Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99897.t1 | XP_013460797.1 | 97.1 | 238 | 7 | 0 | 1 | 238 | 1 | 238 | 8.40E-135 | 489.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99897.t1 | Q94AK4 | 30.5 | 236 | 107 | 8 | 20 | 238 | 8 | 203 | 1.5e-18 | 94.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99897.t1 | A0A072UZH7 | 97.1 | 238 | 7 | 0 | 1 | 238 | 1 | 238 | 6.1e-135 | 489.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene99897 | MS.gene93783 | PPI |
| MS.gene040151 | MS.gene99897 | PPI |
| MS.gene99897 | MS.gene62620 | PPI |
| MS.gene99897 | MS.gene95889 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99897.t1 | MTR_3g072630 | 97.059 | 238 | 7 | 0 | 1 | 238 | 1 | 238 | 6.55e-169 | 469 |
| MS.gene99897.t1 | MTR_3g072630 | 97.059 | 238 | 7 | 0 | 1 | 238 | 1 | 238 | 1.40e-168 | 468 |
| MS.gene99897.t1 | MTR_5g088720 | 29.694 | 229 | 133 | 5 | 20 | 238 | 12 | 222 | 2.80e-24 | 99.0 |
| MS.gene99897.t1 | MTR_5g088720 | 29.694 | 229 | 133 | 5 | 20 | 238 | 7 | 217 | 3.04e-24 | 99.0 |
| MS.gene99897.t1 | MTR_5g088720 | 29.694 | 229 | 133 | 5 | 20 | 238 | 53 | 263 | 5.54e-24 | 99.0 |
| MS.gene99897.t1 | MTR_1g051105 | 51.429 | 70 | 34 | 0 | 169 | 238 | 107 | 176 | 1.82e-20 | 87.4 |
| MS.gene99897.t1 | MTR_2g007340 | 30.522 | 249 | 131 | 9 | 1 | 238 | 1 | 218 | 2.50e-18 | 82.4 |
| MS.gene99897.t1 | MTR_0067s0100 | 26.549 | 226 | 133 | 6 | 20 | 238 | 8 | 207 | 7.93e-17 | 77.8 |
| MS.gene99897.t1 | MTR_3g083480 | 28.195 | 266 | 124 | 11 | 20 | 238 | 9 | 254 | 7.43e-15 | 73.2 |
| MS.gene99897.t1 | MTR_6g079660 | 36.047 | 86 | 47 | 3 | 156 | 238 | 172 | 252 | 3.32e-12 | 65.5 |
| MS.gene99897.t1 | MTR_2g097620 | 23.661 | 224 | 135 | 4 | 20 | 238 | 14 | 206 | 1.10e-11 | 63.9 |
| MS.gene99897.t1 | MTR_3g068005 | 25.000 | 228 | 141 | 7 | 20 | 238 | 7 | 213 | 2.55e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99897.t1 | AT1G60360 | 41.129 | 248 | 129 | 9 | 1 | 238 | 1 | 241 | 9.62e-40 | 140 |
| MS.gene99897.t1 | AT3G56580 | 30.508 | 236 | 107 | 8 | 20 | 238 | 8 | 203 | 1.01e-24 | 100 |
| MS.gene99897.t1 | AT3G56580 | 30.508 | 236 | 107 | 8 | 20 | 238 | 8 | 203 | 1.01e-24 | 100 |
| MS.gene99897.t1 | AT3G56580 | 30.508 | 236 | 107 | 8 | 20 | 238 | 8 | 203 | 1.01e-24 | 100 |
| MS.gene99897.t1 | AT2G40830 | 30.088 | 226 | 125 | 10 | 20 | 238 | 8 | 207 | 4.96e-21 | 90.1 |
| MS.gene99897.t1 | AT2G40830 | 30.088 | 226 | 125 | 10 | 20 | 238 | 8 | 207 | 4.96e-21 | 90.1 |
| MS.gene99897.t1 | AT2G40830 | 30.088 | 226 | 125 | 10 | 20 | 238 | 8 | 207 | 4.96e-21 | 90.1 |
| MS.gene99897.t1 | AT2G40830 | 30.088 | 226 | 125 | 10 | 20 | 238 | 8 | 207 | 4.96e-21 | 90.1 |
| MS.gene99897.t1 | AT3G19950 | 30.603 | 232 | 133 | 9 | 18 | 238 | 19 | 233 | 7.98e-21 | 89.7 |
| MS.gene99897.t1 | AT3G19950 | 30.603 | 232 | 133 | 9 | 18 | 238 | 77 | 291 | 1.21e-20 | 89.7 |
| MS.gene99897.t1 | AT3G19950 | 30.603 | 232 | 133 | 9 | 18 | 238 | 77 | 291 | 1.21e-20 | 89.7 |
| MS.gene99897.t1 | AT3G10815 | 44.262 | 61 | 33 | 1 | 179 | 238 | 78 | 138 | 6.56e-11 | 60.5 |
