AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080047969.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080047969.01.T01 MTR_1g033830 68.966 174 34 2 1 174 1 154 1.06e-62 193
MsG0080047969.01.T01 MTR_1g033830 68.966 174 34 2 1 174 1 154 7.03e-62 194
MsG0080047969.01.T01 MTR_4g094212 45.455 154 64 4 21 174 13 146 3.80e-32 117
MsG0080047969.01.T01 MTR_2g022880 42.063 126 53 3 43 168 30 135 2.22e-20 85.5
MsG0080047969.01.T01 MTR_2g022880 42.063 126 53 3 43 168 30 135 3.20e-20 85.5
MsG0080047969.01.T01 MTR_4g131930 42.857 147 64 3 22 168 3 129 5.07e-19 82.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080047969.01.T01 AT1G14530 53.459 159 54 2 16 174 12 150 2.87e-49 160
MsG0080047969.01.T01 AT2G02180 53.165 158 54 2 17 174 23 160 9.09e-49 160
MsG0080047969.01.T01 AT1G14530 53.459 159 54 2 16 174 12 150 1.10e-48 160
MsG0080047969.01.T01 AT4G21790 38.690 168 75 5 7 174 9 148 2.01e-30 112

Find 65 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGCACTTCTGGTCTTGTTC+TGG 0.161658 contig154end:+12966 MsG0080047969.01.T01:CDS
CCCATCCTATTCTCAATCTT+AGG 0.205759 contig154end:+11505 MsG0080047969.01.T01:CDS
CTTTACAACATATGCACTTC+TGG 0.271976 contig154end:+12955 MsG0080047969.01.T01:CDS
TGGGTAGTCCAACCATATTC+TGG 0.305600 contig154end:-11664 MsG0080047969.01.T01:intergenic
CAATTGAGAGTTCCAGAATA+TGG 0.308572 contig154end:+11652 MsG0080047969.01.T01:CDS
TGTTGTGGTTTATGCTGTTC+AGG 0.311273 contig154end:+13171 MsG0080047969.01.T01:CDS
TGCACTTCTGGTCTTGTTCT+GGG 0.328875 contig154end:+12967 MsG0080047969.01.T01:CDS
TACACCCTCGCCGGCCTTTA+CGG 0.339761 contig154end:+11453 MsG0080047969.01.T01:CDS
CCATCCTATTCTCAATCTTA+GGG 0.348500 contig154end:+11506 MsG0080047969.01.T01:CDS
GGGACATTAGAGGGAAAGTT+GGG 0.377279 contig154end:+12379 MsG0080047969.01.T01:CDS
CGTCGTTTCCGCCATAGCTT+TGG 0.423002 contig154end:+11476 MsG0080047969.01.T01:CDS
ATTAGACATGGGGACATTAG+AGG 0.424800 contig154end:+12369 MsG0080047969.01.T01:CDS
ACCTCGCCGTCGTCGGTGGC+AGG 0.438475 contig154end:+11333 MsG0080047969.01.T01:CDS
GAGAAAATGAAACACCTTCT+GGG 0.439545 contig154end:-11683 MsG0080047969.01.T01:intergenic
GAACGACATCGACGATTCTC+CGG 0.444368 contig154end:+11410 MsG0080047969.01.T01:CDS
AAGATGCGGTCTTGCCAAAC+CGG 0.453837 contig154end:-11429 MsG0080047969.01.T01:intergenic
GTTCCACCAGGTTGAGGAAT+CGG 0.468815 contig154end:-11391 MsG0080047969.01.T01:intergenic
ACATCGACGATTCTCCGGTT+TGG 0.476060 contig154end:+11415 MsG0080047969.01.T01:CDS
CGACGACGGCGAGGTGTTGT+TGG 0.480978 contig154end:-11325 MsG0080047969.01.T01:intergenic
