Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99590.t1 | XP_003629040.1 | 69.8 | 139 | 42 | 0 | 1 | 139 | 1 | 139 | 1.10E-38 | 170.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99590.t1 | G7L7W4 | 69.8 | 139 | 42 | 0 | 1 | 139 | 1 | 139 | 7.9e-39 | 170.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052609 | MS.gene99590 | 0.813652 | 2.30E-51 | -1.69E-46 |
| MS.gene053143 | MS.gene99590 | 0.805603 | 1.23E-49 | -1.69E-46 |
| MS.gene053563 | MS.gene99590 | 0.801561 | 8.49E-49 | -1.69E-46 |
| MS.gene059439 | MS.gene99590 | 0.810652 | 1.04E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99590.t1 | MTR_8g072450 | 91.367 | 139 | 12 | 0 | 1 | 139 | 1 | 139 | 1.32e-62 | 193 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 47 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAATCCGAAACCATGAAAT+TGG | 0.173108 | 8.3:+29934470 | None:intergenic |
| CGACCAACAAATTGATTCTT+TGG | 0.215949 | 8.3:-29934826 | MS.gene99590:CDS |
| GAATACGATCCAGGTTGTTT+AGG | 0.248971 | 8.3:+29934909 | None:intergenic |
| GCTAGAAAATCGAGTAATTC+AGG | 0.254707 | 8.3:-29937910 | MS.gene99590:intron |
| TTGTTCCAAACATTTGTAAA+TGG | 0.282556 | 8.3:+29938010 | None:intergenic |
| ATTGGATGCAAATGAGAATA+TGG | 0.299317 | 8.3:-29937398 | MS.gene99590:CDS |
| GGCAGCAACTCTTCCTCCTT+TGG | 0.302496 | 8.3:+29934883 | None:intergenic |
| TCATCCCAATTTCATGGTTT+CGG | 0.306568 | 8.3:-29934475 | MS.gene99590:CDS |
| AATACGATCCAGGTTGTTTA+GGG | 0.309187 | 8.3:+29934910 | None:intergenic |
| ATTGGATCGTCTTGAGCTTC+TGG | 0.310419 | 8.3:-29938219 | MS.gene99590:intron |
| AATCCTTTCGAATGAATTGA+TGG | 0.368633 | 8.3:+29934952 | None:intergenic |
| AGACTATCATCCCAATTTCA+TGG | 0.384868 | 8.3:-29934481 | MS.gene99590:CDS |
| TGTTGCCATTTACAAATGTT+TGG | 0.387938 | 8.3:-29938015 | MS.gene99590:CDS |
| TCTACATTAGCTGGAAAGAT+AGG | 0.394287 | 8.3:-29937436 | MS.gene99590:CDS |
| TCACCACAAAGGCACGTTGC+TGG | 0.395236 | 8.3:-29937946 | MS.gene99590:CDS |
| TAATCCGAAACCATGAAATT+GGG | 0.409603 | 8.3:+29934471 | None:intergenic |
| TGCAAATGAGAATATGGATA+TGG | 0.412766 | 8.3:-29937392 | MS.gene99590:CDS |
| TTTCCAGCAACGTGCCTTTG+TGG | 0.413715 | 8.3:+29937943 | None:intergenic |
| AAGAAGCAATGTCACACAAT+AGG | 0.426189 | 8.3:-29938050 | MS.gene99590:CDS |
| TGAATTGATGGAAGATTTGA+TGG | 0.432459 | 8.3:+29934964 | None:intergenic |
| TCTTCCACATCTACATTAGC+TGG | 0.433107 | 8.3:-29937445 | MS.gene99590:CDS |
| GCTCCAAAGAATCAATTTGT+TGG | 0.435997 | 8.3:+29934823 | None:intergenic |
| CTTTGGCATGAATACGATCC+AGG | 0.449915 | 8.3:+29934900 | None:intergenic |
| CTTCCATCAATTCATTCGAA+AGG | 0.476556 | 8.3:-29934955 | MS.gene99590:CDS |
| TCTTCAGTTGAGTATTGACT+TGG | 0.501841 | 8.3:-29937494 | MS.gene99590:intron |
| ATAGTCTTGGCCATATTCGT+TGG | 0.521711 | 8.3:+29934497 | None:intergenic |
| TTGAGTATTGACTTGGACAT+GGG | 0.529919 | 8.3:-29937487 | MS.gene99590:CDS |
| CTTGTCGATTCTCCAACGAT+TGG | 0.532394 | 8.3:-29938237 | MS.gene99590:CDS |
