AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene99736

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene99736.t1 MTR_1g113720 79.461 297 17 2 63 329 142 424 8.22e-164 466
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene99736.t1 AT2G17033 44.932 296 128 4 63 330 157 445 1.49e-74 238
MS.gene99736.t1 AT2G17033 44.932 296 128 4 63 330 192 480 2.68e-74 238
MS.gene99736.t1 AT2G17033 44.932 296 128 4 63 330 191 479 2.82e-74 238
MS.gene99736.t1 AT2G17033 44.932 296 128 4 63 330 188 476 2.95e-74 238

Find 92 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATATGATTCTTTCAAGTTT+TGG 0.242120 1.2:+83846557 MS.gene99736:CDS
TTGAAGTAGCTCGGAAATTA+AGG 0.261967 1.2:-83846148 None:intergenic
AACCCAGCTTCGGAGCTGTT+TGG 0.290271 1.2:+83845604 MS.gene99736:CDS
ACCCAGCTTCGGAGCTGTTT+GGG 0.327268 1.2:+83845605 MS.gene99736:CDS
CTTACAAGGATGAGGAATTC+TGG 0.337094 1.2:+83846614 MS.gene99736:CDS
TGTTGTGGATTTGAATGATA+TGG 0.337816 1.2:+83846700 MS.gene99736:CDS
AAGGTAAGGCTGTCAAAATT+TGG 0.346114 1.2:+83847096 MS.gene99736:CDS
GTTGATGAAATGGAGAATAA+TGG 0.350749 1.2:+83846509 MS.gene99736:CDS
GCCGGTTTGAGAAGCGCGTT+TGG 0.359029 1.2:-83846231 None:intergenic
AGTATGTGGAAATGGTTTCT+TGG 0.378531 1.2:+83846591 MS.gene99736:CDS
AACAGCTCCGAAGCTGGGTT+TGG 0.380481 1.2:-83845601 None:intergenic
TTTGTATGGATATGGAAGAT+TGG 0.382413 1.2:+83846460 MS.gene99736:CDS
GCCTCGTGAGGCTGAGAATC+TGG 0.382565 1.2:+83846364 MS.gene99736:CDS
GGCCCAAACAGCTCCGAAGC+TGG 0.389642 1.2:-83845607 None:intergenic
TGTCGTGACTTTCTTGAAGC+TGG 0.391342 1.2:-83845676 None:intergenic
TTGATGAAATGGAGAATAAT+GGG 0.391709 1.2:+83846510 MS.gene99736:CDS
TTCGGAGCTGTTTGGGCCCA+CGG 0.392287 1.2:+83845612 MS.gene99736:CDS
GCTGTCAAAATTTGGTTATG+TGG 0.401088 1.2:+83847104 MS.gene99736:CDS
ATGGGAAGCTACGGTGGTTA+AGG 0.401506 1.2:+83846763 MS.gene99736:CDS
TTGTATGGATATGGAAGATT+GGG 0.404726 1.2:+83846461 MS.gene99736:CDS
GAACAGAGTTGTTGATGAAA+TGG 0.410686 1.2:+83846499 MS.gene99736:CDS
TGAGGCTGAGAATCTGGTTC+GGG 0.416550 1.2:+83846370 MS.gene99736:CDS
TCACGAGGAGTATGTGGAAA+TGG 0.423732 1.2:+83846583 MS.gene99736:CDS
AAGCTGGGAATTGTGGAGTT+GGG 0.424149 1.2:-83845660 None:intergenic
AAAAGTCACTCAGGATTGAT+AGG 0.430548 1.2:+83847048 MS.gene99736:CDS
TTTAAGACGAAGTACCTGTT+TGG 0.434507 1.2:-83845741 None:intergenic
CTCAACTCCAAACCCAGCTT+CGG 0.440584 1.2:+83845594 MS.gene99736:CDS
TCTCTTCTATGCAAAACTCT+TGG 0.446048 1.2:+83846199 MS.gene99736:CDS
GTGAGGCTGAGAATCTGGTT+CGG 0.450440 1.2:+83846369 MS.gene99736:CDS
GTCACGACAAATTATGCATT+GGG 0.451854 1.2:+83845690 MS.gene99736:CDS
CTGCTTTGTTGCCAAAGGTA+AGG 0.456812 1.2:+83847082 MS.gene99736:CDS
TGGGTTTGGAGTTGAGGAGG+AGG 0.457009 1.2:-83845587 None:intergenic
