AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080047900.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 95 sgRNAs with CRISPR-Local

Find 361 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGCTGATATTGCTATTAAT+TGG 0.169007 contig141end:+12630 MsG0080047900.01.T01:CDS
CCGTAAACTAGAGCCATATT+TGG 0.230739 contig141end:+8380 MsG0080047900.01.T01:CDS
TGGTGGTGGAGGTGGTGATA+TGG 0.294154 contig141end:-8025 None:intergenic
ATCTGCAAGGTGGGTAGCTT+TGG 0.311989 contig141end:-8267 None:intergenic
CCAAATATGGCTCTAGTTTA+CGG 0.312899 contig141end:-8380 None:intergenic
GCTTCTGATGGTGGATCTAT+TGG 0.317209 contig141end:+12583 MsG0080047900.01.T01:CDS
GGCGCCGGACGACCCAAATA+TGG 0.344577 contig141end:-8393 None:intergenic
TATGTTAATGACATTGTTCT+TGG 0.345366 contig141end:+12700 MsG0080047900.01.T01:CDS
AGAGGGAGATCATGGTGTTT+TGG 0.353725 contig141end:-8170 None:intergenic
TCGAGCTTCTCAAAGCTCAT+AGG 0.357003 contig141end:+12728 MsG0080047900.01.T01:CDS
AGAATCACCCATGGAGGTTT+CGG 0.368869 contig141end:-8414 None:intergenic
TCTAGATGGAGGTGGGAGTA+TGG 0.370243 contig141end:-7988 None:intergenic
TTCGAGGCCGAGATTCAAAA+TGG 0.384335 contig141end:-8307 None:intergenic
ACGGAAGGATCTTGTAGATC+TGG 0.386797 contig141end:-8068 None:intergenic
CCGTTCTGTCAAGCTTCTGA+TGG 0.402597 contig141end:+12571 MsG0080047900.01.T01:CDS
TGCTGATATTGCTATTAATT+GGG 0.402789 contig141end:+12631 MsG0080047900.01.T01:CDS
AGCAAAAGAGAGGCCTTTCA+TGG 0.407942 contig141end:-8100 None:intergenic
GTTGTGCTGCTAGGCTTAAT+CGG 0.425356 contig141end:+12605 MsG0080047900.01.T01:CDS
AAAACTGTGCAAGCTTTATC+CGG 0.425728 contig141end:-8348 None:intergenic
TGCTAAGAAAGCTGAAGCTC+TGG 0.430743 contig141end:+12670 MsG0080047900.01.T01:CDS
TTGCCGCTCCATCGAGGTAT+AGG 0.433368 contig141end:-8241 None:intergenic
TTCACATGAGGCGGAGGCTC+TGG 0.445228 contig141end:-8210 None:intergenic
CGTAAACTAGAGCCATATTT+GGG 0.445724 contig141end:+8381 MsG0080047900.01.T01:CDS
GTCCGGCGCCGAAACCTCCA+TGG 0.453681 contig141end:+8406 MsG0080047900.01.T01:CDS
ATGTTAATGACATTGTTCTT+GGG 0.456555 contig141end:+12701 MsG0080047900.01.T01:CDS
GAAACAACCCTCCATTGCGG+AGG 0.456879 contig141end:-7905 None:intergenic
GATCTATTGGTTGTGCTGCT+AGG 0.457217 contig141end:+12596 MsG0080047900.01.T01:CDS
ACCCATGGAGGTTTCGGCGC+CGG 0.475692 contig141end:-8408 None:intergenic
AAGACCTCCGCGGAAGCCTC+CGG 0.477964 contig141end:+8329 MsG0080047900.01.T01:CDS
GGGGAAGGCCACTATTACAG+AGG 0.481821 contig141end:-7930 None:intergenic
TAACAAAAGGAACATTCAAA+GGG 0.482724 contig141end:-7955 None:intergenic
TCCCACCTCCATCTAGATCT+AGG 0.489076 contig141end:+7994 MsG0080047900.01.T01:CDS
CAGATCTGAGTGTCTCGGTT+GGG 0.491563 contig141end:-8130 None:intergenic
ACAACCCTCCATTGCGGAGG+GGG 0.492794 contig141end:-7902 None:intergenic
AAGAGGTGTGGTGGTGGAGG+TGG 0.492970 contig141end:-8033 None:intergenic
TGGTGGTAGCATGTAACAAA+AGG 0.500404 contig141end:-7968 None:intergenic
TAGCATAACCTAGATCTAGA+TGG 0.507860 contig141end:-8002 None:intergenic
CTCCAACGAGAGGGAGATCA+TGG 0.509518 contig141end:-8178 None:intergenic
CCTTTCATGGTTGTTGTGGA+CGG 0.510851 contig141end:-8087 None:intergenic
GATATTGCTATTAATTGGGC+TGG 0.513803 contig141end:+12635 MsG0080047900.01.T01:CDS
CGGAAGGATCTTGTAGATCT+GGG 0.514619 contig141end:-8067 None:intergenic
AACATTCAAAGGGGAGGGGA+AGG 0.517061 contig141end:-7945 None:intergenic
GAGGCCTTTCATGGTTGTTG+TGG 0.519012 contig141end:-8091 None:intergenic
AGCAGCAAGAGGTGTGGTGG+TGG 0.519616 contig141end:-8039 None:intergenic
TTCTGTCAAGCTTCTGATGG+TGG 0.522101 contig141end:+12574 MsG0080047900.01.T01:CDS
AGAGCCATATTTGGGTCGTC+CGG 0.523713 contig141end:+8389 MsG0080047900.01.T01:CDS
CGAGCTTCTCAAAGCTCATA+GGG 0.524827 contig141end:+12729 MsG0080047900.01.T01:CDS
TCATGGTTGTTGTGGACGGA+AGG 0.524845 contig141end:-8083 None:intergenic
CACCATGATCTCCCTCTCGT+TGG 0.529343 contig141end:+8176 MsG0080047900.01.T01:CDS
AGCAAGAGGTGTGGTGGTGG+AGG 0.533194 contig141end:-8036 None:intergenic
GCAGATCTGAGTGTCTCGGT+TGG 0.533691 contig141end:-8131 None:intergenic
TGAGGCGGAGGCTCTGGTGG+AGG 0.536800 contig141end:-8204 None:intergenic
AACAACCCTCCATTGCGGAG+GGG 0.537842 contig141end:-7903 None:intergenic
GCTTCCGCGGAGGTCTTTCG+AGG 0.538413 contig141end:-8323 None:intergenic
AAACAACCCTCCATTGCGGA+GGG 0.540276 contig141end:-7904 None:intergenic
GTAACAAAAGGAACATTCAA+AGG 0.541860 contig141end:-7956 None:intergenic
AAAGGAACATTCAAAGGGGA+GGG 0.542471 contig141end:-7950 None:intergenic
GCTTTATCCGGAGGCTTCCG+CGG 0.545636 contig141end:-8336 None:intergenic
ATTGCTATTAATTGGGCTGG+TGG 0.550153 contig141end:+12638 MsG0080047900.01.T01:CDS
AACCTAGATCTAGATGGAGG+TGG 0.551286 contig141end:-7996 None:intergenic
TACTCAGTTATCTGCAAGGT+GGG 0.560046 contig141end:-8276 None:intergenic
ACATGAGGCGGAGGCTCTGG+TGG 0.565922 contig141end:-8207 None:intergenic