Find 79 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGCGTCGGGTTTGGGTTTC+TGG | -0.036611 | 3.2:+65417161 | None:intergenic |
| CATGACGTGGGCGTCGGGTT+TGG | 0.229750 | 3.2:+65417153 | None:intergenic |
| GCTTCTAGTAAACGCGCTTC+TGG | 0.237677 | 3.2:+65417224 | None:intergenic |
| ATGACGTGGGCGTCGGGTTT+GGG | 0.249529 | 3.2:+65417154 | None:intergenic |
| ATTGCGTTTATACCTCTTTC+CGG | 0.279704 | 3.2:+65416840 | None:intergenic |
| GTTCAGGTTCAGTTTGTGTT+TGG | 0.298514 | 3.2:+65417081 | None:intergenic |
| TGTCAAGAAGAGTTTGAAAT+TGG | 0.316838 | 3.2:-65416762 | MS.gene99897:CDS |
| CGGTGTTGGATCCCGGGTTC+AGG | 0.338023 | 3.2:+65417065 | None:intergenic |
| GCATCAACGCCGCGTGGAAT+TGG | 0.345689 | 3.2:+65416945 | None:intergenic |
| TGTTTATTTCACATATGAAT+TGG | 0.346384 | 3.2:+65417294 | None:intergenic |
| TTCAGGTTCAGTTTGTGTTT+GGG | 0.363394 | 3.2:+65417082 | None:intergenic |
| AAACGTGTTTGAATCGGAAT+TGG | 0.369421 | 3.2:+65417001 | None:intergenic |
| GGCGTCGGGTTTGGGTTTCT+GGG | 0.372254 | 3.2:+65417162 | None:intergenic |
| TCAAACTCTTCTTGACAAAC+AGG | 0.384860 | 3.2:+65416768 | None:intergenic |
| CTTCTAGTAAACGCGCTTCT+GGG | 0.389670 | 3.2:+65417225 | None:intergenic |
| TGGTTGTTTATTCTCTCTCT+TGG | 0.415418 | 3.2:+65417416 | None:intergenic |
| CCTCTTTCCGGCACCGGTGG+TGG | 0.418881 | 3.2:+65416852 | None:intergenic |
| CGATTCAAACACGTTTCAAC+CGG | 0.424278 | 3.2:-65416994 | MS.gene99897:CDS |
| GGGTTAAAGCGACGGATGGG+TGG | 0.432478 | 3.2:+65417182 | None:intergenic |
| GTTCAGTTTGTGTTTGGGTT+GGG | 0.434037 | 3.2:+65417087 | None:intergenic |
| ATCAAGTCAGAGGAGTTATA+TGG | 0.436014 | 3.2:+65417335 | None:intergenic |
| TGCAGACGGTGCGGTTGCAT+TGG | 0.439465 | 3.2:+65417363 | None:intergenic |
| TTGTTTATTCTCTCTCTTGG+AGG | 0.443470 | 3.2:+65417419 | None:intergenic |
| TCCAACACCGTCCACGTACA+TGG | 0.446385 | 3.2:-65417052 | MS.gene99897:CDS |
| GGTTCAGTTTGTGTTTGGGT+TGG | 0.447683 | 3.2:+65417086 | None:intergenic |
| TTCTGGGTTAAAGCGACGGA+TGG | 0.449024 | 3.2:+65417178 | None:intergenic |
| CAAGAAGAGTTTGAAATTGG+TGG | 0.457438 | 3.2:-65416759 | MS.gene99897:CDS |
| ACGTGGACGGTGTTGGATCC+CGG | 0.457633 | 3.2:+65417058 | None:intergenic |
| CGTGGACGGTGTTGGATCCC+GGG | 0.458200 | 3.2:+65417059 | None:intergenic |
| TTTATACCTCTTTCCGGCAC+CGG | 0.460655 | 3.2:+65416846 | None:intergenic |
| TATGAATTGGCCAAAGCAGC+GGG | 0.463741 | 3.2:+65417307 | None:intergenic |
| GTTCCAGTGCGCCGTCGGAC+AGG | 0.464229 | 3.2:-65417119 | MS.gene99897:CDS |
| TTGAAATTGGTGGTGAAGCG+AGG | 0.464387 | 3.2:-65416749 | MS.gene99897:CDS |
| TCTCCTGTCCGACGGCGCAC+TGG | 0.471289 | 3.2:+65417116 | None:intergenic |
| TGTGGCATGACGTGGGCGTC+GGG | 0.472184 | 3.2:+65417148 | None:intergenic |
| GCAGGGTCCACCACCGGTGC+CGG | 0.475669 | 3.2:-65416859 | MS.gene99897:CDS |
| GTGTGGCATGACGTGGGCGT+CGG | 0.475763 | 3.2:+65417147 | None:intergenic |
| CCACCACCGGTGCCGGAAAG+AGG | 0.484120 | 3.2:-65416852 | MS.gene99897:CDS |
| CGGTTGAAACGTGTTTGAAT+CGG | 0.491561 | 3.2:+65416995 | None:intergenic |
