Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080047990.01.T01 | RHN80760.1 | 97.175 | 354 | 10 | 0 | 1 | 354 | 1 | 354 | 0 | 716 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080047990.01.T01 | Q5KTS5 | 78.571 | 294 | 59 | 3 | 62 | 354 | 1 | 291 | 1.28E-177 | 497 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080047990.01.T01 | A0A396JR57 | 97.175 | 354 | 10 | 0 | 1 | 354 | 1 | 354 | 0.0 | 716 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0780041397.01 | MsG0080047990.01 | PPI |
| MsG0080047990.01 | MsG0680032061.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080047990.01.T01 | MTR_1g082760 | 98.976 | 293 | 3 | 0 | 62 | 354 | 1 | 293 | 0.0 | 608 |
| MsG0080047990.01.T01 | MTR_7g113650 | 86.301 | 292 | 40 | 0 | 62 | 353 | 1 | 292 | 0.0 | 543 |
| MsG0080047990.01.T01 | MTR_4g131740 | 71.088 | 294 | 84 | 1 | 62 | 354 | 1 | 294 | 1.83e-157 | 443 |
| MsG0080047990.01.T01 | MTR_6g023590 | 32.075 | 265 | 163 | 7 | 93 | 349 | 5 | 260 | 2.22e-30 | 117 |
| MsG0080047990.01.T01 | MTR_6g023990 | 32.061 | 262 | 153 | 8 | 100 | 349 | 13 | 261 | 9.05e-30 | 115 |
| MsG0080047990.01.T01 | MTR_6g023610 | 33.829 | 269 | 143 | 9 | 100 | 351 | 12 | 262 | 1.65e-29 | 114 |
| MsG0080047990.01.T01 | MTR_6g023600 | 33.829 | 269 | 153 | 8 | 93 | 349 | 5 | 260 | 6.34e-29 | 113 |
| MsG0080047990.01.T01 | MTR_6g023950 | 33.208 | 265 | 160 | 7 | 93 | 349 | 5 | 260 | 1.44e-28 | 112 |
| MsG0080047990.01.T01 | MTR_3g085740 | 30.469 | 256 | 166 | 6 | 100 | 352 | 74 | 320 | 8.37e-28 | 111 |
| MsG0080047990.01.T01 | MTR_4g052320 | 34.231 | 260 | 155 | 7 | 100 | 353 | 7 | 256 | 9.96e-28 | 109 |
| MsG0080047990.01.T01 | MTR_4g052300 | 33.463 | 257 | 157 | 6 | 100 | 352 | 7 | 253 | 3.77e-27 | 108 |
| MsG0080047990.01.T01 | MTR_7g063270 | 32.031 | 256 | 158 | 7 | 101 | 349 | 16 | 262 | 7.18e-27 | 107 |
| MsG0080047990.01.T01 | MTR_6g023910 | 32.836 | 268 | 149 | 10 | 96 | 348 | 8 | 259 | 2.04e-26 | 106 |
| MsG0080047990.01.T01 | MTR_4g132850 | 28.854 | 253 | 166 | 6 | 100 | 349 | 6 | 247 | 3.09e-25 | 102 |
| MsG0080047990.01.T01 | MTR_4g052350 | 32.685 | 257 | 159 | 6 | 100 | 352 | 13 | 259 | 3.31e-25 | 103 |
| MsG0080047990.01.T01 | MTR_3g020670 | 31.203 | 266 | 161 | 6 | 97 | 349 | 12 | 268 | 3.49e-24 | 100 |
| MsG0080047990.01.T01 | MTR_6g023600 | 33.086 | 269 | 149 | 9 | 93 | 349 | 5 | 254 | 4.16e-24 | 99.8 |
| MsG0080047990.01.T01 | MTR_4g052340 | 31.008 | 258 | 164 | 6 | 100 | 353 | 13 | 260 | 1.30e-23 | 99.0 |
| MsG0080047990.01.T01 | MTR_7g063260 | 29.961 | 257 | 163 | 8 | 101 | 349 | 16 | 263 | 2.24e-23 | 98.2 |
| MsG0080047990.01.T01 | MTR_4g078630 | 29.811 | 265 | 158 | 6 | 100 | 349 | 18 | 269 | 3.00e-23 | 98.2 |
| MsG0080047990.01.T01 | MTR_7g071680 | 27.957 | 279 | 158 | 9 | 100 | 349 | 28 | 292 | 3.48e-22 | 95.5 |
| MsG0080047990.01.T01 | MTR_8g442750 | 29.699 | 266 | 166 | 7 | 95 | 349 | 9 | 264 | 1.05e-21 | 94.4 |
| MsG0080047990.01.T01 | MTR_4g058810 | 26.766 | 269 | 179 | 6 | 96 | 354 | 6 | 266 | 1.40e-20 | 90.5 |
| MsG0080047990.01.T01 | MTR_7g105590 | 32.143 | 196 | 119 | 4 | 100 | 291 | 7 | 192 | 2.01e-20 | 88.2 |
| MsG0080047990.01.T01 | MTR_4g058840 | 26.766 | 269 | 179 | 6 | 96 | 354 | 6 | 266 | 5.08e-20 | 89.0 |
| MsG0080047990.01.T01 | MTR_4g058820 | 26.766 | 269 | 179 | 6 | 96 | 354 | 6 | 266 | 5.08e-20 | 89.0 |
| MsG0080047990.01.T01 | MTR_1196s0010 | 30.556 | 252 | 153 | 8 | 104 | 349 | 277 | 512 | 5.20e-20 | 91.7 |
| MsG0080047990.01.T01 | MTR_7g094510 | 30.385 | 260 | 162 | 8 | 101 | 351 | 6 | 255 | 6.66e-20 | 88.2 |
| MsG0080047990.01.T01 | MTR_4g064887 | 28.516 | 256 | 172 | 6 | 101 | 353 | 15 | 262 | 7.33e-20 | 88.2 |
| MsG0080047990.01.T01 | MTR_7g083870 | 29.278 | 263 | 162 | 7 | 100 | 349 | 34 | 285 | 8.65e-20 | 89.0 |
| MsG0080047990.01.T01 | MTR_7g063320 | 27.863 | 262 | 168 | 7 | 101 | 352 | 15 | 265 | 2.57e-18 | 84.0 |
| MsG0080047990.01.T01 | MTR_2g090165 | 28.826 | 281 | 144 | 12 | 100 | 353 | 5 | 256 | 3.32e-18 | 83.6 |
| MsG0080047990.01.T01 | MTR_7g105460 | 32.210 | 267 | 153 | 9 | 100 | 353 | 12 | 263 | 3.35e-18 | 84.0 |
| MsG0080047990.01.T01 | MTR_7g110140 | 28.897 | 263 | 158 | 6 | 100 | 349 | 5 | 251 | 3.45e-18 | 83.6 |
| MsG0080047990.01.T01 | MTR_7g094520 | 27.451 | 255 | 176 | 6 | 101 | 351 | 11 | 260 | 2.22e-17 | 81.3 |
| MsG0080047990.01.T01 | MTR_7g105580 | 29.741 | 232 | 128 | 6 | 98 | 325 | 5 | 205 | 2.78e-17 | 80.9 |
| MsG0080047990.01.T01 | MTR_7g110130 | 27.341 | 267 | 167 | 8 | 100 | 353 | 5 | 257 | 3.16e-17 | 80.9 |
| MsG0080047990.01.T01 | MTR_7g063390 | 26.070 | 257 | 173 | 7 | 101 | 349 | 16 | 263 | 3.63e-17 | 80.9 |
| MsG0080047990.01.T01 | MTR_4g064883 | 26.394 | 269 | 178 | 9 | 95 | 354 | 5 | 262 | 7.90e-17 | 79.7 |
| MsG0080047990.01.T01 | MTR_7g107670 | 26.136 | 264 | 168 | 7 | 100 | 349 | 32 | 282 | 9.29e-17 | 80.1 |