AAGGGCAGATCTGAGTGTCT+CGG 0.571569 contig141end:-8135 None:intergenic
ATGTGATTCACATGAGGCGG+AGG 0.572336 contig141end:-8216 None:intergenic
ACCTAGATCTAGATGGAGGT+GGG 0.586412 contig141end:-7995 None:intergenic
GTGGAGGACGCTCCAACGAG+AGG 0.592528 contig141end:-8188 None:intergenic
TCCGGCGCCGAAACCTCCAT+GGG 0.594090 contig141end:+8407 MsG0080047900.01.T01:CDS
CCGTCCACAACAACCATGAA+AGG 0.605059 contig141end:+8087 MsG0080047900.01.T01:CDS
TGGAGGACGCTCCAACGAGA+GGG 0.615010 contig141end:-8187 None:intergenic
CCATCAGAAGCTTGACAGAA+CGG 0.620973 contig141end:-12571 None:intergenic
TGGTTGTTGCCGCTCCATCG+AGG 0.622153 contig141end:-8247 None:intergenic
AAAAGGAACATTCAAAGGGG+AGG 0.624985 contig141end:-7951 None:intergenic
TCACATCTCCTATACCTCGA+TGG 0.627551 contig141end:+8233 MsG0080047900.01.T01:CDS
GTCGTACTCAGTTATCTGCA+AGG 0.628673 contig141end:-8280 None:intergenic
GGGAAGGCCACTATTACAGA+GGG 0.630483 contig141end:-7929 None:intergenic
AGATGGAGGTGGGAGTATGG+TGG 0.630991 contig141end:-7985 None:intergenic
TTAAGCAGCAAGAGGTGTGG+TGG 0.631109 contig141end:-8042 None:intergenic
GGCCGAGATTCAAAATGGAT+AGG 0.633944 contig141end:-8302 None:intergenic
GAGATGTGATTCACATGAGG+CGG 0.639898 contig141end:-8219 None:intergenic
TCTCCTATACCTCGATGGAG+CGG 0.649218 contig141end:+8238 MsG0080047900.01.T01:CDS
ACTGTGCAAGCTTTATCCGG+AGG 0.650634 contig141end:-8345 None:intergenic
TTATCCGGAGGCTTCCGCGG+AGG 0.650861 contig141end:-8333 None:intergenic
TCTGGGCTTTAAGCAGCAAG+AGG 0.661648 contig141end:-8050 None:intergenic
GGGCGTCAAAAGCAAAAGAG+AGG 0.668146 contig141end:-8110 None:intergenic
TAGGAGATGTGATTCACATG+AGG 0.675147 contig141end:-8222 None:intergenic
CATAACCTAGATCTAGATGG+AGG 0.675640 contig141end:-7999 None:intergenic
AAGGAACATTCAAAGGGGAG+GGG 0.677760 contig141end:-7949 None:intergenic
GCTTTAAGCAGCAAGAGGTG+TGG 0.678150 contig141end:-8045 None:intergenic
GAAGGCCACTATTACAGAGG+GGG 0.684701 contig141end:-7927 None:intergenic
AACAAAAGGAACATTCAAAG+GGG 0.724557 contig141end:-7954 None:intergenic
GGGGAAACAACCCTCCATTG+CGG 0.729928 contig141end:-7908 None:intergenic
GTACTCAGTTATCTGCAAGG+TGG 0.730464 contig141end:-8277 None:intergenic
AAACTGAGAATCACCCATGG+AGG 0.738818 contig141end:-8420 None:intergenic
GGAAGGCCACTATTACAGAG+GGG 0.754001 contig141end:-7928 None:intergenic
TCGGCCTCGAAAGACCTCCG+CGG 0.760094 contig141end:+8319 MsG0080047900.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAACATTTAACA+AGG - contig141end:12781-12800 None:intergenic 10.0%
!! AAAAAAAAAATACATTATGT+CGG - contig141end:11916-11935 None:intergenic 10.0%
!! AGAAAAAGAAAAAAAAAATT+AGG - contig141end:12060-12079 None:intergenic 10.0%
!! TAAAACAATTATGAAATTAT+TGG - contig141end:11786-11805 None:intergenic 10.0%
!!! GATTAATTTTTCATATTTAT+TGG + contig141end:8833-8852 MsG0080047900.01.T01:intron 10.0%
!!! TGAAAATTAAATTTTAATGT+TGG + contig141end:10493-10512 MsG0080047900.01.T01:intron 10.0%
!! AATAAAACGTTATTAACAAA+CGG + contig141end:12131-12150 MsG0080047900.01.T01:intron 15.0%
!! ACTAAAAGTTAACTTATATA+TGG - contig141end:12086-12105 None:intergenic 15.0%
!! ATTTCAAAAATATATTTACG+TGG + contig141end:10280-10299 MsG0080047900.01.T01:intron 15.0%
!! TAGTACTAAAAGAAATTAAA+TGG + contig141end:9628-9647 MsG0080047900.01.T01:intron 15.0%
!! TTATTTAGATTGAAAGAAAA+GGG + contig141end:10093-10112 MsG0080047900.01.T01:intron 15.0%
!!! ACGTTATATATCAAAATTTT+AGG + contig141end:11958-11977 MsG0080047900.01.T01:intron 15.0%
!!! GGTTTTATCATATTATTTAT+AGG - contig141end:9848-9867 None:intergenic 15.0%
!!! TTTTTCTTGTGTTTTTTTTT+TGG - contig141end:10051-10070 None:intergenic 15.0%
!! AAGAGATAATACAAGATAAA+AGG - contig141end:8896-8915 None:intergenic 20.0%
!! ACAAATTTAACGAATGATTT+AGG - contig141end:9915-9934 None:intergenic 20.0%
!! ATTATCTCTTCAAAATTGTT+GGG + contig141end:8906-8925 MsG0080047900.01.T01:intron 20.0%
!! CATATACCAAATTAAAAACA+TGG - contig141end:10453-10472 None:intergenic 20.0%
!! CTTATTTAGATTGAAAGAAA+AGG + contig141end:10092-10111 MsG0080047900.01.T01:intron 20.0%
!! TATTATCTCTTCAAAATTGT+TGG + contig141end:8905-8924 MsG0080047900.01.T01:intron 20.0%
!! TATTTATGTCCAAAATATGT+AGG - contig141end:11045-11064 None:intergenic 20.0%
!! TTGTTTGAAAATATACATGT+TGG - contig141end:9094-9113 None:intergenic 20.0%
!! TTTCTTTCAATCTAAATAAG+TGG - contig141end:10092-10111 None:intergenic 20.0%
!!! AATTTTGATATATAACGTCT+AGG - contig141end:11956-11975 None:intergenic 20.0%
!!! ATAATTAAACCGATGTTTTA+TGG + contig141end:11754-11773 MsG0080047900.01.T01:intron 20.0%
!!! ATGTATATTTTCAAACAACA+CGG + contig141end:9096-9115 MsG0080047900.01.T01:intron 20.0%
!!! GCTTTAAATTGTAAAAGAAA+AGG - contig141end:9057-9076 None:intergenic 20.0%
!!! TTGTCTTAAATTTTGGTATT+GGG - contig141end:11281-11300 None:intergenic 20.0%
