA+CGG | - | chr8.3:29728443-29728462 | None:intergenic | 35.0% | |
| GGAATTTGAACAAACCCTAT+CGG | - | chr8.3:29728856-29728875 | None:intergenic | 35.0% | |
| GTTTACCTTCTAGGTTTCTT+CGG | + | chr8.3:29728442-29728461 | MS.gene99583:CDS | 35.0% | |
| TGAAATACAACAGATCTAGC+AGG | + | chr8.3:29731210-29731229 | MS.gene99583:CDS | 35.0% | |
| TGGAGTTTCACAAAATCATG+GGG | - | chr8.3:29729667-29729686 | None:intergenic | 35.0% | |
| TTAGGGGAGCTAAATTGAAA+GGG | + | chr8.3:29730926-29730945 | MS.gene99583:intron | 35.0% | |
| TTCTCACTGTATTACCATGA+TGG | + | chr8.3:29730646-29730665 | MS.gene99583:CDS | 35.0% | |
| TTGTTGCAAGTACCAATAGA+GGG | + | chr8.3:29728950-29728969 | MS.gene99583:CDS | 35.0% | |
| TTTAGGGGAGCTAAATTGAA+AGG | + | chr8.3:29730925-29730944 | MS.gene99583:intron | 35.0% | |
| ! | AATAGCTTTACACCCTCTAT+TGG | - | chr8.3:29728965-29728984 | None:intergenic | 35.0% |
| ! | AGTCACTCTGAAGAAAATCA+AGG | - | chr8.3:29730202-29730221 | None:intergenic | 35.0% |
| ! | ATCTCTAGAAGGTTTACCAT+TGG | + | chr8.3:29728786-29728805 | MS.gene99583:CDS | 35.0% |
| ! | CTAGATTCTAAGGAATACGA+CGG | - | chr8.3:29728703-29728722 | None:intergenic | 35.0% |
| ! | GATAGGGTTTGTTCAAATTC+CGG | + | chr8.3:29728855-29728874 | MS.gene99583:CDS | 35.0% |
| ! | TTTCATGCACACTATTGGTT+TGG | + | chr8.3:29730346-29730365 | MS.gene99583:intron | 35.0% |
| !! | AAAGCTATTCATGTTTCTGG+TGG | + | chr8.3:29728976-29728995 | MS.gene99583:CDS | 35.0% |
| !! | AATAATTCAGGTTGGTACTG+TGG | + | chr8.3:29731004-29731023 | MS.gene99583:intron | 35.0% |
| !! | AATTAGGTTGAGGGATTTGT+TGG | + | chr8.3:29729483-29729502 | MS.gene99583:intron | 35.0% |
| !! | ACAATTTAATGGGTTTGTGC+AGG | + | chr8.3:29730048-29730067 | MS.gene99583:intron | 35.0% |
| !! | ATAATTCAGGTTGGTACTGT+GGG | + | chr8.3:29731005-29731024 | MS.gene99583:intron | 35.0% |
| !! | TGAGGGATTTGTTGGTTAAA+TGG | + | chr8.3:29729491-29729510 | MS.gene99583:intron | 35.0% |
| !! | TGCTGAGTTGAAGTTTTTCT+TGG | + | chr8.3:29729071-29729090 | MS.gene99583:CDS | 35.0% |
| !!! | TATAGAATGGTTTTAGCCGT+TGG | + | chr8.3:29729870-29729889 | MS.gene99583:intron | 35.0% |
| AAAGAAGACTCTCGAAAACC+AGG | + | chr8.3:29728520-29728539 | MS.gene99583:CDS | 40.0% | |
| AAGGTCTTTGCCATCATTCA+CGG | - | chr8.3:29730675-29730694 | None:intergenic | 40.0% | |
| ACAGAAATTAGTGGTCCCTT+TGG | + | chr8.3:29730727-29730746 | MS.gene99583:intron | 40.0% | |
| AGAGGATCTACAATTAGTCG+TGG | + | chr8.3:29729783-29729802 | MS.gene99583:intron | 40.0% | |
| ATCCAATTTATGAAGGGACG+AGG | + | chr8.3:29729921-29729940 | MS.gene99583:intron | 40.0% | |
| ATGGATGTCATTGGAATCTC+AGG | + | chr8.3:29730230-29730249 | MS.gene99583:CDS | 40.0% | |