| MsG0080047990.01.T01 | MTR_8g096620 | 28.571 | 196 | 131 | 4 | 97 | 291 | 42 | 229 | 3.42e-16 | 79.0 |
| MsG0080047990.01.T01 | MTR_1g068955 | 27.660 | 282 | 176 | 6 | 81 | 354 | 6 | 267 | 2.44e-15 | 75.9 |
| MsG0080047990.01.T01 | MTR_7g063270 | 26.772 | 254 | 125 | 6 | 101 | 349 | 16 | 213 | 3.54e-15 | 73.9 |
| MsG0080047990.01.T01 | MTR_6g035395 | 27.612 | 268 | 142 | 8 | 100 | 349 | 4 | 237 | 4.72e-15 | 74.3 |
| MsG0080047990.01.T01 | MTR_3g068065 | 27.027 | 259 | 174 | 8 | 101 | 354 | 17 | 265 | 5.14e-15 | 74.7 |
| MsG0080047990.01.T01 | MTR_7g110160 | 28.470 | 281 | 127 | 13 | 100 | 353 | 5 | 238 | 7.37e-15 | 73.9 |
| MsG0080047990.01.T01 | MTR_8g096580 | 26.339 | 224 | 153 | 5 | 98 | 319 | 42 | 255 | 1.03e-14 | 74.3 |
| MsG0080047990.01.T01 | MTR_1g051165 | 26.238 | 202 | 143 | 4 | 94 | 289 | 7 | 208 | 1.89e-14 | 73.2 |
| MsG0080047990.01.T01 | MTR_3g068155 | 27.519 | 258 | 174 | 7 | 101 | 354 | 19 | 267 | 2.22e-14 | 72.8 |
| MsG0080047990.01.T01 | MTR_3g087850 | 30.256 | 195 | 110 | 6 | 105 | 291 | 30 | 206 | 3.02e-14 | 72.8 |
| MsG0080047990.01.T01 | MTR_3g068175 | 26.357 | 258 | 177 | 6 | 101 | 354 | 17 | 265 | 3.17e-14 | 72.4 |
| MsG0080047990.01.T01 | MTR_7g063360 | 25.475 | 263 | 167 | 8 | 101 | 349 | 16 | 263 | 9.51e-14 | 70.9 |
| MsG0080047990.01.T01 | MTR_5g008850 | 26.471 | 238 | 158 | 7 | 94 | 322 | 38 | 267 | 3.05e-13 | 70.5 |
| MsG0080047990.01.T01 | MTR_4g064887 | 27.411 | 197 | 134 | 4 | 101 | 295 | 15 | 204 | 3.02e-11 | 62.8 |
| MsG0080047990.01.T01 | MTR_4g084800 | 31.618 | 136 | 83 | 3 | 100 | 234 | 12 | 138 | 4.19e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080047990.01.T01 | AT1G54870 | 76.080 | 301 | 67 | 1 | 54 | 354 | 42 | 337 | 2.00e-173 | 486 |
| MsG0080047990.01.T01 | AT1G54870 | 76.080 | 301 | 67 | 1 | 54 | 354 | 40 | 335 | 2.53e-173 | 485 |
| MsG0080047990.01.T01 | AT3G05260 | 71.331 | 293 | 80 | 2 | 62 | 354 | 1 | 289 | 2.67e-162 | 456 |
| MsG0080047990.01.T01 | AT3G51680 | 28.664 | 307 | 179 | 10 | 69 | 349 | 1 | 293 | 3.28e-24 | 101 |
| MsG0080047990.01.T01 | AT4G05530 | 28.958 | 259 | 170 | 5 | 94 | 349 | 2 | 249 | 3.37e-23 | 97.4 |
| MsG0080047990.01.T01 | AT1G24360 | 27.509 | 269 | 182 | 6 | 89 | 352 | 59 | 319 | 4.89e-23 | 98.2 |
| MsG0080047990.01.T01 | AT3G26770 | 30.189 | 265 | 161 | 7 | 98 | 349 | 38 | 291 | 6.03e-23 | 97.8 |
| MsG0080047990.01.T01 | AT1G52340 | 30.451 | 266 | 160 | 8 | 100 | 349 | 17 | 273 | 5.18e-22 | 94.7 |
| MsG0080047990.01.T01 | AT2G47140 | 31.179 | 263 | 152 | 7 | 100 | 349 | 5 | 251 | 6.49e-22 | 94.0 |
| MsG0080047990.01.T01 | AT5G06060 | 31.395 | 258 | 164 | 7 | 101 | 354 | 9 | 257 | 6.81e-22 | 94.0 |
| MsG0080047990.01.T01 | AT1G63380 | 26.374 | 273 | 190 | 6 | 89 | 354 | 5 | 273 | 1.68e-21 | 93.2 |
| MsG0080047990.01.T01 | AT1G63380 | 26.692 | 266 | 184 | 6 | 96 | 354 | 17 | 278 | 2.34e-21 | 92.8 |
| MsG0080047990.01.T01 | AT1G63380 | 26.692 | 266 | 184 | 6 | 96 | 354 | 10 | 271 | 2.42e-21 | 92.8 |
| MsG0080047990.01.T01 | AT1G63380 | 26.692 | 266 | 184 | 6 | 96 | 354 | 14 | 275 | 2.51e-21 | 92.8 |
| MsG0080047990.01.T01 | AT1G62610 | 26.316 | 266 | 185 | 6 | 96 | 354 | 14 | 275 | 2.22e-20 | 90.1 |
| MsG0080047990.01.T01 | AT1G62610 | 26.007 | 273 | 191 | 6 | 89 | 354 | 2 | 270 | 2.24e-20 | 90.1 |
| MsG0080047990.01.T01 | AT1G62610 | 26.316 | 266 | 185 | 6 | 96 | 354 | 8 | 269 | 2.41e-20 | 90.1 |
| MsG0080047990.01.T01 | AT1G62610 | 26.316 | 266 | 185 | 6 | 96 | 354 | 10 | 271 | 2.56e-20 | 89.7 |
| MsG0080047990.01.T01 | AT2G29290 | 29.845 | 258 | 168 | 7 | 101 | 354 | 7 | 255 | 3.56e-20 | 89.4 |
| MsG0080047990.01.T01 | AT2G47120 | 30.798 | 263 | 159 | 7 | 99 | 352 | 5 | 253 | 5.08e-20 | 88.6 |
| MsG0080047990.01.T01 | AT2G47120 | 30.916 | 262 | 158 | 7 | 100 | 352 | 5 | 252 | 5.45e-20 | 88.6 |
| MsG0080047990.01.T01 | AT3G04000 | 28.244 | 262 | 175 | 7 | 101 | 352 | 14 | 272 | 7.62e-20 | 88.6 |
| MsG0080047990.01.T01 | AT2G29350 | 30.233 | 258 | 166 | 7 | 101 | 354 | 15 | 262 | 9.57e-20 | 88.2 |
| MsG0080047990.01.T01 | AT3G55290 | 29.146 | 199 | 132 | 4 | 96 | 289 | 13 | 207 | 2.88e-19 | 87.0 |
| MsG0080047990.01.T01 | AT3G55290 | 29.146 | 199 | 132 | 4 | 96 | 289 | 12 | 206 | 3.52e-19 | 86.7 |
| MsG0080047990.01.T01 | AT3G26760 | 28.148 | 270 | 162 | 10 | 98 | 349 | 33 | 288 | 3.96e-19 | 87.0 |
| MsG0080047990.01.T01 | AT5G50600 | 27.530 | 247 | 162 | 7 | 98 | 341 | 42 | 274 | 7.98e-19 | 86.7 |
| MsG0080047990.01.T01 | AT5G50700 | 27.530 | 247 | 162 | 7 | 98 | 341 | 42 | 274 | 7.98e-19 | 86.7 |
| MsG0080047990.01.T01 | AT2G29260 | 29.885 | 261 | 164 | 8 | 101 | 354 | 68 | 316 | 9.02e-19 | 86.3 |
| MsG0080047990.01.T01 | AT2G47130 | 30.038 | 263 | 154 | 8 | 100 | 349 | 5 | 250 | 9.28e-19 | 85.1 |
| MsG0080047990.01.T01 | AT3G12800 | 28.044 | 271 | 165 | 10 | 95 | 349 | 5 | 261 | 1.48e-18 | 85.5 |