GATCCGTGGTTGACAACATT+GGG 0.484485 contig154end:+12327 MsG0080047969.01.T01:CDS
CTGGGCTGAGATTATATACC+AGG 0.489969 contig154end:+12985 MsG0080047969.01.T01:CDS
AACATTAATGTATAGAAACT+TGG 0.492736 contig154end:-13152 MsG0080047969.01.T01:intergenic
GGGGACATTAGAGGGAAAGT+TGG 0.501418 contig154end:+12378 MsG0080047969.01.T01:CDS
GGACATTAGAGGGAAAGTTG+GGG 0.505900 contig154end:+12380 MsG0080047969.01.T01:CDS
GCACATCAAGTAAGATATGT+TGG 0.511535 contig154end:-12919 MsG0080047969.01.T01:intergenic
GTTTCTATACATTAATGTTG+TGG 0.511736 contig154end:+13156 MsG0080047969.01.T01:CDS
AGAACCCTAAGATTGAGAAT+AGG 0.514197 contig154end:-11510 MsG0080047969.01.T01:intergenic
TGGCGGAAACGACGCCGTAA+AGG 0.516515 contig154end:-11467 MsG0080047969.01.T01:intergenic
TGAGAGTTCCAGAATATGGT+TGG 0.518623 contig154end:+11656 MsG0080047969.01.T01:CDS
ATCGTCGATGTCGTTCCACC+AGG 0.520262 contig154end:-11403 MsG0080047969.01.T01:intergenic
GGAAACGACGCCGTAAAGGC+CGG 0.530370 contig154end:-11463 MsG0080047969.01.T01:intergenic
CCCTAAGATTGAGAATAGGA+TGG 0.534752 contig154end:-11506 MsG0080047969.01.T01:intergenic
GCCGTCGTCGGTGGCAGGCG+CGG 0.553220 contig154end:+11338 MsG0080047969.01.T01:CDS
GCACGTGCTGTATCCACTGA+TGG 0.558795 contig154end:+13122 MsG0080047969.01.T01:CDS
ATGTTGTCAACCACGGATCA+CGG 0.558935 contig154end:-12323 MsG0080047969.01.T01:intergenic
TGATCCGTGGTTGACAACAT+TGG 0.561893 contig154end:+12326 MsG0080047969.01.T01:CDS
GATGTCGTTCCACCAGGTTG+AGG 0.564379 contig154end:-11397 MsG0080047969.01.T01:intergenic
GGCAGGCGCGGTGGTGAACG+CGG 0.564721 contig154end:+11350 MsG0080047969.01.T01:CDS
TTAGACATGGGGACATTAGA+GGG 0.577001 contig154end:+12370 MsG0080047969.01.T01:CDS
CCTAAGATTGAGAATAGGAT+GGG 0.577139 contig154end:-11505 MsG0080047969.01.T01:intergenic
ATGGGAAGGTACCAAAGCTA+TGG 0.578903 contig154end:-11487 MsG0080047969.01.T01:intergenic
CGACGCCGTAAAGGCCGGCG+AGG 0.579591 contig154end:-11458 MsG0080047969.01.T01:intergenic
GACATTAGAGGGAAAGTTGG+GGG 0.579817 contig154end:+12381 MsG0080047969.01.T01:CDS
ACCGCGCCTGCCACCGACGA+CGG 0.584430 contig154end:-11339 MsG0080047969.01.T01:intergenic
GACATGATATAATTAGACAT+GGG 0.585372 contig154end:+12358 MsG0080047969.01.T01:CDS
AACTCACCGATTCCTCAACC+TGG 0.591877 contig154end:+11385 MsG0080047969.01.T01:CDS
CAACAACACCTCGCCGTCGT+CGG 0.607297 contig154end:+11326 MsG0080047969.01.T01:CDS
CAACACCTCGCCGTCGTCGG+TGG 0.609458 contig154end:+11329 MsG0080047969.01.T01:CDS
GACGCCGTAAAGGCCGGCGA+GGG 0.609478 contig154end:-11457 MsG0080047969.01.T01:intergenic
ACTTGGCTTCAGTCCATCAG+TGG 0.611275 contig154end:-13135 MsG0080047969.01.T01:intergenic