| ATTCCAATGACATCCATGTC+AGG | - | chr8.3:29730227-29730246 | None:intergenic | 40.0% | |
| CAGCTGTAAACTGGATTGAA+GGG | + | chr8.3:29730405-29730424 | MS.gene99583:CDS | 40.0% | |
| CTAGAAGGTTTACCATTGGA+AGG | + | chr8.3:29728790-29728809 | MS.gene99583:CDS | 40.0% | |
| CTTCTAGGTTTCTTCGGTAT+CGG | + | chr8.3:29728448-29728467 | MS.gene99583:CDS | 40.0% | |
| CTTGTTGCAAGTACCAATAG+AGG | + | chr8.3:29728949-29728968 | MS.gene99583:CDS | 40.0% | |
| GAGGAAGAGATTTAAGTCTC+CGG | - | chr8.3:29728180-29728199 | None:intergenic | 40.0% | |
| GATCTATGAAGTTGTTGCAC+CGG | + | chr8.3:29728621-29728640 | MS.gene99583:CDS | 40.0% | |
| GTCACTAACGCTGTATTCTT+CGG | + | chr8.3:29728295-29728314 | MS.gene99583:CDS | 40.0% | |
| GTTAGTGACGCAGAGAAAAA+CGG | - | chr8.3:29728284-29728303 | None:intergenic | 40.0% | |
| TAAAGAGGGACAATATGGAG+AGG | + | chr8.3:29729765-29729784 | MS.gene99583:intron | 40.0% | |
| TCGTAATCGAAACCTTCCAA+TGG | - | chr8.3:29728805-29728824 | None:intergenic | 40.0% | |
| TGAGGCTGTTATTAAGGAAG+AGG | + | chr8.3:29730448-29730467 | MS.gene99583:CDS | 40.0% | |
| TTCCAATGACATCCATGTCA+GGG | - | chr8.3:29730226-29730245 | None:intergenic | 40.0% | |
| TTTAGCGAGAATCTCTTCGT+CGG | - | chr8.3:29728503-29728522 | None:intergenic | 40.0% | |
| TTTCTGTTCCGACAAGAAAG+CGG | + | chr8.3:29730382-29730401 | MS.gene99583:CDS | 40.0% | |
| TTTGCAATTTCCTCGTCTTC+CGG | - | chr8.3:29728658-29728677 | None:intergenic | 40.0% | |
| ! | ACCTGTTGTTAGGTTTTCGT+CGG | + | chr8.3:29729038-29729057 | MS.gene99583:CDS | 40.0% |
| ! | GTCTGCTAGTCTAGATTCTA+AGG | - | chr8.3:29728713-29728732 | None:intergenic | 40.0% |
| !! | ACTATTGGTTTGGTTATGGC+AGG | + | chr8.3:29730356-29730375 | MS.gene99583:intron | 40.0% |
| !! | AGGAACGGTTCTAGGATTAA+TGG | - | chr8.3:29730293-29730312 | None:intergenic | 40.0% |
| !! | GAAAGTGTTGAAGACTAGTG+TGG | + | chr8.3:29730478-29730497 | MS.gene99583:CDS | 40.0% |
| !! | GCACACTATTGGTTTGGTTA+TGG | + | chr8.3:29730352-29730371 | MS.gene99583:intron | 40.0% |
| !! | TCTTCTGTGTTGCTTAGAGA+TGG | + | chr8.3:29729003-29729022 | MS.gene99583:CDS | 40.0% |
| AACATGGAGAGGGGATAAAG+AGG | + | chr8.3:29729750-29729769 | MS.gene99583:intron | 45.0% | |
| AATAGCCTAGCATTTGCACC+TGG | - | chr8.3:29731104-29731123 | None:intergenic | 45.0% | |
| AATCTCCAGGTGCAAATGCT+AGG | + | chr8.3:29731096-29731115 | MS.gene99583:CDS | 45.0% | |
| ACAATTGGAGTTACCGTTGC+CGG | - | chr8.3:29728589-29728608 | None:intergenic | 45.0% | |
| ACATGGAGAGGGGATAAAGA+GGG | + | chr8.3:29729751-29729770 | MS.gene99583:intron | 45.0% | |