CTGAAATCACTGTGGTCTGT+GGG 0.457071 1.2:+83846953 MS.gene99736:CDS
TCCAAACGCGCTTCTCAAAC+CGG 0.458542 1.2:+83846230 MS.gene99736:CDS
CGAAGCTGGGTTTGGAGTTG+AGG 0.458757 1.2:-83845593 None:intergenic
GTCGTGACTTTCTTGAAGCT+GGG 0.459431 1.2:-83845675 None:intergenic
CAACATTCCTCATTATCGTT+GGG 0.462227 1.2:-83846682 None:intergenic
ATCACTGTGGTCTGTGGGGT+TGG 0.474623 1.2:+83846958 MS.gene99736:CDS
TCTTTAAGCAATACTTTGAC+CGG 0.476216 1.2:-83847009 None:intergenic
GCTTATGAATCCATGGTTAG+TGG 0.476513 1.2:+83846323 MS.gene99736:CDS
TTTCTTGAAGCTGGGAATTG+TGG 0.478358 1.2:-83845667 None:intergenic
AAATGGTTTCTTGGCTTACA+AGG 0.492833 1.2:+83846600 MS.gene99736:CDS
AGAGTTGTTGAATGTGTGTA+TGG 0.492964 1.2:+83846736 MS.gene99736:CDS
TTGAAGAGGAAGTGTGAAGA+AGG 0.494562 1.2:-83846283 None:intergenic
GAAGCTGGGAATTGTGGAGT+TGG 0.496289 1.2:-83845661 None:intergenic
CGTTGGGCAAGAATTTGAAA+CGG 0.501944 1.2:-83846666 None:intergenic
TTATAAGTTCTAACAGAAAA+CGG 0.505009 1.2:-83846641 None:intergenic
GAGCTGTTTGGGCCCACGGT+GGG 0.507584 1.2:+83845616 MS.gene99736:CDS
ACAACATTCCTCATTATCGT+TGG 0.508259 1.2:-83846683 None:intergenic
AAATTTGGTTATGTGGATTG+AGG 0.508615 1.2:+83847111 MS.gene99736:CDS
GCCCAAACAGCTCCGAAGCT+GGG 0.509459 1.2:-83845606 None:intergenic
TGGAATTCACGAGGAGTATG+TGG 0.512841 1.2:+83846577 MS.gene99736:CDS
TTTCTTGGCTTACAAGGATG+AGG 0.513035 1.2:+83846606 MS.gene99736:CDS
ACTCCACCGCTATTCCAAAC+AGG 0.514918 1.2:+83845727 MS.gene99736:CDS
AGTCACGACAAATTATGCAT+TGG 0.518635 1.2:+83845689 MS.gene99736:CDS
TGAATGTGTGTATGGAAGGA+TGG 0.520905 1.2:+83846744 MS.gene99736:CDS
TTTAAACAAACAGATGGTGG+TGG 0.536003 1.2:+83846395 MS.gene99736:CDS
TTGTGGAGTTGGGGAAAACG+TGG 0.536060 1.2:-83845650 None:intergenic
GCTGAAATCACTGTGGTCTG+TGG 0.537614 1.2:+83846952 MS.gene99736:CDS
ATTCTTGCCCAACGATAATG+AGG 0.542535 1.2:+83846675 MS.gene99736:CDS
AGCTGGGAATTGTGGAGTTG+GGG 0.546834 1.2:-83845659 None:intergenic
CGGGAATTTAAACAAACAGA+TGG 0.561502 1.2:+83846389 MS.gene99736:CDS
GCGTTTGACGTAAATTGAAG+AGG 0.567328 1.2:-83846297 None:intergenic
TTGTTGAATGTGTGTATGGA+AGG 0.568777 1.2:+83846740 MS.gene99736:CDS
AGCTGGGTTTGGAGTTGAGG+AGG 0.578160 1.2:-83845590 None:intergenic
ACGCAGAGCTTATGAATCCA+TGG 0.582181 1.2:+83846316 MS.gene99736:CDS
CAGACCACAGTGATTTCAGC+AGG 0.584643 1.2:-83846949 None:intergenic
AACGATAATGAGGAATGTTG+TGG 0.586263 1.2:+83846685 MS.gene99736:CDS
GGTTGGAGGAGATGCAGAAG+AGG 0.586274 1.2:+83846899 MS.gene99736:intron
TGCACACAATCCACTAACCA+TGG 0.593701 1.2:-83846333 None:intergenic
ACTGGCTGCTTTGTTGCCAA+AGG 0.597676 1.2:+83847077 MS.gene99736:CDS
ATGAAGATGAAAAGTCACTC+AGG 0.599046 1.2:+83847039 MS.gene99736:CDS