| CAAACACAGATGAAAACAAA+GGG | 0.536216 | 8.3:-29938274 | MS.gene99590:CDS |
| TGAAATTGGGATGATAGTCT+TGG | 0.556078 | 8.3:+29934484 | None:intergenic |
| AGCATATCATCAACTCCAAA+GGG | 0.557410 | 8.3:-29934803 | MS.gene99590:intron |
| AAAATTACTTGTGTTATGGG+AGG | 0.561746 | 8.3:+29937343 | None:intergenic |
| GATGGAAGATTTGATGGCAG+AGG | 0.562840 | 8.3:+29934970 | None:intergenic |
| AAATTACTTGTGTTATGGGA+GGG | 0.568908 | 8.3:+29937344 | None:intergenic |
| GCTCAAGACGATCCAATCGT+TGG | 0.572417 | 8.3:+29938225 | None:intergenic |
| GTTGAGTATTGACTTGGACA+TGG | 0.577411 | 8.3:-29937488 | MS.gene99590:CDS |
| CTTTCCAGCTAATGTAGATG+TGG | 0.580520 | 8.3:+29937441 | None:intergenic |
| GAGCATATCATCAACTCCAA+AGG | 0.584302 | 8.3:-29934804 | MS.gene99590:CDS |
| ACAAACACAGATGAAAACAA+AGG | 0.596759 | 8.3:-29938275 | MS.gene99590:CDS |
| ACGATCCAGGTTGTTTAGGG+TGG | 0.607997 | 8.3:+29934913 | None:intergenic |
| CAATCGTTGGAGAATCGACA+AGG | 0.612069 | 8.3:+29938238 | None:intergenic |
| AATCACCACCCTAAACAACC+TGG | 0.625449 | 8.3:-29934918 | MS.gene99590:CDS |
| CTGGATCGTATTCATGCCAA+AGG | 0.632915 | 8.3:-29934899 | MS.gene99590:CDS |
| TGGACATGGGAAACACATCA+AGG | 0.640707 | 8.3:-29937474 | MS.gene99590:CDS |
| GATCGTATTCATGCCAAAGG+AGG | 0.643715 | 8.3:-29934896 | MS.gene99590:CDS |
| TTTGAAGAAGTTCACCACAA+AGG | 0.650185 | 8.3:-29937957 | MS.gene99590:CDS |
| AATCGTTGGAGAATCGACAA+GGG | 0.726740 | 8.3:+29938239 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAACAAAAAATAAATTATG+TGG | + | chr8.3:29934875-29934894 | None:intergenic | 10.0% |
| !! | TCAATTAATATATTTAGTAT+TGG | - | chr8.3:29936314-29936333 | MS.gene99590:intron | 10.0% |
| !!! | TAATTTTAGATTTAATTCAA+TGG | - | chr8.3:29938173-29938192 | MS.gene99590:intron | 10.0% |
| !!! | TTATTTTAAGATTCATATAA+TGG | - | chr8.3:29934634-29934653 | MS.gene99590:intron | 10.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | - | chr8.3:29936157-29936176 | MS.gene99590:intron | 15.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | + | chr8.3:29936176-29936157 | None:intergenic | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | - | chr8.3:29936158-29936177 | MS.gene99590:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | + | chr8.3:29936177-29936158 | None:intergenic | 15.0% |
| !! | AGATAAAAAGTAATAAAATC+TGG | - | chr8.3:29935966-29935985 | MS.gene99590:intron | 15.0% |
| !! | ATGTCTAAACATTTAATAAA+GGG | + | chr8.3:29936232-29936251 | None:intergenic | 15.0% |
| !! | CATTTGTACTATTTATTAAA+TGG | - | chr8.3:29935670-29935689 | MS.gene99590:intron | 15.0% |
| !! | TAGATGAATAATATTTATGT+AGG | - | chr8.3:29935634-29935653 | MS.gene99590:intron | 15.0% |
| !! | TTCAAAAATTTAAGAGTTTA+AGG | + | chr8.3:29936085-29936066 | None:intergenic | 15.0% |
| !!! | AAAAGTATACATTTTTCTAA+AGG | - | chr8.3:29935029-29935048 | MS.gene99590:intron | 15.0% |
| !!! | AAATAATATCGATTTTACAT+TGG | + | chr8.3:29935066-29935085 | None:intergenic | 15.0% |