AGATTGAGAATAGGATGGGA+AGG 0.613416 contig154end:-11501 MsG0080047969.01.T01:intergenic
GTTGTAAAGAAAGCAAGACT+TGG 0.617097 contig154end:-12941 MsG0080047969.01.T01:intergenic
GTCGTCGGTGGCAGGCGCGG+TGG 0.617258 contig154end:+11341 MsG0080047969.01.T01:CDS
CGCATCTTCTACACCCTCGC+CGG 0.632929 contig154end:+11444 MsG0080047969.01.T01:CDS
CCACGGATCACGGAAAATAG+CGG 0.641271 contig154end:-12313 MsG0080047969.01.T01:intergenic
AGACATGATATAATTAGACA+TGG 0.644401 contig154end:+12357 MsG0080047969.01.T01:CDS
GGAAGGTACCAAAGCTATGG+CGG 0.644462 contig154end:-11484 MsG0080047969.01.T01:intergenic
GCCTGCCACCGACGACGGCG+AGG 0.649888 contig154end:-11334 MsG0080047969.01.T01:intergenic
AGGCGCGGTGGTGAACGCGG+TGG 0.650350 contig154end:+11353 MsG0080047969.01.T01:CDS
CGGCGAGGGTGTAGAAGATG+CGG 0.656168 contig154end:-11443 MsG0080047969.01.T01:intergenic
ATATGGTTGGACTACCCAGA+AGG 0.660843 contig154end:+11669 MsG0080047969.01.T01:CDS
TTACCCAATGTTGTCAACCA+CGG 0.685132 contig154end:-12330 MsG0080047969.01.T01:intergenic
ACATGATATAATTAGACATG+GGG 0.685839 contig154end:+12359 MsG0080047969.01.T01:CDS
TCACCGATTCCTCAACCTGG+TGG 0.693137 contig154end:+11388 MsG0080047969.01.T01:CDS
GCTGTAGCACTGTTACATAG+CGG 0.758200 contig154end:+12278 MsG0080047969.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAATATTTTCCAATTTA+GGG + contig154end:11571-11590 MsG0080047969.01.T01:intron 10.0%
!!! TTTTAAATATTTTCCAATTT+AGG + contig154end:11570-11589 MsG0080047969.01.T01:intron 10.0%
!! TGATATATGATGAAATATTA+TGG + contig154end:12592-12611 MsG0080047969.01.T01:intron 15.0%
!!! TTGTTGTATATGATTTTATT+AGG + contig154end:12666-12685 MsG0080047969.01.T01:intron 15.0%
!! AACATTAATGTATAGAAACT+TGG - contig154end:13155-13174 MsG0080047969.01.T01:intergenic 20.0%
!! TAGTAAATAAAACCCTAAAT+TGG - contig154end:11586-11605 MsG0080047969.01.T01:intergenic 20.0%
!! TGATGATTACAATTGATTAA+CGG - contig154end:12728-12747 MsG0080047969.01.T01:intergenic 20.0%
!!! ATTAGTGATATGTAAACTTT+TGG + contig154end:11810-11829 MsG0080047969.01.T01:intron 20.0%
!!! ATTCTTATTTGTAAAGAACA+GGG + contig154end:12836-12855 MsG0080047969.01.T01:intron 20.0%
!!! TATTCTTATTTGTAAAGAAC+AGG + contig154end:12835-12854 MsG0080047969.01.T01:intron 20.0%
! AAAATTTCCTTAAGCTTATG+CGG - contig154end:12031-12050 MsG0080047969.01.T01:intergenic 25.0%
! ACATGATATAATTAGACATG+GGG + contig154end:12359-12378 MsG0080047969.01.T01:CDS 25.0%
! AGACATGATATAATTAGACA+TGG + contig154end:12357-12376 MsG0080047969.01.T01:CDS 25.0%
! GACATGATATAATTAGACAT+GGG + contig154end:12358-12377 MsG0080047969.01.T01:CDS 25.0%
! GTTTCTATACATTAATGTTG+TGG + contig154end:13156-13175 MsG0080047969.01.T01:CDS 25.0%