| ACACAAACTGAACCTGAACC+CGG | 0.494798 | 3.2:-65417077 | MS.gene99897:CDS |
| GCACCGGTGGTGGACCCTGC+CGG | 0.504051 | 3.2:+65416862 | None:intergenic |
| GTGAAGTCTACGACGAGTCT+TGG | 0.504527 | 3.2:+65417263 | None:intergenic |
| ACCAAATAACAGAAAATGAC+CGG | 0.519700 | 3.2:-65416881 | MS.gene99897:CDS |
| ATTGGTCCTTGTCGTCCACC+TGG | 0.519875 | 3.2:+65416963 | None:intergenic |
| TCTACGACGAGTCTTGGTCT+TGG | 0.525811 | 3.2:+65417269 | None:intergenic |
| TTTGAATCGGAATTGGAAGA+AGG | 0.528606 | 3.2:+65417008 | None:intergenic |
| AGTAAACGCGCTTCTGGGGA+AGG | 0.533512 | 3.2:+65417230 | None:intergenic |
| TCTGGGTTAAAGCGACGGAT+GGG | 0.546330 | 3.2:+65417179 | None:intergenic |
| AATAACAGAAAATGACCGGC+AGG | 0.549894 | 3.2:-65416877 | MS.gene99897:CDS |
| GATGGGTGGGTCAAGCATGA+TGG | 0.552583 | 3.2:+65417196 | None:intergenic |
| GGGTTTCTGGGTTAAAGCGA+CGG | 0.560254 | 3.2:+65417174 | None:intergenic |
| GGTTAAAGCGACGGATGGGT+GGG | 0.561633 | 3.2:+65417183 | None:intergenic |
| TGAAATTGGTGGTGAAGCGA+GGG | 0.569510 | 3.2:-65416748 | MS.gene99897:CDS |
| TGACCGGCAGGGTCCACCAC+CGG | 0.573125 | 3.2:-65416865 | MS.gene99897:CDS |
| ACTTCTTGTGTGGCATGACG+TGG | 0.573297 | 3.2:+65417140 | None:intergenic |
| GCGCACTGGAACTTCTTGTG+TGG | 0.576661 | 3.2:+65417130 | None:intergenic |
| ATACCTCTTTCCGGCACCGG+TGG | 0.585012 | 3.2:+65416849 | None:intergenic |
| AAGAAGTTCCAGTGCGCCGT+CGG | 0.587134 | 3.2:-65417124 | MS.gene99897:CDS |
| TTCTAGTAAACGCGCTTCTG+GGG | 0.588626 | 3.2:+65417226 | None:intergenic |
| AGAGTTGAAAGTTTCTACGT+TGG | 0.598580 | 3.2:+65417396 | None:intergenic |
| CCCATGTACGTGGACGGTGT+TGG | 0.598601 | 3.2:+65417051 | None:intergenic |
| GGTGATGATCTCCTGTCCGA+CGG | 0.599729 | 3.2:+65417108 | None:intergenic |
| GAATTGGAAGAAGGATCCAC+AGG | 0.610104 | 3.2:+65417017 | None:intergenic |
| TCTATTAGTTCGTTAAAACC+CGG | 0.613916 | 3.2:+65416903 | None:intergenic |
| CACAAACTGAACCTGAACCC+GGG | 0.615987 | 3.2:-65417076 | MS.gene99897:CDS |
| ATATGAATTGGCCAAAGCAG+CGG | 0.622222 | 3.2:+65417306 | None:intergenic |
| GTTATATGGTGCAATGCAGA+CGG | 0.623975 | 3.2:+65417349 | None:intergenic |
| ATGGGTCATTCTACAACCTG+TGG | 0.633466 | 3.2:-65417033 | MS.gene99897:CDS |
| TGAATTGGCCAAAGCAGCGG+GGG | 0.634695 | 3.2:+65417309 | None:intergenic |
| TCTCTTGCATCAACGCCGCG+TGG | 0.635767 | 3.2:+65416939 | None:intergenic |
| TTCTGGGGAAGGATCATGTG+CGG | 0.637567 | 3.2:+65417241 | None:intergenic |
| CCAACACCGTCCACGTACAT+GGG | 0.643084 | 3.2:-65417051 | MS.gene99897:CDS |
| TGTAGAATGACCCATGTACG+TGG | 0.664295 | 3.2:+65417041 | None:intergenic |
| CTTCTTGTGTGGCATGACGT+GGG | 0.672360 | 3.2:+65417141 | None:intergenic |
| ATAACAGAAAATGACCGGCA+GGG | 0.686987 | 3.2:-65416876 | MS.gene99897:CDS |
| ATGAATTGGCCAAAGCAGCG+GGG | 0.696463 | 3.2:+65417308 | None:intergenic |
| GAATGACCCATGTACGTGGA+CGG | 0.707803 | 3.2:+65417045 | None:intergenic |
| ATGGTGCAATGCAGACGGTG+CGG | 0.727040 | 3.2:+65417354 | None:intergenic |
| CGACAAGGACCAATTCCACG+CGG | 0.788216 | 3.2:-65416954 | MS.gene99897:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATACTAAGATTGAAATT+TGG | - | chr3.2:65417210-65417229 | MS.gene99897:CDS | 15.0% |