!!! TTTAATTTGGTATATGTTGA+TGG + contig141end:10457-10476 MsG0080047900.01.T01:intron 20.0%
! AAACATCACTAAAAACGTAA+AGG + contig141end:9766-9785 MsG0080047900.01.T01:intron 25.0%
! AAGGGTAAAAAAATATGTAG+AGG + contig141end:10111-10130 MsG0080047900.01.T01:intron 25.0%
! AGGGTAAAAAAATATGTAGA+GGG + contig141end:10112-10131 MsG0080047900.01.T01:intron 25.0%
! ATGTCTATTGTTTGAAAGTT+TGG + contig141end:10896-10915 MsG0080047900.01.T01:intron 25.0%
! ATGTTAATGACATTGTTCTT+GGG + contig141end:12701-12720 MsG0080047900.01.T01:CDS 25.0%
! CAAAGTGAAAAATATCAAAG+TGG - contig141end:9237-9256 None:intergenic 25.0%
! CCTGAAAATCAACATTTAAT+AGG + contig141end:8870-8889 MsG0080047900.01.T01:intron 25.0%
! GATTTGTGTTTATGTTTCAT+GGG + contig141end:8531-8550 MsG0080047900.01.T01:intron 25.0%
! TAACAAAAGGAACATTCAAA+GGG - contig141end:7958-7977 None:intergenic 25.0%
! TATGTATACCTAATGTCTTA+AGG - contig141end:10996-11015 None:intergenic 25.0%
! TATGTTAATGACATTGTTCT+TGG + contig141end:12700-12719 MsG0080047900.01.T01:CDS 25.0%
! TGTCTATTGTTTGAAAGTTT+GGG + contig141end:10897-10916 MsG0080047900.01.T01:intron 25.0%
! TTAACACCCTTAAAATTGAT+GGG - contig141end:9428-9447 None:intergenic 25.0%
! TTATCTCTTCAAAATTGTTG+GGG + contig141end:8907-8926 MsG0080047900.01.T01:intron 25.0%
! TTGTTGTATGCTATTAACTT+GGG - contig141end:9818-9837 None:intergenic 25.0%
! TTTAACACCCTTAAAATTGA+TGG - contig141end:9429-9448 None:intergenic 25.0%
! TTTCTTTCACTAGAAAACTA+GGG + contig141end:10216-10235 MsG0080047900.01.T01:intron 25.0%
! TTTGCATTTCTTAACGAATA+GGG + contig141end:10415-10434 MsG0080047900.01.T01:intron 25.0%
!! AACATATCACCTACATATTT+TGG + contig141end:11033-11052 MsG0080047900.01.T01:intron 25.0%
!! AGTTATTAACTGTCATGTTT+TGG - contig141end:11547-11566 None:intergenic 25.0%
!! ATACCAAAATTTAAGACAAC+AGG + contig141end:11282-11301 MsG0080047900.01.T01:intron 25.0%
!! ATACCTGTTGTCTTAAATTT+TGG - contig141end:11288-11307 None:intergenic 25.0%
!! ATGCTGATATTGCTATTAAT+TGG + contig141end:12630-12649 MsG0080047900.01.T01:CDS 25.0%
!! TGATTTGTGTTTATGTTTCA+TGG + contig141end:8530-8549 MsG0080047900.01.T01:intron 25.0%
!! TGCTGATATTGCTATTAATT+GGG + contig141end:12631-12650 MsG0080047900.01.T01:CDS 25.0%
!! TGTATTATTTTCAATCAAGG+TGG - contig141end:9129-9148 None:intergenic 25.0%
!! TTTTGCATTTCTTAACGAAT+AGG + contig141end:10414-10433 MsG0080047900.01.T01:intron 25.0%
!!! ACTAGAGTAAGAACTTTTTT+AGG + contig141end:11430-11449 MsG0080047900.01.T01:intron 25.0%
!!! ATTCTAAAATCACTCGATTT+TGG + contig141end:11690-11709 MsG0080047900.01.T01:intron 25.0%
!!! CCTATTAAATGTTGATTTTC+AGG - contig141end:8873-8892 None:intergenic 25.0%
!!! CTAGAGTAAGAACTTTTTTA+GGG + contig141end:11431-11450 MsG0080047900.01.T01:intron 25.0%
!!! GTTGTCTTAAATTTTGGTAT+TGG - contig141end:11282-11301 None:intergenic 25.0%
!!! TAGAGTAAGAACTTTTTTAG+GGG + contig141end:11432-11451 MsG0080047900.01.T01:intron 25.0%
!!! TCTTTTTTTCTATCCAGTTA+CGG - contig141end:8734-8753 None:intergenic 25.0%
!!! TTGCAACAATTTTTCAATAC+CGG + contig141end:10786-10805 MsG0080047900.01.T01:intron 25.0%
!!! TTTGGTCCATGTTTTTAATT+TGG + contig141end:10444-10463 MsG0080047900.01.T01:intron 25.0%
AAAAAGTTCTTACTCTAGTG+TGG - contig141end:11429-11448 None:intergenic 30.0%
AAAACGTTATTAACAAACGG+CGG + contig141end:12134-12153 MsG0080047900.01.T01:intron 30.0%
AAATCTCACATCCACTATAA+TGG - contig141end:11340-11359 None:intergenic 30.0%
AACAAAAGGAACATTCAAAG+GGG - contig141end:7957-7976 None:intergenic 30.0%
AAGAAAGTTTAGAGAGAAGT+TGG + contig141end:10191-10210 MsG0080047900.01.T01:intron 30.0%
AAGTAAAAACCAAACCCATA+TGG - contig141end:10625-10644 None:intergenic 30.0%
ACGTTCACACATCTAATATT+AGG + contig141end:11118-11137 MsG0080047900.01.T01:intron 30.0%
ATAACAAGAGGAAGAACAAA+CGG - contig141end:10242-10261 None:intergenic 30.0%
ATAACGTTTCTCCATTATAG+TGG + contig141end:11326-11345 MsG0080047900.01.T01:intron 30.0%
ATAATTCGCATCCTCATAAT+CGG + contig141end:12494-12513 MsG0080047900.01.T01:intron 30.0%
ATCATACTCCACGATAAAAA+CGG + contig141end:9288-9307 MsG0080047900.01.T01:intron 30.0%
ATGTCTTTAAGTGCAAATCT+AGG - contig141end:12925-12944 None:intergenic 30.0%
CAACAGGTGTAAATATTGAA+GGG - contig141end:8938-8957 None:intergenic 30.0%
CATAGAAGAAACATAACAAG+AGG - contig141end:10254-10273 None:intergenic 30.0%
CGATAAAAACGGTAAACTTA+TGG + contig141end:9299-9318 MsG0080047900.01.T01:intron 30.0%
CTGGATAGAAAAAAAGACTT+TGG + contig141end:8737-8756 MsG0080047900.01.T01:intron 30.0%
CTTGACTTAAAAATTCCACA+AGG + contig141end:9390-9409 MsG0080047900.01.T01:intron 30.0%
GAATTATCCTTAACAATCTC+CGG - contig141end:12481-12500 None:intergenic 30.0%
GGGTAAAAAAATATGTAGAG+GGG + contig141end:10113-10132 MsG0080047900.01.T01:intron 30.0%
GTAACAAAAGGAACATTCAA+AGG - contig141end:7959-7978 None:intergenic 30.0%