| ACCATAACACGCCTAATCCA+AGG | - | chr8.3:29729276-29729295 | None:intergenic | 45.0% | |
| AGAAAACCATGCTCGGTAGT+TGG | - | chr8.3:29730865-29730884 | None:intergenic | 45.0% | |
| AGCATTCAGCCTACAATTGC+TGG | + | chr8.3:29730095-29730114 | MS.gene99583:CDS | 45.0% | |
| AGGTCTTTGCCATCATTCAC+GGG | - | chr8.3:29730674-29730693 | None:intergenic | 45.0% | |
| AGGTGCAAATGCTAGGCTAT+TGG | + | chr8.3:29731103-29731122 | MS.gene99583:CDS | 45.0% | |
| AGTGTTGTGAGATGCCGATA+GGG | + | chr8.3:29728839-29728858 | MS.gene99583:CDS | 45.0% | |
| AGTTGAGTACACTGTACCCA+TGG | + | chr8.3:29728909-29728928 | MS.gene99583:CDS | 45.0% | |
| ATCATTCACGGGTTCCATCA+TGG | - | chr8.3:29730663-29730682 | None:intergenic | 45.0% | |
| ATCTTCACCGGAGCTACAAT+TGG | - | chr8.3:29728604-29728623 | None:intergenic | 45.0% | |
| ATGAAGCACAGATACGGAGA+CGG | - | chr8.3:29729419-29729438 | None:intergenic | 45.0% | |
| ATGAAGGGACGAGGTCATAT+AGG | + | chr8.3:29729930-29729949 | MS.gene99583:intron | 45.0% | |
| ATTCGATTCCGTTGCAGTAC+TGG | + | chr8.3:29730131-29730150 | MS.gene99583:CDS | 45.0% | |
| CATGAAGAGGAGTTTCCGTA+CGG | - | chr8.3:29728372-29728391 | None:intergenic | 45.0% | |
| CCATAACAAGGAACGGTTCT+AGG | - | chr8.3:29730301-29730320 | None:intergenic | 45.0% | |
| CCTAGAACCGTTCCTTGTTA+TGG | + | chr8.3:29730298-29730317 | MS.gene99583:intron | 45.0% | |
| CGATACCGAAGAAACCTAGA+AGG | - | chr8.3:29728450-29728469 | None:intergenic | 45.0% | |
| CTTTATCCCCTCTCCATGTT+TGG | - | chr8.3:29729750-29729769 | None:intergenic | 45.0% | |
| GAAAAACGGTCTGTGAAGTG+AGG | - | chr8.3:29728270-29728289 | None:intergenic | 45.0% | |
| GAAACCTAGAAGGTAAACGG+CGG | - | chr8.3:29728440-29728459 | None:intergenic | 45.0% | |
| GAACTCTCAACATTCTGAGC+AGG | - | chr8.3:29730629-29730648 | None:intergenic | 45.0% | |
| GACCTCGTCCCTTCATAAAT+TGG | - | chr8.3:29729926-29729945 | None:intergenic | 45.0% | |
| GCAGCTGTAAACTGGATTGA+AGG | + | chr8.3:29730404-29730423 | MS.gene99583:CDS | 45.0% | |
| GCATGGTGACAGAAATGTGA+AGG | - | chr8.3:29730694-29730713 | None:intergenic | 45.0% | |
| GGAATACGACGGAATTGAAC+CGG | - | chr8.3:29728692-29728711 | None:intergenic | 45.0% | |
| GGAGGCTATAAGAGAAACGA+TGG | - | chr8.3:29728419-29728438 | None:intergenic | 45.0% | |
| GGCTATAAGAGAAACGATGG+CGG | - | chr8.3:29728416-29728435 | None:intergenic | 45.0% | |
| GGCTGTTATTAAGGAAGAGG+TGG | + | chr8.3:29730451-29730470 | MS.gene99583:CDS | 45.0% | |
| GGGGATAAAGAGGGACAATA+TGG | + | chr8.3:29729760-29729779 | MS.gene99583:intron | 45.0% | |
| GGTAACTCCAATTGTAGCTC+CGG | + | chr8.3:29728594-29728613 | MS.gene99583:CDS | 45.0% | |