| !! | ACTTAAAATATGTACAAGTA+GGG | - | chr3.2:65416989-65417008 | MS.gene99897:CDS | 20.0% |
| !! | ATCTAACCATTCAATTTATT+GGG | - | chr3.2:65416959-65416978 | MS.gene99897:CDS | 20.0% |
| !! | GCAATCAATTAATTTAACTA+CGG | + | chr3.2:65417418-65417437 | None:intergenic | 20.0% |
| !! | TATCTAACCATTCAATTTAT+TGG | - | chr3.2:65416958-65416977 | MS.gene99897:CDS | 20.0% |
| !! | TGTTTATTTCACATATGAAT+TGG | + | chr3.2:65416023-65416042 | None:intergenic | 20.0% |
| ! | GACTTAAAATATGTACAAGT+AGG | - | chr3.2:65416988-65417007 | MS.gene99897:CDS | 25.0% |
| ! | GAGTGATATATATGTTTACA+TGG | + | chr3.2:65416597-65416616 | None:intergenic | 25.0% |
| ! | TCATGATAATTCATGTTCAT+CGG | - | chr3.2:65416887-65416906 | MS.gene99897:CDS | 25.0% |
| !! | ATTTTAGATTCAAACATGAG+AGG | - | chr3.2:65417052-65417071 | MS.gene99897:CDS | 25.0% |
| ACATGAATTATCATGAAGCA+TGG | + | chr3.2:65416883-65416902 | None:intergenic | 30.0% | |
| ACCAAATAACAGAAAATGAC+CGG | - | chr3.2:65416433-65416452 | MS.gene99897:intron | 30.0% | |
| ATGTTTGAATCCTACATAAG+GGG | - | chr3.2:65416924-65416943 | MS.gene99897:CDS | 30.0% | |
| CAATCTTGATTCAACAAACA+CGG | - | chr3.2:65417239-65417258 | MS.gene99897:CDS | 30.0% | |
| CATGTTTGAATCCTACATAA+GGG | - | chr3.2:65416923-65416942 | MS.gene99897:CDS | 30.0% | |
| GAATGTACCTTATGGTATAT+CGG | + | chr3.2:65417086-65417105 | None:intergenic | 30.0% | |
| GTAGAACCCAATAAATTGAA+TGG | + | chr3.2:65416968-65416987 | None:intergenic | 30.0% | |
| TAATTCATGTTCATCGGATT+TGG | - | chr3.2:65416893-65416912 | MS.gene99897:CDS | 30.0% | |
| TATACCATAAGGTACATTCT+CGG | - | chr3.2:65417087-65417106 | MS.gene99897:CDS | 30.0% | |
| TCATGTTTGAATCCTACATA+AGG | - | chr3.2:65416922-65416941 | MS.gene99897:CDS | 30.0% | |
| TCTAAATCCGATATACCATA+AGG | - | chr3.2:65417076-65417095 | MS.gene99897:CDS | 30.0% | |
| TCTATTAGTTCGTTAAAACC+CGG | + | chr3.2:65416414-65416433 | None:intergenic | 30.0% | |
| TTACATACGTTTCTTCCTTA+TGG | - | chr3.2:65417326-65417345 | MS.gene99897:CDS | 30.0% | |
| TTTGTTGAATCAAGATTGGA+AGG | + | chr3.2:65417237-65417256 | None:intergenic | 30.0% | |
| ! | TGTCAAGAAGAGTTTGAAAT+TGG | - | chr3.2:65416552-65416571 | MS.gene99897:intron | 30.0% |
| !!! | AAGAGACTATTTTTTTGGAC+CGG | - | chr3.2:65416392-65416411 | MS.gene99897:intron | 30.0% |
| !!! | GATGCAAGAGACTATTTTTT+TGG | - | chr3.2:65416387-65416406 | MS.gene99897:intron | 30.0% |
| AAACGTGTTTGAATCGGAAT+TGG | + | chr3.2:65416316-65416335 | None:intergenic | 35.0% | |
| ACTCTGATTGTATTGTTCCA+TGG | - | chr3.2:65416613-65416632 | MS.gene99897:intron | 35.0% | |
| AGAGTTGAAAGTTTCTACGT+TGG | + | chr3.2:65415921-65415940 | None:intergenic | 35.0% | |
| ATCAAGTCAGAGGAGTTATA+TGG | + | chr3.2:65415982-65416001 | None:intergenic | 35.0% | |
| ATGTAGGATTCAAACATGAG+AGG | + | chr3.2:65416921-65416940 | None:intergenic | 35.0% | |
| ATTGCGTTTATACCTCTTTC+CGG | + | chr3.2:65416477-65416496 | None:intergenic | 35.0% | |