!! AAGGAGAGTATATCAAATTA+AGG + contig154end:12476-12495 MsG0080047969.01.T01:intron 25.0%
!! AGGAGAGTATATCAAATTAA+GGG + contig154end:12477-12496 MsG0080047969.01.T01:intron 25.0%
!! TACCATATTTTCTACAAAAG+TGG - contig154end:12409-12428 MsG0080047969.01.T01:intergenic 25.0%
!! TGTTTCATTTTCTCATTTTG+TGG + contig154end:11692-11711 MsG0080047969.01.T01:intron 25.0%
!!! GTTTAGTTTTCATCTTCTTT+CGG + contig154end:11847-11866 MsG0080047969.01.T01:intron 25.0%
!!! TACCACTTTTGTAGAAAATA+TGG + contig154end:12404-12423 MsG0080047969.01.T01:intron 25.0%
!!! TTTTGTAGTTTGGTTTTGAT+GGG + contig154end:13065-13084 MsG0080047969.01.T01:intron 25.0%
AATATGGTAGAAACATAGCT+TGG + contig154end:12420-12439 MsG0080047969.01.T01:intron 30.0%
AGATCTCAAGATTAATGAGT+TGG + contig154end:12560-12579 MsG0080047969.01.T01:intron 30.0%
AGCATATCACAAAACATTAG+CGG - contig154end:12219-12238 MsG0080047969.01.T01:intergenic 30.0%
ATATGGTAGAAACATAGCTT+GGG + contig154end:12421-12440 MsG0080047969.01.T01:intron 30.0%
GATTATATACCAGGTAAGTT+TGG + contig154end:12994-13013 MsG0080047969.01.T01:intron 30.0%
GTAAAGAACAGGGTTTAATA+TGG + contig154end:12846-12865 MsG0080047969.01.T01:intron 30.0%
TAGTACAATGTGTTGTCAAA+TGG + contig154end:12242-12261 MsG0080047969.01.T01:intron 30.0%
TATATCACATAAAACCCCAT+AGG - contig154end:12002-12021 MsG0080047969.01.T01:intergenic 30.0%
TTATCGTAGAACCTTAAGAT+GGG + contig154end:12050-12069 MsG0080047969.01.T01:intron 30.0%
TTTATCGTAGAACCTTAAGA+TGG + contig154end:12049-12068 MsG0080047969.01.T01:intron 30.0%
! TCTGTTTTCTTCTTTTGTCT+TGG + contig154end:13038-13057 MsG0080047969.01.T01:intron 30.0%
!!! GTTTTGTAGTTTGGTTTTGA+TGG + contig154end:13064-13083 MsG0080047969.01.T01:intron 30.0%
AAAATAACGAGCGAATGCAT+AGG - contig154end:11538-11557 MsG0080047968.01.T01:intergenic 35.0%
AAATAACGAGCGAATGCATA+GGG - contig154end:11537-11556 MsG0080047968.01.T01:intergenic 35.0%
AAGGGTAGTCAAATCACTAA+AGG + contig154end:12495-12514 MsG0080047969.01.T01:intron 35.0%
AGAACCCTAAGATTGAGAAT+AGG - contig154end:11513-11532 MsG0080047969.01.T01:intergenic 35.0%
CAATTGAGAGTTCCAGAATA+TGG + contig154end:11652-11671 MsG0080047969.01.T01:CDS 35.0%
CCATCCTATTCTCAATCTTA+GGG + contig154end:11506-11525 MsG0080047969.01.T01:CDS 35.0%
CCTAAGATTGAGAATAGGAT+GGG - contig154end:11508-11527 MsG0080047969.01.T01:intergenic 35.0%
CTCCTTACCACAAAATCTAT+AGG - contig154end:12462-12481 MsG0080047969.01.T01:intergenic 35.0%
CTTTACAACATATGCACTTC+TGG + contig154end:12955-12974 MsG0080047969.01.T01:CDS 35.0%
GAGAAAATGAAACACCTTCT+GGG - contig154end:11686-11705 MsG0080047969.01.T01:intergenic 35.0%