GTTGTTGTATGCTATTAACT+TGG - contig141end:9819-9838 None:intergenic 30.0%
GTTTCTTTCACTAGAAAACT+AGG + contig141end:10215-10234 MsG0080047900.01.T01:intron 30.0%
TAACACCCTTAAAATTGATG+GGG - contig141end:9427-9446 None:intergenic 30.0%
TCAAAAAAATGATCCGTAAC+TGG + contig141end:8718-8737 MsG0080047900.01.T01:intron 30.0%
TGTGTGGTTGAGTTAAAAAA+TGG - contig141end:9521-9540 None:intergenic 30.0%
TTAGTACACGATTATTGACA+TGG - contig141end:9333-9352 None:intergenic 30.0%
TTGGTTGTTCTTTCAGAATT+TGG + contig141end:11709-11728 MsG0080047900.01.T01:intron 30.0%
TTTGCATCATAAAAGAAGAC+CGG - contig141end:10808-10827 None:intergenic 30.0%
TTTGTGTTTCTCTTATGTTG+CGG - contig141end:9587-9606 None:intergenic 30.0%
! AAAGTTGATTAAGGTGTTTG+TGG - contig141end:10734-10753 None:intergenic 30.0%
! AAGATAAAAAGCATGCAGTT+TGG - contig141end:10668-10687 None:intergenic 30.0%
! ACCTAATGTCTTAAGGTTTT+GGG - contig141end:10989-11008 None:intergenic 30.0%
! GGGTGTATTATTTTCAATCA+AGG - contig141end:9132-9151 None:intergenic 30.0%
! TAAAGCTTGCACAGTTTTTA+AGG + contig141end:8353-8372 MsG0080047900.01.T01:CDS 30.0%
! TACCTAATGTCTTAAGGTTT+TGG - contig141end:10990-11009 None:intergenic 30.0%
! TATAAATGCATCCGAACTTT+TGG - contig141end:9498-9517 None:intergenic 30.0%
! TTACGGTTTTTCTATTGAGT+TGG - contig141end:9459-9478 None:intergenic 30.0%
!! AAGCTTTGTAGTCTTTTATG+AGG + contig141end:8590-8609 MsG0080047900.01.T01:intron 30.0%
!! TAAATTTTGGTATTGGGATG+TGG - contig141end:11275-11294 None:intergenic 30.0%
!! TAAGTTTACCGTTTTTATCG+TGG - contig141end:9299-9318 None:intergenic 30.0%
!! TTCTGAAGTGAATTTCTGAT+GGG + contig141end:12173-12192 MsG0080047900.01.T01:intron 30.0%
!! TTTCTGAAGTGAATTTCTGA+TGG + contig141end:12172-12191 MsG0080047900.01.T01:intron 30.0%
!!! ATTAACTGTCATGTTTTGGT+CGG - contig141end:11543-11562 None:intergenic 30.0%
!!! ATTTTTTCACTTTGTCATGC+TGG - contig141end:8662-8681 None:intergenic 30.0%
!!! CTTGTGGAATTTTTAAGTCA+AGG - contig141end:9392-9411 None:intergenic 30.0%
!!! TAACGAATAGGGTTGTTTTT+TGG + contig141end:10426-10445 MsG0080047900.01.T01:intron 30.0%
AAAACCAAACCCATATGGTT+TGG - contig141end:10620-10639 None:intergenic 35.0%
AAACCAAACCCATATGGTTT+GGG - contig141end:10619-10638 None:intergenic 35.0%
AAACGTTATTAACAAACGGC+GGG + contig141end:12135-12154 MsG0080047900.01.T01:intron 35.0%
AACACCCTTAAAATTGATGG+GGG - contig141end:9426-9445 None:intergenic 35.0%
ACCAACTCAAACCAAAAGTT+CGG + contig141end:9484-9503 MsG0080047900.01.T01:intron 35.0%
ACCCAAAACCTTAAGACATT+AGG + contig141end:10985-11004 MsG0080047900.01.T01:intron 35.0%
ACGCGAAATTAACCAAAACT+GGG + contig141end:11805-11824 MsG0080047900.01.T01:intron 35.0%
AGACAGTAAATCGAATTGTG+TGG - contig141end:9537-9556 None:intergenic 35.0%
ATTTCGACTAATCTTGGTCT+CGG - contig141end:8685-8704 None:intergenic 35.0%
CAAGTTCCATTGTGAAGTTT+AGG - contig141end:10763-10782 None:intergenic 35.0%
CACCAACAATCAAAACTCAA+AGG - contig141end:8564-8583 None:intergenic 35.0%
CATCAGCTGATAAAAGACAA+AGG - contig141end:8634-8653 None:intergenic 35.0%
CGTAAACTAGAGCCATATTT+GGG + contig141end:8381-8400 MsG0080047900.01.T01:CDS 35.0%
CGTTTATTTGCATATGATGG+TGG - contig141end:12384-12403 None:intergenic 35.0%
CTGTTGAAGAGGTTTAATGT+TGG + contig141end:12517-12536 MsG0080047900.01.T01:intron 35.0%
GCAACAGGTGTAAATATTGA+AGG - contig141end:8939-8958 None:intergenic 35.0%
GGACGTTTATTTGCATATGA+TGG - contig141end:12387-12406 None:intergenic 35.0%
GGTGATTATTACTATGGTCA+AGG + contig141end:12299-12318 MsG0080047900.01.T01:intron 35.0%
GTGAGTGTGTGAAAAATATG+AGG - contig141end:11655-11674 None:intergenic 35.0%
TACGCGAAATTAACCAAAAC+TGG + contig141end:11804-11823 MsG0080047900.01.T01:intron 35.0%
TAGCATAACCTAGATCTAGA+TGG - contig141end:8005-8024 None:intergenic 35.0%
TAGTAATAATCACCGATGCT+TGG - contig141end:12293-12312 None:intergenic 35.0%
TGGAAAACGCCATAAAACAT+CGG - contig141end:11766-11785 None:intergenic 35.0%
TTGAACTATGATTGTCGATG+AGG - contig141end:9166-9185 None:intergenic 35.0%
TTTCGATATGAAACGTGTCT+AGG - contig141end:11992-12011 None:intergenic 35.0%
! AAAAAGCATGCAGTTTGGTT+TGG - contig141end:10663-10682 None:intergenic 35.0%
! AAAACTGTGCAAGCTTTATC+CGG - contig141end:8351-8370 None:intergenic 35.0%
! ACAATAGACATCAGAGCTTT+TGG - contig141end:10887-10906 None:intergenic 35.0%
! AGGCTAGAGAAAGTTGATTA+AGG - contig141end:10743-10762 None:intergenic 35.0%
! CATGGGTATTTCTATGACTT+AGG - contig141end:9869-9888 None:intergenic 35.0%
! GACCTATCCATTTTGAATCT+CGG + contig141end:8300-8319 MsG0080047900.01.T01:CDS 35.0%
! GATATTGCTATTAATTGGGC+TGG + contig141end:12635-12654 MsG0080047900.01.T01:CDS 35.0%
! GTGTGTGTTTTACTCATTCA+TGG + contig141end:12886-12905 MsG0080047900.01.T01:intron 35.0%
! TGAAATTTACTGCCCAGTTT+TGG - contig141end:11820-11839 None:intergenic 35.0%