| GGTGTGTGAGGCTGTTATTA+AGG | + | chr8.3:29730442-29730461 | MS.gene99583:CDS | 45.0% | |
| GTTAAATGGATCCCCTGCAA+GGG | + | chr8.3:29729505-29729524 | MS.gene99583:intron | 45.0% | |
| GTTTGGATTGATCGCGAGTT+TGG | + | chr8.3:29729627-29729646 | MS.gene99583:intron | 45.0% | |
| TATGAAGCATGGACACTCCT+TGG | + | chr8.3:29729256-29729275 | MS.gene99583:intron | 45.0% | |
| TCAACTCCATCCAACAACAG+TGG | - | chr8.3:29728895-29728914 | None:intergenic | 45.0% | |
| TCCATCTGCAACAACTCCAA+CGG | - | chr8.3:29729889-29729908 | None:intergenic | 45.0% | |
| TGATCCCTTGCAACGTTACT+GGG | - | chr8.3:29729581-29729600 | None:intergenic | 45.0% | |
| TTCCCTGACATGGATGTCAT+TGG | + | chr8.3:29730221-29730240 | MS.gene99583:CDS | 45.0% | |
| TTGATCCCTTGCAACGTTAC+TGG | - | chr8.3:29729582-29729601 | None:intergenic | 45.0% | |
| TTGCAGATGGAGAGGTCAAT+AGG | + | chr8.3:29729898-29729917 | MS.gene99583:intron | 45.0% | |
| ! | AGTGTTGAAGACTAGTGTGG+AGG | + | chr8.3:29730481-29730500 | MS.gene99583:CDS | 45.0% |
| ! | ATGATGGAACCCGTGAATGA+TGG | + | chr8.3:29730662-29730681 | MS.gene99583:CDS | 45.0% |
| ! | CTGTGAAGTGAGGTTTTCTC+CGG | - | chr8.3:29728260-29728279 | None:intergenic | 45.0% |
| ! | GGGATGAACATGGTGTCAAA+AGG | + | chr8.3:29730164-29730183 | MS.gene99583:CDS | 45.0% |
| ! | GGGTTTGTTCAAATTCCGGT+TGG | + | chr8.3:29728859-29728878 | MS.gene99583:CDS | 45.0% |
| ! | TATAAGAGAAACGATGGCGG+CGG | - | chr8.3:29728413-29728432 | None:intergenic | 45.0% |
| ! | TCCTTGGATTAGGCGTGTTA+TGG | + | chr8.3:29729272-29729291 | MS.gene99583:intron | 45.0% |
| ! | TGACTAGAGCACCTGTTGTT+AGG | + | chr8.3:29729028-29729047 | MS.gene99583:CDS | 45.0% |
| ! | TGGTAAGCTTCTGGGTTTTG+AGG | - | chr8.3:29728228-29728247 | None:intergenic | 45.0% |
| !! | TCAAATTCCGGTTGGTGTTG+CGG | + | chr8.3:29728867-29728886 | MS.gene99583:CDS | 45.0% |
| ACAGATACGGAGACGGACAT+TGG | - | chr8.3:29729412-29729431 | None:intergenic | 50.0% | |
| ACTAGCAGACTGCCGTAAAG+CGG | + | chr8.3:29728723-29728742 | MS.gene99583:CDS | 50.0% | |
| AGAAAGCGGCAGCTGTAAAC+TGG | + | chr8.3:29730396-29730415 | MS.gene99583:CDS | 50.0% | |
| CACCGACGTAAAACCACAAC+CGG | + | chr8.3:29728567-29728586 | MS.gene99583:CDS | 50.0% | |
| CAGTGTTGTGAGATGCCGAT+AGG | + | chr8.3:29728838-29728857 | MS.gene99583:CDS | 50.0% | |
| CGTAAAACCACAACCGGCAA+CGG | + | chr8.3:29728573-29728592 | MS.gene99583:CDS | 50.0% | |
| CTACAACCAACTACCGAGCA+TGG | + | chr8.3:29730856-29730875 | MS.gene99583:intron | 50.0% | |
| CTATTGGCCACCATTGTAGC+CGG | + | chr8.3:29731119-29731138 | MS.gene99583:CDS | 50.0% | |
| CTCATGTCTGCAATTGCAGC+TGG | + | chr8.3:29731167-29731186 | MS.gene99583:CDS | 50.0% | |