TTAAACAAACAGATGGTGGT+GGG 0.600043 1.2:+83846396 MS.gene99736:CDS
GACTTGAATTCAAAAGCAGA+AGG 0.600743 1.2:-83846434 None:intergenic
AGAATAAGCGAAATCAAAGC+CGG 0.605755 1.2:-83846249 None:intergenic
AAGTGTGAAGAAGGTTGTTG+AGG 0.610689 1.2:-83846274 None:intergenic
GAATGTGTGTATGGAAGGAT+GGG 0.610715 1.2:+83846745 MS.gene99736:CDS
CAATGTGAGAGGAGAATCGC+CGG 0.620006 1.2:+83846990 MS.gene99736:CDS
GAATTTAAACAAACAGATGG+TGG 0.622742 1.2:+83846392 MS.gene99736:CDS
GGAGCTGTTTGGGCCCACGG+TGG 0.626272 1.2:+83845615 MS.gene99736:CDS
TGTTTGGAATAGCGGTGGAG+TGG 0.630550 1.2:-83845725 None:intergenic
ACCAGATTCTCAGCCTCACG+AGG 0.633510 1.2:-83846365 None:intergenic
GAAGTACCTGTTTGGAATAG+CGG 0.633632 1.2:-83845733 None:intergenic
GTACCTGTTTGGAATAGCGG+TGG 0.638632 1.2:-83845730 None:intergenic
TATGGAAGGATGGGAAGCTA+CGG 0.639377 1.2:+83846754 MS.gene99736:CDS
GGTTAGTGGATTGTGTGCAA+TGG 0.645853 1.2:+83846337 MS.gene99736:CDS
TGAAATCACTGTGGTCTGTG+GGG 0.648087 1.2:+83846954 MS.gene99736:CDS
GGAAGGATGGGAAGCTACGG+TGG 0.648287 1.2:+83846757 MS.gene99736:CDS
GGAAAGCATAGCAATGTGAG+AGG 0.667903 1.2:+83846979 MS.gene99736:CDS
AGGATTGATAGGAAGAACAC+TGG 0.687654 1.2:+83847059 MS.gene99736:CDS
TGCAATGGATAAGCCTCGTG+AGG 0.694549 1.2:+83846352 MS.gene99736:CDS
GATTCCTGCTGAAATCACTG+TGG 0.811897 1.2:+83846945 MS.gene99736:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATGATTCTTTCAAGTTT+TGG + chr1.2:83846557-83846576 MS.gene99736:CDS 20.0%
!!! TTATAAGTTCTAACAGAAAA+CGG - chr1.2:83846644-83846663 None:intergenic 20.0%
! GAATTTACGAATGAGATATT+CGG - chr1.2:83845848-83845867 None:intergenic 25.0%
! TTGATGAAATGGAGAATAAT+GGG + chr1.2:83846510-83846529 MS.gene99736:CDS 25.0%
!! AAGTCTATTTTGTATGGATA+TGG + chr1.2:83846452-83846471 MS.gene99736:CDS 25.0%
!! GAATTCAAGTCTATTTTGTA+TGG + chr1.2:83846446-83846465 MS.gene99736:CDS 25.0%
AAATGAGATGAGGGTAATTT+GGG - chr1.2:83845985-83846004 None:intergenic 30.0%
GAATTTAAACAAACAGATGG+TGG + chr1.2:83846392-83846411 MS.gene99736:CDS 30.0%
GAGATTATGAAATGAGATGA+GGG - chr1.2:83845994-83846013 None:intergenic 30.0%
TAAGAATAAGCGAATCACAA+TGG + chr1.2:83846050-83846069 MS.gene99736:intron 30.0%
TCTTTAAGCAATACTTTGAC+CGG - chr1.2:83847012-83847031 None:intergenic 30.0%
TGTTGTGGATTTGAATGATA+TGG + chr1.2:83846700-83846719 MS.gene99736:CDS 30.0%
TTGTATGGATATGGAAGATT+GGG + chr1.2:83846461-83846480 MS.gene99736:CDS 30.0%
TTTGTATGGATATGGAAGAT+TGG + chr1.2:83846460-83846479 MS.gene99736:CDS 30.0%
! CTTATTTGGTTATGTTGCTT+TGG + chr1.2:83846878-83846897 MS.gene99736:intron 30.0%
! GTTGATGAAATGGAGAATAA+TGG + chr1.2:83846509-83846528 MS.gene99736:CDS 30.0%
AAAAGTCACTCAGGATTGAT+AGG + chr1.2:83847048-83847067 MS.gene99736:CDS 35.0%