! TTACCCCCCATCAATTTTAA+GGG + contig141end:9419-9438 MsG0080047900.01.T01:intron 35.0%
! TTTACCCCCCATCAATTTTA+AGG + contig141end:9418-9437 MsG0080047900.01.T01:intron 35.0%
!! AGCATCGGTGATTATTACTA+TGG + contig141end:12293-12312 MsG0080047900.01.T01:intron 35.0%
!! CCAAATATGGCTCTAGTTTA+CGG - contig141end:8383-8402 None:intergenic 35.0%
!!! ACTTTTGGTTTGAGTTGGTT+CGG - contig141end:9483-9502 None:intergenic 35.0%
!!! AGCCTTTGAGTTTTGATTGT+TGG + contig141end:8559-8578 MsG0080047900.01.T01:intron 35.0%
!!! GGCAATTAGGTTCTGAATTT+TGG + contig141end:8811-8830 MsG0080047900.01.T01:intron 35.0%
!!! TAATGTCTTAAGGTTTTGGG+TGG - contig141end:10986-11005 None:intergenic 35.0%
AAAAGGAACATTCAAAGGGG+AGG - contig141end:7954-7973 None:intergenic 40.0%
AAAGGAACATTCAAAGGGGA+GGG - contig141end:7953-7972 None:intergenic 40.0%
ACAACGAGTCTAAATGCTCT+AGG + contig141end:11230-11249 MsG0080047900.01.T01:intron 40.0%
ACACCCTTAAAATTGATGGG+GGG - contig141end:9425-9444 None:intergenic 40.0%
ACCCTTTGATTGCCAAGTTT+AGG + contig141end:11464-11483 MsG0080047900.01.T01:intron 40.0%
ATATGTAGAGGGGTGATTCT+AGG + contig141end:10123-10142 MsG0080047900.01.T01:intron 40.0%
ATGATTGTCGATGAGGATAC+TGG - contig141end:9159-9178 None:intergenic 40.0%
CACGTATCATCAGAGTGAAA+CGG - contig141end:12437-12456 None:intergenic 40.0%
CATAACCTAGATCTAGATGG+AGG - contig141end:8002-8021 None:intergenic 40.0%
CCATCTTCTAATGCTGACAA+AGG - contig141end:8775-8794 None:intergenic 40.0%
CCGTAAACTAGAGCCATATT+TGG + contig141end:8380-8399 MsG0080047900.01.T01:CDS 40.0%
CCTTTGTCAGCATTAGAAGA+TGG + contig141end:8772-8791 MsG0080047900.01.T01:intron 40.0%
CTATCATGTCTGCCTAAACT+TGG - contig141end:11479-11498 None:intergenic 40.0%
CTCTAGCCTAAACTTCACAA+TGG + contig141end:10754-10773 MsG0080047900.01.T01:intron 40.0%
CTTGAGGTCCTTAAGCATTT+GGG - contig141end:10944-10963 None:intergenic 40.0%
GATACATTCAGGATTGCACA+AGG - contig141end:9362-9381 None:intergenic 40.0%
GCCTAAACTTGGCAATCAAA+GGG - contig141end:11468-11487 None:intergenic 40.0%
GGAAAAAGTCCATCGAAAAC+TGG - contig141end:12553-12572 None:intergenic 40.0%
GTGGATCAAACTAGTGATGT+GGG - contig141end:11410-11429 None:intergenic 40.0%
GTTTCTCTTATGTTGCGGTT+TGG - contig141end:9582-9601 None:intergenic 40.0%
GTTTGAAAGTTTGGGAGTTG+CGG + contig141end:10905-10924 MsG0080047900.01.T01:intron 40.0%
TACTCAGTTATCTGCAAGGT+GGG - contig141end:8279-8298 None:intergenic 40.0%
TACTTCTACGAACCAAGCAT+CGG + contig141end:12278-12297 MsG0080047900.01.T01:intron 40.0%
TAGGAGATGTGATTCACATG+AGG - contig141end:8225-8244 None:intergenic 40.0%
TCTTGAGGTCCTTAAGCATT+TGG - contig141end:10945-10964 None:intergenic 40.0%
TCTTTCTCCTTCGTTCATTG+AGG - contig141end:10175-10194 None:intergenic 40.0%
TGCAAGTGAGTGAAAATCTG+AGG - contig141end:11625-11644 None:intergenic 40.0%
TGCCTAAACTTGGCAATCAA+AGG - contig141end:11469-11488 None:intergenic 40.0%
TGGATCAAACTAGTGATGTG+GGG - contig141end:11409-11428 None:intergenic 40.0%
TGGTGGTAGCATGTAACAAA+AGG - contig141end:7971-7990 None:intergenic 40.0%
TGTGGATCAAACTAGTGATG+TGG - contig141end:11411-11430 None:intergenic 40.0%
TGTGGTGTATCACTCTCTTA+TGG - contig141end:11257-11276 None:intergenic 40.0%
TTTGAAAGTTTGGGAGTTGC+GGG + contig141end:10906-10925 MsG0080047900.01.T01:intron 40.0%
! AAGGATGTGCTGATACATTC+AGG - contig141end:9373-9392 None:intergenic 40.0%
! AGATGGAAGCTGTTGATAGA+TGG + contig141end:8789-8808 MsG0080047900.01.T01:intron 40.0%
! AGTGAATTTCTGATGGGTAG+CGG + contig141end:12179-12198 MsG0080047900.01.T01:intron 40.0%
! ATTGCTATTAATTGGGCTGG+TGG + contig141end:12638-12657 MsG0080047900.01.T01:CDS 40.0%
! CTGTTGATAGATGGGCAATT+AGG + contig141end:8798-8817 MsG0080047900.01.T01:intron 40.0%
! GATGATTGTCCAGTTTTCGA+TGG + contig141end:12541-12560 MsG0080047900.01.T01:intron 40.0%
! GATGGAAGCTGTTGATAGAT+GGG + contig141end:8790-8809 MsG0080047900.01.T01:intron 40.0%
! TGATTAAGGTGTTTGTGGTG+CGG - contig141end:10729-10748 None:intergenic 40.0%
!! AGACATCAGAGCTTTTGGTT+TGG - contig141end:10882-10901 None:intergenic 40.0%
!! AGCTTGCACAGTTTTTAAGG+TGG + contig141end:8356-8375 MsG0080047900.01.T01:CDS 40.0%
!! GTTTGAGTTGGTTCGGTTTA+CGG - contig141end:9476-9495 None:intergenic 40.0%
!! TAGAGAGTGTTACAAGCAAC+AGG - contig141end:8954-8973 None:intergenic 40.0%
!!! AGAGCTTTTGGTTTGGTTAG+AGG - contig141end:10875-10894 None:intergenic 40.0%
!!! TCCGAACTTTTGGTTTGAGT+TGG - contig141end:9488-9507 None:intergenic 40.0%
!!! TGCGGTTGGTTTCAATTTTG+AGG - contig141end:10711-10730 None:intergenic 40.0%
!!! TTTTGGAGTGGTAGCTCAAA+GGG - contig141end:8156-8175 None:intergenic 40.0%
AAACTGAGAATCACCCATGG+AGG - contig141end:8423-8442 None:intergenic 45.0%
AACCTAGATCTAGATGGAGG+TGG - contig141end:7999-8018 None:intergenic 45.0%