| CTGTACCTCAATGGAAGGCA+TGG | - | chr8.3:29730711-29730730 | None:intergenic | 50.0% | |
| GAGACAGTGACGACATGAAG+AGG | - | chr8.3:29728385-29728404 | None:intergenic | 50.0% | |
| GCATGGACACTCCTTGGATT+AGG | + | chr8.3:29729262-29729281 | MS.gene99583:intron | 50.0% | |
| GCCGACGAAAACCTAACAAC+AGG | - | chr8.3:29729042-29729061 | None:intergenic | 50.0% | |
| GGTTAAATGGATCCCCTGCA+AGG | + | chr8.3:29729504-29729523 | MS.gene99583:intron | 50.0% | |
| GTAAACTGGATTGAAGGGCG+TGG | + | chr8.3:29730410-29730429 | MS.gene99583:CDS | 50.0% | |
| GTGGAGGAGAAAATACGCGA+CGG | - | chr8.3:29728332-29728351 | None:intergenic | 50.0% | |
| TACCCATGGCTACCACTGAA+GGG | + | chr8.3:29728923-29728942 | MS.gene99583:CDS | 50.0% | |
| TACTGAACCGGCTACAATGG+TGG | - | chr8.3:29731129-29731148 | None:intergenic | 50.0% | |
| TCAGAGTGACTTCCCTGACA+TGG | + | chr8.3:29730211-29730230 | MS.gene99583:CDS | 50.0% | |
| TCAGCGGTGCAAACGATAAC+TGG | + | chr8.3:29728760-29728779 | MS.gene99583:CDS | 50.0% | |
| TCGCGAGTTTGGCAAAGTCA+CGG | + | chr8.3:29729638-29729657 | MS.gene99583:intron | 50.0% | |
| TCTGCTGTCTACATAGCCAC+TGG | + | chr8.3:29730596-29730615 | MS.gene99583:CDS | 50.0% | |
| TCTTCCGGTGTGAGATTCAC+CGG | - | chr8.3:29728643-29728662 | None:intergenic | 50.0% | |
| TCTTCGTCGGAGAGATCATC+CGG | - | chr8.3:29728490-29728509 | None:intergenic | 50.0% | |
| TGACACCATGTTCATCCCCA+TGG | - | chr8.3:29730162-29730181 | None:intergenic | 50.0% | |
| TGATGCCATGGGGATGAACA+TGG | + | chr8.3:29730154-29730173 | MS.gene99583:CDS | 50.0% | |
| TGCAACAAGACACCCTTCAG+TGG | - | chr8.3:29728938-29728957 | None:intergenic | 50.0% | |
| TGGAGTTGTTGCAGATGGAG+AGG | + | chr8.3:29729890-29729909 | MS.gene99583:intron | 50.0% | |
| TGGCATCACCAGTACTGCAA+CGG | - | chr8.3:29730142-29730161 | None:intergenic | 50.0% | |
| TGGTAAGTCTGTGGTGTGTG+AGG | + | chr8.3:29730430-29730449 | MS.gene99583:CDS | 50.0% | |
| TGTCACCATGCCTTCCATTG+AGG | + | chr8.3:29730703-29730722 | MS.gene99583:CDS | 50.0% | |
| TGTCTACATAGCCACTGGTC+AGG | + | chr8.3:29730601-29730620 | MS.gene99583:CDS | 50.0% | |
| ! | CGTATTTTCTCCTCCACCGT+TGG | + | chr8.3:29728335-29728354 | MS.gene99583:CDS | 50.0% |
| ! | TGAAGTGAGGTTTTCTCCGG+TGG | - | chr8.3:29728257-29728276 | None:intergenic | 50.0% |
| !! | ATTCAGGTTGGTACTGTGGG+AGG | + | chr8.3:29731008-29731027 | MS.gene99583:intron | 50.0% |
| !! | CAAATTCCGGTTGGTGTTGC+GGG | + | chr8.3:29728868-29728887 | MS.gene99583:CDS | 50.0% |
| !! | GAGTACTGAACCGGCTACAA+TGG | - | chr8.3:29731132-29731151 | None:intergenic | 50.0% |
| !! | TACAGCTGCCGCTTTCTTGT+CGG | - | chr8.3:29730393-29730412 | None:intergenic | 50.0% |
