Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99717.t1 | RHN73282.1 | 70.7 | 723 | 24 | 1 | 59 | 593 | 1 | 723 | 4.70E-278 | 966.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99717.t1 | Q9SWG3 | 35.3 | 422 | 264 | 6 | 35 | 449 | 32 | 451 | 1.5e-75 | 285.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99717.t1 | A0A396J7J0 | 70.7 | 723 | 24 | 1 | 59 | 593 | 1 | 723 | 3.4e-278 | 966.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene99717.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053054 | MS.gene99717 | -0.808083 | 3.69E-50 | -1.69E-46 |
| MS.gene060634 | MS.gene99717 | -0.801604 | 8.32E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99717.t1 | MTR_2g090105 | 59.659 | 176 | 35 | 3 | 450 | 625 | 21 | 160 | 2.56e-55 | 186 |
| MS.gene99717.t1 | MTR_6g051425 | 35.821 | 201 | 128 | 1 | 121 | 320 | 91 | 291 | 1.15e-36 | 140 |
| MS.gene99717.t1 | MTR_7g446060 | 66.667 | 90 | 30 | 0 | 132 | 221 | 2 | 91 | 1.23e-34 | 128 |
| MS.gene99717.t1 | MTR_7g031620 | 62.963 | 81 | 30 | 0 | 61 | 141 | 2 | 82 | 5.75e-28 | 107 |
| MS.gene99717.t1 | MTR_5g023310 | 39.490 | 157 | 28 | 2 | 186 | 342 | 16 | 105 | 4.55e-27 | 106 |
| MS.gene99717.t1 | MTR_4g035820 | 30.258 | 271 | 168 | 7 | 40 | 295 | 60 | 324 | 5.46e-24 | 107 |
| MS.gene99717.t1 | MTR_0558s0020 | 27.099 | 262 | 157 | 6 | 59 | 291 | 40 | 296 | 2.75e-21 | 95.1 |
| MS.gene99717.t1 | MTR_1g008290 | 36.242 | 149 | 89 | 3 | 99 | 247 | 2 | 144 | 1.96e-19 | 85.9 |
| MS.gene99717.t1 | MTR_0856s0010 | 36.220 | 127 | 80 | 1 | 55 | 180 | 34 | 160 | 5.00e-19 | 85.1 |
| MS.gene99717.t1 | MTR_1g070355 | 29.658 | 263 | 164 | 9 | 35 | 285 | 56 | 309 | 8.66e-19 | 90.5 |
| MS.gene99717.t1 | MTR_8g446020 | 31.724 | 145 | 98 | 1 | 148 | 291 | 112 | 256 | 6.84e-18 | 84.3 |
| MS.gene99717.t1 | MTR_6g090505 | 26.943 | 193 | 135 | 3 | 119 | 307 | 57 | 247 | 2.21e-14 | 75.5 |
| MS.gene99717.t1 | MTR_7g446480 | 30.065 | 153 | 106 | 1 | 148 | 299 | 162 | 314 | 5.05e-14 | 73.9 |
| MS.gene99717.t1 | MTR_7g446510 | 29.412 | 153 | 107 | 1 | 148 | 299 | 177 | 329 | 1.85e-13 | 72.4 |
| MS.gene99717.t1 | MTR_5g076070 | 25.475 | 263 | 179 | 9 | 30 | 279 | 24 | 282 | 3.13e-13 | 70.9 |
| MS.gene99717.t1 | MTR_1g083640 | 24.893 | 233 | 141 | 6 | 59 | 262 | 55 | 282 | 4.87e-13 | 70.5 |
| MS.gene99717.t1 | MTR_7g446520 | 23.651 | 241 | 161 | 5 | 59 | 293 | 92 | 315 | 1.26e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99717.t1 | AT4G15090 | 35.308 | 422 | 264 | 6 | 35 | 449 | 32 | 451 | 1.07e-85 | 285 |
| MS.gene99717.t1 | AT4G15090 | 35.308 | 422 | 264 | 6 | 35 | 449 | 32 | 451 | 1.07e-85 | 285 |
| MS.gene99717.t1 | AT4G15090 | 35.308 | 422 | 264 | 6 | 35 | 449 | 32 | 451 | 1.07e-85 | 285 |
| MS.gene99717.t1 | AT4G15090 | 35.308 | 422 | 264 | 6 | 35 | 449 | 32 | 451 | 1.07e-85 | 285 |
| MS.gene99717.t1 | AT4G15090 | 35.308 | 422 | 264 | 6 | 35 | 449 | 32 | 451 | 1.07e-85 | 285 |
| MS.gene99717.t1 | AT4G38180 | 34.483 | 435 | 264 | 7 | 55 | 477 | 73 | 498 | 2.73e-82 | 275 |
| MS.gene99717.t1 | AT1G76320 | 35.606 | 396 | 242 | 5 | 59 | 449 | 1 | 388 | 7.67e-77 | 258 |
| MS.gene99717.t1 | AT1G76320 | 35.606 | 396 | 242 | 5 | 59 | 449 | 1 | 388 | 1.50e-76 | 259 |
| MS.gene99717.t1 | AT1G76320 | 35.606 | 396 | 242 | 5 | 59 | 449 | 1 | 388 | 1.77e-76 | 258 |
| MS.gene99717.t1 | AT1G76320 | 35.606 | 396 | 242 | 5 | 59 | 449 | 1 | 388 | 1.77e-76 | 258 |
| MS.gene99717.t1 | AT3G22170 | 31.591 | 440 | 259 | 5 | 55 | 476 | 70 | 485 | 1.31e-72 | 250 |
| MS.gene99717.t1 | AT3G22170 | 31.591 | 440 | 259 | 5 | 55 | 476 | 70 | 485 | 1.31e-72 | 250 |
| MS.gene99717.t1 | AT1G52520 | 34.491 | 403 | 248 | 7 | 51 | 449 | 81 | 471 | 2.38e-71 | 244 |
| MS.gene99717.t1 | AT1G80010 | 33.663 | 404 | 245 | 7 | 55 | 443 | 95 | 490 | 6.41e-69 | 238 |
| MS.gene99717.t1 | AT2G27110 | 31.466 | 464 | 274 | 12 | 55 | 506 | 49 | 480 | 7.75e-64 | 226 |
| MS.gene99717.t1 | AT2G27110 | 31.466 | 464 | 274 | 12 | 55 | 506 | 49 | 480 | 7.75e-64 | 226 |
| MS.gene99717.t1 | AT2G32250 | 32.746 | 397 | 226 | 5 | 57 | 451 | 40 | 397 | 2.50e-61 | 218 |
| MS.gene99717.t1 | AT2G32250 | 32.746 | 397 | 226 | 5 | 57 | 451 | 40 | 397 | 4.21e-61 | 218 |
| MS.gene99717.t1 | AT2G32250 | 32.746 | 397 | 226 | 5 | 57 | 451 | 40 | 397 | 4.21e-61 | 218 |
| MS.gene99717.t1 | AT2G32250 | 32.746 | 397 | 226 | 5 | 57 | 451 | 40 | 397 | 4.21e-61 | 218 |
| MS.gene99717.t1 | AT2G32250 | 32.746 | 397 | 226 | 5 | 57 | 451 | 40 | 397 | 4.59e-61 | 218 |
| MS.gene99717.t1 | AT2G32250 | 32.746 | 397 | 226 | 5 | 57 | 451 | 40 | 397 | 4.59e-61 | 218 |
| MS.gene99717.t1 | AT2G32250 | 32.658 | 395 | 225 | 5 | 59 | 451 | 1 | 356 | 3.58e-60 | 214 |
| MS.gene99717.t1 | AT2G32250 | 32.658 | 395 | 225 | 5 | 59 | 451 | 1 | 356 | 3.63e-60 | 214 |