| MsG0080047990.01.T01 | AT2G29150 | 29.057 | 265 | 170 | 8 | 96 | 354 | 11 | 263 | 1.63e-18 | 84.7 |
| MsG0080047990.01.T01 | AT3G29260 | 30.682 | 264 | 151 | 8 | 100 | 349 | 5 | 250 | 1.77e-18 | 84.3 |
| MsG0080047990.01.T01 | AT3G42960 | 29.057 | 265 | 161 | 5 | 100 | 349 | 7 | 259 | 7.75e-18 | 82.8 |
| MsG0080047990.01.T01 | AT5G18210 | 28.736 | 261 | 166 | 10 | 99 | 348 | 6 | 257 | 9.79e-18 | 82.4 |
| MsG0080047990.01.T01 | AT4G13180 | 29.057 | 265 | 177 | 8 | 93 | 352 | 5 | 263 | 1.66e-17 | 81.6 |
| MsG0080047990.01.T01 | AT3G03980 | 27.239 | 268 | 177 | 8 | 96 | 351 | 9 | 270 | 3.04e-17 | 81.3 |
| MsG0080047990.01.T01 | AT3G29250 | 29.455 | 275 | 141 | 9 | 100 | 349 | 5 | 251 | 3.09e-17 | 80.9 |
| MsG0080047990.01.T01 | AT3G29250 | 28.137 | 263 | 160 | 6 | 100 | 349 | 41 | 287 | 3.83e-17 | 81.3 |
| MsG0080047990.01.T01 | AT2G29360 | 27.925 | 265 | 174 | 7 | 96 | 354 | 11 | 264 | 5.85e-17 | 80.5 |
| MsG0080047990.01.T01 | AT3G29250 | 28.244 | 262 | 159 | 6 | 101 | 349 | 44 | 289 | 7.50e-17 | 80.5 |
| MsG0080047990.01.T01 | AT4G03140 | 26.766 | 269 | 160 | 7 | 100 | 349 | 77 | 327 | 1.23e-16 | 80.5 |
| MsG0080047990.01.T01 | AT2G30670 | 29.658 | 263 | 162 | 9 | 101 | 354 | 7 | 255 | 1.33e-16 | 79.0 |
| MsG0080047990.01.T01 | AT1G07440 | 27.586 | 261 | 169 | 7 | 101 | 354 | 12 | 259 | 1.93e-16 | 78.6 |
| MsG0080047990.01.T01 | AT5G10050 | 32.292 | 192 | 114 | 5 | 105 | 293 | 9 | 187 | 2.03e-16 | 79.0 |
| MsG0080047990.01.T01 | AT3G55310 | 26.364 | 220 | 153 | 4 | 89 | 303 | 5 | 220 | 2.19e-16 | 79.0 |
| MsG0080047990.01.T01 | AT5G18210 | 28.689 | 244 | 155 | 9 | 101 | 333 | 8 | 243 | 1.19e-15 | 76.6 |
| MsG0080047990.01.T01 | AT2G17845 | 26.540 | 211 | 145 | 5 | 100 | 303 | 46 | 253 | 2.02e-15 | 76.6 |
| MsG0080047990.01.T01 | AT3G47350 | 24.427 | 262 | 171 | 8 | 91 | 335 | 34 | 285 | 2.32e-15 | 76.3 |
| MsG0080047990.01.T01 | AT2G29310 | 29.588 | 267 | 155 | 11 | 101 | 353 | 7 | 254 | 3.76e-15 | 75.1 |
| MsG0080047990.01.T01 | AT2G29350 | 32.240 | 183 | 117 | 5 | 176 | 354 | 45 | 224 | 5.79e-15 | 73.9 |
| MsG0080047990.01.T01 | AT5G50690 | 30.151 | 199 | 127 | 7 | 96 | 291 | 40 | 229 | 6.61e-15 | 73.9 |
| MsG0080047990.01.T01 | AT5G50590 | 30.151 | 199 | 127 | 7 | 96 | 291 | 40 | 229 | 6.61e-15 | 73.9 |
| MsG0080047990.01.T01 | AT2G29370 | 25.926 | 270 | 173 | 8 | 96 | 354 | 11 | 264 | 6.90e-15 | 74.3 |
| MsG0080047990.01.T01 | AT5G50690 | 30.151 | 199 | 127 | 7 | 96 | 291 | 40 | 229 | 8.00e-15 | 74.7 |
| MsG0080047990.01.T01 | AT5G50590 | 30.151 | 199 | 127 | 7 | 96 | 291 | 40 | 229 | 8.00e-15 | 74.7 |
| MsG0080047990.01.T01 | AT1G07450 | 27.413 | 259 | 172 | 8 | 101 | 354 | 8 | 255 | 1.45e-14 | 73.2 |
| MsG0080047990.01.T01 | AT3G47350 | 24.681 | 235 | 163 | 6 | 91 | 321 | 34 | 258 | 1.47e-14 | 73.9 |
| MsG0080047990.01.T01 | AT2G29290 | 30.208 | 192 | 128 | 5 | 167 | 354 | 49 | 238 | 3.02e-14 | 72.0 |
| MsG0080047990.01.T01 | AT3G46170 | 27.136 | 199 | 136 | 5 | 96 | 289 | 21 | 215 | 3.25e-14 | 72.8 |
| MsG0080047990.01.T01 | AT2G29320 | 27.757 | 263 | 168 | 9 | 101 | 354 | 13 | 262 | 2.24e-12 | 67.0 |
| MsG0080047990.01.T01 | AT4G10020 | 25.543 | 184 | 128 | 3 | 95 | 276 | 41 | 217 | 2.54e-12 | 67.8 |
| MsG0080047990.01.T01 | AT2G29310 | 32.961 | 179 | 101 | 7 | 186 | 354 | 84 | 253 | 6.99e-12 | 65.5 |
| MsG0080047990.01.T01 | AT2G29300 | 27.444 | 266 | 165 | 11 | 101 | 354 | 7 | 256 | 7.39e-11 | 62.4 |
Find 97 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAAAAGATGCTGGTATTAA+TGG | 0.214643 | contig161end:+24878 | None:intergenic |
| AGCTGGTAAGCAAGGGTATA+AGG | 0.257323 | contig161end:-24934 | MsG0080047990.01.T01:CDS |
| AGCTGCTAGAGATGGGGTTT+GGG | 0.268933 | contig161end:-24515 | MsG0080047990.01.T01:three_prime_UTR |
| TATACTTGAAGTTTGTTTGA+TGG | 0.274878 | contig161end:+26163 | None:intergenic |
| AATGGCTGTAGCAGCTGATT+TGG | 0.283657 | contig161end:-25424 | MsG0080047990.01.T01:CDS |
| GAGCTGCTAGAGATGGGGTT+TGG | 0.326232 | contig161end:-24516 | MsG0080047990.01.T01:three_prime_UTR |
| GATGAGATTGTTAATGCTTA+TGG | 0.332143 | contig161end:-25372 | MsG0080047990.01.T01:CDS |
| TTGTTTGATGGCTTGTAGTC+AGG | 0.340288 | contig161end:+26175 | None:intergenic |
| GAGGAAGAAACTGCTCAATT+TGG | 0.343335 | contig161end:-24854 | MsG0080047990.01.T01:CDS |
| ATGGCTGTAGCAGCTGATTT+GGG | 0.347891 | contig161end:-25423 | MsG0080047990.01.T01:CDS |
| TGCAACCGTAGCACCTTCTA+AGG | 0.360573 | contig161end:+25536 | None:intergenic |
| CCCTCTGAGCTGCTAGAGAT+GGG | 0.378633 | contig161end:-24522 | MsG0080047990.01.T01:three_prime_UTR |
| AGTAGAGTAGTAGTGTATTA+TGG | 0.389351 | contig161end:-24569 | MsG0080047990.01.T01:three_prime_UTR |
| AAAAGCCACAATTGCACCTT+TGG | 0.391395 | contig161end:+24976 | None:intergenic |