| !! | TGCAGTACTGGTGATGCCAT+GGG | + | chr8.3:29730143-29730162 | MS.gene99583:CDS | 50.0% |
| !! | TGCCGGTTGTGGTTTTACGT+CGG | - | chr8.3:29728572-29728591 | None:intergenic | 50.0% |
| !! | TTCAGGTTGGTACTGTGGGA+GGG | + | chr8.3:29731009-29731028 | MS.gene99583:intron | 50.0% |
| !! | TTGCAGTACTGGTGATGCCA+TGG | + | chr8.3:29730142-29730161 | MS.gene99583:CDS | 50.0% |
| !!! | GGTTTTGAGGTTTTCACCGC+CGG | - | chr8.3:29728215-29728234 | None:intergenic | 50.0% |
| AACGGCCCAGTAACGTTGCA+AGG | + | chr8.3:29729573-29729592 | MS.gene99583:intron | 55.0% | |
| AAGCTTACCACCACCACCAC+CGG | + | chr8.3:29728238-29728257 | MS.gene99583:CDS | 55.0% | |
| ACACCCTTCAGTGGTAGCCA+TGG | - | chr8.3:29728929-29728948 | None:intergenic | 55.0% | |
| ACCTAGAAGGTAAACGGCGG+AGG | - | chr8.3:29728437-29728456 | None:intergenic | 55.0% | |
| ACGGCCCAGTAACGTTGCAA+GGG | + | chr8.3:29729574-29729593 | MS.gene99583:intron | 55.0% | |
| CACCCTTCAGTGGTAGCCAT+GGG | - | chr8.3:29728928-29728947 | None:intergenic | 55.0% | |
| CAGCAAGGGCTGATCCAGTT+AGG | - | chr8.3:29730535-29730554 | None:intergenic | 55.0% | |
| CGCCAGTCCAAACATGGAGA+GGG | + | chr8.3:29729740-29729759 | MS.gene99583:intron | 55.0% | |
| CGGATCACGAACTTCCTTCC+CGG | + | chr8.3:29728468-29728487 | MS.gene99583:CDS | 55.0% | |
| CTAACTGGATCAGCCCTTGC+TGG | + | chr8.3:29730533-29730552 | MS.gene99583:CDS | 55.0% | |
| CTTCGTCGGAGAGATCATCC+GGG | - | chr8.3:29728489-29728508 | None:intergenic | 55.0% | |
| GAATCTCACACCGGAAGACG+AGG | + | chr8.3:29728645-29728664 | MS.gene99583:CDS | 55.0% | |
| GCCAGTCCAAACATGGAGAG+GGG | + | chr8.3:29729741-29729760 | MS.gene99583:intron | 55.0% | |
| GCCGTTGGAGTTGTTGCAGA+TGG | + | chr8.3:29729885-29729904 | MS.gene99583:intron | 55.0% | |
| GTACCCATGGCTACCACTGA+AGG | + | chr8.3:29728922-29728941 | MS.gene99583:CDS | 55.0% | |
| TACGGATCTTCTCGCGCCAA+CGG | - | chr8.3:29728354-29728373 | None:intergenic | 55.0% | |
| TCCCCTCTCCATGTTTGGAC+TGG | - | chr8.3:29729745-29729764 | None:intergenic | 55.0% | |
| TCTCACCGCCAGTCCAAACA+TGG | + | chr8.3:29729734-29729753 | MS.gene99583:intron | 55.0% | |
| TGCACCTGGAGATTCTGTGC+TGG | - | chr8.3:29731090-29731109 | None:intergenic | 55.0% | |
| TGTTGCGGGTCCACTGTTGT+TGG | + | chr8.3:29728882-29728901 | MS.gene99583:CDS | 55.0% | |
| TTGCAACGTTACTGGGCCGT+TGG | - | chr8.3:29729574-29729593 | None:intergenic | 55.0% | |
| TTGGCGCGAGAAGATCCGTA+CGG | + | chr8.3:29728354-29728373 | MS.gene99583:CDS | 55.0% | |
| ! | AGTGAGGTTTTCTCCGGTGG+TGG | - | chr8.3:29728254-29728273 | None:intergenic | 55.0% |
| ! | CCTCTCCATGTTTGGACTGG+CGG | - | chr8.3:29729742-29729761 | None:intergenic | 55.0% |