| MS.gene99717.t1 | AT4G19990 | 31.678 | 423 | 213 | 8 | 57 | 449 | 37 | 413 | 2.64e-59 | 212 |
| MS.gene99717.t1 | AT4G19990 | 31.678 | 423 | 213 | 8 | 57 | 449 | 23 | 399 | 2.67e-59 | 212 |
| MS.gene99717.t1 | AT4G19990 | 31.678 | 423 | 213 | 8 | 57 | 449 | 23 | 399 | 2.67e-59 | 212 |
| MS.gene99717.t1 | AT4G19990 | 31.678 | 423 | 213 | 8 | 57 | 449 | 23 | 399 | 2.77e-59 | 212 |
| MS.gene99717.t1 | AT4G19990 | 31.678 | 423 | 213 | 8 | 57 | 449 | 23 | 399 | 3.38e-59 | 212 |
| MS.gene99717.t1 | AT4G19990 | 31.678 | 423 | 213 | 8 | 57 | 449 | 23 | 399 | 3.38e-59 | 212 |
| MS.gene99717.t1 | AT2G27110 | 34.125 | 337 | 198 | 5 | 179 | 506 | 14 | 335 | 3.96e-58 | 208 |
| MS.gene99717.t1 | AT5G18960 | 32.857 | 420 | 229 | 13 | 30 | 441 | 190 | 564 | 1.11e-57 | 208 |
| MS.gene99717.t1 | AT5G18960 | 32.857 | 420 | 229 | 13 | 30 | 441 | 190 | 564 | 1.11e-57 | 208 |
| MS.gene99717.t1 | AT3G06250 | 30.986 | 426 | 244 | 11 | 55 | 477 | 190 | 568 | 3.42e-57 | 206 |
| MS.gene99717.t1 | AT3G06250 | 30.986 | 426 | 244 | 11 | 55 | 477 | 190 | 568 | 3.42e-57 | 206 |
| MS.gene99717.t1 | AT3G06250 | 30.986 | 426 | 244 | 11 | 55 | 477 | 190 | 568 | 3.42e-57 | 206 |
| MS.gene99717.t1 | AT4G19990 | 32.620 | 374 | 202 | 7 | 80 | 449 | 15 | 342 | 8.16e-57 | 204 |
| MS.gene99717.t1 | AT4G38170 | 37.885 | 227 | 129 | 4 | 226 | 447 | 19 | 238 | 1.59e-47 | 176 |
| MS.gene99717.t1 | AT1G10240 | 28.233 | 464 | 291 | 16 | 17 | 457 | 15 | 459 | 4.04e-46 | 174 |
| MS.gene99717.t1 | AT1G10240 | 28.233 | 464 | 291 | 16 | 17 | 457 | 15 | 459 | 4.04e-46 | 174 |
| MS.gene99717.t1 | AT5G28530 | 26.683 | 416 | 276 | 11 | 54 | 445 | 54 | 464 | 2.57e-36 | 145 |
| MS.gene99717.t1 | AT5G28530 | 26.683 | 416 | 276 | 11 | 54 | 445 | 54 | 464 | 2.94e-36 | 145 |
| MS.gene99717.t1 | AT5G28530 | 26.683 | 416 | 276 | 11 | 54 | 445 | 54 | 464 | 2.94e-36 | 145 |
| MS.gene99717.t1 | AT5G28530 | 29.412 | 153 | 101 | 3 | 297 | 445 | 252 | 401 | 7.56e-15 | 78.6 |
| MS.gene99717.t1 | AT5G28530 | 29.412 | 153 | 101 | 3 | 297 | 445 | 252 | 401 | 7.57e-15 | 78.6 |
Find 95 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATATGTAAGGGACACATTT+TGG | 0.131035 | 5.2:-62212261 | MS.gene99717:CDS |
| TTACACTGCGTTTGAGTTAT+AGG | 0.177962 | 5.2:+62213198 | None:intergenic |
| AATCCAAATCAAGAACATTT+TGG | 0.227031 | 5.2:-62210687 | MS.gene99717:CDS |
| CCTTTACTTCGAGCTACTTT+AGG | 0.245170 | 5.2:+62211467 | None:intergenic |
| AATGCTTGTATTTATTTAGA+TGG | 0.249459 | 5.2:-62213165 | MS.gene99717:CDS |
| TGACCAAAATGTTCTTGATT+TGG | 0.278690 | 5.2:+62210684 | None:intergenic |
| GTCGGTTACGAAATGTGTTT+TGG | 0.279007 | 5.2:-62212798 | MS.gene99717:CDS |
| TATGCTGAACGGGTGGGTTT+TGG | 0.279098 | 5.2:-62213333 | MS.gene99717:CDS |
| TTAGATCGAACAAGAATATA+GGG | 0.302032 | 5.2:-62213074 | MS.gene99717:CDS |
| TGCGTTTGAGTTATAGGATT+TGG | 0.304891 | 5.2:+62213204 | None:intergenic |
| CGTTGAAGCAAATTCATAAA+AGG | 0.311900 | 5.2:+62211628 | None:intergenic |
| ATTTGAGTCTATTGATGAAT+TGG | 0.319207 | 5.2:-62213460 | MS.gene99717:CDS |
| CCTCGTCATAAAATCACTTT+TGG | 0.328109 | 5.2:+62212369 | None:intergenic |
| AGGGTTGCATATGAATATTT+TGG | 0.328265 | 5.2:-62212760 | MS.gene99717:CDS |
| CAATCTTCTTCTACAATTGT+AGG | 0.328846 | 5.2:+62211521 | None:intergenic |
| TGATCAGTGATTATGGCATT+TGG | 0.345022 | 5.2:+62212553 | None:intergenic |
| TTTAGATCGAACAAGAATAT+AGG | 0.366556 | 5.2:-62213075 | MS.gene99717:CDS |
| AAGGGCGTCCTCCTTCTAAA+AGG | 0.371475 | 5.2:-62211448 | MS.gene99717:CDS |
| GGTTATGAAAATCTCACATT+TGG | 0.372887 | 5.2:-62212964 | MS.gene99717:CDS |
| CTCGTCATCGGTGGTGCTTA+TGG | 0.386946 | 5.2:-62212486 | MS.gene99717:CDS |
| ATATACTAGTCATGCAAATC+AGG | 0.391097 | 5.2:-62211143 | MS.gene99717:intron |
| CAAATGACTGCTGGCGTTCG+AGG | 0.395487 | 5.2:-62215017 | MS.gene99717:CDS |
| TATGTTTGTAGCAGTGAAAA+TGG | 0.396446 | 5.2:-62210735 | MS.gene99717:CDS |
| TCACGGTCAGTCTATGTTGT+TGG | 0.404856 | 5.2:-62212659 | MS.gene99717:CDS |
| CTAAAATACCTTGCTTTCCC+TGG | 0.410842 | 5.2:+62213093 | None:intergenic |
| GCAGCCGCTCCAGTGCCTTC+TGG | 0.414836 | 5.2:-62214973 | MS.gene99717:intron |
| TCTGTCTTGATCAGTGATTA+TGG | 0.417938 | 5.2:+62212546 | None:intergenic |
| CACGGTCAGTCTATGTTGTT+GGG | 0.420837 | 5.2:-62212658 | MS.gene99717:CDS |
| ATTTGTTGAGCGACATCGTT+GGG | 0.428935 | 5.2:-62212290 | MS.gene99717:CDS |
| ATATTTATTTGTTAAGTAAG+TGG | 0.436838 | 5.2:+62212717 | None:intergenic |
| TCTCAACTTGGTGATAGAAT+TGG | 0.438239 | 5.2:-62211196 | MS.gene99717:CDS |
| CCTTGTGATGGGATGTCATT+CGG | 0.449339 | 5.2:-62213390 | MS.gene99717:CDS |
| GTTGGGTCCCTGCATATGTA+AGG | 0.456247 | 5.2:-62212273 | MS.gene99717:CDS |
| CATAATCATGATCTAAGTCC+AGG | 0.457184 | 5.2:-62213111 | MS.gene99717:CDS |
| TGGTTGCTTCAAATGACTGC+TGG | 0.459608 | 5.2:-62215026 | MS.gene99717:CDS |