GCACATCAAGTAAGATATGT+TGG - contig154end:12922-12941 MsG0080047969.01.T01:intergenic 35.0%
GCATTTCTTTGAGTGTACTT+TGG + contig154end:11943-11962 MsG0080047969.01.T01:intron 35.0%
GTTGTAAAGAAAGCAAGACT+TGG - contig154end:12944-12963 MsG0080047969.01.T01:intergenic 35.0%
TACAATGTGTTGTCAAATGG+CGG + contig154end:12245-12264 MsG0080047969.01.T01:intron 35.0%
TATACCAGGTAAGTTTGGTA+TGG + contig154end:12999-13018 MsG0080047969.01.T01:intron 35.0%
TCCAAGCAACATTCTAATCT+CGG - contig154end:12139-12158 MsG0080047969.01.T01:intergenic 35.0%
TGAGAAAATGAAACACCTTC+TGG - contig154end:11687-11706 MsG0080047969.01.T01:intergenic 35.0%
TGCAAAAACATTTAGCACAG+AGG - contig154end:13101-13120 MsG0080047969.01.T01:intergenic 35.0%
! GACCTATAGATTTTGTGGTA+AGG + contig154end:12457-12476 MsG0080047969.01.T01:intron 35.0%
! GAGAAGACCTATAGATTTTG+TGG + contig154end:12452-12471 MsG0080047969.01.T01:intron 35.0%
!! AAAAGTACCGCATAAGCTTA+AGG + contig154end:12021-12040 MsG0080047969.01.T01:intron 35.0%
!! TCTGTGCTAAATGTTTTTGC+AGG + contig154end:13100-13119 MsG0080047969.01.T01:intron 35.0%
!! TCTTGGTGTGTTTTGTAGTT+TGG + contig154end:13055-13074 MsG0080047969.01.T01:intron 35.0%
!!! GTGTACTTTGGTTTTGAACT+CGG + contig154end:11955-11974 MsG0080047969.01.T01:intron 35.0%
!!! TGTACTTTGGTTTTGAACTC+GGG + contig154end:11956-11975 MsG0080047969.01.T01:intron 35.0%
AAGTCCGTGTTGTCAAATAG+CGG + contig154end:12167-12186 MsG0080047969.01.T01:intron 40.0%
AGATTGAGAATAGGATGGGA+AGG - contig154end:11504-11523 MsG0080047969.01.T01:intergenic 40.0%
ATAGCCGCTATTTGACAACA+CGG - contig154end:12174-12193 MsG0080047969.01.T01:intergenic 40.0%
ATTAGACATGGGGACATTAG+AGG + contig154end:12369-12388 MsG0080047969.01.T01:CDS 40.0%
CAGCTCCACTTAGTATGATA+AGG + contig154end:12635-12654 MsG0080047969.01.T01:intron 40.0%
CCACTTAGTATGATAAGGCT+TGG + contig154end:12640-12659 MsG0080047969.01.T01:intron 40.0%
CCCATCCTATTCTCAATCTT+AGG + contig154end:11505-11524 MsG0080047969.01.T01:CDS 40.0%
CCCTAAGATTGAGAATAGGA+TGG - contig154end:11509-11528 MsG0080047969.01.T01:intergenic 40.0%
CTTATCATACTAAGTGGAGC+TGG - contig154end:12637-12656 MsG0080047969.01.T01:intergenic 40.0%
TACTCCATACCAAACTTACC+TGG - contig154end:13006-13025 MsG0080047969.01.T01:intergenic 40.0%
TCTTCTTTCGGAATGTACAG+AGG + contig154end:11859-11878 MsG0080047969.01.T01:intron 40.0%
TGAGAGTTCCAGAATATGGT+TGG + contig154end:11656-11675 MsG0080047969.01.T01:CDS 40.0%
TGCTGTATGAGATAGAGTGT+TGG + contig154end:12076-12095 MsG0080047969.01.T01:intron 40.0%
TGTTGTGGTTTATGCTGTTC+AGG + contig154end:13171-13190 MsG0080047969.01.T01:CDS 40.0%