| ! | GAAGACTAGTGTGGAGGCAC+TGG | + | chr8.3:29730487-29730506 | MS.gene99583:CDS | 55.0% |
| ! | GACGTATTGCCGCCGCTTTA+CGG | - | chr8.3:29728738-29728757 | None:intergenic | 55.0% |
| ! | TCGACAAGTGCTGCTGGACA+CGG | - | chr8.3:29728547-29728566 | None:intergenic | 55.0% |
| ! | TGAAGGGCGTGGTAAGTCTG+TGG | + | chr8.3:29730421-29730440 | MS.gene99583:CDS | 55.0% |
| ! | TGCACCGGTGAATCTCACAC+CGG | + | chr8.3:29728636-29728655 | MS.gene99583:CDS | 55.0% |
| ! | TGTAGCCGGTTCAGTACTCG+CGG | + | chr8.3:29731133-29731152 | MS.gene99583:CDS | 55.0% |
| !! | GCAGTACTGGTGATGCCATG+GGG | + | chr8.3:29730144-29730163 | MS.gene99583:CDS | 55.0% |
| !! | GGTGGTGGTGGTAAGCTTCT+GGG | - | chr8.3:29728236-29728255 | None:intergenic | 55.0% |
| !! | TCAGGTTGGTACTGTGGGAG+GGG | + | chr8.3:29731010-29731029 | MS.gene99583:intron | 55.0% |
| !! | TGGTGGTGGTGGTAAGCTTC+TGG | - | chr8.3:29728237-29728256 | None:intergenic | 55.0% |
| !! | TTTGAGGTTTTCACCGCCGG+CGG | - | chr8.3:29728212-29728231 | None:intergenic | 55.0% |
| AGCAGACTGCCGTAAAGCGG+CGG | + | chr8.3:29728726-29728745 | MS.gene99583:CDS | 60.0% | |
| AGTGGACCCGCAACACCAAC+CGG | - | chr8.3:29728877-29728896 | None:intergenic | 60.0% | |
| CCCTTGCTGGTGCTCTTGGT+GGG | + | chr8.3:29730546-29730565 | MS.gene99583:CDS | 60.0% | |
| CCGCCAGTCCAAACATGGAG+AGG | + | chr8.3:29729739-29729758 | MS.gene99583:intron | 60.0% | |
| CTGAGCAGGATCCTGACCAG+TGG | - | chr8.3:29730615-29730634 | None:intergenic | 60.0% | |
| GATCCCCTGCAAGGGTTGCA+GGG | + | chr8.3:29729513-29729532 | MS.gene99583:intron | 60.0% | |
| GCCTCCGCCGTTTACCTTCT+AGG | + | chr8.3:29728433-29728452 | MS.gene99583:CDS | 60.0% | |
| GCGGGTCCACTGTTGTTGGA+TGG | + | chr8.3:29728886-29728905 | MS.gene99583:CDS | 60.0% | |
| GGCGGCAATACGTCGTTCAG+CGG | + | chr8.3:29728744-29728763 | MS.gene99583:CDS | 60.0% | |
| GTCGGAGAGATCATCCGGGA+AGG | - | chr8.3:29728485-29728504 | None:intergenic | 60.0% | |
| TCAGCCCTTGCTGGTGCTCT+TGG | + | chr8.3:29730542-29730561 | MS.gene99583:CDS | 60.0% | |
| ! | GGAGTTACCGTTGCCGGTTG+TGG | - | chr8.3:29728583-29728602 | None:intergenic | 60.0% |
| ! | GTAGCCGGTTCAGTACTCGC+GGG | + | chr8.3:29731134-29731153 | MS.gene99583:CDS | 60.0% |
| ! | TTGAGGTTTTCACCGCCGGC+GGG | - | chr8.3:29728211-29728230 | None:intergenic | 60.0% |
| !! | ACCCACCAAGAGCACCAGCA+AGG | - | chr8.3:29730550-29730569 | None:intergenic | 60.0% |
| !! | CAGGTTGGTACTGTGGGAGG+GGG | + | chr8.3:29731011-29731030 | MS.gene99583:intron | 60.0% |
| !! | CCCACCAAGAGCACCAGCAA+GGG | - | chr8.3:29730549-29730568 | None:intergenic | 60.0% |