| CCTAAAGTAGCTCGAAGTAA+AGG | 0.460010 | 5.2:-62211467 | MS.gene99717:CDS |
| TTACAAGAATTATGCTGAAC+GGG | 0.461474 | 5.2:-62213343 | MS.gene99717:CDS |
| GCTCTGATTGAGGATGAGTT+TGG | 0.462757 | 5.2:-62215046 | None:intergenic |
| GTAGGAGATGTTTCATTACA+TGG | 0.465504 | 5.2:+62211539 | None:intergenic |
| AAGCAAGACGACTACGACTT+GGG | 0.474410 | 5.2:-62212912 | MS.gene99717:CDS |
| ACTCCAACAAAAGGAGCAAA+AGG | 0.476605 | 5.2:+62212688 | None:intergenic |
| AATGTGTCCCTTACATATGC+AGG | 0.477892 | 5.2:+62212265 | None:intergenic |
| TATAACTCAAACGCAGTGTA+AGG | 0.477984 | 5.2:-62213196 | MS.gene99717:CDS |
| AATGATTGTTTAGAAGCAAA+TGG | 0.480295 | 5.2:-62213432 | MS.gene99717:CDS |
| CTAAAGTAGCTCGAAGTAAA+GGG | 0.483371 | 5.2:-62211466 | MS.gene99717:CDS |
| ATGATAACGAATGGCTGAAA+GGG | 0.487120 | 5.2:-62212315 | MS.gene99717:CDS |
| TTTGTTGTATTAGTGCAAGA+AGG | 0.490969 | 5.2:-62213483 | MS.gene99717:intron |
| TTGGTTATTTAAGACATGGT+TGG | 0.493602 | 5.2:-62212596 | MS.gene99717:CDS |
| TAGGATCAAGAATGGTAGCT+TGG | 0.494392 | 5.2:+62211486 | None:intergenic |
| GATGTCATTCGGATCTGAAA+AGG | 0.494917 | 5.2:-62213379 | MS.gene99717:CDS |
| CGTTCGAGGAACTTCTCGCC+TGG | 0.498839 | 5.2:-62215003 | MS.gene99717:CDS |
| TTTGGGCAGATGCAAGATGT+AGG | 0.508990 | 5.2:-62212780 | MS.gene99717:CDS |
| GGAGCGGCTGCTCCGTCACC+AGG | 0.511446 | 5.2:+62214985 | None:intergenic |
| TCCTTTGTCGTTGAAGCAGA+TGG | 0.513029 | 5.2:-62212985 | MS.gene99717:CDS |
| AGCTACTTTAGGATCAAGAA+TGG | 0.514436 | 5.2:+62211478 | None:intergenic |
| AGGAACTTCTCGCCTGGTGA+CGG | 0.516252 | 5.2:-62214997 | MS.gene99717:CDS |
| CTTGACCTCTAGATGTACAT+TGG | 0.528356 | 5.2:+62211245 | None:intergenic |
| TGATGATTTACTCCAACAAA+AGG | 0.532909 | 5.2:+62212679 | None:intergenic |
| AAAGCAAGACGACTACGACT+TGG | 0.536463 | 5.2:-62212913 | MS.gene99717:CDS |
| ATCTAAGTCCAGGGAAAGCA+AGG | 0.538270 | 5.2:-62213101 | MS.gene99717:CDS |
| CATGATAACGAATGGCTGAA+AGG | 0.538477 | 5.2:-62212316 | MS.gene99717:CDS |
| AAGAATTATGCTGAACGGGT+GGG | 0.547191 | 5.2:-62213339 | MS.gene99717:CDS |
| AGCATAATTCTTGTAATACT+CGG | 0.547475 | 5.2:+62213350 | None:intergenic |
| TTCTGAAAGCTCGTCATCGG+TGG | 0.553870 | 5.2:-62212495 | MS.gene99717:CDS |
| CAAGAATTATGCTGAACGGG+TGG | 0.555569 | 5.2:-62213340 | MS.gene99717:CDS |
| TTAGAACTCAATGATCAAGC+TGG | 0.558672 | 5.2:-62213033 | MS.gene99717:CDS |
| TTGGGCAGATGCAAGATGTA+GGG | 0.563104 | 5.2:-62212779 | MS.gene99717:CDS |
| TCTTTCTGAAAGCTCGTCAT+CGG | 0.565576 | 5.2:-62212498 | MS.gene99717:CDS |
| AGACGACTACGACTTGGGAC+AGG | 0.570488 | 5.2:-62212907 | MS.gene99717:CDS |
| TCTCGCTTACCAGAAGGCAC+TGG | 0.575927 | 5.2:+62214964 | None:intergenic |
| TAGAACTCAATGATCAAGCT+GGG | 0.577189 | 5.2:-62213032 | MS.gene99717:CDS |
| ACAAACTACATGATAACGAA+TGG | 0.581342 | 5.2:-62212324 | MS.gene99717:CDS |
| CTGCTTCAACGACAAAGGAT+CGG | 0.586561 | 5.2:+62212989 | None:intergenic |
| AAATATTCAAGTTCAAGAAG+AGG | 0.587967 | 5.2:-62211348 | MS.gene99717:intron |
| TATTTGTTGAGCGACATCGT+TGG | 0.591607 | 5.2:-62212291 | MS.gene99717:CDS |
| ACCATCTGCTTCAACGACAA+AGG | 0.593984 | 5.2:+62212984 | None:intergenic |
| TTGTGCTCTGTTGTCAAATG+AGG | 0.594293 | 5.2:-62212635 | MS.gene99717:CDS |
| ATTACAAGAATTATGCTGAA+CGG | 0.604383 | 5.2:-62213344 | MS.gene99717:CDS |
| TTACTTGGTTATTTAAGACA+TGG | 0.615688 | 5.2:-62212600 | MS.gene99717:CDS |
| TTGGGTCCCTGCATATGTAA+GGG | 0.619298 | 5.2:-62212272 | MS.gene99717:CDS |
| ATGTGTCCCTTACATATGCA+GGG | 0.621051 | 5.2:+62212266 | None:intergenic |
| AAGAAGAAACACCTTGTGAT+GGG | 0.621474 | 5.2:-62213401 | MS.gene99717:CDS |
| ATATAGGGGCACAAATGAAG+AGG | 0.627813 | 5.2:-62213059 | MS.gene99717:CDS |
| GAAGAAGAAACACCTTGTGA+TGG | 0.629834 | 5.2:-62213402 | MS.gene99717:CDS |
| TAGATCGAACAAGAATATAG+GGG | 0.631587 | 5.2:-62213073 | MS.gene99717:CDS |
| CCGAATGACATCCCATCACA+AGG | 0.631658 | 5.2:+62213390 | None:intergenic |
| CAGGGCCAATGTACATCTAG+AGG | 0.633528 | 5.2:-62211250 | MS.gene99717:CDS |
| TAGGGGCACAAATGAAGAGG+AGG | 0.634884 | 5.2:-62213056 | MS.gene99717:CDS |
| ATAATCATGATCTAAGTCCA+GGG | 0.638934 | 5.2:-62213110 | MS.gene99717:CDS |
| TTTGTTGGAGTAAATCATCA+CGG | 0.639777 | 5.2:-62212676 | MS.gene99717:CDS |
| TGGATGTGGATGATGAAAGT+CGG | 0.645394 | 5.2:-62212816 | MS.gene99717:CDS |
| ACATGGTTGGAATGTATGCA+TGG | 0.656661 | 5.2:-62212583 | MS.gene99717:CDS |
| TGATAGACTCGTAGTCAGAG+TGG | 0.680581 | 5.2:+62212428 | None:intergenic |
| CTTACCAGAAGGCACTGGAG+CGG | 0.681053 | 5.2:+62214969 | None:intergenic |
| TTTATGAATTTGCTTCAACG+AGG | 0.719121 | 5.2:-62211625 | MS.gene99717:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATAAGTTCAAAAAA+AGG | - | chr5.2:62212389-62212408 | MS.gene99717:CDS | 10.0% |
| !! | AATTTATATCAAATATTAAG+TGG | + | chr5.2:62211476-62211495 | None:intergenic | 10.0% |