| !!! | AATTTTAATTTTATGTTTCG+AGG | + | chr8.3:29937628-29937647 | None:intergenic | 15.0% |
| !!! | ATTTTAATTTTATGTTTCGA+GGG | + | chr8.3:29937627-29937646 | None:intergenic | 15.0% |
| !!! | GTATCATCATAAAAATATTT+TGG | + | chr8.3:29937759-29937778 | None:intergenic | 15.0% |
| !!! | TAGAAAAATGTATACTTTTT+TGG | + | chr8.3:29935028-29935047 | None:intergenic | 15.0% |
| !!! | TATAAAAAGTGTTAAGATTT+TGG | + | chr8.3:29937889-29937908 | None:intergenic | 15.0% |
| !!! | TGTTTTTGAATTCAAATAAT+AGG | + | chr8.3:29936490-29936509 | None:intergenic | 15.0% |
| !!! | TTTTCAATAGTTAATTGATT+AGG | - | chr8.3:29936287-29936306 | MS.gene99590:intron | 15.0% |
| !! | AAACAAATTTGAATTGAGTA+GGG | - | chr8.3:29936096-29936115 | MS.gene99590:intron | 20.0% |
| !! | ACAAAAAATTACTTGTGTTA+TGG | + | chr8.3:29935412-29935431 | None:intergenic | 20.0% |
| !! | ACCATTAGAATAAAATTATG+TGG | + | chr8.3:29935469-29935488 | None:intergenic | 20.0% |
| !! | ATCGGTTAAATTAAATTTGA+TGG | - | chr8.3:29936411-29936430 | MS.gene99590:intron | 20.0% |
| !! | CAAAAAATTACTTGTGTTAT+GGG | + | chr8.3:29935411-29935430 | None:intergenic | 20.0% |
| !! | CTATTGAAAAATATTGATCA+AGG | + | chr8.3:29936277-29936296 | None:intergenic | 20.0% |
| !! | GATGTCTAAACATTTAATAA+AGG | + | chr8.3:29936233-29936252 | None:intergenic | 20.0% |
| !! | GATTAAGTCATACATTTAAT+CGG | - | chr8.3:29936393-29936412 | MS.gene99590:intron | 20.0% |
| !! | GTTAACCAATACAAAATTAT+TGG | + | chr8.3:29938131-29938150 | None:intergenic | 20.0% |
| !! | TAAACAAATTTGAATTGAGT+AGG | - | chr8.3:29936095-29936114 | MS.gene99590:intron | 20.0% |
| !! | TAAGACACATTAATTCAAAA+TGG | - | chr8.3:29936594-29936613 | MS.gene99590:intron | 20.0% |
| !!! | AAAAATGTATACTTTTTTGG+AGG | + | chr8.3:29935025-29935044 | None:intergenic | 20.0% |
| !!! | AATTTTGCGATAATTTTTTG+CGG | - | chr8.3:29936001-29936020 | MS.gene99590:intron | 20.0% |
| !!! | GGAGTTATGTTATATATTTT+TGG | - | chr8.3:29936903-29936922 | MS.gene99590:intron | 20.0% |
| !!! | TCCACATAATTTTATTCTAA+TGG | - | chr8.3:29935465-29935484 | MS.gene99590:intron | 20.0% |
| !!! | TGAATTTTTATCTGTAACAT+GGG | + | chr8.3:29935149-29935168 | None:intergenic | 20.0% |
| !!! | TTGAATTTTTATCTGTAACA+TGG | + | chr8.3:29935150-29935169 | None:intergenic | 20.0% |
| ! | AGTGCAGAAAAACAAAATTA+GGG | - | chr8.3:29936129-29936148 | MS.gene99590:intron | 25.0% |
| ! | ATACAAGTTAGATCTCTAAA+AGG | - | chr8.3:29937048-29937067 | MS.gene99590:intron | 25.0% |
| ! | CAATAATCACAACACATAAT+TGG | + | chr8.3:29936625-29936644 | None:intergenic | 25.0% |
| ! | CAATTATGTGTTGTGATTAT+TGG | - | chr8.3:29936623-29936642 | MS.gene99590:intron | 25.0% |
| ! | GTAATTTACTCAACAAAGAT+AGG | + | chr8.3:29936714-29936733 | None:intergenic | 25.0% |
| ! | TAAAAAGGAAGAAAGATACA+AGG | - | chr8.3:29937147-29937166 | MS.gene99590:intron | 25.0% |
| ! | TAAAGTTGTAAAGGATTTGA+AGG | - | chr8.3:29937674-29937693 | MS.gene99590:intron | 25.0% |