AAGGAACATTCAAAGGGGAG+GGG - contig141end:7952-7971 None:intergenic 45.0%
ACCTAGATCTAGATGGAGGT+GGG - contig141end:7998-8017 None:intergenic 45.0%
ACGATGAATTGTGTGCCATG+CGG - contig141end:12349-12368 None:intergenic 45.0%
ACGATGCAGATCTGGAAACA+TGG - contig141end:9887-9906 None:intergenic 45.0%
ACGCGCATTTCGACTAATCT+TGG - contig141end:8691-8710 None:intergenic 45.0%
ACGGAAGGATCTTGTAGATC+TGG - contig141end:8071-8090 None:intergenic 45.0%
AGAATCACCCATGGAGGTTT+CGG - contig141end:8417-8436 None:intergenic 45.0%
AGCAAAAGAGAGGCCTTTCA+TGG - contig141end:8103-8122 None:intergenic 45.0%
CAACCCAAACCATATGGGTT+TGG + contig141end:10613-10632 MsG0080047900.01.T01:intron 45.0%
CACAAACTGAGAATCACCCA+TGG - contig141end:8426-8445 None:intergenic 45.0%
CCATCAGAAGCTTGACAGAA+CGG - contig141end:12574-12593 None:intergenic 45.0%
CCTTTCATGGTTGTTGTGGA+CGG - contig141end:8090-8109 None:intergenic 45.0%
CGAACCAACCCAAACCATAT+GGG + contig141end:10608-10627 MsG0080047900.01.T01:intron 45.0%
CGAGCTTCTCAAAGCTCATA+GGG + contig141end:12729-12748 MsG0080047900.01.T01:CDS 45.0%
CGATGCAGATCTGGAAACAT+GGG - contig141end:9886-9905 None:intergenic 45.0%
CGGAAGGATCTTGTAGATCT+GGG - contig141end:8070-8089 None:intergenic 45.0%
CGTTTCACTCTGATGATACG+TGG + contig141end:12435-12454 MsG0080047900.01.T01:intron 45.0%
CTCATAATCGGCTGTTGAAG+AGG + contig141end:12506-12525 MsG0080047900.01.T01:intron 45.0%
CTCTTCAACAGCCGATTATG+AGG - contig141end:12508-12527 None:intergenic 45.0%
GAGATGTGATTCACATGAGG+CGG - contig141end:8222-8241 None:intergenic 45.0%
GGCCGAGATTCAAAATGGAT+AGG - contig141end:8305-8324 None:intergenic 45.0%
GTACTCAGTTATCTGCAAGG+TGG - contig141end:8280-8299 None:intergenic 45.0%
GTCGTACTCAGTTATCTGCA+AGG - contig141end:8283-8302 None:intergenic 45.0%
GTGAAACGGCGAATATCTTC+CGG - contig141end:12423-12442 None:intergenic 45.0%
GTTTCTCTCTTCTGTTTCGC+CGG + contig141end:12459-12478 MsG0080047900.01.T01:intron 45.0%
TCACATCTCCTATACCTCGA+TGG + contig141end:8233-8252 MsG0080047900.01.T01:CDS 45.0%
TCGAGCTTCTCAAAGCTCAT+AGG + contig141end:12728-12747 MsG0080047900.01.T01:CDS 45.0%
TCGATGAGGATACTGGAAGT+GGG - contig141end:9152-9171 None:intergenic 45.0%
TGCGGTATCTCAATCTCTTG+AGG - contig141end:10960-10979 None:intergenic 45.0%
TGCTAAGAAAGCTGAAGCTC+TGG + contig141end:12670-12689 MsG0080047900.01.T01:CDS 45.0%
TGGATTTCGTCGTCTAAGTG+CGG - contig141end:10031-10050 None:intergenic 45.0%
TGTGTGAACGTACACACTTG+CGG - contig141end:11109-11128 None:intergenic 45.0%
TGTTTCCCCCTCTGTAATAG+TGG + contig141end:7922-7941 MsG0080047900.01.T01:CDS 45.0%
TGTTTCGCCGGAGATTGTTA+AGG + contig141end:12471-12490 MsG0080047900.01.T01:intron 45.0%
TTCGAGGCCGAGATTCAAAA+TGG - contig141end:8310-8329 None:intergenic 45.0%
TTCTCCTTCGTTCATTGAGG+AGG - contig141end:10172-10191 None:intergenic 45.0%
TTCTGTCAAGCTTCTGATGG+TGG + contig141end:12574-12593 MsG0080047900.01.T01:CDS 45.0%
! ACCACTTGTTGGGGAGTTTA+GGG + contig141end:11195-11214 MsG0080047900.01.T01:intron 45.0%
! AGAGGGAGATCATGGTGTTT+TGG - contig141end:8173-8192 None:intergenic 45.0%
! CAAACCCATATGGTTTGGGT+TGG - contig141end:10615-10634 None:intergenic 45.0%
! GATCTATTGGTTGTGCTGCT+AGG + contig141end:12596-12615 MsG0080047900.01.T01:CDS 45.0%
! GTTGTGCTGCTAGGCTTAAT+CGG + contig141end:12605-12624 MsG0080047900.01.T01:CDS 45.0%
! TACCACTTGTTGGGGAGTTT+AGG + contig141end:11194-11213 MsG0080047900.01.T01:intron 45.0%
! TTTGATTTCGCGTCTTGTCG+CGG - contig141end:9979-9998 None:intergenic 45.0%
!! AGGGTTTGCTAGAATGCAAG+TGG - contig141end:11369-11388 None:intergenic 45.0%
!! ATTGCATCAGTGCCGATTGA+AGG - contig141end:12242-12261 None:intergenic 45.0%
!! CATGCAGTTTGGTTTGGTTC+AGG - contig141end:10657-10676 None:intergenic 45.0%
!! CCATATGGTTTGGGTTGGTT+CGG - contig141end:10610-10629 None:intergenic 45.0%
!! GCTTCTGATGGTGGATCTAT+TGG + contig141end:12583-12602 MsG0080047900.01.T01:CDS 45.0%
!! TATGATGGTGGAGAGAGTAG+TGG - contig141end:12372-12391 None:intergenic 45.0%
!! TGTTGCGGTTTGGTTTGACT+CGG - contig141end:9572-9591 None:intergenic 45.0%
!! TTGGGTTGGTTCGGTTGTTA+CGG - contig141end:10601-10620 None:intergenic 45.0%
!!! GAGATCATGGTGTTTTGGAG+TGG - contig141end:8168-8187 None:intergenic 45.0%
!!! GTTTTGGAGTGGTAGCTCAA+AGG - contig141end:8157-8176 None:intergenic 45.0%
!!! TAAGGTTTTGGGTGGAGATG+CGG - contig141end:10978-10997 None:intergenic 45.0%
AAACAACCCTCCATTGCGGA+GGG - contig141end:7907-7926 None:intergenic 50.0%
AACATTCAAAGGGGAGGGGA+AGG - contig141end:7948-7967 None:intergenic 50.0%
AAGGGCAGATCTGAGTGTCT+CGG - contig141end:8138-8157 None:intergenic 50.0%
AGAGCCATATTTGGGTCGTC+CGG + contig141end:8389-8408 MsG0080047900.01.T01:CDS 50.0%
AGAGCCTTGGTACCACTTGT+TGG + contig141end:11184-11203 MsG0080047900.01.T01:intron 50.0%
ATCTGCAAGGTGGGTAGCTT+TGG - contig141end:8270-8289 None:intergenic 50.0%