| ACAGGAGGTGACTCTGGAAT+TGG | 0.394290 | contig161end:-25582 | MsG0080047990.01.T01:CDS |
| GTGCTTCTCTTCAAAGTCTC+AGG | 0.396197 | contig161end:-24294 | MsG0080047990.01.T01:three_prime_UTR |
| GCCTGGGAAGGAACATGTTA+TGG | 0.396697 | contig161end:-26221 | MsG0080047990.01.T01:CDS |
| GTTGCATTTACATATGTAAA+GGG | 0.404353 | contig161end:-25519 | MsG0080047990.01.T01:CDS |
| TGTTAACAAGAATATCAATA+TGG | 0.406163 | contig161end:+25349 | None:intergenic |
| TAGGATGGAGCAACCTCAAT+AGG | 0.420125 | contig161end:+24800 | None:intergenic |
| CAAATTACACAAAGTGGAAA+TGG | 0.420706 | contig161end:+26381 | None:intergenic |
| GAGTGGCACCTGGGCCCATA+TGG | 0.425158 | contig161end:-24904 | MsG0080047990.01.T01:CDS |
| CCCCTCTGAGCTGCTAGAGA+TGG | 0.432873 | contig161end:-24523 | MsG0080047990.01.T01:three_prime_UTR |
| TGGTATTAATGGTGTCCATA+TGG | 0.436531 | contig161end:+24889 | None:intergenic |
| CAAAAGCAAGAGACACAGCC+TGG | 0.437059 | contig161end:-26238 | MsG0080047990.01.T01:CDS |
| TTATCTCTGATGTCATCAAA+TGG | 0.440508 | contig161end:-24266 | MsG0080047990.01.T01:three_prime_UTR |
| GTTAATTACCATTGGGGTGA+AGG | 0.451118 | contig161end:+24729 | None:intergenic |
| AAAATAAGAGGAACATTGGT+TGG | 0.452767 | contig161end:+24763 | None:intergenic |
| TTGTTTGTAAGAATGGCTTC+AGG | 0.454658 | contig161end:-26280 | MsG0080047990.01.T01:CDS |
| AGGGTCAATGGAGTGGCACC+TGG | 0.463348 | contig161end:-24914 | MsG0080047990.01.T01:CDS |
| GGTAAGGTAGCTGTAATAAC+AGG | 0.464066 | contig161end:-25600 | MsG0080047990.01.T01:CDS |
| TCTTCCTCCTTAAAAGATGC+TGG | 0.464676 | contig161end:+24869 | None:intergenic |
| GTAATAACAGGAGGTGACTC+TGG | 0.469701 | contig161end:-25588 | MsG0080047990.01.T01:CDS |
| AAATCAGCTGCTACAGCCAT+TGG | 0.473059 | contig161end:+25426 | None:intergenic |
| GGTTGCATTTACATATGTAA+AGG | 0.478222 | contig161end:-25520 | MsG0080047990.01.T01:CDS |
| CCCATCTCTAGCAGCTCAGA+GGG | 0.491198 | contig161end:+24522 | None:intergenic |
| GCTGGTAAGCAAGGGTATAA+GGG | 0.491721 | contig161end:-24933 | MsG0080047990.01.T01:CDS |
| AGGACACACTAGAAATGATA+AGG | 0.503643 | contig161end:-25476 | MsG0080047990.01.T01:CDS |
| TGCAAAGAGTGCTGATGCTA+AGG | 0.507275 | contig161end:-25451 | MsG0080047990.01.T01:CDS |
| AGCAAGGGTATAAGGGTCAA+TGG | 0.508243 | contig161end:-24926 | MsG0080047990.01.T01:CDS |
| TGTTTGATGGCTTGTAGTCA+GGG | 0.510691 | contig161end:+26176 | None:intergenic |
| ATCACTTCAGCTGGTAAGCA+AGG | 0.512052 | contig161end:-24942 | MsG0080047990.01.T01:CDS |
| TATCTCTGATGTCATCAAAT+GGG | 0.512592 | contig161end:-24265 | MsG0080047990.01.T01:three_prime_UTR |
| GGTATTAATGGTGTCCATAT+GGG | 0.514396 | contig161end:+24890 | None:intergenic |
| ATGTTACATCTTAACCCACT+TGG | 0.519077 | contig161end:-24352 | MsG0080047990.01.T01:three_prime_UTR |
| TCCATAACATGTTCCTTCCC+AGG | 0.521691 | contig161end:+26220 | None:intergenic |
| TCAGGTGGAACCGTGGTGAA+TGG | 0.529354 | contig161end:-24633 | MsG0080047990.01.T01:intron |
| GAAGAAACTGCTCAATTTGG+TGG | 0.540906 | contig161end:-24851 | MsG0080047990.01.T01:CDS |
| GACTTGTCCAGTAAAATAAG+AGG | 0.544263 | contig161end:+24751 | None:intergenic |
| GGGAGGCAAATTACACAAAG+TGG | 0.546766 | contig161end:+26375 | None:intergenic |
| TGTTGAATTGACTCTTGTCG+TGG | 0.550842 | contig161end:-24395 | MsG0080047990.01.T01:three_prime_UTR |
| TGTTACATCTTAACCCACTT+GGG | 0.556280 | contig161end:-24351 | MsG0080047990.01.T01:three_prime_UTR |
| GCACTGAAGCACATGAAGGA+AGG | 0.556303 | contig161end:-25070 | MsG0080047990.01.T01:CDS |
| TGCTAGAGATGGGGTTTGGG+AGG | 0.557075 | contig161end:-24512 | MsG0080047990.01.T01:three_prime_UTR |
| TGCTGATGCTAAGGATCCAA+TGG | 0.557285 | contig161end:-25442 | MsG0080047990.01.T01:CDS |
| AATGGTGTCCATATGGGCCC+AGG | 0.558819 | contig161end:+24896 | None:intergenic |
| GAGGCAAGAAAGACATAGGA+TGG | 0.558839 | contig161end:+24785 | None:intergenic |
| AAGAGCTGGTCAGCCTATTG+AGG | 0.560279 | contig161end:-24813 | MsG0080047990.01.T01:CDS |
| ATCTACCAAAGGTGCAATTG+TGG | 0.562333 | contig161end:-24981 | MsG0080047990.01.T01:CDS |
| TGATGAAGACAAGGATGCTA+AGG | 0.565763 | contig161end:-25496 | MsG0080047990.01.T01:CDS |
| TGATGAGAATTGCAAGAGAG+TGG | 0.569733 | contig161end:-25397 | MsG0080047990.01.T01:CDS |
| CACTGAAGCACATGAAGGAA+GGG | 0.573720 | contig161end:-25069 | MsG0080047990.01.T01:CDS |
| GGGCAAGTAAATTGAGGCAG+CGG | 0.573945 | contig161end:+26196 | None:intergenic |
| AAGGGGACTATCACTTCAGC+TGG | 0.574318 | contig161end:-24951 | MsG0080047990.01.T01:CDS |
| CAAGTGCCTATGAAAAGAGC+TGG | 0.576070 | contig161end:-24827 | MsG0080047990.01.T01:CDS |
| AAAAGCAAGAGACACAGCCT+GGG | 0.578653 | contig161end:-26237 | MsG0080047990.01.T01:CDS |
| ATAAGAGGAACATTGGTTGG+AGG | 0.579832 | contig161end:+24766 | None:intergenic |
| CAGTAAAATAAGAGGAACAT+TGG | 0.583914 | contig161end:+24759 | None:intergenic |
| CTTGTCGTGGAATATATACA+AGG | 0.585054 | contig161end:-24382 | MsG0080047990.01.T01:three_prime_UTR |