| !! | GAGGTTTTCTCCGGTGGTGG+TGG | - | chr8.3:29728251-29728270 | None:intergenic | 60.0% |
| !! | TCGGTGTCGACAAGTGCTGC+TGG | - | chr8.3:29728553-29728572 | None:intergenic | 60.0% |
| !!! | GTTTTCTCCGGTGGTGGTGG+TGG | - | chr8.3:29728248-29728267 | None:intergenic | 60.0% |
| AACGGCCCTGCAACCCTTGC+AGG | - | chr8.3:29729521-29729540 | None:intergenic | 65.0% | |
| ACGGCCCTGCAACCCTTGCA+GGG | - | chr8.3:29729520-29729539 | None:intergenic | 65.0% | |
| CTTCCTCCACGTTCTCCCGC+CGG | + | chr8.3:29728193-29728212 | MS.gene99583:CDS | 65.0% | |
| GCCCTTGCTGGTGCTCTTGG+TGG | + | chr8.3:29730545-29730564 | MS.gene99583:CDS | 65.0% | |
| GGATCCCCTGCAAGGGTTGC+AGG | + | chr8.3:29729512-29729531 | MS.gene99583:intron | 65.0% | |
| GGATCTTCTCGCGCCAACGG+TGG | - | chr8.3:29728351-29728370 | None:intergenic | 65.0% | |
| GGCGCCAGCACAGAATCTCC+AGG | + | chr8.3:29731083-29731102 | MS.gene99583:CDS | 65.0% | |
| TCTTCTCGCGCCAACGGTGG+AGG | - | chr8.3:29728348-29728367 | None:intergenic | 65.0% | |
| TGCAAGGGTTGCAGGGCCGT+TGG | + | chr8.3:29729520-29729539 | MS.gene99583:intron | 65.0% | |
| ! | AGTGCTGCTGGACACGGTCC+TGG | - | chr8.3:29728541-29728560 | None:intergenic | 65.0% |
| !! | CTCGCCCGCGAGTACTGAAC+CGG | - | chr8.3:29731141-29731160 | None:intergenic | 65.0% |
| CGGCCCTGCAACCCTTGCAG+GGG | - | chr8.3:29729519-29729538 | None:intergenic | 70.0% | |
| CCTCCACGTTCTCCCGCCGG+CGG | + | chr8.3:29728196-29728215 | MS.gene99583:CDS | 75.0% | |
| TCACCGCCGGCGGGAGAACG+TGG | - | chr8.3:29728202-29728221 | None:intergenic | 75.0% | |
| ! | CCGCCGGCGGGAGAACGTGG+AGG | - | chr8.3:29728199-29728218 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 29728166 | 29731256 | 29728166 | ID=MS.gene99583 |
| chr8.3 | mRNA | 29728166 | 29731256 | 29728166 | ID=MS.gene99583.t1;Parent=MS.gene99583 |
| chr8.3 | exon | 29728166 | 29729136 | 29728166 | ID=MS.gene99583.t1.exon1;Parent=MS.gene99583.t1 |
| chr8.3 | CDS | 29728166 | 29729136 | 29728166 | ID=cds.MS.gene99583.t1;Parent=MS.gene99583.t1 |
| chr8.3 | exon | 29730070 | 29730251 | 29730070 | ID=MS.gene99583.t1.exon2;Parent=MS.gene99583.t1 |
| chr8.3 | CDS | 29730070 | 29730251 | 29730070 | ID=cds.MS.gene99583.t1;Parent=MS.gene99583.t1 |
| chr8.3 | exon | 29730378 | 29730724 | 29730378 | ID=MS.gene99583.t1.exon3;Parent=MS.gene99583.t1 |
| chr8.3 | CDS | 29730378 | 29730724 | 29730378 | ID=cds.MS.gene99583.t1;Parent=MS.gene99583.t1 |
| chr8.3 | exon | 29731014 | 29731256 | 29731014 | ID=MS.gene99583.t1.exon4;Parent=MS.gene99583.t1 |
| chr8.3 | CDS | 29731014 | 29731256 | 29731014 | ID=cds.MS.gene99583.t1;Parent=MS.gene99583.t1 |
| Gene Sequence |
| Protein sequence |