| !! | ATAGTATTTATTGATATTAT+AGG | - | chr5.2:62214384-62214403 | MS.gene99717:intron | 10.0% |
| !! | TCATTTAATTAAAAAATGAT+TGG | - | chr5.2:62214851-62214870 | MS.gene99717:intron | 10.0% |
| !!! | ATTAATACATTAAATTTTAG+AGG | - | chr5.2:62211511-62211530 | MS.gene99717:CDS | 10.0% |
| !!! | CTTGAATATTTTTATTATTT+TGG | + | chr5.2:62214338-62214357 | None:intergenic | 10.0% |
| !!! | TTTTTTTTAATTTTTGTTGT+GGG | - | chr5.2:62210956-62210975 | MS.gene99717:intron | 10.0% |
| !!! | TTTTTTTTTAATTTTTGTTG+TGG | - | chr5.2:62210955-62210974 | MS.gene99717:intron | 10.0% |
| !! | ATTGAAAGATAAAATTGAAA+AGG | - | chr5.2:62213564-62213583 | MS.gene99717:intron | 15.0% |
| !! | TAAATGAAAAATCAATCAAT+CGG | + | chr5.2:62212147-62212166 | None:intergenic | 15.0% |
| !! | TAAATTGAATTCTAATTTGA+GGG | - | chr5.2:62211444-62211463 | MS.gene99717:CDS | 15.0% |
| !!! | AATTTCCCTTTAAAAAAATA+AGG | - | chr5.2:62211398-62211417 | MS.gene99717:CDS | 15.0% |
| !!! | ATATTTATTTGTTAAGTAAG+TGG | + | chr5.2:62212981-62213000 | None:intergenic | 15.0% |
| !!! | ATTTTTTTAAAGGGAAATTT+AGG | + | chr5.2:62211397-62211416 | None:intergenic | 15.0% |
| !!! | GTCTAATTTAAGAATTTTTA+TGG | - | chr5.2:62214422-62214441 | MS.gene99717:intron | 15.0% |
| !!! | TAATTTAATTTTCATTTCTC+TGG | + | chr5.2:62211782-62211801 | None:intergenic | 15.0% |
| !! | AATGCTTGTATTTATTTAGA+TGG | - | chr5.2:62212530-62212549 | MS.gene99717:CDS | 20.0% |
| !! | ATAAAATGGGAAATGATAAT+TGG | - | chr5.2:62211683-62211702 | MS.gene99717:intron | 20.0% |
| !! | CTAAATTGAATTCTAATTTG+AGG | - | chr5.2:62211443-62211462 | MS.gene99717:CDS | 20.0% |
| !! | CTCAAATTAGAATTCAATTT+AGG | + | chr5.2:62211445-62211464 | None:intergenic | 20.0% |
| !! | CTGTGTTAGTTAATTAATAT+AGG | - | chr5.2:62212172-62212191 | MS.gene99717:intron | 20.0% |
| !! | GGCTATTAAAAAAACAATTT+AGG | + | chr5.2:62211424-62211443 | None:intergenic | 20.0% |
| !! | TTAAATGAAAGTAAGAAATC+AGG | + | chr5.2:62214839-62214858 | None:intergenic | 20.0% |
| !! | TTAGGTATCAAATTATTGAT+GGG | - | chr5.2:62214784-62214803 | MS.gene99717:intron | 20.0% |
| !!! | AATTTAAGAATTTTTATGGC+AGG | - | chr5.2:62214426-62214445 | MS.gene99717:intron | 20.0% |
| !!! | ATTATAGTTTTTTCTATGAC+AGG | - | chr5.2:62214716-62214735 | MS.gene99717:intron | 20.0% |
| !!! | ATTTAAGAATTTTTATGGCA+GGG | - | chr5.2:62214427-62214446 | MS.gene99717:intron | 20.0% |
| !!! | CAATACAAAAATATTTTGTG+AGG | - | chr5.2:62212822-62212841 | MS.gene99717:CDS | 20.0% |
| !!! | TAAATGTGGTTTTGATAATT+TGG | - | chr5.2:62214002-62214021 | MS.gene99717:intron | 20.0% |
| !!! | TGTTTTTATAGATCATTAGT+AGG | - | chr5.2:62212112-62212131 | MS.gene99717:intron | 20.0% |
| !!! | TTAGGCCTTATTTTTTTAAA+GGG | + | chr5.2:62211406-62211425 | None:intergenic | 20.0% |
| !!! | TTATAGTTTTTTCTATGACA+GGG | - | chr5.2:62214717-62214736 | MS.gene99717:intron | 20.0% |
| !!! | TTTAGGCCTTATTTTTTTAA+AGG | + | chr5.2:62211407-62211426 | None:intergenic | 20.0% |
| ! | AAAAAGATTCCAGAAAAGTT+TGG | - | chr5.2:62213241-62213260 | MS.gene99717:CDS | 25.0% |
| ! | AAAGTTTAAGGAATTCCAAT+TGG | - | chr5.2:62213681-62213700 | MS.gene99717:intron | 25.0% |
| ! | AATGATTGTTTAGAAGCAAA+TGG | - | chr5.2:62212263-62212282 | MS.gene99717:CDS | 25.0% |
| ! | AGCATAATTCTTGTAATACT+CGG | + | chr5.2:62212348-62212367 | None:intergenic | 25.0% |
| ! | AGGTATACACTTATTAAATG+TGG | - | chr5.2:62213988-62214007 | MS.gene99717:intron | 25.0% |
| ! | ATAAGATAAGAGAGAAAAAG+CGG | + | chr5.2:62211052-62211071 | None:intergenic | 25.0% |
| ! | ATATAACCATTCAACCATTT+AGG | + | chr5.2:62214639-62214658 | None:intergenic | 25.0% |
| ! | ATTACAAGAATTATGCTGAA+CGG | - | chr5.2:62212351-62212370 | MS.gene99717:CDS | 25.0% |
| ! | ATTAGTCCACTGAAATAAAA+TGG | - | chr5.2:62211669-62211688 | MS.gene99717:intron | 25.0% |
| ! | ATTTACCAATGCAAAGTTTA+AGG | - | chr5.2:62213669-62213688 | MS.gene99717:intron | 25.0% |
| ! | ATTTCTTGTATTAGTCACTT+TGG | - | chr5.2:62213622-62213641 | MS.gene99717:intron | 25.0% |
| ! | ATTTGAGTCTATTGATGAAT+TGG | - | chr5.2:62212235-62212254 | MS.gene99717:CDS | 25.0% |
| ! | CTTAGGTATCAAATTATTGA+TGG | - | chr5.2:62214783-62214802 | MS.gene99717:intron | 25.0% |
| ! | GATGAAAGATATTATGTTCA+TGG | - | chr5.2:62213801-62213820 | MS.gene99717:intron | 25.0% |
| ! | TTAGATCGAACAAGAATATA+GGG | - | chr5.2:62212621-62212640 | MS.gene99717:CDS | 25.0% |
| ! | TTAGTCCACTGAAATAAAAT+GGG | - | chr5.2:62211670-62211689 | MS.gene99717:intron | 25.0% |
| ! | TTTAGAGGAATTAATACCAT+TGG | - | chr5.2:62211526-62211545 | MS.gene99717:CDS | 25.0% |
| ! | TTTAGATCGAACAAGAATAT+AGG | - | chr5.2:62212620-62212639 | MS.gene99717:CDS | 25.0% |
| !! | AAATATTCAAGTTCAAGAAG+AGG | - | chr5.2:62214347-62214366 | MS.gene99717:intron | 25.0% |
| !! | AATCCAAATCAAGAACATTT+TGG | - | chr5.2:62215008-62215027 | MS.gene99717:CDS | 25.0% |