AAATGGTTTCTTGGCTTACA+AGG + chr1.2:83846600-83846619 MS.gene99736:CDS 35.0%
AACGATAATGAGGAATGTTG+TGG + chr1.2:83846685-83846704 MS.gene99736:CDS 35.0%
AAGGTAAGGCTGTCAAAATT+TGG + chr1.2:83847096-83847115 MS.gene99736:CDS 35.0%
AATGAGATGAGGGTAATTTG+GGG - chr1.2:83845984-83846003 None:intergenic 35.0%
ACAACATTCCTCATTATCGT+TGG - chr1.2:83846686-83846705 None:intergenic 35.0%
ACGAATGAGATATTCGGTAT+TGG - chr1.2:83845842-83845861 None:intergenic 35.0%
AGAATAAGCGAAATCAAAGC+CGG - chr1.2:83846252-83846271 None:intergenic 35.0%
AGAGTTGTTGAATGTGTGTA+TGG + chr1.2:83846736-83846755 MS.gene99736:CDS 35.0%
AGTATGTGGAAATGGTTTCT+TGG + chr1.2:83846591-83846610 MS.gene99736:CDS 35.0%
AGTCACGACAAATTATGCAT+TGG + chr1.2:83845689-83845708 MS.gene99736:CDS 35.0%
ATGAAGATGAAAAGTCACTC+AGG + chr1.2:83847039-83847058 MS.gene99736:CDS 35.0%
CAACATTCCTCATTATCGTT+GGG - chr1.2:83846685-83846704 None:intergenic 35.0%
CGGGAATTTAAACAAACAGA+TGG + chr1.2:83846389-83846408 MS.gene99736:CDS 35.0%
GAAATGAGATGAGGGTAATT+TGG - chr1.2:83845986-83846005 None:intergenic 35.0%
GACTTGAATTCAAAAGCAGA+AGG - chr1.2:83846437-83846456 None:intergenic 35.0%
GAGAAAAGAGTTAACTTACG+GGG - chr1.2:83845962-83845981 None:intergenic 35.0%
GCTGTCAAAATTTGGTTATG+TGG + chr1.2:83847104-83847123 MS.gene99736:CDS 35.0%
GGAGAAAAGAGTTAACTTAC+GGG - chr1.2:83845963-83845982 None:intergenic 35.0%
GGAGATTATGAAATGAGATG+AGG - chr1.2:83845995-83846014 None:intergenic 35.0%
GGGAGAAAAGAGTTAACTTA+CGG - chr1.2:83845964-83845983 None:intergenic 35.0%
GTCACGACAAATTATGCATT+GGG + chr1.2:83845690-83845709 MS.gene99736:CDS 35.0%
TCTCTTCTATGCAAAACTCT+TGG + chr1.2:83846199-83846218 MS.gene99736:CDS 35.0%
TTGAAGTAGCTCGGAAATTA+AGG - chr1.2:83846151-83846170 None:intergenic 35.0%
TTGTTGAATGTGTGTATGGA+AGG + chr1.2:83846740-83846759 MS.gene99736:CDS 35.0%
! GAACAGAGTTGTTGATGAAA+TGG + chr1.2:83846499-83846518 MS.gene99736:CDS 35.0%
! GGATTCTAAAGAGGTGAAAT+TGG + chr1.2:83846828-83846847 MS.gene99736:intron 35.0%
! GTGTAATGTGATTTTCGATG+AGG + chr1.2:83846796-83846815 MS.gene99736:CDS 35.0%
! TTAAACAAACAGATGGTGGT+GGG + chr1.2:83846396-83846415 MS.gene99736:CDS 35.0%
! TTTAAACAAACAGATGGTGG+TGG + chr1.2:83846395-83846414 MS.gene99736:CDS 35.0%
! TTTAAGACGAAGTACCTGTT+TGG - chr1.2:83845744-83845763 None:intergenic 35.0%
!! AAGAAATGGAAGGGTTAGTT+TGG - chr1.2:83846016-83846035 None:intergenic 35.0%
!! AATTTTGACAGCCTTACCTT+TGG - chr1.2:83847096-83847115 None:intergenic 35.0%
!! ATATTCGGTATTGGTGTTTG+TGG - chr1.2:83845833-83845852 None:intergenic 35.0%
!! TTTGGTTATGTTGCTTTGGT+TGG + chr1.2:83846882-83846901 MS.gene99736:intron 35.0%
!!! TGTTGAGTTTTGAAGTAGCT+CGG - chr1.2:83846160-83846179 None:intergenic 35.0%