| ! | TTGTTCCAAACATTTGTAAA+TGG | + | chr8.3:29934741-29934760 | None:intergenic | 25.0% |
| ! | TTGTTGAGTAAATTACTCAA+TGG | - | chr8.3:29936718-29936737 | MS.gene99590:intron | 25.0% |
| ! | TTTATATCACTTTGTGGTTA+TGG | + | chr8.3:29935194-29935213 | None:intergenic | 25.0% |
| !! | AATCTTTGTATGGAAGTTTT+TGG | - | chr8.3:29937491-29937510 | MS.gene99590:intron | 25.0% |
| !! | CATGTTCTATAGAAAGATTT+TGG | - | chr8.3:29936788-29936807 | MS.gene99590:intron | 25.0% |
| !! | CTTCTCCAATAATTTTGTAT+TGG | - | chr8.3:29938123-29938142 | MS.gene99590:intron | 25.0% |
| !! | TACAAGTTAGATCTCTAAAA+GGG | - | chr8.3:29937049-29937068 | MS.gene99590:intron | 25.0% |
| !! | TTTTATCAAACCAACGAATA+TGG | - | chr8.3:29938241-29938260 | MS.gene99590:CDS | 25.0% |
| !!! | AATCAAACTTTGTTTTAGCA+GGG | + | chr8.3:29935806-29935825 | None:intergenic | 25.0% |
| !!! | TAATATCGATTTTACATTGG+AGG | + | chr8.3:29935063-29935082 | None:intergenic | 25.0% |
| !!! | TAATCAAACTTTGTTTTAGC+AGG | + | chr8.3:29935807-29935826 | None:intergenic | 25.0% |
| !!! | TATATTTAGTATTGGTTTCG+TGG | - | chr8.3:29936322-29936341 | MS.gene99590:intron | 25.0% |
| AAAATTACTTGTGTTATGGG+AGG | + | chr8.3:29935408-29935427 | None:intergenic | 30.0% | |
| AAATTACTTGTGTTATGGGA+GGG | + | chr8.3:29935407-29935426 | None:intergenic | 30.0% | |
| AATCAAAGCAATGTCTAGAA+TGG | - | chr8.3:29935564-29935583 | MS.gene99590:intron | 30.0% | |
| AATCCTTTCGAATGAATTGA+TGG | + | chr8.3:29937799-29937818 | None:intergenic | 30.0% | |
| ACAAACACAGATGAAAACAA+AGG | - | chr8.3:29934473-29934492 | MS.gene99590:CDS | 30.0% | |
| AGGAAAAAGATCAGAATCAT+TGG | - | chr8.3:29935332-29935351 | MS.gene99590:intron | 30.0% | |
| ATCTTAAAATAATGTCCCAC+TGG | - | chr8.3:29936961-29936980 | MS.gene99590:intron | 30.0% | |
| ATTCCTTTAACATGTGTTAG+TGG | - | chr8.3:29936811-29936830 | MS.gene99590:intron | 30.0% | |
| ATTGGATGCAAATGAGAATA+TGG | - | chr8.3:29935350-29935369 | MS.gene99590:intron | 30.0% | |
| ATTTGTATCCTTAGTGCTTT+CGG | - | chr8.3:29937435-29937454 | MS.gene99590:CDS | 30.0% | |
| CAAACACAGATGAAAACAAA+GGG | - | chr8.3:29934474-29934493 | MS.gene99590:CDS | 30.0% | |
| CAAGATTAGAACACTATGAA+AGG | - | chr8.3:29935869-29935888 | MS.gene99590:intron | 30.0% | |
| CAGTGCAGAAAAACAAAATT+AGG | - | chr8.3:29936128-29936147 | MS.gene99590:intron | 30.0% | |
| CTTCTTTAGCAATCTTTGTA+TGG | - | chr8.3:29937481-29937500 | MS.gene99590:CDS | 30.0% | |
| GATGTGTTTATATCACTTTG+TGG | + | chr8.3:29935200-29935219 | None:intergenic | 30.0% | |
| GCTTTCAAAAGAAACTTCTT+TGG | - | chr8.3:29937397-29937416 | MS.gene99590:CDS | 30.0% | |
| GTGAACTTCTTCAAAAACAT+AGG | + | chr8.3:29934786-29934805 | None:intergenic | 30.0% | |
| GTTAAATCACAACGATAACA+TGG | + | chr8.3:29938153-29938172 | None:intergenic | 30.0% | |
| TAATCCGAAACCATGAAATT+GGG | + | chr8.3:29938280-29938299 | None:intergenic | 30.0% | |
| TAGGACAAATAAAGAGTTGT+TGG | + | chr8.3:29936547-29936566 | None:intergenic | 30.0% | |