| ACCCACTTGGGTTGACTCAG+TGG | 0.585506 | contig161end:-24339 | MsG0080047990.01.T01:three_prime_UTR |
| GCAAGAGACACAGCCTGGGA+AGG | 0.594984 | contig161end:-26233 | MsG0080047990.01.T01:CDS |
| GTTGGAGGCAAGAAAGACAT+AGG | 0.599190 | contig161end:+24781 | None:intergenic |
| TTGAGGAGATTGATGAGTCA+AGG | 0.599987 | contig161end:-25296 | MsG0080047990.01.T01:CDS |
| AAGCATGTTAATTACCATTG+GGG | 0.601501 | contig161end:+24723 | None:intergenic |
| TTGATGAGTCAAGGCTAGAG+AGG | 0.603682 | contig161end:-25287 | MsG0080047990.01.T01:CDS |
| TCTCATATTTCTTCATGACA+AGG | 0.604054 | contig161end:-25245 | MsG0080047990.01.T01:intron |
| ATATGAGTGCTCATCAGTTG+AGG | 0.605741 | contig161end:-25313 | MsG0080047990.01.T01:CDS |
| TTGAAGAGAAGCACACTCGC+AGG | 0.605888 | contig161end:+24303 | None:intergenic |
| CAGTGATATTATTATATGAG+TGG | 0.610142 | contig161end:-24601 | MsG0080047990.01.T01:three_prime_UTR |
| TAGTCAGGGCAAGTAAATTG+AGG | 0.610184 | contig161end:+26190 | None:intergenic |
| GGACAAGTCCTTCACCCCAA+TGG | 0.617934 | contig161end:-24737 | MsG0080047990.01.T01:intron |
| TGATGAGTCAAGGCTAGAGA+GGG | 0.619047 | contig161end:-25286 | MsG0080047990.01.T01:CDS |
| CCTCTGAGCTGCTAGAGATG+GGG | 0.620971 | contig161end:-24521 | MsG0080047990.01.T01:three_prime_UTR |
| TCACTTCAGCTGGTAAGCAA+GGG | 0.625465 | contig161end:-24941 | MsG0080047990.01.T01:CDS |
| CCCCATCTCTAGCAGCTCAG+AGG | 0.631969 | contig161end:+24521 | None:intergenic |
| GCATGCACTGAAGCACATGA+AGG | 0.636267 | contig161end:-25074 | MsG0080047990.01.T01:CDS |
| TGTAAAGGGTGATGAAGACA+AGG | 0.640377 | contig161end:-25505 | MsG0080047990.01.T01:CDS |
| GGGTATAAGGGTCAATGGAG+TGG | 0.641256 | contig161end:-24921 | MsG0080047990.01.T01:CDS |
| GGGTCAATGGAGTGGCACCT+GGG | 0.643479 | contig161end:-24913 | MsG0080047990.01.T01:CDS |
| ACCACTGAGTCAACCCAAGT+GGG | 0.645995 | contig161end:+24338 | None:intergenic |
| TACCACTGAGTCAACCCAAG+TGG | 0.657900 | contig161end:+24337 | None:intergenic |
| TTAGACTATACATCTACCAA+AGG | 0.664324 | contig161end:-24992 | MsG0080047990.01.T01:CDS |
| AAGGTAGCTGTAATAACAGG+AGG | 0.669413 | contig161end:-25597 | MsG0080047990.01.T01:CDS |
| ACATCAGTGAATGCATACAA+AGG | 0.684252 | contig161end:-25028 | MsG0080047990.01.T01:CDS |
| GAGTCTTCAACCATTCACCA+CGG | 0.723636 | contig161end:+24623 | None:intergenic |
| CCATCTCTAGCAGCTCAGAG+GGG | 0.753161 | contig161end:+24523 | None:intergenic |
| TTGATGATGAACAAAGTGTG+CGG | 0.762449 | contig161end:+26416 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATCTATTATTTACAATAT+TGG | - | contig161end:24868-24887 | MsG0080047990.01.T01:CDS | 10.0% |
| !! | TATAAGAAATAATTTGATAC+AGG | + | contig161end:25002-25021 | None:intergenic | 15.0% |
| !! | TGATGTTTACATTAATTAAT+TGG | - | contig161end:26026-26045 | MsG0080047990.01.T01:intron | 15.0% |
| !! | TTCAATATAACTATATGAAT+TGG | + | contig161end:24615-24634 | None:intergenic | 15.0% |
| !! | TTGATTTAATATATATGACA+AGG | - | contig161end:24786-24805 | MsG0080047990.01.T01:CDS | 15.0% |
| !!! | AAACCTATAATATGTATTTT+TGG | - | contig161end:26242-26261 | MsG0080047990.01.T01:CDS | 15.0% |
| !!! | AATATTTCTTTTTCAATTTG+AGG | - | contig161end:24715-24734 | MsG0080047990.01.T01:intron | 15.0% |
| !!! | GTTATTTTTCTAAGTTATTA+TGG | + | contig161end:24980-24999 | None:intergenic | 15.0% |
| !!! | TTAAGATTAATATGTTTTTC+AGG | - | contig161end:26062-26081 | MsG0080047990.01.T01:intron | 15.0% |
| !!! | TTTTTTAATTTGGAACAAAA+TGG | + | contig161end:24641-24660 | None:intergenic | 15.0% |
| !! | ATATAACTATATGAATTGGT+TGG | + | contig161end:24611-24630 | None:intergenic | 20.0% |
| !! | CTCAAACTTACTATTAAAAT+AGG | + | contig161end:24820-24839 | None:intergenic | 20.0% |
| !! | TCTCCAAAAATACATATTAT+AGG | + | contig161end:26248-26267 | None:intergenic | 20.0% |
| !! | TGTTAACAAGAATATCAATA+TGG | + | contig161end:25367-25386 | None:intergenic | 20.0% |
| !!! | AAAAAACTTGTTTGTAAGAA+TGG | - | contig161end:24426-24445 | MsG0080047990.01.T01:three_prime_UTR | 20.0% |
| !!! | ATTCTTACAAACAAGTTTTT+TGG | + | contig161end:24427-24446 | None:intergenic | 20.0% |
| ! | CAGTGATATTATTATATGAG+TGG | - | contig161end:26112-26131 | MsG0080047990.01.T01:intron | 25.0% |
| ! | GTTGCATTTACATATGTAAA+GGG | - | contig161end:25194-25213 | MsG0080047990.01.T01:intron | 25.0% |
| ! | TAAGAAACTTATGATATGTC+CGG | - | contig161end:24931-24950 | MsG0080047990.01.T01:CDS | 25.0% |
| ! | TAAGCATGTTAATTACCATT+GGG | + | contig161end:25994-26013 | None:intergenic | 25.0% |
| ! | TTAAAAGATGCTGGTATTAA+TGG | + | contig161end:25838-25857 | None:intergenic | 25.0% |
| ! | TTAAGCATGTTAATTACCAT+TGG | + | contig161end:25995-26014 | None:intergenic | 25.0% |
| !! | ATTAATACCAGCATCTTTTA+AGG | - | contig161end:25837-25856 | MsG0080047990.01.T01:intron | 25.0% |