TTACCCAATGTTGTCAACCA+CGG - contig154end:12333-12352 MsG0080047969.01.T01:intergenic 40.0%
TTAGACATGGGGACATTAGA+GGG + contig154end:12370-12389 MsG0080047969.01.T01:CDS 40.0%
! CCAAGCCTTATCATACTAAG+TGG - contig154end:12643-12662 MsG0080047969.01.T01:intergenic 40.0%
! GCTGTATGAGATAGAGTGTT+GGG + contig154end:12077-12096 MsG0080047969.01.T01:intron 40.0%
! TAGAATGTTGCTTGGATGTG+TGG + contig154end:12143-12162 MsG0080047969.01.T01:intron 40.0%
! TCTCATTTTGTGGTGAATGC+AGG + contig154end:11702-11721 MsG0080047969.01.T01:intron 40.0%
!!! GTACTTTGGTTTTGAACTCG+GGG + contig154end:11957-11976 MsG0080047969.01.T01:intron 40.0%
ATACAGCATCGCCCATCTTA+AGG - contig154end:12064-12083 MsG0080047969.01.T01:intergenic 45.0%
ATATGGTTGGACTACCCAGA+AGG + contig154end:11669-11688 MsG0080047969.01.T01:CDS 45.0%
ATGTACAGAGGTTACAGCAG+AGG + contig154end:11871-11890 MsG0080047969.01.T01:intron 45.0%
ATGTTGTCAACCACGGATCA+CGG - contig154end:12326-12345 MsG0080047969.01.T01:intergenic 45.0%
CTGGGCTGAGATTATATACC+AGG + contig154end:12985-13004 MsG0080047969.01.T01:CDS 45.0%
GACATTAGAGGGAAAGTTGG+GGG + contig154end:12381-12400 MsG0080047969.01.T01:CDS 45.0%
GATCCGTGGTTGACAACATT+GGG + contig154end:12327-12346 MsG0080047969.01.T01:CDS 45.0%
GCCGAGATTAGAATGTTGCT+TGG + contig154end:12135-12154 MsG0080047969.01.T01:intron 45.0%
GCTGTAGCACTGTTACATAG+CGG + contig154end:12278-12297 MsG0080047969.01.T01:intron 45.0%
GGACATTAGAGGGAAAGTTG+GGG + contig154end:12380-12399 MsG0080047969.01.T01:CDS 45.0%
GGGACATTAGAGGGAAAGTT+GGG + contig154end:12379-12398 MsG0080047969.01.T01:CDS 45.0%
TGATCCGTGGTTGACAACAT+TGG + contig154end:12326-12345 MsG0080047969.01.T01:CDS 45.0%
TGGGTAGTCCAACCATATTC+TGG - contig154end:11667-11686 MsG0080047969.01.T01:intergenic 45.0%
!! ATGCACTTCTGGTCTTGTTC+TGG + contig154end:12966-12985 MsG0080047969.01.T01:CDS 45.0%
!! ATGGGAAGGTACCAAAGCTA+TGG - contig154end:11490-11509 MsG0080047969.01.T01:intergenic 45.0%
!! TGCACTTCTGGTCTTGTTCT+GGG + contig154end:12967-12986 MsG0080047969.01.T01:CDS 45.0%
AAGATGCGGTCTTGCCAAAC+CGG - contig154end:11432-11451 MsG0080047968.01.T01:intergenic 50.0%
ACATCGACGATTCTCCGGTT+TGG + contig154end:11415-11434 MsG0080047969.01.T01:CDS 50.0%
ACTAAGTGGAGCTGGCTACA+TGG - contig154end:12629-12648 MsG0080047969.01.T01:intergenic 50.0%
ACTTGGCTTCAGTCCATCAG+TGG - contig154end:13138-13157 MsG0080047969.01.T01:intergenic 50.0%
CCACGGATCACGGAAAATAG+CGG - contig154end:12316-12335 MsG0080047969.01.T01:intergenic 50.0%
GAACGACATCGACGATTCTC+CGG + contig154end:11410-11429 MsG0080047969.01.T01:CDS 50.0%