| TCTTAAAATAATGTCCCACT+GGG | - | chr8.3:29936962-29936981 | MS.gene99590:intron | 30.0% | |
| TGAATTGATGGAAGATTTGA+TGG | + | chr8.3:29937787-29937806 | None:intergenic | 30.0% | |
| TGCAAATGAGAATATGGATA+TGG | - | chr8.3:29935356-29935375 | MS.gene99590:intron | 30.0% | |
| TTAATCCGAAACCATGAAAT+TGG | + | chr8.3:29938281-29938300 | None:intergenic | 30.0% | |
| TTCCAAAAGATTTCAGCTAA+AGG | + | chr8.3:29936883-29936902 | None:intergenic | 30.0% | |
| TTCTTCACAGCAAATAAACT+CGG | - | chr8.3:29937012-29937031 | MS.gene99590:intron | 30.0% | |
| ! | ACAAGTTAGATCTCTAAAAG+GGG | - | chr8.3:29937050-29937069 | MS.gene99590:intron | 30.0% |
| ! | ATCAAAGCAATGTCTAGAAT+GGG | - | chr8.3:29935565-29935584 | MS.gene99590:intron | 30.0% |
| ! | GATAGGTCTTTTGAATTTGA+TGG | + | chr8.3:29936697-29936716 | None:intergenic | 30.0% |
| ! | GTTTGATTTCAAGCATATCA+AGG | + | chr8.3:29937580-29937599 | None:intergenic | 30.0% |
| ! | TGAGTTGTCTAAAGTTGTAA+AGG | - | chr8.3:29937665-29937684 | MS.gene99590:intron | 30.0% |
| ! | TGTTGCCATTTACAAATGTT+TGG | - | chr8.3:29934733-29934752 | MS.gene99590:intron | 30.0% |
| ! | TTTAGCTGAAATCTTTTGGA+AGG | - | chr8.3:29936882-29936901 | MS.gene99590:intron | 30.0% |
| ! | TTTGATGGATCATGTTTAGA+TGG | + | chr8.3:29936682-29936701 | None:intergenic | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | - | chr8.3:29936189-29936208 | MS.gene99590:intron | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | + | chr8.3:29936208-29936189 | None:intergenic | 30.0% |
| !! | TTACAAGGTCGCTATTTTAT+AGG | - | chr8.3:29936188-29936207 | MS.gene99590:intron | 30.0% |
| !! | TTACAAGGTCGCTATTTTAT+AGG | + | chr8.3:29936207-29936188 | None:intergenic | 30.0% |
| AAAGTAGCGGTTATCTTCAA+CGG | - | chr8.3:29937542-29937561 | MS.gene99590:intron | 35.0% | |
| AAGAAGCAATGTCACACAAT+AGG | - | chr8.3:29934698-29934717 | MS.gene99590:intron | 35.0% | |
| AAGATTGTTGTGTGCGATTT+AGG | - | chr8.3:29937728-29937747 | MS.gene99590:intron | 35.0% | |
| AAGTAGGGACTAAACTTACA+AGG | - | chr8.3:29936173-29936192 | MS.gene99590:intron | 35.0% | |
| AAGTAGGGACTAAACTTACA+AGG | + | chr8.3:29936192-29936173 | None:intergenic | 35.0% | |
| AATACGATCCAGGTTGTTTA+GGG | + | chr8.3:29937841-29937860 | None:intergenic | 35.0% | |
| ACAATAGGAAATGACTCAAG+TGG | - | chr8.3:29935590-29935609 | MS.gene99590:intron | 35.0% | |
| ACTTTGTGGTTATGGAACTT+AGG | + | chr8.3:29935186-29935205 | None:intergenic | 35.0% | |
| AGACTATCATCCCAATTTCA+TGG | - | chr8.3:29938267-29938286 | MS.gene99590:CDS | 35.0% | |
| AGATGACTTTGTCAAGTTTC+TGG | + | chr8.3:29936945-29936964 | None:intergenic | 35.0% | |
| AGCATATCATCAACTCCAAA+GGG | - | chr8.3:29937945-29937964 | MS.gene99590:CDS | 35.0% | |
| ATATACTTTGAGCGAAGGAA+CGG | + | chr8.3:29937602-29937621 | None:intergenic | 35.0% | |
| ATTAAACTCACCATCTTGCA+GGG | - | chr8.3:29935534-29935553 | MS.gene99590:intron | 35.0% | |