| !! | CAGTCAATTTTATTATGTGA+TGG | - | chr5.2:62212859-62212878 | MS.gene99717:CDS | 25.0% |
| !! | GAAAATGGTGAAAATTTTAG+CGG | - | chr5.2:62210986-62211005 | MS.gene99717:intron | 25.0% |
| !! | TTACTTGGTTATTTAAGACA+TGG | - | chr5.2:62213095-62213114 | MS.gene99717:CDS | 25.0% |
| !!! | AAGGGTATCATTTCTATTAA+AGG | + | chr5.2:62211822-62211841 | None:intergenic | 25.0% |
| !!! | ATTTTATTATGTGATGGATG+TGG | - | chr5.2:62212865-62212884 | MS.gene99717:CDS | 25.0% |
| !!! | CATCTAATTATATTTTGGCA+CGG | - | chr5.2:62213944-62213963 | MS.gene99717:intron | 25.0% |
| !!! | TGGTAAATGCTTTTTGAAAT+TGG | + | chr5.2:62213657-62213676 | None:intergenic | 25.0% |
| !!! | TGTTTTGACAAGAATAAACA+CGG | - | chr5.2:62211712-62211731 | MS.gene99717:intron | 25.0% |
| AAGTTCAAAAAAAGGAGATG+AGG | - | chr5.2:62212397-62212416 | MS.gene99717:CDS | 30.0% | |
| ACAACAATGATCTACATCTT+GGG | - | chr5.2:62211268-62211287 | MS.gene99717:intron | 30.0% | |
| AGAAATTTGCCATATAGCAA+CGG | + | chr5.2:62211150-62211169 | None:intergenic | 30.0% | |
| AGCAACTGAAATTTCAAACA+GGG | + | chr5.2:62211081-62211100 | None:intergenic | 30.0% | |
| AGTTCAAAAAAAGGAGATGA+GGG | - | chr5.2:62212398-62212417 | MS.gene99717:CDS | 30.0% | |
| ATAATCATGATCTAAGTCCA+GGG | - | chr5.2:62212585-62212604 | MS.gene99717:CDS | 30.0% | |
| ATATACTAGTCATGCAAATC+AGG | - | chr5.2:62214552-62214571 | MS.gene99717:intron | 30.0% | |
| ATCAAATTATTGATGGGACT+GGG | - | chr5.2:62214790-62214809 | MS.gene99717:intron | 30.0% | |
| ATGGGAAATGATAATTGGTA+CGG | - | chr5.2:62211688-62211707 | MS.gene99717:intron | 30.0% | |
| CAATCTTCTTCTACAATTGT+AGG | + | chr5.2:62214177-62214196 | None:intergenic | 30.0% | |
| CGTGCCAAAATATAATTAGA+TGG | + | chr5.2:62213946-62213965 | None:intergenic | 30.0% | |
| CGTTGAAGCAAATTCATAAA+AGG | + | chr5.2:62214070-62214089 | None:intergenic | 30.0% | |
| CTACAAATGAAGAGTTTCTT+AGG | - | chr5.2:62214766-62214785 | MS.gene99717:intron | 30.0% | |
| GAAATATTCATTTGACTCCA+AGG | + | chr5.2:62211016-62211035 | None:intergenic | 30.0% | |
| GAATTCCTTAAACTTTGCAT+TGG | + | chr5.2:62213677-62213696 | None:intergenic | 30.0% | |
| GGTGCAAATATAAGATTCAT+TGG | - | chr5.2:62214573-62214592 | MS.gene99717:intron | 30.0% | |
| GGTTATGAAAATCTCACATT+TGG | - | chr5.2:62212731-62212750 | MS.gene99717:CDS | 30.0% | |
| GTTGTGGGAATTAAAGAAAA+TGG | - | chr5.2:62210971-62210990 | MS.gene99717:intron | 30.0% | |
| TAAGATAAGAGAGAAAAAGC+GGG | + | chr5.2:62211051-62211070 | None:intergenic | 30.0% | |
| TACAACAATGATCTACATCT+TGG | - | chr5.2:62211267-62211286 | MS.gene99717:intron | 30.0% | |
| TAGATCGAACAAGAATATAG+GGG | - | chr5.2:62212622-62212641 | MS.gene99717:CDS | 30.0% | |
| TATCAAATTATTGATGGGAC+TGG | - | chr5.2:62214789-62214808 | MS.gene99717:intron | 30.0% | |
| TATGTTTGTAGCAGTGAAAA+TGG | - | chr5.2:62214960-62214979 | MS.gene99717:intron | 30.0% | |
| TCACTTCATTAAGAAACCAA+TGG | + | chr5.2:62211545-62211564 | None:intergenic | 30.0% | |
| TGACCAAAATGTTCTTGATT+TGG | + | chr5.2:62215014-62215033 | None:intergenic | 30.0% | |
| TGATGATTTACTCCAACAAA+AGG | + | chr5.2:62213019-62213038 | None:intergenic | 30.0% | |
| TGCATGTTAATATCTATACC+AGG | - | chr5.2:62214929-62214948 | MS.gene99717:intron | 30.0% | |
| TTACAAGAATTATGCTGAAC+GGG | - | chr5.2:62212352-62212371 | MS.gene99717:CDS | 30.0% | |
| TTTAAATTCAAACAAGCAGC+AGG | + | chr5.2:62213863-62213882 | None:intergenic | 30.0% | |
| TTTGTTGGAGTAAATCATCA+CGG | - | chr5.2:62213019-62213038 | MS.gene99717:CDS | 30.0% | |
| ! | ACAAACTACATGATAACGAA+TGG | - | chr5.2:62213371-62213390 | MS.gene99717:CDS | 30.0% |
| ! | AGGATACTGAAACTTTTACT+TGG | - | chr5.2:62213080-62213099 | MS.gene99717:CDS | 30.0% |
| ! | AGGGTTGCATATGAATATTT+TGG | - | chr5.2:62212935-62212954 | MS.gene99717:CDS | 30.0% |
| ! | ATAAAGAGAGTAGAGAGTAT+TGG | - | chr5.2:62211244-62211263 | MS.gene99717:CDS | 30.0% |
| ! | ATAGAAGTCTTCCTTTTAGA+AGG | + | chr5.2:62214261-62214280 | None:intergenic | 30.0% |
| ! | ATATGTAAGGGACACATTTT+GGG | - | chr5.2:62213435-62213454 | MS.gene99717:CDS | 30.0% |
| ! | CGTGCCATCTAATTATATTT+TGG | - | chr5.2:62213939-62213958 | MS.gene99717:intron | 30.0% |
| ! | CTTTTTACTACGGTTACTAA+AGG | - | chr5.2:62211121-62211140 | MS.gene99717:intron | 30.0% |
| ! | GTAGTTATTTAGTTCGATTG+TGG | + | chr5.2:62211221-62211240 | None:intergenic | 30.0% |
| ! | TCATAGAAGCTATTTCCAAT+TGG | + | chr5.2:62213699-62213718 | None:intergenic | 30.0% |
| ! | TGCTGCTTGTTTGAATTTAA+AGG | - | chr5.2:62213862-62213881 | MS.gene99717:intron | 30.0% |
| ! | TGGATAGGGTTTTACAATTT+GGG | - | chr5.2:62210849-62210868 | MS.gene99717:intron | 30.0% |
| ! | TTGGTTATTTAAGACATGGT+TGG | - | chr5.2:62213099-62213118 | MS.gene99717:CDS | 30.0% |
| ! | TTTATGAATTTGCTTCAACG+AGG | - | chr5.2:62214070-62214089 | MS.gene99717:intron | 30.0% |