GGGGACATTAGAGGGAAAGT+TGG + contig154end:12378-12397 MsG0080047969.01.T01:CDS 50.0%
TGAAATGGAGGAGGGCCTAT+GGG + contig154end:11984-12003 MsG0080047969.01.T01:intron 50.0%
TGAACTCGGGGTGGTTGAAA+TGG + contig154end:11969-11988 MsG0080047969.01.T01:intron 50.0%
TTGAAATGGAGGAGGGCCTA+TGG + contig154end:11983-12002 MsG0080047969.01.T01:intron 50.0%
! GTTCCACCAGGTTGAGGAAT+CGG - contig154end:11394-11413 MsG0080047969.01.T01:intergenic 50.0%
!! AACTCACCGATTCCTCAACC+TGG + contig154end:11385-11404 MsG0080047969.01.T01:CDS 50.0%
!! GGAAGGTACCAAAGCTATGG+CGG - contig154end:11487-11506 MsG0080047969.01.T01:intergenic 50.0%
!!! CTTTGGTTTTGAACTCGGGG+TGG + contig154end:11960-11979 MsG0080047969.01.T01:intron 50.0%
ACTCGGGGTGGTTGAAATGG+AGG + contig154end:11972-11991 MsG0080047969.01.T01:intron 55.0%
ATCGTCGATGTCGTTCCACC+AGG - contig154end:11406-11425 MsG0080047969.01.T01:intergenic 55.0%
CGTCGTTTCCGCCATAGCTT+TGG + contig154end:11476-11495 MsG0080047969.01.T01:CDS 55.0%
GAAATGGAGGAGGGCCTATG+GGG + contig154end:11985-12004 MsG0080047969.01.T01:intron 55.0%
GATGTCGTTCCACCAGGTTG+AGG - contig154end:11400-11419 MsG0080047969.01.T01:intergenic 55.0%
GCACGTGCTGTATCCACTGA+TGG + contig154end:13122-13141 MsG0080047969.01.T01:CDS 55.0%
GGGGTGGTTGAAATGGAGGA+GGG + contig154end:11976-11995 MsG0080047969.01.T01:intron 55.0%
!! CCGCTATTTTCCGTGATCCG+TGG + contig154end:12313-12332 MsG0080047969.01.T01:CDS 55.0%
!! TCACCGATTCCTCAACCTGG+TGG + contig154end:11388-11407 MsG0080047969.01.T01:CDS 55.0%
CAACAACACCTCGCCGTCGT+CGG + contig154end:11326-11345 MsG0080047969.01.T01:CDS 60.0%
CGCATCTTCTACACCCTCGC+CGG + contig154end:11444-11463 MsG0080047969.01.T01:CDS 60.0%
CGGGGTGGTTGAAATGGAGG+AGG + contig154end:11975-11994 MsG0080047969.01.T01:intron 60.0%
GGAAACGACGCCGTAAAGGC+CGG - contig154end:11466-11485 MsG0080047969.01.T01:intergenic 60.0%
TACACCCTCGCCGGCCTTTA+CGG + contig154end:11453-11472 MsG0080047969.01.T01:CDS 60.0%
TGGCGGAAACGACGCCGTAA+AGG - contig154end:11470-11489 MsG0080047969.01.T01:intergenic 60.0%
! CGGCGAGGGTGTAGAAGATG+CGG - contig154end:11446-11465 MsG0080047969.01.T01:intergenic 60.0%
!! CGACGACGGCGAGGTGTTGT+TGG - contig154end:11328-11347 MsG0080047969.01.T01:intergenic 65.0%
CAACACCTCGCCGTCGTCGG+TGG + contig154end:11329-11348 MsG0080047969.01.T01:CDS 70.0%
GACGCCGTAAAGGCCGGCGA+GGG - contig154end:11460-11479 MsG0080047969.01.T01:intergenic 70.0%
ACCGCGCCTGCCACCGACGA+CGG - contig154end:11342-11361 MsG0080047969.01.T01:intergenic 75.0%
ACCTCGCCGTCGTCGGTGGC+AGG + contig154end:11333-11352 MsG0080047969.01.T01:CDS 75.0%