| CTTCCATCAATTCATTCGAA+AGG | - | chr8.3:29937793-29937812 | MS.gene99590:intron | 35.0% | |
| CTTTAACATGTGTTAGTGGA+GGG | - | chr8.3:29936815-29936834 | MS.gene99590:intron | 35.0% | |
| GAAACAGAAGCTGCATTATT+AGG | + | chr8.3:29934673-29934692 | None:intergenic | 35.0% | |
| GCTAGAAAATCGAGTAATTC+AGG | - | chr8.3:29934838-29934857 | MS.gene99590:CDS | 35.0% | |
| GCTCCAAAGAATCAATTTGT+TGG | + | chr8.3:29937928-29937947 | None:intergenic | 35.0% | |
| TAATCTCAAACTCCATGCAA+AGG | + | chr8.3:29937317-29937336 | None:intergenic | 35.0% | |
| TATTCTAATGGTCAGCTTTG+TGG | - | chr8.3:29935477-29935496 | MS.gene99590:intron | 35.0% | |
| TCATCCCAATTTCATGGTTT+CGG | - | chr8.3:29938273-29938292 | MS.gene99590:CDS | 35.0% | |
| TCTACATTAGCTGGAAAGAT+AGG | - | chr8.3:29935312-29935331 | MS.gene99590:intron | 35.0% | |
| TGAAATTGGGATGATAGTCT+TGG | + | chr8.3:29938267-29938286 | None:intergenic | 35.0% | |
| TGACTCAAGTGGTTGAAATT+TGG | - | chr8.3:29935601-29935620 | MS.gene99590:intron | 35.0% | |
| TGGTTATGGAACTTAGGATA+TGG | + | chr8.3:29935180-29935199 | None:intergenic | 35.0% | |
| TTTGAAGAAGTTCACCACAA+AGG | - | chr8.3:29934791-29934810 | MS.gene99590:intron | 35.0% | |
| ! | AACTTTTCATTTCGCACACT+TGG | + | chr8.3:29937174-29937193 | None:intergenic | 35.0% |
| ! | ACTTTTCATTTCGCACACTT+GGG | + | chr8.3:29937173-29937192 | None:intergenic | 35.0% |
| ! | CGACCAACAAATTGATTCTT+TGG | - | chr8.3:29937922-29937941 | MS.gene99590:CDS | 35.0% |
| ! | TGCCTTTAGCTGAAATCTTT+TGG | - | chr8.3:29936878-29936897 | MS.gene99590:intron | 35.0% |
| !! | ATATGTGTTTCTAGTAGGCA+GGG | - | chr8.3:29937269-29937288 | MS.gene99590:intron | 35.0% |
| !! | CTTTGTATGGAAGTTTTTGG+AGG | - | chr8.3:29937494-29937513 | MS.gene99590:intron | 35.0% |
| !! | TCTTCAGTTGAGTATTGACT+TGG | - | chr8.3:29935254-29935273 | MS.gene99590:intron | 35.0% |
| !! | TGTCTAGAATGGGTTACAAT+AGG | - | chr8.3:29935575-29935594 | MS.gene99590:intron | 35.0% |
| !! | TTATGTGGAAGCGTACTTTT+AGG | + | chr8.3:29935454-29935473 | None:intergenic | 35.0% |
| !! | TTGAGTATTGACTTGGACAT+GGG | - | chr8.3:29935261-29935280 | MS.gene99590:intron | 35.0% |
| AATCGTTGGAGAATCGACAA+GGG | + | chr8.3:29934512-29934531 | None:intergenic | 40.0% | |
| ACGTGTCTGCAACAAACATA+AGG | - | chr8.3:29934977-29934996 | MS.gene99590:CDS | 40.0% | |
| AGACACGTGAAACAAGAGTT+TGG | + | chr8.3:29934965-29934984 | None:intergenic | 40.0% | |
| ATATCATCAACTCCAAAGGG+TGG | - | chr8.3:29937948-29937967 | MS.gene99590:CDS | 40.0% | |
| ATCGTGTCTGCCAAAACATA+AGG | - | chr8.3:29934935-29934954 | MS.gene99590:CDS | 40.0% | |
| CAGACACGATGATACATAGA+CGG | + | chr8.3:29934925-29934944 | None:intergenic | 40.0% | |
| CATTAAACTCACCATCTTGC+AGG | - | chr8.3:29935533-29935552 | MS.gene99590:intron | 40.0% | |
| CATTGAGGTAGACAAAGCTA+AGG | + | chr8.3:29936860-29936879 | None:intergenic | 40.0% | |
| CCTCCACTAACACATGTTAA+AGG | + | chr8.3:29936817-29936836 | None:intergenic | 40.0% | |