| !! | TATACTTGAAGTTTGTTTGA+TGG | + | contig161end:24553-24572 | None:intergenic | 25.0% |
| !! | TTTTCTTGTGTTAAACTTCA+GGG | - | contig161end:25092-25111 | MsG0080047990.01.T01:intron | 25.0% |
| !! | TTTTTCTTGTGTTAAACTTC+AGG | - | contig161end:25091-25110 | MsG0080047990.01.T01:intron | 25.0% |
| !!! | AAGAAATTGAGTCTTGTTTT+TGG | + | contig161end:24362-24381 | None:intergenic | 25.0% |
| !!! | AGAAATTGAGTCTTGTTTTT+GGG | + | contig161end:24361-24380 | None:intergenic | 25.0% |
| !!! | AGATTAATATGTTTTTCAGG+TGG | - | contig161end:26065-26084 | MsG0080047990.01.T01:intron | 25.0% |
| !!! | TGCAATTTATTTTCCTTAGA+AGG | - | contig161end:25164-25183 | MsG0080047990.01.T01:intron | 25.0% |
| !!! | TTTTTTATTAGAAGTTGTCC+CGG | + | contig161end:24953-24972 | None:intergenic | 25.0% |
| !!! | TTTTTTGGTGAAGATATTGA+GGG | + | contig161end:24412-24431 | None:intergenic | 25.0% |
| AAAATAAGAGGAACATTGGT+TGG | + | contig161end:25953-25972 | None:intergenic | 30.0% | |
| AAGAAACTTATGATATGTCC+GGG | - | contig161end:24932-24951 | MsG0080047990.01.T01:CDS | 30.0% | |
| AAGCATGTTAATTACCATTG+GGG | + | contig161end:25993-26012 | None:intergenic | 30.0% | |
| AGTAGAGTAGTAGTGTATTA+TGG | - | contig161end:26144-26163 | MsG0080047990.01.T01:intron | 30.0% | |
| ATAAATCAACATCAACCCAA+TGG | + | contig161end:24848-24867 | None:intergenic | 30.0% | |
| CAAATTACACAAAGTGGAAA+TGG | + | contig161end:24335-24354 | None:intergenic | 30.0% | |
| CAGTAAAATAAGAGGAACAT+TGG | + | contig161end:25957-25976 | None:intergenic | 30.0% | |
| GAAAAAAAGGTGACAAATGA+AGG | + | contig161end:24584-24603 | None:intergenic | 30.0% | |
| GATGAGATTGTTAATGCTTA+TGG | - | contig161end:25341-25360 | MsG0080047990.01.T01:CDS | 30.0% | |
| GGTTGCATTTACATATGTAA+AGG | - | contig161end:25193-25212 | MsG0080047990.01.T01:intron | 30.0% | |
| TAAGTTTGAGTATCACCATT+GGG | - | contig161end:24830-24849 | MsG0080047990.01.T01:CDS | 30.0% | |
| TAATTGTACCATATATGTGC+AGG | - | contig161end:25617-25636 | MsG0080047990.01.T01:intron | 30.0% | |
| TATCTCTGATGTCATCAAAT+GGG | - | contig161end:26448-26467 | MsG0080047990.01.T01:CDS | 30.0% | |
| TCTCATATTTCTTCATGACA+AGG | - | contig161end:25468-25487 | MsG0080047990.01.T01:CDS | 30.0% | |
| TTAGACTATACATCTACCAA+AGG | - | contig161end:25721-25740 | MsG0080047990.01.T01:intron | 30.0% | |
| TTATCTCTGATGTCATCAAA+TGG | - | contig161end:26447-26466 | MsG0080047990.01.T01:CDS | 30.0% | |
| ! | ACTATATGAATTGGTTGGTA+TGG | + | contig161end:24606-24625 | None:intergenic | 30.0% |
| ! | ATTGGTTGGTATGGAAAAAA+AGG | + | contig161end:24597-24616 | None:intergenic | 30.0% |
| !! | TTCTGAGTTGATGGAAAAAT+TGG | + | contig161end:24385-24404 | None:intergenic | 30.0% |
| !! | TTTTTGGTGAAGATATTGAG+GGG | + | contig161end:24411-24430 | None:intergenic | 30.0% |
| !!! | CAATGTTCCTCTTATTTTAC+TGG | - | contig161end:25955-25974 | MsG0080047990.01.T01:intron | 30.0% |
| !!! | GTTTTTTGGTGAAGATATTG+AGG | + | contig161end:24413-24432 | None:intergenic | 30.0% |
| ACATCAGTGAATGCATACAA+AGG | - | contig161end:25685-25704 | MsG0080047990.01.T01:intron | 35.0% | |
| AGGACACACTAGAAATGATA+AGG | - | contig161end:25237-25256 | MsG0080047990.01.T01:intron | 35.0% | |
| ATGTTACATCTTAACCCACT+TGG | - | contig161end:26361-26380 | MsG0080047990.01.T01:CDS | 35.0% | |
| CTTGTCGTGGAATATATACA+AGG | - | contig161end:26331-26350 | MsG0080047990.01.T01:CDS | 35.0% | |
| GACTTGTCCAGTAAAATAAG+AGG | + | contig161end:25965-25984 | None:intergenic | 35.0% | |
| GGTATTAATGGTGTCCATAT+GGG | + | contig161end:25826-25845 | None:intergenic | 35.0% | |
| GTAAGTTTGAGTATCACCAT+TGG | - | contig161end:24829-24848 | MsG0080047990.01.T01:CDS | 35.0% | |
| TCGAATATAACCACATGTGT+TGG | + | contig161end:25543-25562 | None:intergenic | 35.0% | |
| TGGTATTAATGGTGTCCATA+TGG | + | contig161end:25827-25846 | None:intergenic | 35.0% | |
| TGTTACATCTTAACCCACTT+GGG | - | contig161end:26362-26381 | MsG0080047990.01.T01:CDS | 35.0% | |
| TTGTGTTAAACTTCAGGGTA+AGG | - | contig161end:25097-25116 | MsG0080047990.01.T01:intron | 35.0% | |
| TTGTTTGTAAGAATGGCTTC+AGG | - | contig161end:24433-24452 | MsG0080047990.01.T01:three_prime_UTR | 35.0% | |
| ! | TGCAATTGTGGCTTTTACAA+GGG | - | contig161end:25744-25763 | MsG0080047990.01.T01:intron | 35.0% |
| !! | AATACCAGCATCTTTTAAGG+AGG | - | contig161end:25840-25859 | MsG0080047990.01.T01:intron | 35.0% |
| !! | TTGATGATGAACAAAGTGTG+CGG | + | contig161end:24300-24319 | None:intergenic | 35.0% |
| !!! | AATTGAGTCTTGTTTTTGGG+AGG | + | contig161end:24358-24377 | None:intergenic | 35.0% |
| !!! | ATTTTCCTTAGAAGGTGCTA+CGG | - | contig161end:25172-25191 | MsG0080047990.01.T01:intron | 35.0% |
| AAAAGCCACAATTGCACCTT+TGG | + | contig161end:25740-25759 | None:intergenic | 40.0% | |
| AAGCAACGTCGTAGATACTA+TGG | + | contig161end:25571-25590 | None:intergenic | 40.0% | |