| ! | TTTGTTGTATTAGTGCAAGA+AGG | - | chr5.2:62212212-62212231 | MS.gene99717:intron | 30.0% |
| !! | ACATTTTGGTCAAGTAAACA+AGG | - | chr5.2:62215022-62215041 | MS.gene99717:CDS | 30.0% |
| !! | CATTTCCCATTTTATTTCAG+TGG | + | chr5.2:62211678-62211697 | None:intergenic | 30.0% |
| !! | TATAGCAACGCTTTTTACTA+CGG | - | chr5.2:62211111-62211130 | MS.gene99717:intron | 30.0% |
| !!! | AGTATGAACTCGTTTTTTGA+TGG | - | chr5.2:62213487-62213506 | MS.gene99717:intron | 30.0% |
| AAAACTGAATTGCAACGTGT+AGG | - | chr5.2:62214030-62214049 | MS.gene99717:intron | 35.0% | |
| AAGAAAAACCCAAATCACAC+AGG | + | chr5.2:62210928-62210947 | None:intergenic | 35.0% | |
| AAGAAGAAACACCTTGTGAT+GGG | - | chr5.2:62212294-62212313 | MS.gene99717:CDS | 35.0% | |
| AATTCACAGAGAATGAGACA+AGG | - | chr5.2:62210770-62210789 | MS.gene99717:intron | 35.0% | |
| AGGTGTTAAGAAAGTGGATA+GGG | - | chr5.2:62210835-62210854 | MS.gene99717:intron | 35.0% | |
| AGTGAATTTGAGGGAATTTG+GGG | - | chr5.2:62210798-62210817 | MS.gene99717:intron | 35.0% | |
| AGTGTGAACATAGTCCTAAA+TGG | - | chr5.2:62214622-62214641 | MS.gene99717:intron | 35.0% | |
| ATATGAGATCTGATTCACAG+AGG | + | chr5.2:62211978-62211997 | None:intergenic | 35.0% | |
| CAGCAACTGAAATTTCAAAC+AGG | + | chr5.2:62211082-62211101 | None:intergenic | 35.0% | |
| CATAATCATGATCTAAGTCC+AGG | - | chr5.2:62212584-62212603 | MS.gene99717:CDS | 35.0% | |
| CATAGTCCTAAATGGTTGAA+TGG | - | chr5.2:62214630-62214649 | MS.gene99717:intron | 35.0% | |
| CTAAAGTAGCTCGAAGTAAA+GGG | - | chr5.2:62214229-62214248 | MS.gene99717:intron | 35.0% | |
| GAGTGAATTTGAGGGAATTT+GGG | - | chr5.2:62210797-62210816 | MS.gene99717:intron | 35.0% | |
| GCAACTGAAATTTCAAACAG+GGG | + | chr5.2:62211080-62211099 | None:intergenic | 35.0% | |
| GCTTTAGTGCTATGAATCAA+TGG | + | chr5.2:62212042-62212061 | None:intergenic | 35.0% | |
| GGAGTCAAATGAATATTTCG+TGG | - | chr5.2:62211017-62211036 | MS.gene99717:intron | 35.0% | |
| GTAGGAGATGTTTCATTACA+TGG | + | chr5.2:62214159-62214178 | None:intergenic | 35.0% | |
| GTTCAAAAAAAGGAGATGAG+GGG | - | chr5.2:62212399-62212418 | MS.gene99717:CDS | 35.0% | |
| TAGAACTCAATGATCAAGCT+GGG | - | chr5.2:62212663-62212682 | MS.gene99717:CDS | 35.0% | |
| TATAACTCAAACGCAGTGTA+AGG | - | chr5.2:62212499-62212518 | MS.gene99717:CDS | 35.0% | |
| TCATGCATGTTTCAACAGAT+TGG | - | chr5.2:62213726-62213745 | MS.gene99717:intron | 35.0% | |
| TCTGTCTTGATCAGTGATTA+TGG | + | chr5.2:62213152-62213171 | None:intergenic | 35.0% | |
| TGAATCAATGGATGTTGTGA+TGG | + | chr5.2:62212030-62212049 | None:intergenic | 35.0% | |
| TGATCAGTGATTATGGCATT+TGG | + | chr5.2:62213145-62213164 | None:intergenic | 35.0% | |
| TTAGAACTCAATGATCAAGC+TGG | - | chr5.2:62212662-62212681 | MS.gene99717:CDS | 35.0% | |
| TTTGTGTGCTTAAGCTCATA+GGG | - | chr5.2:62213905-62213924 | MS.gene99717:intron | 35.0% | |
| ! | AAAGTGATTTTATGACGAGG+TGG | - | chr5.2:62213329-62213348 | MS.gene99717:CDS | 35.0% |
| ! | AAGGTTTGGAGTGAATTTGA+GGG | - | chr5.2:62210789-62210808 | MS.gene99717:intron | 35.0% |
| ! | AAGTGATTTTATGACGAGGT+GGG | - | chr5.2:62213330-62213349 | MS.gene99717:CDS | 35.0% |
| ! | ATGATAACGAATGGCTGAAA+GGG | - | chr5.2:62213380-62213399 | MS.gene99717:CDS | 35.0% |
| ! | CATATGTAAGGGACACATTT+TGG | - | chr5.2:62213434-62213453 | MS.gene99717:CDS | 35.0% |
| ! | CCAAAAGTGATTTTATGACG+AGG | - | chr5.2:62213326-62213345 | MS.gene99717:CDS | 35.0% |
| ! | CCTCGTCATAAAATCACTTT+TGG | + | chr5.2:62213329-62213348 | None:intergenic | 35.0% |
| ! | GTGGATAGGGTTTTACAATT+TGG | - | chr5.2:62210848-62210867 | MS.gene99717:intron | 35.0% |
| ! | GTGTTTTACAGATCTCAACT+TGG | - | chr5.2:62214487-62214506 | MS.gene99717:intron | 35.0% |
| ! | TCAATCAGTCTTTGATTCGT+GGG | + | chr5.2:62211895-62211914 | None:intergenic | 35.0% |
| ! | TCGGTTACGAAATGTGTTTT+GGG | - | chr5.2:62212898-62212917 | MS.gene99717:CDS | 35.0% |
| ! | TCTCAACTTGGTGATAGAAT+TGG | - | chr5.2:62214499-62214518 | MS.gene99717:intron | 35.0% |
| ! | TGCGTTTGAGTTATAGGATT+TGG | + | chr5.2:62212494-62212513 | None:intergenic | 35.0% |
| ! | TTACACTGCGTTTGAGTTAT+AGG | + | chr5.2:62212500-62212519 | None:intergenic | 35.0% |
| ! | TTCAATCAGTCTTTGATTCG+TGG | + | chr5.2:62211896-62211915 | None:intergenic | 35.0% |
| !! | AGAAAGAGGTGTTAAGAAAG+TGG | - | chr5.2:62210829-62210848 | MS.gene99717:intron | 35.0% |
| !! | AGCTACTTTAGGATCAAGAA+TGG | + | chr5.2:62214220-62214239 | None:intergenic | 35.0% |
| !!! | AAAATTTTAGCGGACTTCCT+TGG | - | chr5.2:62210996-62211015 | MS.gene99717:intron | 35.0% |
| !!! | ACGTAGCTTTGTTTTTGTGA+AGG | + | chr5.2:62211841-62211860 | None:intergenic | 35.0% |
| !!! | CGTAGCTTTGTTTTTGTGAA+GGG | + | chr5.2:62211840-62211859 | None:intergenic | 35.0% |
| !!! | CTAATTATATTTTGGCACGG+TGG | - | chr5.2:62213947-62213966 | MS.gene99717:intron | 35.0% |