| TCAAACTCTTCTTGACAAAC+AGG | + | chr3.2:65416549-65416568 | None:intergenic | 35.0% | |
| TCAATATAACCCCCTTATGT+AGG | + | chr3.2:65416937-65416956 | None:intergenic | 35.0% | |
| TCATCATCAGAAGAAGAACA+AGG | + | chr3.2:65416681-65416700 | None:intergenic | 35.0% | |
| TGGTTGTTTATTCTCTCTCT+TGG | + | chr3.2:65415901-65415920 | None:intergenic | 35.0% | |
| TGTTTGAATCCTACATAAGG+GGG | - | chr3.2:65416925-65416944 | MS.gene99897:CDS | 35.0% | |
| TTGTTTATTCTCTCTCTTGG+AGG | + | chr3.2:65415898-65415917 | None:intergenic | 35.0% | |
| TTTGAATCGGAATTGGAAGA+AGG | + | chr3.2:65416309-65416328 | None:intergenic | 35.0% | |
| ! | CAAGAAGAGTTTGAAATTGG+TGG | - | chr3.2:65416555-65416574 | MS.gene99897:intron | 35.0% |
| ! | CGTGTTTGTTGAATCAAGAT+TGG | + | chr3.2:65417241-65417260 | None:intergenic | 35.0% |
| ! | TCTGATGATGAAAATGAGTG+TGG | - | chr3.2:65416690-65416709 | MS.gene99897:intron | 35.0% |
| ! | TGCGCATTCACTCATTATTT+TGG | - | chr3.2:65417125-65417144 | MS.gene99897:CDS | 35.0% |
| ! | TGGTTCTGCTTCAAGAATAA+GGG | - | chr3.2:65416830-65416849 | MS.gene99897:CDS | 35.0% |
| ! | TTCAGGTTCAGTTTGTGTTT+GGG | + | chr3.2:65416235-65416254 | None:intergenic | 35.0% |
| ! | TTGCTTTCGATTTTCACTGT+TGG | + | chr3.2:65416501-65416520 | None:intergenic | 35.0% |
| !!! | AGAGACTATTTTTTTGGACC+GGG | - | chr3.2:65416393-65416412 | MS.gene99897:intron | 35.0% |
| !!! | TCATTATTTTGGCATATCCG+TGG | - | chr3.2:65417136-65417155 | MS.gene99897:CDS | 35.0% |
| AATAACAGAAAATGACCGGC+AGG | - | chr3.2:65416437-65416456 | MS.gene99897:intron | 40.0% | |
| ATAACAGAAAATGACCGGCA+GGG | - | chr3.2:65416438-65416457 | MS.gene99897:intron | 40.0% | |
| ATATGAATTGGCCAAAGCAG+CGG | + | chr3.2:65416011-65416030 | None:intergenic | 40.0% | |
| ATTGCCGAGAATGTACCTTA+TGG | + | chr3.2:65417094-65417113 | None:intergenic | 40.0% | |
| CGATTCAAACACGTTTCAAC+CGG | - | chr3.2:65416320-65416339 | MS.gene99897:intron | 40.0% | |
| CGGTTGAAACGTGTTTGAAT+CGG | + | chr3.2:65416322-65416341 | None:intergenic | 40.0% | |
| GAATTGTGAAGTCTAAGCCA+TGG | + | chr3.2:65416633-65416652 | None:intergenic | 40.0% | |
| GGAATCTCTTGACGACAAAT+TGG | + | chr3.2:65416660-65416679 | None:intergenic | 40.0% | |
| GGACAAGAATTTCGTCTCTT+TGG | - | chr3.2:65416757-65416776 | MS.gene99897:CDS | 40.0% | |
| GGTTCTGCTTCAAGAATAAG+GGG | - | chr3.2:65416831-65416850 | MS.gene99897:CDS | 40.0% | |
| GTTATATGGTGCAATGCAGA+CGG | + | chr3.2:65415968-65415987 | None:intergenic | 40.0% | |
| GTTCATCCTCAAAGAGACAA+TGG | - | chr3.2:65416804-65416823 | MS.gene99897:CDS | 40.0% | |
| TACGTTTCTTCCTTATGGTG+TGG | - | chr3.2:65417331-65417350 | MS.gene99897:CDS | 40.0% | |
| ! | GAAAATGAGTGTGGTGATGA+AGG | - | chr3.2:65416699-65416718 | MS.gene99897:intron | 40.0% |
| ! | GTTCAGGTTCAGTTTGTGTT+TGG | + | chr3.2:65416236-65416255 | None:intergenic | 40.0% |
| ! | GTTCAGTTTGTGTTTGGGTT+GGG | + | chr3.2:65416230-65416249 | None:intergenic | 40.0% |
| ! | TTTCAACCGGTGATTTTTCC+AGG | - | chr3.2:65416333-65416352 | MS.gene99897:intron | 40.0% |