!!! TTCAAGTTTTGGAATTCACG+AGG + chr1.2:83846568-83846587 MS.gene99736:CDS 35.0%
AAAAGAGTTAACTTACGGGG+AGG - chr1.2:83845959-83845978 None:intergenic 40.0%
AAGTGTGAAGAAGGTTGTTG+AGG - chr1.2:83846277-83846296 None:intergenic 40.0%
AGCTGCAACAAGAAATGGAA+GGG - chr1.2:83846025-83846044 None:intergenic 40.0%
AGGATTGATAGGAAGAACAC+TGG + chr1.2:83847059-83847078 MS.gene99736:CDS 40.0%
ATTCTTGCCCAACGATAATG+AGG + chr1.2:83846675-83846694 MS.gene99736:CDS 40.0%
CGTTGGGCAAGAATTTGAAA+CGG - chr1.2:83846669-83846688 None:intergenic 40.0%
CTTACAAGGATGAGGAATTC+TGG + chr1.2:83846614-83846633 MS.gene99736:CDS 40.0%
GAATGTGTGTATGGAAGGAT+GGG + chr1.2:83846745-83846764 MS.gene99736:CDS 40.0%
GAGGTGAAATTGGATTTGCA+TGG + chr1.2:83846838-83846857 MS.gene99736:intron 40.0%
GATTTGCATGGATTTCACCT+GGG + chr1.2:83846850-83846869 MS.gene99736:intron 40.0%
GCGTTTGACGTAAATTGAAG+AGG - chr1.2:83846300-83846319 None:intergenic 40.0%
GCTTATGAATCCATGGTTAG+TGG + chr1.2:83846323-83846342 MS.gene99736:CDS 40.0%
GTGGAGTAGGGTGATTAAAT+CGG - chr1.2:83846100-83846119 None:intergenic 40.0%
GTTGCACTCTAACGAAACAA+GGG + chr1.2:83845782-83845801 MS.gene99736:intron 40.0%
TAACCAAATAAGCTGAACCC+AGG - chr1.2:83846870-83846889 None:intergenic 40.0%
TAGCTCGGAAATTAAGGTCT+GGG - chr1.2:83846145-83846164 None:intergenic 40.0%
TGAATGTGTGTATGGAAGGA+TGG + chr1.2:83846744-83846763 MS.gene99736:CDS 40.0%
TGTAGAGCTGCAACAAGAAA+TGG - chr1.2:83846030-83846049 None:intergenic 40.0%
TTTCGTTAGAGTGCAACGAA+TGG - chr1.2:83845779-83845798 None:intergenic 40.0%
TTTCTTGAAGCTGGGAATTG+TGG - chr1.2:83845670-83845689 None:intergenic 40.0%
TTTCTTGGCTTACAAGGATG+AGG + chr1.2:83846606-83846625 MS.gene99736:CDS 40.0%
! ATTAAATCGGCGATGATGGT+TGG - chr1.2:83846087-83846106 None:intergenic 40.0%
! GAAGTACCTGTTTGGAATAG+CGG - chr1.2:83845736-83845755 None:intergenic 40.0%
! GGAAATTAAGGTCTGGGATT+CGG - chr1.2:83846139-83846158 None:intergenic 40.0%
! TGATGGTGTGGATTCTAAAG+AGG + chr1.2:83846819-83846838 MS.gene99736:intron 40.0%
! TGTGATTTTCGATGAGGTGA+TGG + chr1.2:83846802-83846821 MS.gene99736:intron 40.0%
! TTGAAGAGGAAGTGTGAAGA+AGG - chr1.2:83846286-83846305 None:intergenic 40.0%
!! TTGTGGTTGAGAGTTTTGTG+AGG - chr1.2:83845816-83845835 None:intergenic 40.0%
AAGCTGGGAATTGTGGAGTT+GGG - chr1.2:83845663-83845682 None:intergenic 45.0%
ACGCAGAGCTTATGAATCCA+TGG + chr1.2:83846316-83846335 MS.gene99736:CDS 45.0%
AGCGTTTGTGTTTGTGGAGT+AGG - chr1.2:83846113-83846132 None:intergenic 45.0%
AGTGAGAGTGGAGAGTAGTA+CGG - chr1.2:83845890-83845909 None:intergenic 45.0%
AGTGGAGAGTAGTACGGATT+TGG - chr1.2:83845884-83845903 None:intergenic 45.0%
CGTTGCACTCTAACGAAACA+AGG + chr1.2:83845781-83845800 MS.gene99736:intron 45.0%