AGGCGCGGTGGTGAACGCGG+TGG + contig154end:11353-11372 MsG0080047969.01.T01:CDS 75.0%
CGACGCCGTAAAGGCCGGCG+AGG - contig154end:11461-11480 MsG0080047969.01.T01:intergenic 75.0%
GGCAGGCGCGGTGGTGAACG+CGG + contig154end:11350-11369 MsG0080047969.01.T01:CDS 75.0%
! GCCGTCGTCGGTGGCAGGCG+CGG + contig154end:11338-11357 MsG0080047969.01.T01:CDS 80.0%
! GCCTGCCACCGACGACGGCG+AGG - contig154end:11337-11356 MsG0080047969.01.T01:intergenic 80.0%
! GTCGTCGGTGGCAGGCGCGG+TGG + contig154end:11341-11360 MsG0080047969.01.T01:CDS 80.0%
Chromosome Type Strat End Strand Name
contig154end gene 11321 13196 11321 ID=MsG0080047969.01;Name=MsG0080047969.01
contig154end mRNA 11321 13196 11321 ID=MsG0080047969.01.T01;Parent=MsG0080047969.01;Name=MsG0080047969.01.T01;_AED=0.58;_eAED=0.59;_QI=0|0.25|0.2|0.8|1|1|5|0|182
contig154end exon 11321 11527 11321 ID=MsG0080047969.01.T01:exon:12282;Parent=MsG0080047969.01.T01
contig154end exon 11634 11690 11634 ID=MsG0080047969.01.T01:exon:12281;Parent=MsG0080047969.01.T01
contig154end exon 12285 12402 12285 ID=MsG0080047969.01.T01:exon:12280;Parent=MsG0080047969.01.T01
contig154end exon 12915 13006 12915 ID=MsG0080047969.01.T01:exon:12279;Parent=MsG0080047969.01.T01
contig154end exon 13122 13196 13122 ID=MsG0080047969.01.T01:exon:12278;Parent=MsG0080047969.01.T01
contig154end CDS 11321 11527 11321 ID=MsG0080047969.01.T01:cds;Parent=MsG0080047969.01.T01
contig154end CDS 11634 11690 11634 ID=MsG0080047969.01.T01:cds;Parent=MsG0080047969.01.T01
contig154end CDS 12285 12402 12285 ID=MsG0080047969.01.T01:cds;Parent=MsG0080047969.01.T01
contig154end CDS 12915 13006 12915 ID=MsG0080047969.01.T01:cds;Parent=MsG0080047969.01.T01
contig154end CDS 13122 13196 13122 ID=MsG0080047969.01.T01:cds;Parent=MsG0080047969.01.T01
Gene Sequence

>MsG0080047969.01.T01

ATGACCAACAACACCTCGCCGTCGTCGGTGGCAGGCGCGGTGGTGAACGCGGTGGCAGCAATTGAACTCACCGATTCCTCAACCTGGTGGAACGACATCGACGATTCTCCGGTTTGGCAAGACCGCATCTTCTACACCCTCGCCGGCCTTTACGGCGTCGTTTCCGCCATAGCTTTGGTACCTTCCCATCCTATTCTCAATCTTAGGATTCAACTTGTTAGAATACAATTGAGAGTTCCAGAATATGGTTGGACTACCCAGAAGCACTGTTACATAGCGGAATTTGAACAAACCGCTATTTTCCGTGATCCGTGGTTGACAACATTGGGTAAGACTAGACATGATATAATTAGACATGGGGACATTAGAGGGAAAGTTGGGGATTGCCAACATATCTTACTTGATGTGCCAAGTCTTGCTTTCTTTACAACATATGCACTTCTGGTCTTGTTCTGGGCTGAGATTATATACCAGGCACGTGCTGTATCCACTGATGGACTGAAGCCAAGTTTCTATACATTAATGTTGTGGTTTATGCTGTTCAGGTGA
Protein sequence

>MsG0080047969.01.T01

MTNNTSPSSVAGAVVNAVAAIELTDSSTWWNDIDDSPVWQDRIFYTLAGLYGVVSAIALVPSHPILNLRIQLVRIQLRVPEYGWTTQKHCYIAEFEQTAIFRDPWLTTLGKTRHDIIRHGDIRGKVGDCQHILLDVPSLAFFTTYALLVLFWAEIIYQARAVSTDGLKPSFYTLMLWFMLFR*