| !!! | TGTGGTTTTGATAATTTGGC+TGG | - | chr5.2:62214006-62214025 | MS.gene99717:intron | 35.0% |
| AAGAATTATGCTGAACGGGT+GGG | - | chr5.2:62212356-62212375 | MS.gene99717:CDS | 40.0% | |
| AATGTGTCCCTTACATATGC+AGG | + | chr5.2:62213433-62213452 | None:intergenic | 40.0% | |
| ACAGAGAATGAGACAAGGTT+TGG | - | chr5.2:62210775-62210794 | MS.gene99717:intron | 40.0% | |
| ACATGGTTGGAATGTATGCA+TGG | - | chr5.2:62213112-62213131 | MS.gene99717:CDS | 40.0% | |
| ACTCCAACAAAAGGAGCAAA+AGG | + | chr5.2:62213010-62213029 | None:intergenic | 40.0% | |
| AGCTGAAACAGAGTTATGTG+AGG | + | chr5.2:62212005-62212024 | None:intergenic | 40.0% | |
| ATGTGTCCCTTACATATGCA+GGG | + | chr5.2:62213432-62213451 | None:intergenic | 40.0% | |
| CCTAAAGTAGCTCGAAGTAA+AGG | - | chr5.2:62214228-62214247 | MS.gene99717:intron | 40.0% | |
| CTAAAATACCTTGCTTTCCC+TGG | + | chr5.2:62212605-62212624 | None:intergenic | 40.0% | |
| CTATGAGCTTAAGCACACAA+AGG | + | chr5.2:62213906-62213925 | None:intergenic | 40.0% | |
| CTTGACCTCTAGATGTACAT+TGG | + | chr5.2:62214453-62214472 | None:intergenic | 40.0% | |
| CTTTGTGTGCTTAAGCTCAT+AGG | - | chr5.2:62213904-62213923 | MS.gene99717:intron | 40.0% | |
| GAAGAAGAAACACCTTGTGA+TGG | - | chr5.2:62212293-62212312 | MS.gene99717:CDS | 40.0% | |
| GATGTCATTCGGATCTGAAA+AGG | - | chr5.2:62212316-62212335 | MS.gene99717:CDS | 40.0% | |
| GCAATGTGACTCATTGATAG+TGG | + | chr5.2:62211313-62211332 | None:intergenic | 40.0% | |
| GCATGTTTCAACAGATTGGA+GGG | - | chr5.2:62213730-62213749 | MS.gene99717:intron | 40.0% | |
| GGAGTGAATTTGAGGGAATT+TGG | - | chr5.2:62210796-62210815 | MS.gene99717:intron | 40.0% | |
| GTTACGTTCCTGTGTGATTT+GGG | - | chr5.2:62210917-62210936 | MS.gene99717:intron | 40.0% | |
| TAAAGGCTACCGTTGCTATA+TGG | - | chr5.2:62211138-62211157 | MS.gene99717:intron | 40.0% | |
| TAGGATCAAGAATGGTAGCT+TGG | + | chr5.2:62214212-62214231 | None:intergenic | 40.0% | |
| TGCATGTTTCAACAGATTGG+AGG | - | chr5.2:62213729-62213748 | MS.gene99717:intron | 40.0% | |
| TGGATGTGGATGATGAAAGT+CGG | - | chr5.2:62212879-62212898 | MS.gene99717:CDS | 40.0% | |
| TGGGAAAGAGGAAACAATTG+CGG | + | chr5.2:62211876-62211895 | None:intergenic | 40.0% | |
| TGTTACGTTCCTGTGTGATT+TGG | - | chr5.2:62210916-62210935 | MS.gene99717:intron | 40.0% | |
| TTGTGCTCTGTTGTCAAATG+AGG | - | chr5.2:62213060-62213079 | MS.gene99717:CDS | 40.0% | |
| TTTCAACAGATTGGAGGGTT+TGG | - | chr5.2:62213735-62213754 | MS.gene99717:intron | 40.0% | |
| ! | ATATAGGGGCACAAATGAAG+AGG | - | chr5.2:62212636-62212655 | MS.gene99717:CDS | 40.0% |
| ! | ATGCCTTTTGCTCCTTTTGT+TGG | - | chr5.2:62213004-62213023 | MS.gene99717:CDS | 40.0% |
| ! | ATTTGAGGGAATTTGGGGTT+TGG | - | chr5.2:62210803-62210822 | MS.gene99717:intron | 40.0% |
| ! | ATTTGTTGAGCGACATCGTT+GGG | - | chr5.2:62213405-62213424 | MS.gene99717:CDS | 40.0% |
| ! | CAAGGTTTGGAGTGAATTTG+AGG | - | chr5.2:62210788-62210807 | MS.gene99717:intron | 40.0% |
| ! | CATGATAACGAATGGCTGAA+AGG | - | chr5.2:62213379-62213398 | MS.gene99717:CDS | 40.0% |
| ! | CCTTTACTTCGAGCTACTTT+AGG | + | chr5.2:62214231-62214250 | None:intergenic | 40.0% |
| ! | GAGGTGTTAAGAAAGTGGAT+AGG | - | chr5.2:62210834-62210853 | MS.gene99717:intron | 40.0% |
| ! | GTCGGTTACGAAATGTGTTT+TGG | - | chr5.2:62212897-62212916 | MS.gene99717:CDS | 40.0% |
| ! | TACAAACATAGTTCTGCTCC+TGG | + | chr5.2:62214950-62214969 | None:intergenic | 40.0% |
| ! | TATTTGTTGAGCGACATCGT+TGG | - | chr5.2:62213404-62213423 | MS.gene99717:CDS | 40.0% |
| ! | TCTTTCTGAAAGCTCGTCAT+CGG | - | chr5.2:62213197-62213216 | MS.gene99717:CDS | 40.0% |
| ! | TTTGAGGGAATTTGGGGTTT+GGG | - | chr5.2:62210804-62210823 | MS.gene99717:intron | 40.0% |
| !! | GAAGTCTTCCTTTTAGAAGG+AGG | + | chr5.2:62214258-62214277 | None:intergenic | 40.0% |
| !! | GTGACTCATTGATAGTGGAT+TGG | + | chr5.2:62211308-62211327 | None:intergenic | 40.0% |
| !!! | ATTATATTTTGGCACGGTGG+AGG | - | chr5.2:62213950-62213969 | MS.gene99717:intron | 40.0% |
| AAAGAGGAAACAATTGCGGC+GGG | + | chr5.2:62211872-62211891 | None:intergenic | 45.0% | |
| AAAGCAAGACGACTACGACT+TGG | - | chr5.2:62212782-62212801 | MS.gene99717:CDS | 45.0% | |
| AAGCAAGACGACTACGACTT+GGG | - | chr5.2:62212783-62212802 | MS.gene99717:CDS | 45.0% | |
| ACCATCTGCTTCAACGACAA+AGG | + | chr5.2:62212714-62212733 | None:intergenic | 45.0% | |
| ATCTAAGTCCAGGGAAAGCA+AGG | - | chr5.2:62212594-62212613 | MS.gene99717:CDS | 45.0% | |
| CAAGAATTATGCTGAACGGG+TGG | - | chr5.2:62212355-62212374 | MS.gene99717:CDS | 45.0% | |
| CACGGTCAGTCTATGTTGTT+GGG | - | chr5.2:62213037-62213056 | MS.gene99717:CDS | 45.0% | |
| CTGCTTCAACGACAAAGGAT+CGG | + | chr5.2:62212709-62212728 | None:intergenic | 45.0% | |
| GAAAGAGGAAACAATTGCGG+CGG | + | chr5.2:62211873-62211892 | None:intergenic | 45.0% | |