CTGAAATCACTGTGGTCTGT+GGG + chr1.2:83846953-83846972 MS.gene99736:CDS 45.0%
GAGCTGCAACAAGAAATGGA+AGG - chr1.2:83846026-83846045 None:intergenic 45.0%
GATTCCTGCTGAAATCACTG+TGG + chr1.2:83846945-83846964 MS.gene99736:CDS 45.0%
GCGAATCACAATGGTACACA+TGG + chr1.2:83846059-83846078 MS.gene99736:intron 45.0%
GCGTTTGTGTTTGTGGAGTA+GGG - chr1.2:83846112-83846131 None:intergenic 45.0%
GGATTTGCATGGATTTCACC+TGG + chr1.2:83846849-83846868 MS.gene99736:intron 45.0%
GGTGATTAAATCGGCGATGA+TGG - chr1.2:83846091-83846110 None:intergenic 45.0%
GTAGCTCGGAAATTAAGGTC+TGG - chr1.2:83846146-83846165 None:intergenic 45.0%
GTCGTGACTTTCTTGAAGCT+GGG - chr1.2:83845678-83845697 None:intergenic 45.0%
GTGGAGAGTAGTACGGATTT+GGG - chr1.2:83845883-83845902 None:intergenic 45.0%
TATGGAAGGATGGGAAGCTA+CGG + chr1.2:83846754-83846773 MS.gene99736:CDS 45.0%
TCACCTGGGTTCAGCTTATT+TGG + chr1.2:83846864-83846883 MS.gene99736:intron 45.0%
TGAAATCACTGTGGTCTGTG+GGG + chr1.2:83846954-83846973 MS.gene99736:CDS 45.0%
TGCACACAATCCACTAACCA+TGG - chr1.2:83846336-83846355 None:intergenic 45.0%
TGTCGTGACTTTCTTGAAGC+TGG - chr1.2:83845679-83845698 None:intergenic 45.0%
! CTGCTTTGTTGCCAAAGGTA+AGG + chr1.2:83847082-83847101 MS.gene99736:CDS 45.0%
! GGAAAGCATAGCAATGTGAG+AGG + chr1.2:83846979-83846998 MS.gene99736:CDS 45.0%
! TCACGAGGAGTATGTGGAAA+TGG + chr1.2:83846583-83846602 MS.gene99736:CDS 45.0%
! TGGAATTCACGAGGAGTATG+TGG + chr1.2:83846577-83846596 MS.gene99736:CDS 45.0%
!! GGTTAGTGGATTGTGTGCAA+TGG + chr1.2:83846337-83846356 MS.gene99736:CDS 45.0%
!! GGTTATGTTGCTTTGGTTGG+AGG + chr1.2:83846885-83846904 MS.gene99736:intron 45.0%
!! TTTTCGATGAGGTGATGGTG+TGG + chr1.2:83846807-83846826 MS.gene99736:intron 45.0%
ACTCCACCGCTATTCCAAAC+AGG + chr1.2:83845727-83845746 MS.gene99736:CDS 50.0%
AGCTGGGAATTGTGGAGTTG+GGG - chr1.2:83845662-83845681 None:intergenic 50.0%
ATGGGAAGCTACGGTGGTTA+AGG + chr1.2:83846763-83846782 MS.gene99736:CDS 50.0%
CAATGTGAGAGGAGAATCGC+CGG + chr1.2:83846990-83847009 MS.gene99736:CDS 50.0%
CAGACCACAGTGATTTCAGC+AGG - chr1.2:83846952-83846971 None:intergenic 50.0%
CGGTGTAGCGTTTGTGTTTG+TGG - chr1.2:83846119-83846138 None:intergenic 50.0%
CTCAACTCCAAACCCAGCTT+CGG + chr1.2:83845594-83845613 MS.gene99736:CDS 50.0%
GAAGCTGGGAATTGTGGAGT+TGG - chr1.2:83845664-83845683 None:intergenic 50.0%
GAGTAGTACGGATTTGGGTG+AGG - chr1.2:83845878-83845897 None:intergenic 50.0%
GCTGAAATCACTGTGGTCTG+TGG + chr1.2:83846952-83846971 MS.gene99736:CDS 50.0%
GTGAGGCTGAGAATCTGGTT+CGG + chr1.2:83846369-83846388 MS.gene99736:CDS 50.0%
TCCAAACGCGCTTCTCAAAC+CGG + chr1.2:83846230-83846249 MS.gene99736:CDS 50.0%
TGCAATGGATAAGCCTCGTG+AGG + chr1.2:83846352-83846371 MS.gene99736:CDS 50.0%