| CCTTTAACATGTGTTAGTGG+AGG | - | chr8.3:29936814-29936833 | MS.gene99590:intron | 40.0% | |
| CGAAAATGAACTCCTTTGCA+TGG | - | chr8.3:29937302-29937321 | MS.gene99590:intron | 40.0% | |
| CTTGTAGGATAGCATTGTTG+TGG | - | chr8.3:29935501-29935520 | MS.gene99590:intron | 40.0% | |
| CTTTCCAGCTAATGTAGATG+TGG | + | chr8.3:29935310-29935329 | None:intergenic | 40.0% | |
| GAATACGATCCAGGTTGTTT+AGG | + | chr8.3:29937842-29937861 | None:intergenic | 40.0% | |
| GACACGTGAAACAAGAGTTT+GGG | + | chr8.3:29934964-29934983 | None:intergenic | 40.0% | |
| GAGCATATCATCAACTCCAA+AGG | - | chr8.3:29937944-29937963 | MS.gene99590:CDS | 40.0% | |
| GGGAAATATACTTTGAGCGA+AGG | + | chr8.3:29937607-29937626 | None:intergenic | 40.0% | |
| TATGTTGTCGATGCAGTACT+AGG | + | chr8.3:29936566-29936585 | None:intergenic | 40.0% | |
| TCTTCCACATCTACATTAGC+TGG | - | chr8.3:29935303-29935322 | MS.gene99590:intron | 40.0% | |
| TGTCTGCAACAAACATAAGG+TGG | - | chr8.3:29934980-29934999 | MS.gene99590:CDS | 40.0% | |
| ! | AGAGTATTATCCTTCGAGAG+CGG | - | chr8.3:29937245-29937264 | MS.gene99590:intron | 40.0% |
| ! | ATAGTCTTGGCCATATTCGT+TGG | + | chr8.3:29938254-29938273 | None:intergenic | 40.0% |
| !! | CATATGTGTTTCTAGTAGGC+AGG | - | chr8.3:29937268-29937287 | MS.gene99590:intron | 40.0% |
| !! | GATTTCAGCTAAAGGCATTG+AGG | + | chr8.3:29936875-29936894 | None:intergenic | 40.0% |
| !! | GTTGAGTATTGACTTGGACA+TGG | - | chr8.3:29935260-29935279 | MS.gene99590:intron | 40.0% |
| !! | TTATCCTTCCGAAAGCACTA+AGG | + | chr8.3:29937446-29937465 | None:intergenic | 40.0% |
| AAAGGGTGGAAAAGGAACAG+TGG | - | chr8.3:29937962-29937981 | MS.gene99590:CDS | 45.0% | |
| AACAAATATGCACGCCCAGT+GGG | + | chr8.3:29936979-29936998 | None:intergenic | 45.0% | |
| AACCTTTCGAGCGAAAGTAG+CGG | - | chr8.3:29937529-29937548 | MS.gene99590:intron | 45.0% | |
| AATCACCACCCTAAACAACC+TGG | - | chr8.3:29937830-29937849 | MS.gene99590:intron | 45.0% | |
| ATAAACTCGGCGAGCAATCT+AGG | - | chr8.3:29937025-29937044 | MS.gene99590:intron | 45.0% | |
| ATTCTATGTGCCCTGCAAGA+TGG | + | chr8.3:29935547-29935566 | None:intergenic | 45.0% | |
| ATTGGATCGTCTTGAGCTTC+TGG | - | chr8.3:29934529-29934548 | MS.gene99590:intron | 45.0% | |
| CAATCGTTGGAGAATCGACA+AGG | + | chr8.3:29934513-29934532 | None:intergenic | 45.0% | |
| CTGGATCGTATTCATGCCAA+AGG | - | chr8.3:29937849-29937868 | MS.gene99590:intron | 45.0% | |
| CTTTGGCATGAATACGATCC+AGG | + | chr8.3:29937851-29937870 | None:intergenic | 45.0% | |
| GATCGTATTCATGCCAAAGG+AGG | - | chr8.3:29937852-29937871 | MS.gene99590:intron | 45.0% | |
| GTAACATCTTCGTAGCTTGG+TGG | - | chr8.3:29935112-29935131 | MS.gene99590:intron | 45.0% | |
| GTAGGATAGCATTGTTGTGG+AGG | - | chr8.3:29935504-29935523 | MS.gene99590:intron | 45.0% | |
| GTATCCTTAGTGCTTTCGGA+AGG | - | chr8.3:29937439-29937458 | MS.gene99590:CDS | 45.0% | |
| TCAACTCCAAAGGGTGGAAA+AGG | - | chr8.3:29937954-29937973 | MS.gene99590:CDS | 45.0% | |