| AAGGTAGCTGTAATAACAGG+AGG | - | contig161end:25116-25135 | MsG0080047990.01.T01:intron | 40.0% | |
| ATATGAGTGCTCATCAGTTG+AGG | - | contig161end:25400-25419 | MsG0080047990.01.T01:CDS | 40.0% | |
| CTACGACGTTGCTTATTCAT+CGG | - | contig161end:25577-25596 | MsG0080047990.01.T01:CDS | 40.0% | |
| GAAGAAACTGCTCAATTTGG+TGG | - | contig161end:25862-25881 | MsG0080047990.01.T01:intron | 40.0% | |
| GAGGAAGAAACTGCTCAATT+TGG | - | contig161end:25859-25878 | MsG0080047990.01.T01:intron | 40.0% | |
| GGTAAGGTAGCTGTAATAAC+AGG | - | contig161end:25113-25132 | MsG0080047990.01.T01:intron | 40.0% | |
| GTTAATTACCATTGGGGTGA+AGG | + | contig161end:25987-26006 | None:intergenic | 40.0% | |
| TAGTCAGGGCAAGTAAATTG+AGG | + | contig161end:24526-24545 | None:intergenic | 40.0% | |
| TCTTCCTCCTTAAAAGATGC+TGG | + | contig161end:25847-25866 | None:intergenic | 40.0% | |
| TGATGAAGACAAGGATGCTA+AGG | - | contig161end:25217-25236 | MsG0080047990.01.T01:intron | 40.0% | |
| TGATGAGAATTGCAAGAGAG+TGG | - | contig161end:25316-25335 | MsG0080047990.01.T01:CDS | 40.0% | |
| TGTAAAGGGTGATGAAGACA+AGG | - | contig161end:25208-25227 | MsG0080047990.01.T01:intron | 40.0% | |
| TTGAGGAGATTGATGAGTCA+AGG | - | contig161end:25417-25436 | MsG0080047990.01.T01:CDS | 40.0% | |
| ! | ATAAGAGGAACATTGGTTGG+AGG | + | contig161end:25950-25969 | None:intergenic | 40.0% |
| ! | ATCTACCAAAGGTGCAATTG+TGG | - | contig161end:25732-25751 | MsG0080047990.01.T01:intron | 40.0% |
| ! | GCAATTGTGGCTTTTACAAG+GGG | - | contig161end:25745-25764 | MsG0080047990.01.T01:intron | 40.0% |
| ! | GTGCAATTGTGGCTTTTACA+AGG | - | contig161end:25743-25762 | MsG0080047990.01.T01:intron | 40.0% |
| ! | TGTTGAATTGACTCTTGTCG+TGG | - | contig161end:26318-26337 | MsG0080047990.01.T01:CDS | 40.0% |
| ! | TGTTTGATGGCTTGTAGTCA+GGG | + | contig161end:24540-24559 | None:intergenic | 40.0% |
| ! | TTGTTTGATGGCTTGTAGTC+AGG | + | contig161end:24541-24560 | None:intergenic | 40.0% |
| AAAAGCAAGAGACACAGCCT+GGG | - | contig161end:24476-24495 | MsG0080047990.01.T01:three_prime_UTR | 45.0% | |
| AAATCAGCTGCTACAGCCAT+TGG | + | contig161end:25290-25309 | None:intergenic | 45.0% | |
| AATGGCTGTAGCAGCTGATT+TGG | - | contig161end:25289-25308 | MsG0080047990.01.T01:CDS | 45.0% | |
| AGTGCATGCCTGCACATATA+TGG | + | contig161end:25628-25647 | None:intergenic | 45.0% | |
| ATCACTTCAGCTGGTAAGCA+AGG | - | contig161end:25771-25790 | MsG0080047990.01.T01:intron | 45.0% | |
| CAAGTGCCTATGAAAAGAGC+TGG | - | contig161end:25886-25905 | MsG0080047990.01.T01:intron | 45.0% | |
| CACTGAAGCACATGAAGGAA+GGG | - | contig161end:25644-25663 | MsG0080047990.01.T01:intron | 45.0% | |
| GAGGCAAGAAAGACATAGGA+TGG | + | contig161end:25931-25950 | None:intergenic | 45.0% | |
| GAGTCTTCAACCATTCACCA+CGG | + | contig161end:26093-26112 | None:intergenic | 45.0% | |
| GGGAGGCAAATTACACAAAG+TGG | + | contig161end:24341-24360 | None:intergenic | 45.0% | |
| GTAATAACAGGAGGTGACTC+TGG | - | contig161end:25125-25144 | MsG0080047990.01.T01:intron | 45.0% | |
| GTGCTTCTCTTCAAAGTCTC+AGG | - | contig161end:26419-26438 | MsG0080047990.01.T01:CDS | 45.0% | |
| GTTGGAGGCAAGAAAGACAT+AGG | + | contig161end:25935-25954 | None:intergenic | 45.0% | |
| TAGGATGGAGCAACCTCAAT+AGG | + | contig161end:25916-25935 | None:intergenic | 45.0% | |
| TCACTTCAGCTGGTAAGCAA+GGG | - | contig161end:25772-25791 | MsG0080047990.01.T01:intron | 45.0% | |
| TCCATAACATGTTCCTTCCC+AGG | + | contig161end:24496-24515 | None:intergenic | 45.0% | |
| TGATGAGTCAAGGCTAGAGA+GGG | - | contig161end:25427-25446 | MsG0080047990.01.T01:CDS | 45.0% | |
| TGCTGATGCTAAGGATCCAA+TGG | - | contig161end:25271-25290 | MsG0080047990.01.T01:CDS | 45.0% | |
| TGTTACGTGTCCAACACATG+TGG | - | contig161end:25530-25549 | MsG0080047990.01.T01:CDS | 45.0% | |
| TTGATGAGTCAAGGCTAGAG+AGG | - | contig161end:25426-25445 | MsG0080047990.01.T01:CDS | 45.0% | |
| ! | AGCAAGGGTATAAGGGTCAA+TGG | - | contig161end:25787-25806 | MsG0080047990.01.T01:intron | 45.0% |
| ! | AGCTGGTAAGCAAGGGTATA+AGG | - | contig161end:25779-25798 | MsG0080047990.01.T01:intron | 45.0% |
| ! | ATGGCTGTAGCAGCTGATTT+GGG | - | contig161end:25290-25309 | MsG0080047990.01.T01:CDS | 45.0% |
| ! | GCTGGTAAGCAAGGGTATAA+GGG | - | contig161end:25780-25799 | MsG0080047990.01.T01:intron | 45.0% |
| !! | CTGTGTCTCTTGCTTTTGTG+GGG | + | contig161end:24473-24492 | None:intergenic | 45.0% |
| !! | GAGGGGATTTTCTGAGTTGA+TGG | + | contig161end:24394-24413 | None:intergenic | 45.0% |
| !! | GCTGTGTCTCTTGCTTTTGT+GGG | + | contig161end:24474-24493 | None:intergenic | 45.0% |
| !! | TGCAAAGAGTGCTGATGCTA+AGG | - | contig161end:25262-25281 | MsG0080047990.01.T01:CDS | 45.0% |
| !! | TGTGTCTCTTGCTTTTGTGG+GGG | + | contig161end:24472-24491 | None:intergenic | 45.0% |
| !!! | ATGTTTTTCAGGTGGAACCG+TGG | - | contig161end:26073-26092 | MsG0080047990.01.T01:intron | 45.0% |