TTGTGGAGTTGGGGAAAACG+TGG - chr1.2:83845653-83845672 None:intergenic 50.0%
! ACTGGCTGCTTTGTTGCCAA+AGG + chr1.2:83847077-83847096 MS.gene99736:CDS 50.0%
! GTACCTGTTTGGAATAGCGG+TGG - chr1.2:83845733-83845752 None:intergenic 50.0%
! TGAGGCTGAGAATCTGGTTC+GGG + chr1.2:83846370-83846389 MS.gene99736:CDS 50.0%
! TGTTTGGAATAGCGGTGGAG+TGG - chr1.2:83845728-83845747 None:intergenic 50.0%
AACAGCTCCGAAGCTGGGTT+TGG - chr1.2:83845604-83845623 None:intergenic 55.0%
AACCCAGCTTCGGAGCTGTT+TGG + chr1.2:83845604-83845623 MS.gene99736:CDS 55.0%
ACCAGATTCTCAGCCTCACG+AGG - chr1.2:83846368-83846387 None:intergenic 55.0%
ACCCAGCTTCGGAGCTGTTT+GGG + chr1.2:83845605-83845624 MS.gene99736:CDS 55.0%
AGAGAGGAGGTGAGTGAGAG+TGG - chr1.2:83845902-83845921 None:intergenic 55.0%
ATCACTGTGGTCTGTGGGGT+TGG + chr1.2:83846958-83846977 MS.gene99736:CDS 55.0%
GGTTGGAGGAGATGCAGAAG+AGG + chr1.2:83846899-83846918 MS.gene99736:intron 55.0%
! AGAAGAGAGGTGGTGGTGAG+TGG - chr1.2:83845932-83845951 None:intergenic 55.0%
! AGCTGGGTTTGGAGTTGAGG+AGG - chr1.2:83845593-83845612 None:intergenic 55.0%
! CGAAGCTGGGTTTGGAGTTG+AGG - chr1.2:83845596-83845615 None:intergenic 55.0%
! GTTTTGCTCTCTCCCACCGT+GGG - chr1.2:83845631-83845650 None:intergenic 55.0%
! TGGGTTTGGAGTTGAGGAGG+AGG - chr1.2:83845590-83845609 None:intergenic 55.0%
AGGCGAGAGAAGAGAGGTGG+TGG - chr1.2:83845939-83845958 None:intergenic 60.0%
GCCCAAACAGCTCCGAAGCT+GGG - chr1.2:83845609-83845628 None:intergenic 60.0%
GCCTCGTGAGGCTGAGAATC+TGG + chr1.2:83846364-83846383 MS.gene99736:CDS 60.0%
GGAAGGATGGGAAGCTACGG+TGG + chr1.2:83846757-83846776 MS.gene99736:CDS 60.0%
TTCGGAGCTGTTTGGGCCCA+CGG + chr1.2:83845612-83845631 MS.gene99736:CDS 60.0%
! AGAGAGGTGGTGGTGAGTGG+TGG - chr1.2:83845929-83845948 None:intergenic 60.0%
! AGGTGGTGGTGAGTGGTGGT+GGG - chr1.2:83845925-83845944 None:intergenic 60.0%
! GGTTTTGCTCTCTCCCACCG+TGG - chr1.2:83845632-83845651 None:intergenic 60.0%
!! GCCGGTTTGAGAAGCGCGTT+TGG - chr1.2:83846234-83846253 None:intergenic 60.0%
ACGGGGAGGCGAGAGAAGAG+AGG - chr1.2:83845945-83845964 None:intergenic 65.0%
GAGCTGTTTGGGCCCACGGT+GGG + chr1.2:83845616-83845635 MS.gene99736:CDS 65.0%
GGCCCAAACAGCTCCGAAGC+TGG - chr1.2:83845610-83845629 None:intergenic 65.0%
GGGAGGCGAGAGAAGAGAGG+TGG - chr1.2:83845942-83845961 None:intergenic 65.0%
! GAGGTGGTGGTGAGTGGTGG+TGG - chr1.2:83845926-83845945 None:intergenic 65.0%
!! GAGTGGTGGTGGGAGAGAGG+AGG - chr1.2:83845915-83845934 None:intergenic 65.0%
!! GGTGAGTGGTGGTGGGAGAG+AGG - chr1.2:83845918-83845937 None:intergenic 65.0%
GGAGCTGTTTGGGCCCACGG+TGG + chr1.2:83845615-83845634 MS.gene99736:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 83845577 83847131 83845577 ID=MS.gene99736