ATGTGATTCACATGAGGCGG+AGG - contig141end:8219-8238 None:intergenic 50.0%
CACTCCTCCTCAATGAACGA+AGG + contig141end:10165-10184 MsG0080047900.01.T01:intron 50.0%
CAGATCTGAGTGTCTCGGTT+GGG - contig141end:8133-8152 None:intergenic 50.0%
CCGAACCAACCCAAACCATA+TGG + contig141end:10607-10626 MsG0080047900.01.T01:intron 50.0%
CCGTCCACAACAACCATGAA+AGG + contig141end:8087-8106 MsG0080047900.01.T01:CDS 50.0%
CCGTTCTGTCAAGCTTCTGA+TGG + contig141end:12571-12590 MsG0080047900.01.T01:CDS 50.0%
CGGATACGATGGGGTTTCAT+AGG - contig141end:12329-12348 None:intergenic 50.0%
CTTCGTTCATTGAGGAGGAG+TGG - contig141end:10167-10186 None:intergenic 50.0%
GAAGGCCACTATTACAGAGG+GGG - contig141end:7930-7949 None:intergenic 50.0%
GAGCCTTGGTACCACTTGTT+GGG + contig141end:11185-11204 MsG0080047900.01.T01:intron 50.0%
GAGGCCTTTCATGGTTGTTG+TGG - contig141end:8094-8113 None:intergenic 50.0%
GGAAGGCCACTATTACAGAG+GGG - contig141end:7931-7950 None:intergenic 50.0%
GGCGCATCACTTCCTTCAAT+CGG + contig141end:12227-12246 MsG0080047900.01.T01:intron 50.0%
GGGAAGGCCACTATTACAGA+GGG - contig141end:7932-7951 None:intergenic 50.0%
GGGCGTCAAAAGCAAAAGAG+AGG - contig141end:8113-8132 None:intergenic 50.0%
GGTGACTCACATTTGAGGGA+GGG - contig141end:11388-11407 None:intergenic 50.0%
GTCGATGAGGATACTGGAAG+TGG - contig141end:9153-9172 None:intergenic 50.0%
GTGGGGTGACTCACATTTGA+GGG - contig141end:11392-11411 None:intergenic 50.0%
GTGTGAACGTACACACTTGC+GGG - contig141end:11108-11127 None:intergenic 50.0%
TCAACGGGCCCAAATGCTTA+AGG + contig141end:10933-10952 MsG0080047900.01.T01:intron 50.0%
TCATGGTTGTTGTGGACGGA+AGG - contig141end:8086-8105 None:intergenic 50.0%
TCCCACCTCCATCTAGATCT+AGG + contig141end:7994-8013 MsG0080047900.01.T01:CDS 50.0%
TCCCTAAACTCCCCAACAAG+TGG - contig141end:11199-11218 None:intergenic 50.0%
TCTAGATGGAGGTGGGAGTA+TGG - contig141end:7991-8010 None:intergenic 50.0%
TCTCCTATACCTCGATGGAG+CGG + contig141end:8238-8257 MsG0080047900.01.T01:CDS 50.0%
TGTGAACGTACACACTTGCG+GGG - contig141end:11107-11126 None:intergenic 50.0%
TGTGGGGTGACTCACATTTG+AGG - contig141end:11393-11412 None:intergenic 50.0%
! ACTGTGCAAGCTTTATCCGG+AGG - contig141end:8348-8367 None:intergenic 50.0%
! AGCCTTGGTACCACTTGTTG+GGG + contig141end:11186-11205 MsG0080047900.01.T01:intron 50.0%
! GCTTTAAGCAGCAAGAGGTG+TGG - contig141end:8048-8067 None:intergenic 50.0%
! GGGGGGTAAATTTTGCCTTG+TGG - contig141end:9408-9427 None:intergenic 50.0%
! TAAGGTGTTTGTGGTGCGGT+TGG - contig141end:10725-10744 None:intergenic 50.0%
! TTAAGCAGCAAGAGGTGTGG+TGG - contig141end:8045-8064 None:intergenic 50.0%
!! GTGTCGTTCGTAGTCTTGTG+CGG - contig141end:10004-10023 None:intergenic 50.0%
!! TCTGGGCTTTAAGCAGCAAG+AGG - contig141end:8053-8072 None:intergenic 50.0%
AAACGGCGGGAGTGAGAAGA+AGG + contig141end:12148-12167 MsG0080047900.01.T01:intron 55.0%
AACAACCCTCCATTGCGGAG+GGG - contig141end:7906-7925 None:intergenic 55.0%
AACGGCGGGAGTGAGAAGAA+GGG + contig141end:12149-12168 MsG0080047900.01.T01:intron 55.0%
ACGGCGAATATCTTCCGGCT+CGG - contig141end:12418-12437 None:intergenic 55.0%
AGCGGGAGTGGATCATGTGT+TGG - contig141end:11146-11165 None:intergenic 55.0%
AGGCGTCAACGATGCAGATC+TGG - contig141end:9895-9914 None:intergenic 55.0%
CACCATGATCTCCCTCTCGT+TGG + contig141end:8176-8195 MsG0080047900.01.T01:CDS 55.0%
CTCCAACGAGAGGGAGATCA+TGG - contig141end:8181-8200 None:intergenic 55.0%
CTCCCCAACAAGTGGTACCA+AGG - contig141end:11191-11210 None:intergenic 55.0%
GAAACAACCCTCCATTGCGG+AGG - contig141end:7908-7927 None:intergenic 55.0%
GAAACCCCATCGTATCCGCA+TGG + contig141end:12331-12350 MsG0080047900.01.T01:intron 55.0%
GCAGATCTGAGTGTCTCGGT+TGG - contig141end:8134-8153 None:intergenic 55.0%
GGAGTTGCGGGAGAATCAAC+GGG + contig141end:10918-10937 MsG0080047900.01.T01:intron 55.0%
GGGAGTTGCGGGAGAATCAA+CGG + contig141end:10917-10936 MsG0080047900.01.T01:intron 55.0%
GGGGAAACAACCCTCCATTG+CGG - contig141end:7911-7930 None:intergenic 55.0%
GGGGAAGGCCACTATTACAG+AGG - contig141end:7933-7952 None:intergenic 55.0%
GGGGCAGATTGTTGCGTTTC+AGG - contig141end:11088-11107 None:intergenic 55.0%
GGGTGACTCACATTTGAGGG+AGG - contig141end:11389-11408 None:intergenic 55.0%
GTGTGCCATGCGGATACGAT+GGG - contig141end:12339-12358 None:intergenic 55.0%
TGTGCCATGCGGATACGATG+GGG - contig141end:12338-12357 None:intergenic 55.0%
TGTGTGCCATGCGGATACGA+TGG - contig141end:12340-12359 None:intergenic 55.0%
TTGCCGCTCCATCGAGGTAT+AGG - contig141end:8244-8263 None:intergenic 55.0%
! ACCAAGGCTCTAGTCCGACT+TGG - contig141end:11175-11194 None:intergenic 55.0%
! ACCAAGTCGGACTAGAGCCT+TGG + contig141end:11171-11190 MsG0080047900.01.T01:intron 55.0%
! AGATGGAGGTGGGAGTATGG+TGG - contig141end:7988-8007 None:intergenic 55.0%
! ATTTCTGATGGGTAGCGGCG+AGG + contig141end:12184-12203 MsG0080047900.01.T01:intron 55.0%