| TGCGTAACATCTTCGTAGCT+TGG | - | chr8.3:29935109-29935128 | MS.gene99590:intron | 45.0% | |
| TGGACATGGGAAACACATCA+AGG | - | chr8.3:29935274-29935293 | MS.gene99590:intron | 45.0% | |
| ! | ACTGTTCCTTTTCCACCCTT+TGG | + | chr8.3:29937963-29937982 | None:intergenic | 45.0% |
| ! | GATGGAAGATTTGATGGCAG+AGG | + | chr8.3:29937781-29937800 | None:intergenic | 45.0% |
| ! | GTTTGGGTCGCCTTATGTTT+TGG | + | chr8.3:29934948-29934967 | None:intergenic | 45.0% |
| !! | CTTGTCGATTCTCCAACGAT+TGG | - | chr8.3:29934511-29934530 | MS.gene99590:CDS | 45.0% |
| !! | GCGGCATATGTGTTTCTAGT+AGG | - | chr8.3:29937264-29937283 | MS.gene99590:intron | 45.0% |
| !!! | ATTAGTAAATTTTTTTTTAT+AGG | + | chr8.3:29935774-29935793 | None:intergenic | 5.0% |
| !!! | TAATTTTTTATTATGTAAAA+AGG | - | chr8.3:29937132-29937151 | MS.gene99590:intron | 5.0% |
| !!! | TTAGTAAATTTTTTTTTATA+GGG | + | chr8.3:29935773-29935792 | None:intergenic | 5.0% |
| AACACATATGCCGCTCTCGA+AGG | + | chr8.3:29937258-29937277 | None:intergenic | 50.0% | |
| ACGATCCAGGTTGTTTAGGG+TGG | + | chr8.3:29937838-29937857 | None:intergenic | 50.0% | |
| CAACAAATATGCACGCCCAG+TGG | + | chr8.3:29936980-29936999 | None:intergenic | 50.0% | |
| GCTCAAGACGATCCAATCGT+TGG | + | chr8.3:29934526-29934545 | None:intergenic | 50.0% | |
| TTTCCAGCAACGTGCCTTTG+TGG | + | chr8.3:29934808-29934827 | None:intergenic | 50.0% | |
| ! | AACCGCTACTTTCGCTCGAA+AGG | + | chr8.3:29937534-29937553 | None:intergenic | 50.0% |
| !! | GGTCAGCTTTGTGGTCTTGT+AGG | - | chr8.3:29935486-29935505 | MS.gene99590:intron | 50.0% |
| GGCAGCAACTCTTCCTCCTT+TGG | + | chr8.3:29937868-29937887 | None:intergenic | 55.0% | |
| ! | TCACCACAAAGGCACGTTGC+TGG | - | chr8.3:29934802-29934821 | MS.gene99590:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 29934470 | 29938300 | 29934470 | ID=MS.gene99590 |
| chr8.3 | mRNA | 29934470 | 29938300 | 29934470 | ID=MS.gene99590.t1;Parent=MS.gene99590 |
| chr8.3 | exon | 29938220 | 29938300 | 29938220 | ID=MS.gene99590.t1.exon1;Parent=MS.gene99590.t1 |
| chr8.3 | CDS | 29938220 | 29938300 | 29938220 | ID=cds.MS.gene99590.t1;Parent=MS.gene99590.t1 |
| chr8.3 | exon | 29937911 | 29938087 | 29937911 | ID=MS.gene99590.t1.exon2;Parent=MS.gene99590.t1 |
| chr8.3 | CDS | 29937911 | 29938087 | 29937911 | ID=cds.MS.gene99590.t1;Parent=MS.gene99590.t1 |
| chr8.3 | exon | 29937351 | 29937509 | 29937351 | ID=MS.gene99590.t1.exon3;Parent=MS.gene99590.t1 |
| chr8.3 | CDS | 29937351 | 29937509 | 29937351 | ID=cds.MS.gene99590.t1;Parent=MS.gene99590.t1 |
| chr8.3 | exon | 29934804 | 29935020 | 29934804 | ID=MS.gene99590.t1.exon4;Parent=MS.gene99590.t1 |
| chr8.3 | CDS | 29934804 | 29935020 | 29934804 | ID=cds.MS.gene99590.t1;Parent=MS.gene99590.t1 |
| chr8.3 | exon | 29934470 | 29934534 | 29934470 | ID=MS.gene99590.t1.exon5;Parent=MS.gene99590.t1 |
| chr8.3 | CDS | 29934470 | 29934534 | 29934470 | ID=cds.MS.gene99590.t1;Parent=MS.gene99590.t1 |
| Gene Sequence |
| Protein sequence |