| !! | CTGGTTCTGCTTCAAGAATA+AGG | - | chr3.2:65416829-65416848 | MS.gene99897:CDS | 40.0% |
| !! | GCCGGTCATTTTCTGTTATT+TGG | + | chr3.2:65416437-65416456 | None:intergenic | 40.0% |
| !! | GTAGGTTACAAAGGTGTTTG+AGG | - | chr3.2:65416733-65416752 | MS.gene99897:intron | 40.0% |
| AAACACGGATATGCCGAATG+CGG | - | chr3.2:65417254-65417273 | MS.gene99897:CDS | 45.0% | |
| ACACAAACTGAACCTGAACC+CGG | - | chr3.2:65416237-65416256 | MS.gene99897:intron | 45.0% | |
| ATGACAGAGACCACACCATA+AGG | + | chr3.2:65417344-65417363 | None:intergenic | 45.0% | |
| ATGGGTCATTCTACAACCTG+TGG | - | chr3.2:65416281-65416300 | MS.gene99897:intron | 45.0% | |
| ATTTAGATCGTCCGAGACCA+CGG | + | chr3.2:65417156-65417175 | None:intergenic | 45.0% | |
| CCAGAACCATTGTCTCTTTG+AGG | + | chr3.2:65416813-65416832 | None:intergenic | 45.0% | |
| CCTCAAAGAGACAATGGTTC+TGG | - | chr3.2:65416810-65416829 | MS.gene99897:CDS | 45.0% | |
| CTTCTAGTAAACGCGCTTCT+GGG | + | chr3.2:65416092-65416111 | None:intergenic | 45.0% | |
| GAATTGGAAGAAGGATCCAC+AGG | + | chr3.2:65416300-65416319 | None:intergenic | 45.0% | |
| GGTTCAGTTTGTGTTTGGGT+TGG | + | chr3.2:65416231-65416250 | None:intergenic | 45.0% | |
| TATGAATTGGCCAAAGCAGC+GGG | + | chr3.2:65416010-65416029 | None:intergenic | 45.0% | |
| TGCCGAATGCGGCAAAATAT+TGG | - | chr3.2:65417265-65417284 | MS.gene99897:CDS | 45.0% | |
| TGTAGAATGACCCATGTACG+TGG | + | chr3.2:65416276-65416295 | None:intergenic | 45.0% | |
| TGTGGTCTCTGTCATGTTCA+TGG | - | chr3.2:65417349-65417368 | MS.gene99897:CDS | 45.0% | |
| TTCTAGTAAACGCGCTTCTG+GGG | + | chr3.2:65416091-65416110 | None:intergenic | 45.0% | |
| TTTATACCTCTTTCCGGCAC+CGG | + | chr3.2:65416471-65416490 | None:intergenic | 45.0% | |
| ! | AATGAGTGTGGTGATGAAGG+TGG | - | chr3.2:65416702-65416721 | MS.gene99897:intron | 45.0% |
| ! | ATTTTTCCAGGTGGACGACA+AGG | - | chr3.2:65416345-65416364 | MS.gene99897:intron | 45.0% |
| ! | GGCCAATATTTTGCCGCATT+CGG | + | chr3.2:65417270-65417289 | None:intergenic | 45.0% |
| ! | TTTTGGCATATCCGTGGTCT+CGG | - | chr3.2:65417142-65417161 | MS.gene99897:CDS | 45.0% |
| !! | GGTTACAAAGGTGTTTGAGG+TGG | - | chr3.2:65416736-65416755 | MS.gene99897:intron | 45.0% |
| !! | TGAAATTGGTGGTGAAGCGA+GGG | - | chr3.2:65416566-65416585 | MS.gene99897:intron | 45.0% |
| !! | TTGAAATTGGTGGTGAAGCG+AGG | - | chr3.2:65416565-65416584 | MS.gene99897:intron | 45.0% |
| AATGTATGACAGAGACCCCC+CGG | + | chr3.2:65417294-65417313 | None:intergenic | 50.0% | |
| ACTTCTTGTGTGGCATGACG+TGG | + | chr3.2:65416177-65416196 | None:intergenic | 50.0% | |
| ATGAATTGGCCAAAGCAGCG+GGG | + | chr3.2:65416009-65416028 | None:intergenic | 50.0% | |
| CACAAACTGAACCTGAACCC+GGG | - | chr3.2:65416238-65416257 | MS.gene99897:intron | 50.0% | |
| CGTCCACCTGGAAAAATCAC+CGG | + | chr3.2:65416342-65416361 | None:intergenic | 50.0% | |
| CTTCTTGTGTGGCATGACGT+GGG | + | chr3.2:65416176-65416195 | None:intergenic | 50.0% | |
| GAATGACCCATGTACGTGGA+CGG | + | chr3.2:65416272-65416291 | None:intergenic | 50.0% | |