| GGTGGAGGAAGGATATAAAG+CGG | - | chr5.2:62213965-62213984 | MS.gene99717:intron | 45.0% | |
| TCACGGTCAGTCTATGTTGT+TGG | - | chr5.2:62213036-62213055 | MS.gene99717:CDS | 45.0% | |
| TCCAAATCTCGCTTACCAGA+AGG | + | chr5.2:62210740-62210759 | None:intergenic | 45.0% | |
| TCCTTTGTCGTTGAAGCAGA+TGG | - | chr5.2:62212710-62212729 | MS.gene99717:CDS | 45.0% | |
| TCTGGTAAGCGAGATTTGGA+AGG | - | chr5.2:62210740-62210759 | MS.gene99717:CDS | 45.0% | |
| TGATAGACTCGTAGTCAGAG+TGG | + | chr5.2:62213270-62213289 | None:intergenic | 45.0% | |
| TGGTTGCTTCAAATGACTGC+TGG | - | chr5.2:62210669-62210688 | MS.gene99717:CDS | 45.0% | |
| TTGGGCAGATGCAAGATGTA+GGG | - | chr5.2:62212916-62212935 | MS.gene99717:CDS | 45.0% | |
| TTGGGTCCCTGCATATGTAA+GGG | - | chr5.2:62213423-62213442 | MS.gene99717:CDS | 45.0% | |
| TTTGGGCAGATGCAAGATGT+AGG | - | chr5.2:62212915-62212934 | MS.gene99717:CDS | 45.0% | |
| ! | CCTTGTGATGGGATGTCATT+CGG | - | chr5.2:62212305-62212324 | MS.gene99717:CDS | 45.0% |
| ! | GAGTGGCTACCAAACTTTTC+TGG | + | chr5.2:62213253-62213272 | None:intergenic | 45.0% |
| ! | GTCTTTGATTCGTGGGAAAG+AGG | + | chr5.2:62211888-62211907 | None:intergenic | 45.0% |
| !! | AGAGTTCTGAGTGAGAAGTC+AGG | - | chr5.2:62210887-62210906 | MS.gene99717:intron | 45.0% |
| !! | AAATTTAATGTATTAATTAT+AGG | + | chr5.2:62211508-62211527 | None:intergenic | 5.0% |
| CAGGGCCAATGTACATCTAG+AGG | - | chr5.2:62214445-62214464 | MS.gene99717:intron | 50.0% | |
| CCGAATGACATCCCATCACA+AGG | + | chr5.2:62212308-62212327 | None:intergenic | 50.0% | |
| GAAACTACAGCGCGTGGAAT+TGG | + | chr5.2:62211752-62211771 | None:intergenic | 50.0% | |
| GCCTTCTGGTAAGCGAGATT+TGG | - | chr5.2:62210736-62210755 | MS.gene99717:CDS | 50.0% | |
| GGAGGAAGGATATAAAGCGG+AGG | - | chr5.2:62213968-62213987 | MS.gene99717:intron | 50.0% | |
| GTTGGGTCCCTGCATATGTA+AGG | - | chr5.2:62213422-62213441 | MS.gene99717:CDS | 50.0% | |
| TTGGGGTTTGGGAGAGAAAG+AGG | - | chr5.2:62210815-62210834 | MS.gene99717:intron | 50.0% | |
| ! | GTAAGGGACACATTTTGGGC+TGG | - | chr5.2:62213439-62213458 | MS.gene99717:CDS | 50.0% |
| ! | TAGGGGCACAAATGAAGAGG+AGG | - | chr5.2:62212639-62212658 | MS.gene99717:CDS | 50.0% |
| ! | TTCTGAAAGCTCGTCATCGG+TGG | - | chr5.2:62213200-62213219 | MS.gene99717:CDS | 50.0% |
| !! | AAGGGCGTCCTCCTTCTAAA+AGG | - | chr5.2:62214247-62214266 | MS.gene99717:intron | 50.0% |
| !! | TATGCTGAACGGGTGGGTTT+TGG | - | chr5.2:62212362-62212381 | MS.gene99717:CDS | 50.0% |
| !!! | TATTTTGGCACGGTGGAGGA+AGG | - | chr5.2:62213954-62213973 | MS.gene99717:intron | 50.0% |
| AGGAACTTCTCGCCTGGTGA+CGG | - | chr5.2:62210698-62210717 | MS.gene99717:CDS | 55.0% | |
| CAAATGACTGCTGGCGTTCG+AGG | - | chr5.2:62210678-62210697 | MS.gene99717:CDS | 55.0% | |
| CAGTGAGAAACTACAGCGCG+TGG | + | chr5.2:62211758-62211777 | None:intergenic | 55.0% | |
| CTCGTCATCGGTGGTGCTTA+TGG | - | chr5.2:62213209-62213228 | MS.gene99717:CDS | 55.0% | |
| ! | AGACGACTACGACTTGGGAC+AGG | - | chr5.2:62212788-62212807 | MS.gene99717:CDS | 55.0% |
| ! | TCTCGCTTACCAGAAGGCAC+TGG | + | chr5.2:62210734-62210753 | None:intergenic | 55.0% |
| !! | CTTACCAGAAGGCACTGGAG+CGG | + | chr5.2:62210729-62210748 | None:intergenic | 55.0% |
| CGTTCGAGGAACTTCTCGCC+TGG | - | chr5.2:62210692-62210711 | MS.gene99717:CDS | 60.0% | |
| GGAAACAATTGCGGCGGGAG+TGG | + | chr5.2:62211867-62211886 | None:intergenic | 60.0% | |
| GCAGCCGCTCCAGTGCCTTC+TGG | - | chr5.2:62210722-62210741 | MS.gene99717:CDS | 70.0% | |
| GGAGCGGCTGCTCCGTCACC+AGG | + | chr5.2:62210713-62210732 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 62210662 | 62215055 | 62210662 | ID=MS.gene99717 |
| chr5.2 | mRNA | 62210662 | 62215055 | 62210662 | ID=MS.gene99717.t1;Parent=MS.gene99717 |
| chr5.2 | exon | 62214974 | 62215055 | 62214974 | ID=MS.gene99717.t1.exon1;Parent=MS.gene99717.t1 |
| chr5.2 | CDS | 62214974 | 62215055 | 62214974 | ID=cds.MS.gene99717.t1;Parent=MS.gene99717.t1 |
| chr5.2 | exon | 62212230 | 62213492 | 62212230 | ID=MS.gene99717.t1.exon2;Parent=MS.gene99717.t1 |
| chr5.2 | CDS | 62212230 | 62213492 | 62212230 | ID=cds.MS.gene99717.t1;Parent=MS.gene99717.t1 |
| chr5.2 | exon | 62211349 | 62211665 | 62211349 | ID=MS.gene99717.t1.exon3;Parent=MS.gene99717.t1 |
| chr5.2 | CDS | 62211349 | 62211665 | 62211349 | ID=cds.MS.gene99717.t1;Parent=MS.gene99717.t1 |
| chr5.2 | exon | 62211144 | 62211269 | 62211144 | ID=MS.gene99717.t1.exon4;Parent=MS.gene99717.t1 |
| chr5.2 | CDS | 62211144 | 62211269 | 62211144 | ID=cds.MS.gene99717.t1;Parent=MS.gene99717.t1 |
| chr5.2 | exon | 62210662 | 62210766 | 62210662 | ID=MS.gene99717.t1.exon5;Parent=MS.gene99717.t1 |
| chr5.2 | CDS | 62210662 | 62210766 | 62210662 | ID=cds.MS.gene99717.t1;Parent=MS.gene99717.t1 |
| Gene Sequence |
| Protein sequence |