!! AGGCTCTAGTCCGACTTGGT+AGG - contig141end:11171-11190 None:intergenic 55.0%
!! GCGGTTTGGTTTGACTCGGT+TGG - contig141end:9568-9587 None:intergenic 55.0%
!! GCTCTAGTCCGACTTGGTAG+GGG - contig141end:11169-11188 None:intergenic 55.0%
!! GGCTCTAGTCCGACTTGGTA+GGG - contig141end:11170-11189 None:intergenic 55.0%
!! TGGTGGTGGAGGTGGTGATA+TGG - contig141end:8028-8047 None:intergenic 55.0%
ACAACCCTCCATTGCGGAGG+GGG - contig141end:7905-7924 None:intergenic 60.0%
ATGTCCCCCTCCGCAATGGA+GGG + contig141end:7898-7917 MsG0080047900.01.T01:CDS 60.0%
GAGGTGGCAGTAGCTGAGAG+CGG + contig141end:12203-12222 MsG0080047900.01.T01:intron 60.0%
GCTTTATCCGGAGGCTTCCG+CGG - contig141end:8339-8358 None:intergenic 60.0%
TGGAGGACGCTCCAACGAGA+GGG - contig141end:8190-8209 None:intergenic 60.0%
TGGTTGTTGCCGCTCCATCG+AGG - contig141end:8250-8269 None:intergenic 60.0%
TTCACATGAGGCGGAGGCTC+TGG - contig141end:8213-8232 None:intergenic 60.0%
! AGCAGCAAGAGGTGTGGTGG+TGG - contig141end:8042-8061 None:intergenic 60.0%
!! AAGAGGTGTGGTGGTGGAGG+TGG - contig141end:8036-8055 None:intergenic 60.0%
!! AGCAAGAGGTGTGGTGGTGG+AGG - contig141end:8039-8058 None:intergenic 60.0%
!! AGTCCGACTTGGTAGGGGAG+CGG - contig141end:11164-11183 None:intergenic 60.0%
!! GCGAATATCTTCCGGCTCGG+CGG - contig141end:12415-12434 None:intergenic 60.0%
AAGACCTCCGCGGAAGCCTC+CGG + contig141end:8329-8348 MsG0080047900.01.T01:CDS 65.0%
ACCCATGGAGGTTTCGGCGC+CGG - contig141end:8411-8430 None:intergenic 65.0%
ACTTGGTAGGGGAGCGGGAG+TGG - contig141end:11158-11177 None:intergenic 65.0%
CTCCCGCTCCCCTACCAAGT+CGG + contig141end:11158-11177 MsG0080047900.01.T01:intron 65.0%
GCTTCCGCGGAGGTCTTTCG+AGG - contig141end:8326-8345 None:intergenic 65.0%
GTGGAGGACGCTCCAACGAG+AGG - contig141end:8191-8210 None:intergenic 65.0%
GTGGCAGTAGCTGAGAGCGG+TGG + contig141end:12206-12225 MsG0080047900.01.T01:intron 65.0%
TCGGCCTCGAAAGACCTCCG+CGG + contig141end:8319-8338 MsG0080047900.01.T01:CDS 65.0%
TTATCCGGAGGCTTCCGCGG+AGG - contig141end:8336-8355 None:intergenic 65.0%
! ACATGAGGCGGAGGCTCTGG+TGG - contig141end:8210-8229 None:intergenic 65.0%
! ACGTCCTTTTGCCGCCGAGC+CGG + contig141end:12401-12420 MsG0080047900.01.T01:intron 65.0%
! GGCGCCGGACGACCCAAATA+TGG - contig141end:8396-8415 None:intergenic 65.0%
! TCCGGCGCCGAAACCTCCAT+GGG + contig141end:8407-8426 MsG0080047900.01.T01:CDS 65.0%
! TCTGATGGGTAGCGGCGAGG+TGG + contig141end:12187-12206 MsG0080047900.01.T01:intron 65.0%
!! GTCCGACTTGGTAGGGGAGC+GGG - contig141end:11163-11182 None:intergenic 65.0%
!! TCTTCCGGCTCGGCGGCAAA+AGG - contig141end:12408-12427 None:intergenic 65.0%
! GTCCGGCGCCGAAACCTCCA+TGG + contig141end:8406-8425 MsG0080047900.01.T01:CDS 70.0%
! TGAGGCGGAGGCTCTGGTGG+AGG - contig141end:8207-8226 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
contig141end gene 7898 12969 7898 ID=MsG0080047900.01;Name=MsG0080047900.01
contig141end mRNA 7898 12969 7898 ID=MsG0080047900.01.T01;Parent=MsG0080047900.01;Name=MsG0080047900.01.T01;_AED=0.47;_eAED=0.87;_QI=0|0|0|1|1|1|3|0|256
contig141end exon 7898 8428 7898 ID=MsG0080047900.01.T01:exon:15853;Parent=MsG0080047900.01.T01
contig141end exon 12554 12750 12554 ID=MsG0080047900.01.T01:exon:15852;Parent=MsG0080047900.01.T01
contig141end exon 12927 12969 12927 ID=MsG0080047900.01.T01:exon:15851;Parent=MsG0080047900.01.T01
contig141end CDS 7898 8428 7898 ID=MsG0080047900.01.T01:cds;Parent=MsG0080047900.01.T01
contig141end CDS 12554 12750 12554 ID=MsG0080047900.01.T01:cds;Parent=MsG0080047900.01.T01
contig141end CDS 12927 12969 12927 ID=MsG0080047900.01.T01:cds;Parent=MsG0080047900.01.T01
Gene Sequence

>MsG0080047900.01.T01

ATGTCCCCCTCCGCAATGGAGGGTTGTTTCCCCCTCTGTAATAGTGGCCTTCCCCTCCCCTTTGAATGTTCCTTTTGTTACATGCTACCACCATACTCCCACCTCCATCTAGATCTAGGTTATGCTACCATATCACCACCTCCACCACCACACCTCTTGCTGCTTAAAGCCCAGATCTACAAGATCCTTCCGTCCACAACAACCATGAAAGGCCTCTCTTTTGCTTTTGACGCCCAACCGAGACACTCAGATCTGCCCTTTGAGCTACCACTCCAAAACACCATGATCTCCCTCTCGTTGGAGCGTCCTCCACCAGAGCCTCCGCCTCATGTGAATCACATCTCCTATACCTCGATGGAGCGGCAACAACCAAAGCTACCCACCTTGCAGATAACTGAGTACGACCTATCCATTTTGAATCTCGGCCTCGAAAGACCTCCGCGGAAGCCTCCGGATAAAGCTTGCACAGTTTTTAAGGTGGTCCGTAAACTAGAGCCATATTTGGGTCGTCCGGCGCCGAAACCTCCATGGTTTTCGATGGACTTTTTCCGTTCTGTCAAGCTTCTGATGGTGGATCTATTGGTTGTGCTGCTAGGCTTAATCGGTGATGCTGATATTGCTATTAATTGGGCTGGTGGATTGCATCATGCTAAGAAAGCTGAAGCTCTGGATTTTGCTATGTTAATGACATTGTTCTTGGGATTCTCGAGCTTCTCAAAGCTCATAGGATTTGCACTTAAAGACATATGTCACAGCGTGAGTCGTGTGTGA
Protein sequence

>MsG0080047900.01.T01

MSPSAMEGCFPLCNSGLPLPFECSFCYMLPPYSHLHLDLGYATISPPPPPHLLLLKAQIYKILPSTTTMKGLSFAFDAQPRHSDLPFELPLQNTMISLSLERPPPEPPPHVNHISYTSMERQQPKLPTLQITEYDLSILNLGLERPPRKPPDKACTVFKVVRKLEPYLGRPAPKPPWFSMDFFRSVKLLMVDLLVVLLGLIGDADIAINWAGGLHHAKKAEALDFAMLMTLFLGFSSFSKLIGFALKDICHSVSRV*