| GCTTCTAGTAAACGCGCTTC+TGG | + | chr3.2:65416093-65416112 | None:intergenic | 50.0% | |
| GTGAAGTCTACGACGAGTCT+TGG | + | chr3.2:65416054-65416073 | None:intergenic | 50.0% | |
| TCTACGACGAGTCTTGGTCT+TGG | + | chr3.2:65416048-65416067 | None:intergenic | 50.0% | |
| TCTGGGTTAAAGCGACGGAT+GGG | + | chr3.2:65416138-65416157 | None:intergenic | 50.0% | |
| TGCGGCAAAATATTGGCCAC+CGG | - | chr3.2:65417272-65417291 | MS.gene99897:CDS | 50.0% | |
| TTCTGGGTTAAAGCGACGGA+TGG | + | chr3.2:65416139-65416158 | None:intergenic | 50.0% | |
| ! | CAACCGGTGATTTTTCCAGG+TGG | - | chr3.2:65416336-65416355 | MS.gene99897:intron | 50.0% |
| ! | GGGTTTCTGGGTTAAAGCGA+CGG | + | chr3.2:65416143-65416162 | None:intergenic | 50.0% |
| ! | GTGGTGGAGGTAGGTTACAA+AGG | - | chr3.2:65416724-65416743 | MS.gene99897:intron | 50.0% |
| ! | TCGTCTCTTTGGCCTTTCCA+TGG | - | chr3.2:65416768-65416787 | MS.gene99897:CDS | 50.0% |
| ! | TTCTGGGGAAGGATCATGTG+CGG | + | chr3.2:65416076-65416095 | None:intergenic | 50.0% |
| AAGAAGTTCCAGTGCGCCGT+CGG | - | chr3.2:65416190-65416209 | MS.gene99897:intron | 55.0% | |
| ATGGTGCAATGCAGACGGTG+CGG | + | chr3.2:65415963-65415982 | None:intergenic | 55.0% | |
| ATTGGTCCTTGTCGTCCACC+TGG | + | chr3.2:65416354-65416373 | None:intergenic | 55.0% | |
| CCAACACCGTCCACGTACAT+GGG | - | chr3.2:65416263-65416282 | MS.gene99897:intron | 55.0% | |
| CGACAAGGACCAATTCCACG+CGG | - | chr3.2:65416360-65416379 | MS.gene99897:intron | 55.0% | |
| CGGCAAAATATTGGCCACCG+GGG | - | chr3.2:65417274-65417293 | MS.gene99897:CDS | 55.0% | |
| CTCCGATACCTGCCATGGAA+AGG | + | chr3.2:65416783-65416802 | None:intergenic | 55.0% | |
| GAACTCTCCGATACCTGCCA+TGG | + | chr3.2:65416788-65416807 | None:intergenic | 55.0% | |
| GATGGGTGGGTCAAGCATGA+TGG | + | chr3.2:65416121-65416140 | None:intergenic | 55.0% | |
| GCAAAATATTGGCCACCGGG+GGG | - | chr3.2:65417276-65417295 | MS.gene99897:CDS | 55.0% | |
| GCGCACTGGAACTTCTTGTG+TGG | + | chr3.2:65416187-65416206 | None:intergenic | 55.0% | |
| GCGGCAAAATATTGGCCACC+GGG | - | chr3.2:65417273-65417292 | MS.gene99897:CDS | 55.0% | |
| GGCAAAATATTGGCCACCGG+GGG | - | chr3.2:65417275-65417294 | MS.gene99897:CDS | 55.0% | |
| GGCCTTTCCATGGCAGGTAT+CGG | - | chr3.2:65416778-65416797 | MS.gene99897:CDS | 55.0% | |
| GGTGATGATCTCCTGTCCGA+CGG | + | chr3.2:65416209-65416228 | None:intergenic | 55.0% | |
| GGTTAAAGCGACGGATGGGT+GGG | + | chr3.2:65416134-65416153 | None:intergenic | 55.0% | |
| TCCAACACCGTCCACGTACA+TGG | - | chr3.2:65416262-65416281 | MS.gene99897:intron | 55.0% | |
| TGAATTGGCCAAAGCAGCGG+GGG | + | chr3.2:65416008-65416027 | None:intergenic | 55.0% | |
| TTGATATGCCCCCGCTGCTT+TGG | - | chr3.2:65415997-65416016 | MS.gene99897:intron | 55.0% | |
| ! | AGTAAACGCGCTTCTGGGGA+AGG | + | chr3.2:65416087-65416106 | None:intergenic | 55.0% |
| ! | CTCTTTGGCCTTTCCATGGC+AGG | - | chr3.2:65416772-65416791 | MS.gene99897:CDS | 55.0% |
| ! | GAGTGTGGTGATGAAGGTGG+TGG | - | chr3.2:65416705-65416724 | MS.gene99897:intron | 55.0% |
| ! | TGTGGTGATGAAGGTGGTGG+TGG | - | chr3.2:65416708-65416727 | MS.gene99897:intron | 55.0% |