chr1.2 mRNA 83845577 83847131 83845577 ID=MS.gene99736.t1;Parent=MS.gene99736
chr1.2 exon 83845577 83845748 83845577 ID=MS.gene99736.t1.exon1;Parent=MS.gene99736.t1
chr1.2 CDS 83845577 83845748 83845577 ID=cds.MS.gene99736.t1;Parent=MS.gene99736.t1
chr1.2 exon 83846147 83846817 83846147 ID=MS.gene99736.t1.exon2;Parent=MS.gene99736.t1
chr1.2 CDS 83846147 83846817 83846147 ID=cds.MS.gene99736.t1;Parent=MS.gene99736.t1
chr1.2 exon 83846907 83847131 83846907 ID=MS.gene99736.t1.exon3;Parent=MS.gene99736.t1
chr1.2 CDS 83846907 83847131 83846907 ID=cds.MS.gene99736.t1;Parent=MS.gene99736.t1
Gene Sequence

>MS.gene99736

ATGTCTTCTTCCTCCTCCTCAACTCCAAACCCAGCTTCGGAGCTGTTTGGGCCCACGGTGGGAGAGAGCAAAACCACGTTTTCCCCAACTCCACAATTCCCAGCTTCAAGAAAGTCACGACAAATTATGCATTGGGAAGCGAAAAATGCCACTCCACCGCTATTCCAAACAGGTACTTCGTCTTAAAAAAACAGTAACACCATTCGTTGCACTCTAACGAAACAAGGGCAACGATTCCTCACAAAACTCTCAACCACAAACACCAATACCGAATATCTCATTCGTAAATTCGTACAATCCTCACCCAAATCCGTACTACTCTCCACTCTCACTCACCTCCTCTCTCCCACCACCACTCACCACCACCTCTCTTCTCTCGCCTCCCCGTAAGTTAACTCTTTTCTCCCCAAATTACCCTCATCTCATTTCATAATCTCCAAACTAACCCTTCCATTTCTTGTTGCAGCTCTACATAAGAATAAGCGAATCACAATGGTACACATGGAACCAACCATCATCGCCGATTTAATCACCCTACTCCACAAACACAAACGCTACACCGAATCCCAGACCTTAATTTCCGAGCTACTTCAAAACTCAACAACAAAGAACGTGACATTGTTCTCTTCTATGCAAAACTCTTGGACTCACATTCCAAACGCGCTTCTCAAACCGGCTTTGATTTCGCTTATTCTCACCTCAACAACCTTCTTCACACTTCCTCTTCAATTTACGTCAAACGCAGAGCTTATGAATCCATGGTTAGTGGATTGTGTGCAATGGATAAGCCTCGTGAGGCTGAGAATCTGGTTCGGGAATTTAAACAAACAGATGGTGGTGGGAAGATTCAGCTTCAACCTTCTGCTTTTGAATTCAAGTCTATTTTGTATGGATATGGAAGATTGGGTTTGTTTCATGATTTGAACAGAGTTGTTGATGAAATGGAGAATAATGGGTTTGTTATTGATACTGTTTGTTATAATATGATTCTTTCAAGTTTTGGAATTCACGAGGAGTATGTGGAAATGGTTTCTTGGCTTACAAGGATGAGGAATTCTGGTGTTCCGTTTTCTGTTAGAACTTATAATTCCGTTTCAAATTCTTGCCCAACGATAATGAGGAATGTTGTGGATTTGAATGATATGGCATTGTCGATTGAAGAGTTGTTGAATGTGTGTATGGAAGGATGGGAAGCTACGGTGGTTAAGGAGTTGCTATCGTGTAATGTGATTTTCGATGAGGTGATGGTGTGGATTCTAAAGAGGTGAAATTGGATTTGCATGGATTTCACCTGGGTTCAGCTTATTTGGTTATGTTGCTTTGGTTGGAGGAGATGCAGAAGAGGTTGTTAAATGCTTCAAATCATGAGATTCCTGCTGAAATCACTGTGGTCTGTGGGGTTGGAAAGCATAGCAATGTGAGAGGAGAATCGCCGGTCAAAGTATTGCTTAAAGAGATGATGATGAAGATGAAAAGTCACTCAGGATTGATAGGAAGAACACTGGCTGCTTTGTTGCCAAAGGTAAGGCTGTCAAAATTTGGTTATGTGGATTGA
Protein sequence

>MS.gene99736.t1

MSSSSSSTPNPASELFGPTVGESKTTFSPTPQFPASRKSRQIMHWEAKNATPPLFQTDLNFRATSKLNNKERDIVLFYAKLLDSHSKRASQTGFDFAYSHLNNLLHTSSSIYVKRRAYESMVSGLCAMDKPREAENLVREFKQTDGGGKIQLQPSAFEFKSILYGYGRLGLFHDLNRVVDEMENNGFVIDTVCYNMILSSFGIHEEYVEMVSWLTRMRNSGVPFSVRTYNSVSNSCPTIMRNVVDLNDMALSIEELLNVCMEGWEATVVKELLSCNVIFDEEMQKRLLNASNHEIPAEITVVCGVGKHSNVRGESPVKVLLKEMMMKMKSHSGLIGRTLAALLPKVRLSKFGYVD