| !!! | ATTGTATAATTTTTTTAATT+TGG | + | contig161end:24651-24670 | None:intergenic | 5.0% |
| AAGAGCTGGTCAGCCTATTG+AGG | - | contig161end:25900-25919 | MsG0080047990.01.T01:intron | 50.0% | |
| AAGGGGACTATCACTTCAGC+TGG | - | contig161end:25762-25781 | MsG0080047990.01.T01:intron | 50.0% | |
| ACCACTGAGTCAACCCAAGT+GGG | + | contig161end:26378-26397 | None:intergenic | 50.0% | |
| AGCTGCTAGAGATGGGGTTT+GGG | - | contig161end:26198-26217 | MsG0080047990.01.T01:CDS | 50.0% | |
| CAAAAGCAAGAGACACAGCC+TGG | - | contig161end:24475-24494 | MsG0080047990.01.T01:three_prime_UTR | 50.0% | |
| GCACTGAAGCACATGAAGGA+AGG | - | contig161end:25643-25662 | MsG0080047990.01.T01:intron | 50.0% | |
| GCATGCACTGAAGCACATGA+AGG | - | contig161end:25639-25658 | MsG0080047990.01.T01:intron | 50.0% | |
| GCCTGGGAAGGAACATGTTA+TGG | - | contig161end:24492-24511 | MsG0080047990.01.T01:three_prime_UTR | 50.0% | |
| GGGCAAGTAAATTGAGGCAG+CGG | + | contig161end:24520-24539 | None:intergenic | 50.0% | |
| GGGTATAAGGGTCAATGGAG+TGG | - | contig161end:25792-25811 | MsG0080047990.01.T01:intron | 50.0% | |
| TACCACTGAGTCAACCCAAG+TGG | + | contig161end:26379-26398 | None:intergenic | 50.0% | |
| TGCAACCGTAGCACCTTCTA+AGG | + | contig161end:25180-25199 | None:intergenic | 50.0% | |
| ! | GGCTGACCAGCTCTTTTCAT+AGG | + | contig161end:25895-25914 | None:intergenic | 50.0% |
| ! | TTGAAGAGAAGCACACTCGC+AGG | + | contig161end:26413-26432 | None:intergenic | 50.0% |
| !! | ACAGGAGGTGACTCTGGAAT+TGG | - | contig161end:25131-25150 | MsG0080047990.01.T01:intron | 50.0% |
| !! | CAGAAGTGTCAGTGCTACAG+AGG | + | contig161end:25500-25519 | None:intergenic | 50.0% |
| !! | GGCTGTGTCTCTTGCTTTTG+TGG | + | contig161end:24475-24494 | None:intergenic | 50.0% |
| !! | GTGTCTCTTGCTTTTGTGGG+GGG | + | contig161end:24471-24490 | None:intergenic | 50.0% |
| AATGGTGTCCATATGGGCCC+AGG | + | contig161end:25820-25839 | None:intergenic | 55.0% | |
| CCATCTCTAGCAGCTCAGAG+GGG | + | contig161end:26193-26212 | None:intergenic | 55.0% | |
| CCCATCTCTAGCAGCTCAGA+GGG | + | contig161end:26194-26213 | None:intergenic | 55.0% | |
| CCCTCTGAGCTGCTAGAGAT+GGG | - | contig161end:26191-26210 | MsG0080047990.01.T01:CDS | 55.0% | |
| CCTCTGAGCTGCTAGAGATG+GGG | - | contig161end:26192-26211 | MsG0080047990.01.T01:CDS | 55.0% | |
| GAGCTGCTAGAGATGGGGTT+TGG | - | contig161end:26197-26216 | MsG0080047990.01.T01:CDS | 55.0% | |
| GGACAAGTCCTTCACCCCAA+TGG | - | contig161end:25976-25995 | MsG0080047990.01.T01:intron | 55.0% | |
| TCAGGTGGAACCGTGGTGAA+TGG | - | contig161end:26080-26099 | MsG0080047990.01.T01:intron | 55.0% | |
| TGCTAGAGATGGGGTTTGGG+AGG | - | contig161end:26201-26220 | MsG0080047990.01.T01:CDS | 55.0% | |
| !! | ACCCACTTGGGTTGACTCAG+TGG | - | contig161end:26374-26393 | MsG0080047990.01.T01:CDS | 55.0% |
| AGGGTCAATGGAGTGGCACC+TGG | - | contig161end:25799-25818 | MsG0080047990.01.T01:intron | 60.0% | |
| CCCCATCTCTAGCAGCTCAG+AGG | + | contig161end:26195-26214 | None:intergenic | 60.0% | |
| CCCCTCTGAGCTGCTAGAGA+TGG | - | contig161end:26190-26209 | MsG0080047990.01.T01:CDS | 60.0% | |
| GCAAGAGACACAGCCTGGGA+AGG | - | contig161end:24480-24499 | MsG0080047990.01.T01:three_prime_UTR | 60.0% | |
| GGGTCAATGGAGTGGCACCT+GGG | - | contig161end:25800-25819 | MsG0080047990.01.T01:intron | 60.0% | |
| GAGTGGCACCTGGGCCCATA+TGG | - | contig161end:25809-25828 | MsG0080047990.01.T01:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| contig161end | gene | 24262 | 26473 | 24262 | ID=MsG0080047990.01;Name=MsG0080047990.01 |
| contig161end | mRNA | 24262 | 26473 | 24262 | ID=MsG0080047990.01.T01;Parent=MsG0080047990.01;Name=MsG0080047990.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0.66|0.5|1|1|1|4|367|354 |
| contig161end | exon | 24262 | 24651 | 24262 | ID=MsG0080047990.01.T01:exon:13598;Parent=MsG0080047990.01.T01 |
| contig161end | exon | 24738 | 25096 | 24738 | ID=MsG0080047990.01.T01:exon:13597;Parent=MsG0080047990.01.T01 |
| contig161end | exon | 25246 | 25622 | 25246 | ID=MsG0080047990.01.T01:exon:13596;Parent=MsG0080047990.01.T01 |
| contig161end | exon | 26168 | 26473 | 26168 | ID=MsG0080047990.01.T01:exon:13595;Parent=MsG0080047990.01.T01 |
| contig161end | CDS | 26168 | 26473 | 26168 | ID=MsG0080047990.01.T01:cds;Parent=MsG0080047990.01.T01 |
| contig161end | CDS | 25246 | 25622 | 25246 | ID=MsG0080047990.01.T01:cds;Parent=MsG0080047990.01.T01 |
| contig161end | CDS | 24738 | 25096 | 24738 | ID=MsG0080047990.01.T01:cds;Parent=MsG0080047990.01.T01 |
| contig161end | CDS | 24629 | 24651 | 24629 | ID=MsG0080047990.01.T01:cds;Parent=MsG0080047990.01.T01 |
| contig161end | three_prime_UTR | 24262 | 24628 | 24262 | ID=MsG0080047990.01.T01:three_prime_utr;Parent=MsG0080047990.01.T01 |
| Gene Sequence |
| Protein sequence |