| !! | ATGAAGGTGGTGGTGGAGGT+AGG | - | chr3.2:65416715-65416734 | MS.gene99897:intron | 55.0% |
| CCCATGTACGTGGACGGTGT+TGG | + | chr3.2:65416266-65416285 | None:intergenic | 60.0% | |
| GCATCAACGCCGCGTGGAAT+TGG | + | chr3.2:65416372-65416391 | None:intergenic | 60.0% | |
| GGGTTAAAGCGACGGATGGG+TGG | + | chr3.2:65416135-65416154 | None:intergenic | 60.0% | |
| TCTCTTGCATCAACGCCGCG+TGG | + | chr3.2:65416378-65416397 | None:intergenic | 60.0% | |
| TGCAGACGGTGCGGTTGCAT+TGG | + | chr3.2:65415954-65415973 | None:intergenic | 60.0% | |
| ! | ACGTGGACGGTGTTGGATCC+CGG | + | chr3.2:65416259-65416278 | None:intergenic | 60.0% |
| ! | ATACCTCTTTCCGGCACCGG+TGG | + | chr3.2:65416468-65416487 | None:intergenic | 60.0% |
| ! | GCGGGGGCATATCAAGTCAG+AGG | + | chr3.2:65415992-65416011 | None:intergenic | 60.0% |
| ! | GGCGTCGGGTTTGGGTTTCT+GGG | + | chr3.2:65416155-65416174 | None:intergenic | 60.0% |
| !! | ATGACGTGGGCGTCGGGTTT+GGG | + | chr3.2:65416163-65416182 | None:intergenic | 60.0% |
| !! | GGTGATGAAGGTGGTGGTGG+AGG | - | chr3.2:65416711-65416730 | MS.gene99897:intron | 60.0% |
| GTATGACAGAGACCCCCCGG+TGG | + | chr3.2:65417291-65417310 | None:intergenic | 65.0% | |
| GTGTGGCATGACGTGGGCGT+CGG | + | chr3.2:65416170-65416189 | None:intergenic | 65.0% | |
| TGTGGCATGACGTGGGCGTC+GGG | + | chr3.2:65416169-65416188 | None:intergenic | 65.0% | |
| ! | CGGTGTTGGATCCCGGGTTC+AGG | + | chr3.2:65416252-65416271 | None:intergenic | 65.0% |
| ! | CGTGGACGGTGTTGGATCCC+GGG | + | chr3.2:65416258-65416277 | None:intergenic | 65.0% |
| !! | CATGACGTGGGCGTCGGGTT+TGG | + | chr3.2:65416164-65416183 | None:intergenic | 65.0% |
| !! | GGGCGTCGGGTTTGGGTTTC+TGG | + | chr3.2:65416156-65416175 | None:intergenic | 65.0% |
| GTTCCAGTGCGCCGTCGGAC+AGG | - | chr3.2:65416195-65416214 | MS.gene99897:intron | 70.0% | |
| TCTCCTGTCCGACGGCGCAC+TGG | + | chr3.2:65416201-65416220 | None:intergenic | 70.0% | |
| TGACCGGCAGGGTCCACCAC+CGG | - | chr3.2:65416449-65416468 | MS.gene99897:intron | 70.0% | |
| ! | CCACCACCGGTGCCGGAAAG+AGG | - | chr3.2:65416462-65416481 | MS.gene99897:intron | 70.0% |
| !! | CCTCTTTCCGGCACCGGTGG+TGG | + | chr3.2:65416465-65416484 | None:intergenic | 70.0% |
| GCAGGGTCCACCACCGGTGC+CGG | - | chr3.2:65416455-65416474 | MS.gene99897:intron | 75.0% | |
| !! | GCACCGGTGGTGGACCCTGC+CGG | + | chr3.2:65416455-65416474 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 65415883 | 65417453 | 65415883 | ID=MS.gene99897 |
| chr3.2 | mRNA | 65415883 | 65417453 | 65415883 | ID=MS.gene99897.t1;Parent=MS.gene99897 |
| chr3.2 | exon | 65416739 | 65417453 | 65416739 | ID=MS.gene99897.t1.exon1;Parent=MS.gene99897.t1 |
| chr3.2 | CDS | 65416739 | 65417453 | 65416739 | ID=cds.MS.gene99897.t1;Parent=MS.gene99897.t1 |
| chr3.2 | exon | 65415883 | 65415887 | 65415883 | ID=MS.gene99897.t1.exon2;Parent=MS.gene99897.t1 |
| chr3.2 | CDS | 65415883 | 65415887 | 65415883 | ID=cds.MS.gene99897.t1;Parent=MS.gene99897.t1 |
| Gene Sequence |
| Protein sequence |
